BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0722 (hflX-like) DE:GTP-BINDING PROTEIN HFLX
(423 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75086 GTP-binding protein hflx PAB0722 - Pyrococcus abyssi... 825 0.0
pir||F71054 probable GTP-binding protein hflX - Pyrococcus horik... 732 0.0
pir||E64440 hypothetical protein MJ1126 - Methanococcus jannasch... 276 3e-73
pir||A72504 probable GTP-binding protein APE2007 - Aeropyrum per... 226 3e-58
pir||E72366 conserved hypothetical protein - Thermotoga maritima... 221 1e-56
pir||C70464 GTP-binding protein HflX - Aquifex aeolicus >gi|2984... 215 1e-54
pir||C83028 probable GTP-binding protein PA4943 [imported] - Pse... 213 3e-54
dbj|BAB08866.1| (AB013396) GTP binding protein-like [Arabidopsis... 212 6e-54
gb|AAG20649.1| (AE005134) GTP-binding protein; HflX1 [Halobacter... 206 3e-52
pir||T35116 hypothetical protein SC4H2.17 SC4H2.17 - Streptomyce... 206 3e-52
pir||S75472 GTP-binding protein hflX - Synechocystis sp. (strain... 204 2e-51
pir||D70505 probable HflX - Mycobacterium tuberculosis (strain H... 195 7e-49
pir||T44592 ATP/GTP-binding protein [imported] - Streptomyces fr... 194 1e-48
pir||B69888 GTP-binding protein proteinase modulator homolog ynb... 191 1e-47
pir||T44348 GTP binding protein [imported] - Clostridium histoly... 188 1e-46
gb|AAK40607.1| GTP-binding protein (hflX) [Sulfolobus solfataricus] 187 2e-46
pir||S72938 hflX protein - Mycobacterium leprae >gi|467091|gb|AA... 185 8e-46
pir||F82848 GTP-binding protein XF0088 [imported] - Xylella fast... 183 4e-45
dbj|BAB06081.1| (AP001515) unknown conserved protein [Bacillus h... 181 1e-44
pir||H75555 GTP-binding protein HflX - Deinococcus radiodurans (... 177 2e-43
sp|P25519|HFLX_ECOLI GTP-BINDING PROTEIN HFLX >gi|1361024|pir||S... 176 3e-43
pir||D81835 hypothetical protein NMA1445 [imported] - Neisseria ... 176 4e-43
pir||G71521 probable GTP binding protein - Chlamydia trachomatis... 174 2e-42
pir||F81678 GTP-binding protein HflX TC0658 [imported] - Chlamyd... 174 2e-42
pir||D82334 GTP-binding protein HflX VC0348 [imported] - Vibrio ... 170 2e-41
pir||B72073 GTP binding protein - Chlamydophila pneumoniae (stra... 169 4e-41
pir||F81594 GTP-binding protein HflX, probable CP0276 [imported]... 169 4e-41
gb|AAG19628.1| (AE005051) GTP-binding protein; HflX2 [Halobacter... 157 2e-37
gi|6912588 Pseudoautosomal GTP-binding protein-like [Homo sapien... 138 2e-31
gb|AAF56472.1| (AE003752) CG5116 gene product [Drosophila melano... 138 2e-31
pir||T46039 hypothetical protein T16K5.80 - Arabidopsis thaliana... 127 3e-28
pir||T22287 hypothetical protein F46B6.4 - Caenorhabditis elegan... 104 3e-21
gb|AAC14113.1| (AF055859) GTP-binding protein HflX [Synechococcu... 85 1e-15
pir||G64475 GTP-binding protein, GTP1/OBG-family - Methanococcus... 72 1e-11
gb|AAB99416.1| (U67581) GTP-binding protein, member of GTP1/OBG-... 72 1e-11
pir||A72397 thiophene oxidation protein ThdF-related GTPase - Th... 72 1e-11
>pir||D75086 GTP-binding protein hflx PAB0722 - Pyrococcus abyssi (strain Orsay)
>gi|5458505|emb|CAB49993.1| (AJ248286) GTP-BINDING
PROTEIN HFLX [Pyrococcus abyssi]
Length = 423
Score = 825 bits (2107), Expect = 0.0
Identities = 423/423 (100%), Positives = 423/423 (100%)
Query: 1 MRAIGVIRKSRRERVSREEFEELLRSAGYEILAIVEQVREEHPRFNIGPGKLEEIKELVR 60
MRAIGVIRKSRRERVSREEFEELLRSAGYEILAIVEQVREEHPRFNIGPGKLEEIKELVR
Sbjct: 1 MRAIGVIRKSRRERVSREEFEELLRSAGYEILAIVEQVREEHPRFNIGPGKLEEIKELVR 60
Query: 61 ELNPDKVVFANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQY 120
ELNPDKVVFANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQY
Sbjct: 61 ELNPDKVVFANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQY 120
Query: 121 ELPLVKEAIRRIKMGDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKR 180
ELPLVKEAIRRIKMGDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKR
Sbjct: 121 ELPLVKEAIRRIKMGDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKR 180
Query: 181 EEEGFVLVALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVRGKMLLVTDTV 240
EEEGFVLVALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVRGKMLLVTDTV
Sbjct: 181 EEEGFVLVALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVRGKMLLVTDTV 240
Query: 241 GFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRP 300
GFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRP
Sbjct: 241 GFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRP 300
Query: 301 MIIALNKIDLVSEEDVQEKELLLRELLDGRTNAIGIAKISAKHKKLEELYELIDRALTKL 360
MIIALNKIDLVSEEDVQEKELLLRELLDGRTNAIGIAKISAKHKKLEELYELIDRALTKL
Sbjct: 301 MIIALNKIDLVSEEDVQEKELLLRELLDGRTNAIGIAKISAKHKKLEELYELIDRALTKL 360
Query: 361 PKFQTFEIKVKDPSKLGKILAMLHSMGEVLEVSYGNETRIRAYIQTGLIRELNKLGVKLR 420
PKFQTFEIKVKDPSKLGKILAMLHSMGEVLEVSYGNETRIRAYIQTGLIRELNKLGVKLR
Sbjct: 361 PKFQTFEIKVKDPSKLGKILAMLHSMGEVLEVSYGNETRIRAYIQTGLIRELNKLGVKLR 420
Query: 421 RIN 423
RIN
Sbjct: 421 RIN 423
>pir||F71054 probable GTP-binding protein hflX - Pyrococcus horikoshii
>gi|3257549|dbj|BAA30232.1| (AP000005) 426aa long
hypothetical GTP-binding protein hflX [Pyrococcus
horikoshii]
Length = 426
Score = 732 bits (1869), Expect = 0.0
Identities = 360/423 (85%), Positives = 402/423 (94%)
Query: 1 MRAIGVIRKSRRERVSREEFEELLRSAGYEILAIVEQVREEHPRFNIGPGKLEEIKELVR 60
MRAIGVIRKSR ER SREEFEELLRSAGYEILAIVEQVREEHPR+NIGPGKLEE+K+LV+
Sbjct: 4 MRAIGVIRKSRGERWSREEFEELLRSAGYEILAIVEQVREEHPRYNIGPGKLEEVKKLVK 63
Query: 61 ELNPDKVVFANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQY 120
EL PDKV+FANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQY
Sbjct: 64 ELKPDKVIFANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQY 123
Query: 121 ELPLVKEAIRRIKMGDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKR 180
ELPLVKEAIRRIKMGDRAGFKGMGEYQVHQY KHI+YRMG+IK ELEKIR+EREIRRKKR
Sbjct: 124 ELPLVKEAIRRIKMGDRAGFKGMGEYQVHQYLKHIKYRMGRIKGELEKIRAEREIRRKKR 183
Query: 181 EEEGFVLVALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVRGKMLLVTDTV 240
EEEGFVL+ALAGYTNAGKSTLLNAL+G+ +EAKNQMFTTL TTTRRF+V+GKMLLVTDTV
Sbjct: 184 EEEGFVLIALAGYTNAGKSTLLNALTGEDIEAKNQMFTTLDTTTRRFKVKGKMLLVTDTV 243
Query: 241 GFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRP 300
GFIDGLPPFIVEAFHSTLEEIVKADII+LVLDASEPW+E+RRK FASL+VLRELKALDRP
Sbjct: 244 GFIDGLPPFIVEAFHSTLEEIVKADIIILVLDASEPWKEIRRKLFASLNVLRELKALDRP 303
Query: 301 MIIALNKIDLVSEEDVQEKELLLRELLDGRTNAIGIAKISAKHKKLEELYELIDRALTKL 360
MI+ALNK+DL+S+ED +EKELL+RE +DGR N +G+A+ISAK +LEELY LI+ AL++L
Sbjct: 304 MIVALNKVDLISDEDAKEKELLVRETIDGRANTVGVARISAKLNQLEELYNLIEVALSRL 363
Query: 361 PKFQTFEIKVKDPSKLGKILAMLHSMGEVLEVSYGNETRIRAYIQTGLIRELNKLGVKLR 420
PKFQTFEI+VKDPSKLGK+L+M+HSMG++LEV Y ET+I+AYIQTGLIREL KLGV L+
Sbjct: 364 PKFQTFEIRVKDPSKLGKVLSMVHSMGDLLEVEYSEETKIKAYIQTGLIRELTKLGVSLK 423
Query: 421 RIN 423
RI+
Sbjct: 424 RIS 426
>pir||E64440 hypothetical protein MJ1126 - Methanococcus jannaschii
>gi|1591762|gb|AAB99128.1| (U67555) GTP-binding protein,
member of GTP1/OBG-family [Methanococcus jannaschii]
Length = 402
Score = 276 bits (699), Expect = 3e-73
Identities = 148/322 (45%), Positives = 220/322 (67%), Gaps = 8/322 (2%)
Query: 6 VIRK-SRRERVSREEFEELLRSAGYEILAIVEQVREEHPRFNIGPGKLEEIKELVRELNP 64
++RK S+ +R S EE +EL Y + + Q+R+ P++ IG G +E I E ++E N
Sbjct: 3 ILRKDSKFDRKSIEELKELAEVL-YNPVKTIVQIRKADPKYQIGSGLVERIAENIKEENI 61
Query: 65 DKVVFANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELPL 124
+ V+ N LTPSQ YNL K+ +V++IDK +LVL IF K A +KEA+LQV LA LQYELP
Sbjct: 62 EIVIVGNILTPSQKYNLAKKFKVEVIDKIELVLRIFYKHARTKEAQLQVRLAELQYELPR 121
Query: 125 VKEAIRRIKMGDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEG 184
+E +R KMG++ GF G G+Y+V +Y++ ++ + IK +LEK+R R + RK R +
Sbjct: 122 AREKVRLAKMGEQPGFGGYGDYEVEKYYQKVKREIATIKRKLEKLREHRRVARKGRAK-- 179
Query: 185 FVLVALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVRGKMLLVTDTVGFID 244
F V L GYTNAGK++LLNAL+G+ E+KNQ+FTTL+TTTR + + +LVTDTVGFID
Sbjct: 180 FDTVGLIGYTNAGKTSLLNALTGENKESKNQVFTTLTTTTRAIKGIKRKILVTDTVGFID 239
Query: 245 GLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRPMIIA 304
LPPF++EAF ST+EE +D+I++V+DAS+ E++RK + ++L ++ P+I
Sbjct: 240 DLPPFMIEAFLSTIEESADSDLILIVVDASDDIEEIKRKLKVNHEILSKINC-KAPIITV 298
Query: 305 LNKIDLVSEEDVQEKELLLREL 326
NK+D +++E +K +L EL
Sbjct: 299 FNKVDKITKE---KKRKILEEL 317
>pir||A72504 probable GTP-binding protein APE2007 - Aeropyrum pernix (strain
K1) >gi|5105705|dbj|BAA81017.1| (AP000063) 372aa long
hypothetical GTP-binding protein [Aeropyrum pernix]
Length = 372
Score = 226 bits (571), Expect = 3e-58
Identities = 126/326 (38%), Positives = 191/326 (57%), Gaps = 5/326 (1%)
Query: 18 EEFEELLRSAGYEILAIVEQVREEHPRFNIGPGKLEEIKELVRELNPDKVVFANRLTPSQ 77
+E L +AGY++ + R HPR I G L+ IK+ R + +++ L PS
Sbjct: 20 DEALALAETAGYDVARLW---RNRHPRI-IKKGLLDAIKDEARSSGAEALIYYGDLQPSS 75
Query: 78 AYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELPLVKEAIRRIKMGDR 137
+ + +E ++++D+ L+LEIF A S+EA LQ+E A +++E+PL +E +RR KMG+
Sbjct: 76 KFTVMRETGLNVVDRVMLILEIFALHASSREALLQIEAARIKHEIPLAREFVRRSKMGEY 135
Query: 138 AGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEGFVLVALAGYTNAG 197
GF G G Y QY +H+R R+ KI+ EL+K+RS RE R R + G V++ GY +AG
Sbjct: 136 PGFLGPGMYAADQYLRHLRRRLVKIRRELDKMRSTRESRLSSRAKSGLKQVSIVGYASAG 195
Query: 198 KSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVRG-KMLLVTDTVGFIDGLPPFIVEAFHS 256
K++L N L+G+ + FTTL R G + +L DTVGFI +PP IVEAFH+
Sbjct: 196 KTSLFNLLTGEDRPVGPEYFTTLQPKHSRITWGGVEGVLAADTVGFIRDVPPEIVEAFHA 255
Query: 257 TLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRPMIIALNKIDLVSEEDV 316
TL E+ +D IV V+DA+EP ++ K A +D L + AL PM+IA NKID + ++
Sbjct: 256 TLAEVKHSDAIVFVIDAAEPPSDIEEKLHAGIDTLARIGALSAPMVIAANKIDALQPPEI 315
Query: 317 QEKELLLRELLDGRTNAIGIAKISAK 342
E+ L+ ++ + ISAK
Sbjct: 316 GERIALIEREASILPHSPPVIPISAK 341
>pir||E72366 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981040|gb|AAD35612.1|AE001728_13 (AE001728)
conserved hypothetical protein [Thermotoga maritima]
Length = 406
Score = 221 bits (558), Expect = 1e-56
Identities = 140/373 (37%), Positives = 217/373 (57%), Gaps = 23/373 (6%)
Query: 4 IGVIRKSRRERVSREEFEELLRSAGYEILAIVEQVREE-HPRFNIGPGKLEEIKELVREL 62
+ V + + + S EE + L ++ G E++ + Q R + P +G GKL+++KE+V
Sbjct: 3 VAVGKDEEKIKESLEEMKGLCKTLGVEVVEWLWQKRAKPDPATYLGKGKLQKLKEVVEFC 62
Query: 63 NPDKVVFANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYEL 122
D VV + +TP Q N+ EL VD++D+ Q++LEIF + A S+E KLQVE+A+L YEL
Sbjct: 63 EADLVVVDDEITPVQYKNMQSELNVDVLDRTQVILEIFARHATSEEGKLQVEMASLLYEL 122
Query: 123 P-LVKEAIRRIKMGDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKRE 181
P LV + ++G G +G GE + +HI+ R+ +++ L++I ER +RK+R
Sbjct: 123 PRLVGKGEELSRLGGGIGTRGPGEPLLEVLRRHIKNRIAQLRKRLKEIEQERNTQRKQRL 182
Query: 182 EEGFVLVALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVR-GKMLLVTDTV 240
E+ V++ GYTNAGKSTLL L+ V +++F TL TRR +++ G+++LV+DTV
Sbjct: 183 EKKIPHVSIVGYTNAGKSTLLKVLTDSDVYVADKLFATLEPVTRRLKLKSGRVILVSDTV 242
Query: 241 GFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRP 300
GFI LP IV AF +TLEEI +D+++ ++DAS+P+ E + K AS VL E+ A P
Sbjct: 243 GFIRKLPHTIVSAFKATLEEIKYSDVLIHLVDASDPYLEEKMK--ASEKVLEEIGADKIP 300
Query: 301 MIIALNKIDLVSEEDVQ--------------EKELLLRELLDGRTNAIGIAKISAKHK-- 344
I+ NKIDL E ++ EK + L +LLD I + K
Sbjct: 301 RILVFNKIDLCPRERIETLKWKYPEALFISAEKRIGLDQLLDRLEEVISQRDVQETLKVP 360
Query: 345 --KLEELYELIDR 355
K+ ++Y L DR
Sbjct: 361 LEKIGQIYALKDR 373
>pir||C70464 GTP-binding protein HflX - Aquifex aeolicus
>gi|2984170|gb|AAC07703.1| (AE000762) GTP-binding
protein HflX [Aquifex aeolicus]
Length = 370
Score = 215 bits (541), Expect = 1e-54
Identities = 146/369 (39%), Positives = 216/369 (57%), Gaps = 18/369 (4%)
Query: 1 MRAI--GVIRKSRRERVSREEFEEL---LRSAGYEILAIVEQVRE-EHPRFNIGPGKLEE 54
MRA+ GV + + S+E +EL + + G + L + Q R ++ IG GK +E
Sbjct: 1 MRAVLVGVWGRDISKEFSKESIKELKGLVEAVGGKTLGYILQKRNFPDQKYYIGQGKAQE 60
Query: 55 IKELVRELNPDKVVFANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVE 114
I+E+VR D VVF + LTP+Q NL K + ++D+ LVLEIF +RA +KEAKLQVE
Sbjct: 61 IREIVRGTKADTVVFDDFLTPAQISNLEKVINAKVLDRTDLVLEIFSRRAKTKEAKLQVE 120
Query: 115 LANLQYELPLVKEAIRRI-KMGDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSER 173
LA L +ELP + + + ++G G +G GE + + I+ R+ +IK ELE+I+ R
Sbjct: 121 LAKLMHELPRLHGKGKALSRLGGGLGTRGPGEQETEVRKRLIKKRIHRIKKELEEIKKRR 180
Query: 174 EIRRKKREE----EGFVLVALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLST-TTRRFR 228
+RK+RE E V VA+ GYTNAGKSTL+NAL+ N +F TL T T+ R
Sbjct: 181 REQRKRRERSEKGERIVRVAIVGYTNAGKSTLMNALTKKDTYVANMLFATLDTKTSARVI 240
Query: 229 VRGKMLLVTDTVGFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDAS-EPWREVRRKFFAS 287
LL TDTVGFI LPP ++E+F +TLEE+ +ADII+ V+D S E W + + ++
Sbjct: 241 YPDFKLLFTDTVGFIRKLPPELIESFKATLEEVQEADIILHVVDVSDEGWLD----YVST 296
Query: 288 L-DVLRELKALDRPMIIALNKIDLVSEEDVQEKELLLRELLDGRTNAIGIAKISAKHKKL 346
+ +VL+EL A ++P+I ALNK D + E + + L ++G I K K L
Sbjct: 297 VNEVLKELGAEEKPIIYALNKADKLVETENEMNHLPHPAFIEGDAVLISAEKRWGLGKLL 356
Query: 347 EELYELIDR 355
+++ E+ R
Sbjct: 357 DKIVEVAKR 365
>pir||C83028 probable GTP-binding protein PA4943 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951223|gb|AAG08328.1|AE004907_6 (AE004907) probable
GTP-binding protein [Pseudomonas aeruginosa]
Length = 433
Score = 213 bits (537), Expect = 3e-54
Identities = 149/408 (36%), Positives = 230/408 (55%), Gaps = 23/408 (5%)
Query: 14 RVSREEFEELLRSAGYEILAIVEQVREE-HPRFNIGPGKLEEIKELVRELNPDKVVFANR 72
R +EF+EL+RSAG E +A V R + ++ IG GK+EE+ +LV+ N + V+F +
Sbjct: 25 REDPQEFQELVRSAGAETVAFVSVSRHQPSAKYLIGSGKVEELHDLVKAENVELVIFNHT 84
Query: 73 LTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQY-ELPLVKEAIRR 131
LTPSQ NL + ++D+ L+L+IF +RA + E KLQVELA L++ LV+
Sbjct: 85 LTPSQERNLERAFECRVLDRTGLILDIFAQRARTHEGKLQVELAQLEHMSTRLVRGWTHL 144
Query: 132 IKMGDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEGFVLVALA 191
+ G +G GE Q+ + +R R+ +IK LEK+RS+RE R+ R+ V+L
Sbjct: 145 ERQKGGIGLRGPGETQLETDRRLLRVRIRQIKQRLEKVRSQREQARRGRKRADIPAVSLV 204
Query: 192 GYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVRG-KMLLVTDTVGFIDGLPPFI 250
GYTNAGKSTL N+L+ V A NQ+F TL T RR ++ +++ DTVGFI LP +
Sbjct: 205 GYTNAGKSTLFNSLTASEVYAANQLFATLDPTLRRLQLDDLGPVVLADTVGFIRHLPHKL 264
Query: 251 VEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRPMIIALNKIDL 310
VEAF +TLEE AD+++ V+DA EP R+ + + L VL E+ A + PM+ NK+DL
Sbjct: 265 VEAFRATLEESSNADLLLHVIDAYEPERDAQVE--QVLAVLGEIGANELPMLEVYNKVDL 322
Query: 311 VS--EEDVQEKELLLRELLDGRTNAIGIAKISAKHKKLEELYELIDRALTKLPKFQTFEI 368
+ E +Q + G+ + ++ + E +L+ +A+ +L F
Sbjct: 323 LPSVEPHIQRDD-------SGKPVRVWLS------AQTGEGLDLLRQAIAELLGEDLFVG 369
Query: 369 KVKDPSKLGKILAMLHSMGEVLEVSYGNETRIRAYIQTGLIR-ELNKL 415
++ P +LG++ A L +G V ++ E +Q L R ELN+L
Sbjct: 370 TLRLPQRLGRLRAQLFELGAVQSEAHDEEG--CTLLQVRLPRAELNRL 415
>dbj|BAB08866.1| (AB013396) GTP binding protein-like [Arabidopsis thaliana]
Length = 540
Score = 212 bits (534), Expect = 6e-54
Identities = 150/418 (35%), Positives = 227/418 (53%), Gaps = 38/418 (9%)
Query: 4 IGVIRKSRRERV-----SREEFEELLRSAGYEIL-AIVEQVREEHPRFNIGPGKLEEIKE 57
+GV RK E + S EE E+L +AG ++ + +++ +PR IG GK+ EIK
Sbjct: 120 VGVERKGDGECLFNIEESLEELEQLADTAGLAVVGSTYQKLASPNPRTYIGSGKVAEIKS 179
Query: 58 LVRELNPDKVVFANRLTPSQAYNLWKELRVDI--IDKWQLVLEIFEKRAHSKEAKLQVEL 115
+ L+ + V+F + L+P Q NL K D+ D+ L+L+IF +RA + EA LQV L
Sbjct: 180 AINALDVETVIFDDELSPGQLRNLEKAFGGDVRVCDRTALILDIFNQRAATHEAALQVAL 239
Query: 116 ANLQYELPLVKEAIRRIKMGDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREI 175
A ++Y+LP + ++ KGMGE Q+ + +R ++G +K ELE +R R+
Sbjct: 240 AQMEYQLPRLTRMWTHLERQSGGQVKGMGEKQIEVDKRILRTQIGVLKKELESVRKHRKQ 299
Query: 176 RRKKREEEGFVLVALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVR-GKML 234
R +R +V+L GYTNAGKSTLLN L+G V A+N++F TL TTRR +++ GK
Sbjct: 300 YRSRRVAIPVPVVSLVGYTNAGKSTLLNQLTGANVLAENRLFATLDPTTRRVQMQNGKEF 359
Query: 235 LVTDTVGFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLREL 294
L+TDTVGFI LP +V AF +TLEEI ++ ++V V+D S P E ++ A V+ EL
Sbjct: 360 LLTDTVGFIQKLPTTLVAAFRATLEEIAESSLLVHVVDISHPLAE--QQIEAVEKVMSEL 417
Query: 295 KALDRPMIIALNKIDLVSEEDVQEKELLLRELLDGRTNAIGIAK-------ISAKHKKLE 347
P ++ NK+D V +D Q+ +L E G T I +A H+KL+
Sbjct: 418 DVSSIPKLVVWNKVDRV--DDPQKVKLEAEE--TGDTICISALTGEGLDDFCNAVHEKLK 473
Query: 348 ELYELIDRALTKLPKFQTFEIKVKDPSKLGKILAMLHSMGEVLEVSY-GNETRIRAYI 404
+ ++ L P G +L+ +H +G V E Y N T IRA++
Sbjct: 474 DSMVWVEALL---------------PFDKGDLLSTIHKVGMVKETEYTENGTLIRAHV 516
>gb|AAG20649.1| (AE005134) GTP-binding protein; HflX1 [Halobacterium sp. NRC-1]
Length = 429
Score = 206 bits (520), Expect = 3e-52
Identities = 137/405 (33%), Positives = 212/405 (51%), Gaps = 27/405 (6%)
Query: 6 VIRKSRRER-VSREEFEELLRSAGYEILAIVEQVREEHPRFNIGPGKLEEIKELVRELNP 64
V+ K R + + +E L +AG E++A Q R P +++G G + +I LV +
Sbjct: 10 VVAKRRTDTPIETDEIRALCEAAGVEVVAERTQARPRDPTYDLGDGAVADIAGLVERRSA 69
Query: 65 DKVVFANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELPL 124
D VV + L P +A+NL + + +++D+ +LVL+IF +RA +K A+L+V LA L+YELP
Sbjct: 70 DLVVVDDHLDPGRAHNLQEAVGAEVVDRARLVLDIFGERAETKRARLEVRLAELRYELPR 129
Query: 125 VKEAIRRIKMGDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEG 184
+ + R + R GF+ GE Q R R+ + EL+++ + R+ R E G
Sbjct: 130 AQARVERGETQGRQGFRSGGERPAAQLKADYRQRITDRRAELDRLDDADDGLREARRESG 189
Query: 185 FVLVALAGYTNAGKSTLLNALSGDY--------------VEAKNQMFTTLSTTTRRFRVR 230
F LVALAGYTNAGKSTLL L+ D +++++F TL+TTTRR V
Sbjct: 190 FDLVALAGYTNAGKSTLLRRLADDLAVDENDGHGDRTDTAASRDRLFETLNTTTRRATVG 249
Query: 231 GKMLLVTDTVGFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDV 290
+ +L+TDTVGF+D LP +++ +F +TL +AD ++LV+DA++ +R K AS D
Sbjct: 250 ERRVLLTDTVGFVDDLPRWLLSSFRTTLAAAREADAVLLVVDATDDREGIRAKVEASRD- 308
Query: 291 LRELKALDRPMIIALNKIDLVSEEDVQEKELLLRELLDGRTNAIGIAKISAKHKKLEELY 350
EL + ++ LNK D + D+ K LL E G A + E L
Sbjct: 309 --ELADAEGTLVPVLNKRDAAT--DLDAKRRLLAE-------HAGHAPVVTSATGAEGLD 357
Query: 351 ELIDRALTKLPKFQTFEIKVKDPSKLGKILAMLHSMGEVLEVSYG 395
L +R LP + + V + ++ H G V E YG
Sbjct: 358 ALRERLTDALPDRRRVSLSVPNTDAGNAFVSWCHDRGTVHEPDYG 402
>pir||T35116 hypothetical protein SC4H2.17 SC4H2.17 - Streptomyces coelicolor
>gi|2995304|emb|CAA18333.1| (AL022268) hypothetical
protein SC4H2.17 [Streptomyces coelicolor A3(2)]
Length = 497
Score = 206 bits (520), Expect = 3e-52
Identities = 140/406 (34%), Positives = 226/406 (55%), Gaps = 24/406 (5%)
Query: 16 SREEFEELLRSAGYEILAIVEQVREEHPRFN-IGPGKLEEIKELVRELNPDKVVFANRLT 74
S E L +AG +L V Q R++ IG GK EE++++V D V+ L+
Sbjct: 98 SLAELAALAETAGALVLDGVVQRRDKPDAATYIGSGKAEELRDVVLHTGADTVICDGELS 157
Query: 75 PSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELPLVK---EAIRR 131
P Q +L ++V +ID+ L+L+IF + A S+E K QV LA +QY LP ++ +++ R
Sbjct: 158 PGQLIHLEDVVKVKVIDRTALILDIFAQHAKSREGKAQVALAQMQYMLPRLRGWGQSLSR 217
Query: 132 IKMGDRAG---FKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEGFVLV 188
G + G +G GE ++ + IR +M K++ E+ ++++ REI+R++R+ V
Sbjct: 218 QMGGGKGGGLATRGPGETKIETDRRRIREKMAKMRREIAEMKTGREIKRQERKRHKVPSV 277
Query: 189 ALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRV-RGKMLLVTDTVGFIDGLP 247
A+AGYTNAGKS+LLN L+G V +N +F TL T RR G++ + DTVGF+ LP
Sbjct: 278 AIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRAETPSGRLYTLADTVGFVRHLP 337
Query: 248 PFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRPMIIALNK 307
+VEAF ST+EE+ +D+I+ V+D S P E + A +V+R++ A D P I+ +NK
Sbjct: 338 HHLVEAFRSTMEEVGDSDLILHVVDGSHPVPE--EQLAAVREVIRDVGATDVPEIVVINK 395
Query: 308 IDLVSEEDVQEKELLLRELLDGRTNAIGIAKISAKHKKLEELYELIDRALTKLPKFQTFE 367
D+ L+L+ LL AI ++ + ++ +++L LID L + + E
Sbjct: 396 ADMAD-------PLVLQRLLRIEKRAIAVSARTGQN--IDQLLALIDNELPR----PSVE 442
Query: 368 IKVKDPSKLGKILAMLHSMGEVLEVSYGNE-TRIRAYIQTGLIREL 412
I+ P GK++A H GEV+ + E T ++ + L EL
Sbjct: 443 IEALVPYTHGKLVARAHDEGEVISEEHTPEGTLLKVRVHEELAAEL 488
>pir||S75472 GTP-binding protein hflX - Synechocystis sp. (strain PCC 6803)
>gi|1653117|dbj|BAA18033.1| (D90911) GTP-binding protein
HflX [Synechocystis sp.]
Length = 534
Score = 204 bits (513), Expect = 2e-51
Identities = 119/304 (39%), Positives = 187/304 (61%), Gaps = 10/304 (3%)
Query: 19 EFEELLRSAGYEILAIVEQVREE-HPRFNIGPGKLEEIKELVRELNPDKVVFANRLTPSQ 77
E E L+ SAG ++L +++Q R + HP+ +G GK+EE+ V+ + VVF L+ +Q
Sbjct: 193 ELERLVDSAGAQVLQVMQQNRSKPHPQTVVGEGKVEELALAVQTTGANLVVFDRDLSAAQ 252
Query: 78 AYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELP-LVKEAIRRIKMGD 136
NL + V +ID+ +L+L+IF +RA S+ KLQVELA L+Y LP LV ++G
Sbjct: 253 VRNLEQRCGVRVIDRTELILDIFAQRAQSRAGKLQVELAQLEYLLPKLVGRGQGMSRLGG 312
Query: 137 RAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEGFVLVALAGYTNA 196
G +G GE ++ + I+ R+ K++ ++ +++S R R +R+++ VA+ GYTNA
Sbjct: 313 GIGTRGPGETKLETERRTIQSRIAKLQKQVNELQSHRSRLRNQRQQQAVPTVAIVGYTNA 372
Query: 197 GKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVRG------KMLLVTDTVGFIDGLPPFI 250
GKSTLLNAL+ + A +Q+F TL TTRR + +L+TDTVGFI LP +
Sbjct: 373 GKSTLLNALTQADIYAADQLFATLDPTTRRLSLLDPENQTYHPILLTDTVGFIHKLPDAL 432
Query: 251 VEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRPMIIALNKIDL 310
V+AF +TLEE+ +AD+++ V+D S+ R RR+ + ++L E+ PM++ NKID
Sbjct: 433 VDAFRATLEEVTEADLLLQVVDLSD--RAWRRQIASVANILAEMPLATAPMVMVFNKIDQ 490
Query: 311 VSEE 314
V E
Sbjct: 491 VPSE 494
>pir||D70505 probable HflX - Mycobacterium tuberculosis (strain H37RV)
>gi|2292959|emb|CAB10901.1| (Z98209) hflX [Mycobacterium
tuberculosis]
Length = 495
Score = 195 bits (491), Expect = 7e-49
Identities = 137/421 (32%), Positives = 226/421 (53%), Gaps = 39/421 (9%)
Query: 14 RVSREEFEELLRSAGYEILAIVEQVREE-HPRFNIGPGKLEEIKELVRELNPDKVVFANR 72
R S E L +AG ++L + Q R++ P IG GK E++E++ D V+
Sbjct: 89 RASLAELAALAETAGSQVLEGLIQRRDKPDPSTYIGSGKAAELREVIVATGADTVICDGE 148
Query: 73 LTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELPLVK---EAI 129
L+P+Q L K ++V +ID+ L+L+IF + A S+E K QV LA ++Y LP ++ E++
Sbjct: 149 LSPAQLTALEKAVQVKVIDRTALILDIFAQHATSREGKAQVSLAQMEYMLPRLRGWGESM 208
Query: 130 RRIKMGDRAG-------FKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREE 182
R + G RAG +G GE ++ + IR RM K++ ++ ++ R+ +R +R
Sbjct: 209 SR-QAGGRAGGSGGGVGLRGPGETKIETDRRRIRERMAKLRRDIRAMKQVRDTQRSRRRH 267
Query: 183 EGFVLVALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRV-RGKMLLVTDTVG 241
+A+ GYTNAGKS+LLNAL+G V ++ +F TL TTRR G+ +++TDTVG
Sbjct: 268 SDVPSIAIVGYTNAGKSSLLNALTGAGVLVQDALFATLEPTTRRAEFGDGRPVVLTDTVG 327
Query: 242 FIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASE--PWREVRRKFFASLDVLRELKALDR 299
F+ LP +VEAF STLEE+V AD++V V+D S+ P ++ +V+ +
Sbjct: 328 FVRHLPTQLVEAFRSTLEEVVHADLLVHVVDGSDGHPLAQIDAVRQVISEVIADHDGDPP 387
Query: 300 PMIIALNKIDLVSEEDVQEKELLLRELLDGRTNAIGIAK-----ISAKHKKLEELYELID 354
P ++ +NK+D+ S +L+L +L G A+ ++ I A +++ EL D
Sbjct: 388 PELLVVNKVDVAS-------DLMLAKLRHGLPGAVFVSARTGDGIDALRRRMAELVVPAD 440
Query: 355 RALTKLPKFQTFEIKVKDPSKLGKILAMLHSMGEVLEVSYGNE-TRIRAYIQTGLIRELN 413
A + V P G ++A +H+ G + + + E TRI+A + L L
Sbjct: 441 TA-----------VDVVIPYDRGDLVARVHADGRIQQAEHKPEGTRIKARVPEALAATLR 489
Query: 414 K 414
+
Sbjct: 490 E 490
>pir||T44592 ATP/GTP-binding protein [imported] - Streptomyces fradiae
>gi|5199325|gb|AAD40807.1|AF145049_8 (AF145049)
ATP/GTP-binding protein [Streptomyces fradiae]
Length = 425
Score = 194 bits (489), Expect = 1e-48
Identities = 137/404 (33%), Positives = 215/404 (52%), Gaps = 28/404 (6%)
Query: 19 EFEELLRSAGYEILAIVEQVREE-HPRFNIGPGKLEEIKELVRELNPDKVVFANRLTPSQ 77
E L+ +AG E++ V Q R++ P IG GK E+ LV +L D +V L+P+Q
Sbjct: 27 ELAALVEAAGAEVVHEVVQRRDKPDPATYIGSGKAAELTGLVADLEVDTIVCDGELSPAQ 86
Query: 78 AYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELPLVK---EAIRRIKM 134
L + +ID+ L+L+IF +RA S+E + QV LA +QY +P ++ ++ R+
Sbjct: 87 LVRLADLVDAKVIDRTALILDIFAQRATSREGRAQVALAQMQYMMPRLRGLGRSLSRLSG 146
Query: 135 GDRAGF--KGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEGFVLVALAG 192
G G +G GE ++ + +R M ++ ELE++ + R +RRK+R VALAG
Sbjct: 147 GSGGGLATRGPGETKIETDRRRLRDNMESVRRELEQMENGRALRRKRRRGSNIPSVALAG 206
Query: 193 YTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVRGKMLLVTDTVGFIDGLPPFIVE 252
YTNAGKS+LLN L+G V K+ +F TL T RR R G++ +TDTVGF+ LP +V+
Sbjct: 207 YTNAGKSSLLNRLTGADVLVKDALFATLDPTVRRVRAGGRVCTLTDTVGFVSRLPHHLVD 266
Query: 253 AFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRPMIIALNKIDLVS 312
AF STLEE+ +AD+++ V+D+S P + R+ V+ ++ P I+ NK D +
Sbjct: 267 AFRSTLEEVTEADLVLHVVDSSHP--DPLRQIETVRAVIGDIGGAGVPEILVANKAD-AA 323
Query: 313 EEDVQEKELLLR---ELLDGRTNAIGIAKISAKHKKLEELYELIDRALTKLPKFQTFEIK 369
E E+ L E++ RT A G+ + L+DR +L +++
Sbjct: 324 PEGALERLLAAEPAAEVVSARTGA-GVDR-------------LLDRVAERL-SGTGLQME 368
Query: 370 VKDPSKLGKILAMLHSMGEVL-EVSYGNETRIRAYIQTGLIREL 412
+ P G +L +H G VL E G R+ A + L E+
Sbjct: 369 LLLPYTEGGLLTRIHDEGTVLREEHTGTGVRLTARVPERLAAEV 412
>pir||B69888 GTP-binding protein proteinase modulator homolog ynbA - Bacillus
subtilis >gi|1750108|gb|AAB41077.1| (U66480) YnbA
[Bacillus subtilis] >gi|2634127|emb|CAB13627.1| (Z99113)
similar to GTP-binding protein protease modulator
[Bacillus subtilis]
Length = 334
Score = 191 bits (481), Expect = 1e-47
Identities = 117/295 (39%), Positives = 174/295 (58%), Gaps = 5/295 (1%)
Query: 18 EEFEELLRSAGYEILAIVEQVREEHPRFN-IGPGKLEEIKELVRELNPDKVVFANRLTPS 76
EE L ++A ++L V Q R IG GK+EE+K LV EL D ++F + L+PS
Sbjct: 2 EELASLTKTADGKVLTSVTQKRNRADAATYIGKGKVEELKALVEELEADLLIFNDELSPS 61
Query: 77 QAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELP-LVKEAIRRIKMG 135
Q +L + V +ID+ QL+L+I KRA ++E KLQ+ELA LQY LP L + I + G
Sbjct: 62 QLKSLATAIEVKMIDRTQLILDILAKRARTREGKLQIELAQLQYALPRLTGQGINLSRQG 121
Query: 136 DRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEGFVLVALAGYTN 195
G +G GE ++ +HIR R+ +I ++ + R R++R++ G + +AL GYTN
Sbjct: 122 GGIGARGPGETKLETDRRHIRNRIHEINTQVSTVIRHRSRYRERRKKNGVLQIALVGYTN 181
Query: 196 AGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRV-RGKMLLVTDTVGFIDGLPPFIVEAF 254
AGKST N L+ ++ +F TL TR+ + G +L++DTVGFI LP ++ AF
Sbjct: 182 AGKSTWFNRLTSADSYEEDLLFATLDPMTRKMVLPSGYSVLLSDTVGFIQDLPTTLIAAF 241
Query: 255 HSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRPMIIALNKID 309
STLEE+ +AD+I+ ++D+S K L +L EL+A D PM+ A NK D
Sbjct: 242 RSTLEEVKEADLILHLIDSSNEDYAGHEK--TVLRLLEELEADDIPMLTAYNKRD 294
>pir||T44348 GTP binding protein [imported] - Clostridium histolyticum
>gi|3868866|dbj|BAA34254.1| (AB014075) GTPase
[Clostridium histolyticum]
Length = 596
Score = 188 bits (472), Expect = 1e-46
Identities = 143/422 (33%), Positives = 222/422 (51%), Gaps = 37/422 (8%)
Query: 16 SREEFEELLRSAGYEILAIVEQVREEHPR-FNIGPGKLEEIKELVRELNPDKVVFANRLT 74
S EE EEL + E + + Q RE F +G GK++EI ++ + V+F LT
Sbjct: 192 SLEELEELAEACNVETVCSIFQRRERADNAFLVGSGKVDEISMALQAYKGNVVIFDEELT 251
Query: 75 PSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQY-ELPLVKEAIRRIK 133
+Q NL + L +ID+ L+LEIF RA S+EAKLQVELA L+Y L+ +
Sbjct: 252 GAQVRNLEENLGTKVIDRTTLILEIFASRARSREAKLQVELAQLRYRSARLIGLGTILSR 311
Query: 134 MGDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEGFVLVALAGY 193
G G +G GE ++ + IR R+ ++ EL+KI S REI+R KR ++L GY
Sbjct: 312 TGGGIGTRGPGEKKLEIDKRRIRERITELSRELKKITSIREIQRDKRVRGNIPKISLVGY 371
Query: 194 TNAGKSTLLNAL----------SGDYVEAKNQMFTTLSTTTRRFRV-RGKMLLVTDTVGF 242
TN GKSTL N L + + V N +F TL TTTR + G+ ++DTVGF
Sbjct: 372 TNTGKSTLRNKLCELTPVKENINKEKVFEANMLFATLDTTTRAIALPDGRACTLSDTVGF 431
Query: 243 IDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLD----VLRELKALD 298
I LP +VE+F STLEE+V +++++ V+D+S K + +D VL +L
Sbjct: 432 IRKLPHDLVESFKSTLEEVVNSNLLLHVVDSSS------EKLYEQIDAVEMVLSQLGVDP 485
Query: 299 RPMIIALNKIDLVSEEDVQEKELLLRELLDGRTNAIGIAKISAK-HKKLEELYELIDRAL 357
+ I+ LNKID +++E++++ EL L N + ISAK + L+ + I L
Sbjct: 486 KECILVLNKIDKLTKEELEDIELKL--------NKYKLVTISAKTGENLDLILNAICENL 537
Query: 358 TKLPKFQTFEIKVKDPSKLGKILAMLHSMGEVLEVSYGNE-TRIRAYIQTGLIRELNKLG 416
+ + TF I + K + +H +VL+ +Y ++ T+I+A + + + +
Sbjct: 538 PQTLREITFLIPYTEQGK----ASFIHRNAKVLDENYEDDGTKIKALVDDEVYNKCMEYE 593
Query: 417 VK 418
VK
Sbjct: 594 VK 595
>gb|AAK40607.1| GTP-binding protein (hflX) [Sulfolobus solfataricus]
Length = 356
Score = 187 bits (471), Expect = 2e-46
Identities = 115/351 (32%), Positives = 199/351 (55%), Gaps = 13/351 (3%)
Query: 18 EEFEE----LLRSAGYEILAIVEQVREEHPRFNIGPGKLEEIKELVRELNPDKVVFANRL 73
+EFEE L+ A Y++ +I + + + +F I KL++IK + ++ +L
Sbjct: 10 KEFEEEAIALVEGANYKVTSIYKLPKSPNVKFYIQYDKLQQIKN---DEEISTLIIFEQL 66
Query: 74 TPSQAYNLWKELR-VDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELPLVKEAIRRI 132
P N+ +EL+ +++DK L+LEIF A SKEAK+Q+ELA L+YELP++KE +
Sbjct: 67 KPRHFINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIELARLKYELPIIKETYTKS 126
Query: 133 KMGDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEGFVLVALAG 192
K+G++ G G G Y V K + R+ K+ ELE I+ +E + + + + G
Sbjct: 127 KIGEQQGPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVG 186
Query: 193 YTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVRGKMLLVTDTVGFIDGLPPFIVE 252
YTN+GK++L N+L+G + ++FTT+S + + +++ DTVGFI G+PP IV+
Sbjct: 187 YTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVD 246
Query: 253 AFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRPMIIALNKIDLVS 312
AF TL E +D ++LV+D++ + +S ++LRE+ +P+++ LNKID ++
Sbjct: 247 AFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306
Query: 313 EEDVQEKEL---LLRELLDGRTNAIGIAKISAKHKKLEELYELIDRALTKL 360
+ ++ +L L +EL + I I+ + K LE L + I + T+L
Sbjct: 307 GDLYKKLDLVEKLSKELYSPIFDVIPISAL--KRTNLELLRDKIYQLATQL 355
>pir||S72938 hflX protein - Mycobacterium leprae >gi|467091|gb|AAA17274.1|
(U00019) hflX; B2235_C2_202 [Mycobacterium leprae]
Length = 518
Score = 185 bits (465), Expect = 8e-46
Identities = 133/413 (32%), Positives = 222/413 (53%), Gaps = 32/413 (7%)
Query: 14 RVSREEFEELLRSAGYEILAIVEQVREE-HPRFNIGPGKLEEIKELVRELNPDKVVFANR 72
+ S E L +AG ++L + Q R+ P IG GK E++E+V D V+
Sbjct: 109 QASMAELATLAETAGSQVLEGLIQRRDRPDPSTYIGSGKAAELREVVLATGADTVICDGE 168
Query: 73 LTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELPLVK---EAI 129
L+P+Q L K ++V +ID+ L+L+IF + A S+E K QV LA + Y LP ++ E++
Sbjct: 169 LSPAQLTALEKAVKVKVIDRTALILDIFAQHATSREGKAQVLLAQMAYMLPRLRGWGESM 228
Query: 130 RRIKMGDRAG-------FKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREE 182
R ++G RAG +G GE ++ + IR RM K++ ++ ++ R+ +R +R
Sbjct: 229 SR-QVGGRAGGSGGGVGLRGPGETKIETDRRRIRERMAKLRRDIGAMKQARDTQRSRRLH 287
Query: 183 EGFVLVALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRV-RGKMLLVTDTVG 241
+A+ GYTNAGKS++LNAL+G +V ++ +F TL TTR G+ + TDTVG
Sbjct: 288 SDIPSIAIVGYTNAGKSSVLNALTGAWVLVQDALFVTLEPTTRHAEFDNGQPFVFTDTVG 347
Query: 242 FIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASE--PWREVRRKFFASLDVLRELK--AL 297
F+ LP +VEAF STLEE+V AD+++ V+D S+ P ++ +V+ + + +
Sbjct: 348 FVRHLPTQLVEAFRSTLEEVVDADLLLHVVDGSDANPLAQINAVRQVIFEVISDHQDGGV 407
Query: 298 DRP-MIIALNKIDLVSEEDVQEKELLLRELLDGRTNAIGIAKISAKHKKLEELYELIDRA 356
+ P ++ +NKID S L+L +L G A+ I+ + + +++ R
Sbjct: 408 EVPHELLVVNKIDAAS-------ALMLAKLRHGLPGAVFIS------ARTGDGIDVLRRR 454
Query: 357 LTKLPKFQTFEIKVKDPSKLGKILAMLHSMGEVLEVSY-GNETRIRAYIQTGL 408
+ +L + V P G ++A LH+ G V + + N TRI+A + L
Sbjct: 455 IAELVVATDTAVDVVIPYDRGDLVARLHANGRVQQAEHNSNGTRIKARVPVAL 507
>pir||F82848 GTP-binding protein XF0088 [imported] - Xylella fastidiosa (strain
9a5c) >gi|9104866|gb|AAF82901.1|AE003863_3 (AE003863)
GTP-binding protein [Xylella fastidiosa]
Length = 450
Score = 183 bits (459), Expect = 4e-45
Identities = 126/380 (33%), Positives = 203/380 (53%), Gaps = 18/380 (4%)
Query: 18 EEFEELLRSAGYEIL-AIVEQVREEHPRFNIGPGKLEEIKELVRELNPDKVVFANRLTPS 76
EEF +L RSAG + ++ ++ +P IG GKL+EIK D ++ + L+P
Sbjct: 28 EEFADLTRSAGATVAGSLAVRINRPNPSTLIGSGKLKEIKATADATGADLILINHSLSPV 87
Query: 77 QAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELPLVKEAIRRIKM-- 134
Q NL K L +ID+ L+L+IF +RA S E KLQVELA L++ + ++
Sbjct: 88 QERNLEKSLERRVIDRTGLILDIFAQRACSHEGKLQVELAQLRHLATRLVRGWTHLERQR 147
Query: 135 GDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEGFVLVALAGYT 194
G G +G GE Q+ + ++ R+ +++ L K+ +R R+ R +AL GYT
Sbjct: 148 GGAIGLRGPGETQLETDRRLLQKRVEQLQKRLSKVEVQRTQMRRARVRSEVPRIALVGYT 207
Query: 195 NAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVRGKMLLVTDTVGFIDGLPPFIVEAF 254
N+GKSTL NAL+G +Q+F TL RR + G ++ DTVGF+ LP +V AF
Sbjct: 208 NSGKSTLFNALTGASAYTADQLFATLDPKVRRIVLPGSSAMLADTVGFVRHLPHELVAAF 267
Query: 255 HSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRPMIIALNKIDLVSEE 314
STL E +AD+++ V+DA++P RE R +VL+ + A + P ++ NKID +
Sbjct: 268 RSTLSEAREADLLLHVIDAADPLREER--IDQVDEVLQAIGAGELPQLLVFNKIDCIEGA 325
Query: 315 DVQEKELLLRELLDGRTNAIGIAKI--SAKH-KKLEELYELIDRALTKLPKFQTFEIKVK 371
+V++ + DG + ++ SA+H +E L +++D L K Q + +++
Sbjct: 326 EVRQ------DTQDGIPDQARRERVWLSARHGHGVELLQQVLDHRL----KMQNVQGELR 375
Query: 372 DPSKLGKILAMLHSMGEVLE 391
G++ A LH + V E
Sbjct: 376 LLPSAGRLRARLHELKGVRE 395
>dbj|BAB06081.1| (AP001515) unknown conserved protein [Bacillus halodurans]
Length = 418
Score = 181 bits (455), Expect = 1e-44
Identities = 127/367 (34%), Positives = 192/367 (51%), Gaps = 17/367 (4%)
Query: 16 SREEFEELLRSAGYEILAIVEQVREE-HPRFNIGPGKLEEIKELVRELNPDKVVFANRLT 74
S EE E L +A ++ + Q RE P IG GKL+E+ + E D V+ L+
Sbjct: 30 SLEELEALTLTAQGTVIDRLTQKREAIEPATYIGRGKLDELAIKMEEQEADLVIVNGELS 89
Query: 75 PSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELP-LVKEAIRRIK 133
SQ NL L V +ID+ QL+L+IF RA S+E KLQVELA L Y LP +V + +
Sbjct: 90 GSQVRNLTNRLGVRVIDRTQLILDIFAGRAKSREGKLQVELAQLNYLLPRIVGQGQGLSR 149
Query: 134 MGDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEGFVLVALAGY 193
+G G +G GE ++ +HIR RM I +L+ R+ R +RE +AL GY
Sbjct: 150 LGGGIGTRGPGETKLETDRRHIRKRMADIDKQLKHTVKHRDRYRARRERNQTFRIALVGY 209
Query: 194 TNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRV-RGKMLLVTDTVGFIDGLPPFIVE 252
TNAGKSTLLN L+ ++ +F TL TR+ R+ G ++++DTVGFI+ LP +V
Sbjct: 210 TNAGKSTLLNRLTASDSYEEDLLFATLDPMTRKMRLPSGMEVILSDTVGFINQLPTTLVA 269
Query: 253 AFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRPMIIALNKIDLVS 312
AF STLEE+ AD+++ V+D S + + + L L +L+ M++ NK D +
Sbjct: 270 AFRSTLEEVKHADLLLHVVDRSSEQLQAHMETVSEL--LHQLEVDQSQMLVVYNKADKPN 327
Query: 313 EEDVQEKELLLRELLDGRTNAIGIAKISAKHKKLEELYELIDRALTKLPKFQTFEIKVKD 372
+ + GI + K + ++ L ++I+R L L E+ +
Sbjct: 328 LPIIPVHQ------------QNGIEMSAHKREDIQRLRQMIERTLVDLFTPYVTELASDE 375
Query: 373 PSKLGKI 379
+KL K+
Sbjct: 376 GNKLAKL 382
>pir||H75555 GTP-binding protein HflX - Deinococcus radiodurans (strain R1)
>gi|6457805|gb|AAF09728.1|AE001876_5 (AE001876)
GTP-binding protein HflX [Deinococcus radiodurans]
Length = 525
Score = 177 bits (444), Expect = 2e-43
Identities = 128/362 (35%), Positives = 194/362 (53%), Gaps = 30/362 (8%)
Query: 18 EEFEELLRSAGYEILAIVEQV--REEHPRFNIGPGKLEEIKELVRELNPDKVVFANRLTP 75
EE EL R+AG E++ E + R P +G GKLEE+ L+ D ++F L P
Sbjct: 160 EELGELARTAGAEVV-YKELIYRRNLKPGTLVGAGKLEELTSKAYHLDADLLIFGQELGP 218
Query: 76 SQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELPLVKEAIRRIKM- 134
+QA + + ++D+ QL+L+IF A E++LQVELA L+Y P + A ++
Sbjct: 219 AQAREIEAATGLKVVDRTQLILDIFALHAQGVESRLQVELAQLRYMKPRLLGAGAQLSRI 278
Query: 135 --------GDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEGFV 186
G G +G GE ++ + I R+ ++ +LE + RE RRK RE
Sbjct: 279 GGGGGSAGGGAIGTRGPGETKLELDRRRINDRLSFLEKQLEGVSQRREERRKSRERNDVP 338
Query: 187 LVALAGYTNAGKSTLLNALSGDYVE-----AKNQMFTTLSTTTRRFRVRG-KMLLVTDTV 240
+V++ GYTNAGKSTLLN+ + E A+N++F TL T+R+ + G ++ TDTV
Sbjct: 339 VVSIVGYTNAGKSTLLNSFTHAAEEPRRVLAENKLFATLRPTSRQGYIEGIGQVIFTDTV 398
Query: 241 GFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRP 300
GFI LP + AF STLEEI AD+++ V+DA+ P E ++ A +L +L D P
Sbjct: 399 GFIRDLPKDLSRAFRSTLEEIGDADVLLHVVDAASPGAE--QRLDAVNRILDDLGFRDMP 456
Query: 301 MIIALNKIDLVSEEDVQEKELLLRELLDGRTNAIGIAKISAKHKKLEELYELIDRALTKL 360
++ALNK D E E+L RE RT I ++ + K+ L EL E + A+ +
Sbjct: 457 TVVALNKADRA------EPEVLARE--QERTGGIPVSAL--KNIGLTELKEALGDAVASV 506
Query: 361 PK 362
+
Sbjct: 507 QR 508
>sp|P25519|HFLX_ECOLI GTP-BINDING PROTEIN HFLX >gi|1361024|pir||S56398 probable
GTP-binding protein hflX - Escherichia coli
>gi|436156|gb|AAC43398.1| (U00005) putative GTPase
required for high frequency lysogenization by
bacteriophage lambda [Escherichia coli]
>gi|537014|gb|AAA97069.1| (U14003) putative GTPase
required for high frequency lysogenization by
bacteriophage lambda; TTG start codon [Escherichia coli]
>gi|1790615|gb|AAC77130.1| (AE000489) GTP - binding
subunit of protease specific for phage lambda cII
repressor [Escherichia coli K12]
Length = 426
Score = 176 bits (443), Expect = 3e-43
Identities = 113/300 (37%), Positives = 175/300 (57%), Gaps = 7/300 (2%)
Query: 18 EEFEELLRSAGYEILAIVEQVREE-HPRFNIGPGKLEEIKELVRELNPDKVVFANRLTPS 76
+EFE L+ SAG E L ++ R+ HP++ +G GK EI E V+ V+F + L+P+
Sbjct: 28 QEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHALSPA 87
Query: 77 QAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQY-ELPLVKEAIRRIKMG 135
Q NL + +ID+ L+L+IF +RA + E KLQVELA L++ LV+ +
Sbjct: 88 QERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQK 147
Query: 136 DRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEGFVLVALAGYTN 195
G +G GE Q+ + +R R+ +I+ LE++ +RE R+ R + V+L GYTN
Sbjct: 148 GGIGLRGPGETQLETDRRLLRNRIVQIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTN 207
Query: 196 AGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVR--GKMLLVTDTVGFIDGLPPFIVEA 253
AGKSTL N ++ V A +Q+F TL T RR V G+ +L DTVGFI LP +V A
Sbjct: 208 AGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVL-ADTVGFIRHLPHDLVAA 266
Query: 254 FHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRPMIIALNKIDLVSE 313
F +TL+E +A +++ V+DA++ V+ A VL E+ A + P ++ +NKID++ +
Sbjct: 267 FKATLQETRQATLLLHVIDAADV--RVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLED 324
>pir||D81835 hypothetical protein NMA1445 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7380098|emb|CAB84681.1|
(AL162756) hypothetical protein NMA1445 [Neisseria
meningitidis Z2491]
Length = 369
Score = 176 bits (442), Expect = 4e-43
Identities = 109/300 (36%), Positives = 171/300 (56%), Gaps = 5/300 (1%)
Query: 19 EFEELLRSAGYEILAIVEQVREE-HPRFNIGPGKLEEIKELVRELNPDKVVFANRLTPSQ 77
E EL+++AG + + + R+ H +G GK E+ E V D VVF + LTP+Q
Sbjct: 23 EAVELVKAAGGDSVRVETAKRDRPHTALFVGTGKAAELSEAVAADGIDLVVFNHELTPTQ 82
Query: 78 AYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELPLVKEAIRRIK-MGD 136
NL K L+ ++D+ L+L IF +RA ++E +LQVELA L + + ++
Sbjct: 83 ERNLEKILQCRVLDRVGLILAIFARRARTQEGRLQVELAQLSHLAGRLIRGYGHLQSQRG 142
Query: 137 RAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEGFVLVALAGYTNA 196
G KG GE ++ + I +R+ +K +L ++ +R +RRK RE AL GYTN
Sbjct: 143 GIGMKGPGETKLETDRRLIAHRINALKKQLANLKKQRALRRKSRESGTIKTFALVGYTNV 202
Query: 197 GKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVRGK-MLLVTDTVGFIDGLPPFIVEAFH 255
GKS+L N L+ + AK+Q+F TL TT RR + + +++TDTVGF+ LP ++ AF
Sbjct: 203 GKSSLFNRLTKSGIYAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDLPHKLISAFS 262
Query: 256 STLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRPMIIALNKIDLVSEED 315
+TLEE +AD+++ V+DA+ P ++ +VL+E+ A D P I NK DL+ E+
Sbjct: 263 ATLEETAQADVLLHVVDAAAP--NSGQQIEDVENVLQEIHAGDIPCIKVYNKTDLLPSEE 320
>pir||G71521 probable GTP binding protein - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3328804|gb|AAC67975.1| (AE001311) GTP
Binding Protein [Chlamydia trachomatis]
Length = 447
Score = 174 bits (436), Expect = 2e-42
Identities = 120/316 (37%), Positives = 179/316 (55%), Gaps = 14/316 (4%)
Query: 9 KSRRERVSREEFEELLRSAGYEILAIVEQ----VREEHPRFNIGPGKLEEIKELVRELNP 64
++ ++RV E EEL+ A L+++E +R F + GKLEEI+ ++ E
Sbjct: 41 RAEQDRVP-EYVEELISLANSCDLSVLETCTWLLRAPSSSFYLNEGKLEEIERILEEFPT 99
Query: 65 -DKVVFANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELP 123
++ ++PSQ NL K LRV ++D+ +L+LEIF RA + EA LQVELA +Y LP
Sbjct: 100 IGTLLIDEEISPSQQRNLEKRLRVVVLDRTELILEIFASRALTAEAGLQVELAQARYLLP 159
Query: 124 LVKEA---IRRIKMGDRAG--FKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRK 178
+K + R K G G KG GE Q+ + +R R+ K+ +L+ + +RE RRK
Sbjct: 160 RLKRMWGHLSRQKSGGSGGGFVKGEGEKQIELDRRIVRERIHKLSRDLKNVERQREERRK 219
Query: 179 KREEEGFVLVALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVR-GKMLLVT 237
++ AL GYTN+GKSTLLN L+ +N++F TL TRR + G+ +L+T
Sbjct: 220 AKKRNQIPTFALIGYTNSGKSTLLNLLTSADTYVENKLFATLDPKTRRCVLPCGQRVLLT 279
Query: 238 DTVGFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKAL 297
DTVGFI LP +V AF STLE ++ DI++ V+DAS P + +L+EL
Sbjct: 280 DTVGFIRKLPHTLVAAFKSTLEAALQEDILLHVVDASHPL--ALEYVETTKAILQELGIT 337
Query: 298 DRPMIIALNKIDLVSE 313
+I LNK+D V++
Sbjct: 338 QPQVITVLNKMDKVAD 353
>pir||F81678 GTP-binding protein HflX TC0658 [imported] - Chlamydia muridarum
(strain Nigg) >gi|7190694|gb|AAF39482.1| (AE002334)
GTP-binding protein HflX [Chlamydia muridarum]
Length = 447
Score = 174 bits (436), Expect = 2e-42
Identities = 124/326 (38%), Positives = 181/326 (55%), Gaps = 14/326 (4%)
Query: 9 KSRRERVSREEFEELLRSAGYEILAIVEQ----VREEHPRFNIGPGKLEEIKELVRELNP 64
++ +E+VS E EEL+ A L+++E +R + G+LEEI+ ++ E
Sbjct: 41 RAEQEKVS-EYIEELVSLANSCDLSVLETCTWLLRSPSSSLYLNEGRLEEIERILEEFPT 99
Query: 65 -DKVVFANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELP 123
++ ++PSQ NL K L+V ++D+ +L+LEIF RA + EA LQVELA +Y LP
Sbjct: 100 IGTLLIDEEISPSQQRNLEKRLQVVVLDRTELILEIFASRALTAEAGLQVELAQARYLLP 159
Query: 124 LVKEA---IRRIKMGDRAG--FKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRK 178
+K + R K G G KG GE Q+ + +R R+ K+ EL+ + +R+ RRK
Sbjct: 160 RLKRMWGHLSRQKSGGSGGGFVKGEGEKQIELDRRIVRERIHKLSKELKNVERQRKERRK 219
Query: 179 KREEEGFVLVALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVR-GKMLLVT 237
++ AL GYTN+GKSTLLN L+ A+N++F TL TRR + G+ +L+T
Sbjct: 220 AKKRNQIPTFALIGYTNSGKSTLLNLLTSAETYAENKLFATLDPKTRRCVLPCGQRVLLT 279
Query: 238 DTVGFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKAL 297
DTVGFI LP +V AF STLE + DI++ V+DAS P + +L EL
Sbjct: 280 DTVGFIRKLPHTLVAAFKSTLEAALHEDILLHVVDASHPL--ALEHVETTKAILLELGIE 337
Query: 298 DRPMIIALNKIDLVSEEDVQEKELLL 323
+I LNKID V+ V K LL
Sbjct: 338 HPQVITVLNKIDKVTNGSVAAKLRLL 363
>pir||D82334 GTP-binding protein HflX VC0348 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9654764|gb|AAF93521.1| (AE004123)
GTP-binding protein HflX [Vibrio cholerae]
Length = 429
Score = 170 bits (427), Expect = 2e-41
Identities = 113/307 (36%), Positives = 173/307 (55%), Gaps = 5/307 (1%)
Query: 11 RRERVSREEFEELLRSAGYEILAIVEQVREE-HPRFNIGPGKLEEIKELVRELNPDKVVF 69
R E E + L+ SAG L +V R+ HP++ +G GK +EI E V+ + V+F
Sbjct: 21 RGEWEDLSECKMLISSAGVTTLHVVTGSRQTPHPKYFVGEGKAQEIAEAVQMHVANVVIF 80
Query: 70 ANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQY-ELPLVKEA 128
+ L+P+Q NL + + +ID+ L+L+IF +RA + E KLQVELA L++ L++
Sbjct: 81 NHALSPAQERNLERLCQCRVIDRTGLILDIFAQRARTHEGKLQVELAQLRHISTRLIRGW 140
Query: 129 IRRIKMGDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEGFVLV 188
+ G +G GE Q+ + +R R+ I LEK+ +RE R+ R +
Sbjct: 141 THLERQKGGIGLRGPGETQLETDRRLLRERIKAILRRLEKVAKQREQGRRARSRAEIPTI 200
Query: 189 ALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRF-RVRGKMLLVTDTVGFIDGLP 247
+L GYTNAGKSTL N ++ V A +Q+F TL T R+ V ++ DTVGFI LP
Sbjct: 201 SLVGYTNAGKSTLFNRITEAGVYAADQLFATLDPTLRKIDLVDVGPAVLADTVGFIRHLP 260
Query: 248 PFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRPMIIALNK 307
+V AF +TL+E +ADI++ V+DAS+ R A VL+E+ A + P ++ +NK
Sbjct: 261 HDLVAAFKATLQETQEADILLHVVDASD--ERFRENIQAVETVLQEIDAHEVPTLLVMNK 318
Query: 308 IDLVSEE 314
ID + E+
Sbjct: 319 IDNLEEQ 325
>pir||B72073 GTP binding protein - Chlamydophila pneumoniae (strain CWL029)
>gi|4376763|gb|AAD18618.1| (AE001633) GTP Binding
Protein [Chlamydophila pneumoniae CWL029]
>gi|8978848|dbj|BAA98684.1| (AP002546) GTP binding
protein [Chlamydophila pneumoniae J138]
Length = 472
Score = 169 bits (425), Expect = 4e-41
Identities = 118/336 (35%), Positives = 186/336 (55%), Gaps = 15/336 (4%)
Query: 3 AIGVIRKSRRERVSREEFEELLRSAGYEILAIVEQ----VREEHPRFNIGPGKLEEIKEL 58
A+ + +V E +EL+ A ++++E ++ I GKLEEI+E+
Sbjct: 37 AVASYQNKTDSQVVEEHLDELISLADSCGISVLETRSWILKTPSASTYINVGKLEEIEEI 96
Query: 59 VREL-NPDKVVFANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELAN 117
++E + ++ +TPSQ NL K L + ++D+ +L+LEIF RA + EA +QV+LA
Sbjct: 97 LKEFPSIGTLIIDEEITPSQQRNLEKRLGLVVLDRTELILEIFSSRALTAEANIQVQLAQ 156
Query: 118 LQYELPLVKEA---IRRIKMGDRAG--FKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSE 172
+Y LP +K + R K G +G KG GE Q+ + +R R+ K+ +L+ + +
Sbjct: 157 ARYLLPRLKRLWGHLSRQKSGGGSGGFVKGEGEKQIELDRRMVRERIHKLSAQLKAVIKQ 216
Query: 173 REIRRKKREEEGFVLVALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRV-RG 231
R RRK + G AL GYTN+GKSTLLN L+ ++++F TL TR+ + G
Sbjct: 217 RAERRKVKSRRGIPTFALIGYTNSGKSTLLNLLTAADTYVEDKLFATLDPKTRKCVLPGG 276
Query: 232 KMLLVTDTVGFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVL 291
+ +L+TDTVGFI LP +V AF STLE D+++ V+DAS P + D+
Sbjct: 277 RHVLLTDTVGFIRKLPHTLVAAFKSTLEAAFHEDVLLHVVDASHPL--ALEHVQTTYDLF 334
Query: 292 RELKALDRPMII-ALNKIDLVSEEDVQEKELLLREL 326
+ELK +++P II LNK+D + + + K LL L
Sbjct: 335 QELK-IEKPRIITVLNKVDRLPQGSIPMKLRLLSPL 369
>pir||F81594 GTP-binding protein HflX, probable CP0276 [imported] -
Chlamydophila pneumoniae (strain AR39)
>gi|7189200|gb|AAF38134.1| (AE002186) GTP-binding
protein HflX, putative [Chlamydophila pneumoniae AR39]
Length = 472
Score = 169 bits (425), Expect = 4e-41
Identities = 118/336 (35%), Positives = 186/336 (55%), Gaps = 15/336 (4%)
Query: 3 AIGVIRKSRRERVSREEFEELLRSAGYEILAIVEQ----VREEHPRFNIGPGKLEEIKEL 58
A+ + +V E +EL+ A ++++E ++ I GKLEEI+E+
Sbjct: 37 AVASYQNKTDSQVVEEHLDELISLADSCGISVLETRSWILKTPSASTYINVGKLEEIEEI 96
Query: 59 VREL-NPDKVVFANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELAN 117
++E + ++ +TPSQ NL K L + ++D+ +L+LEIF RA + EA +QV+LA
Sbjct: 97 LKEFPSIGTLIIDEEITPSQQRNLEKRLGLVVLDRTELILEIFSSRALTAEANIQVQLAQ 156
Query: 118 LQYELPLVKEA---IRRIKMGDRAG--FKGMGEYQVHQYFKHIRYRMGKIKDELEKIRSE 172
+Y LP +K + R K G +G KG GE Q+ + +R R+ K+ +L+ + +
Sbjct: 157 ARYLLPRLKRLWGHLSRQKSGGGSGGFVKGEGEKQIELDRRMVRERIHKLSAQLKAVIKQ 216
Query: 173 REIRRKKREEEGFVLVALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRV-RG 231
R RRK + G AL GYTN+GKSTLLN L+ ++++F TL TR+ + G
Sbjct: 217 RAERRKVKSRRGIPTFALIGYTNSGKSTLLNLLTAADTYVEDKLFATLDPKTRKCVLPGG 276
Query: 232 KMLLVTDTVGFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVL 291
+ +L+TDTVGFI LP +V AF STLE D+++ V+DAS P + D+
Sbjct: 277 RHVLLTDTVGFIRKLPHTLVAAFKSTLEAAFHEDVLLHVVDASHPL--ALEHVQTTYDLF 334
Query: 292 RELKALDRPMII-ALNKIDLVSEEDVQEKELLLREL 326
+ELK +++P II LNK+D + + + K LL L
Sbjct: 335 QELK-IEKPRIITVLNKVDRLPQGSIPMKLRLLSPL 369
>gb|AAG19628.1| (AE005051) GTP-binding protein; HflX2 [Halobacterium sp. NRC-1]
Length = 288
Score = 157 bits (394), Expect = 2e-37
Identities = 101/271 (37%), Positives = 147/271 (53%), Gaps = 26/271 (9%)
Query: 142 GMGEYQVHQYFKHIRYRMGKIKDELEKIRSEREIRRKKREEEGFVLVALAGYTNAGKSTL 201
G+GEY + + I+ R+ +I+DEL I + RR+ R E GF LVALAGYTNAGKSTL
Sbjct: 2 GLGEYDESRE-QDIKARISRIRDELSNIEKTEQQRRETRRESGFDLVALAGYTNAGKSTL 60
Query: 202 LNALSGDYV---------------EAKNQMFTTLSTTTRRFRVRGKMLLVTDTVGFIDGL 246
L L+ D E+++ +FTTL TTTRR + + +L+TDTVGFI L
Sbjct: 61 LRRLAADVAVDENDDRHPDLDTTAESQDDLFTTLGTTTRRMELARRDVLLTDTVGFISDL 120
Query: 247 PPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRPMIIALN 306
P ++VE+F STLE + +AD+++LV+DASEP +++ K S D L E + P++ N
Sbjct: 121 PHWLVESFKSTLESVYQADLVLLVVDASEPLADIQEKLATSHDTLYERN--EAPIVTVFN 178
Query: 307 KIDLVSEEDVQEKELLLRELLDGRTNAIGIAKISAKHKKLEELYELIDRALTKLPKFQTF 366
K D V + + EK L L +A + LEEL E ID A LP +
Sbjct: 179 KTDRVEDAALAEKMEALAALAPA-----PVAVSARDASNLEELRERIDAA---LPARERE 230
Query: 367 EIKVKDPSKLGKILAMLHSMGEVLEVSYGNE 397
+ + +++ +H V V YG++
Sbjct: 231 RLVLPMTEDTMSVVSWVHDHAHVRTVDYGDQ 261
>gi|6912588 Pseudoautosomal GTP-binding protein-like [Homo sapiens]
>gi|6562623|emb|CAA74749.2| (Y14391) GTP-binding protein
[Homo sapiens]
Length = 403
Score = 138 bits (343), Expect = 2e-31
Identities = 104/356 (29%), Positives = 174/356 (48%), Gaps = 33/356 (9%)
Query: 48 GPGKLEEIKELVRELNPDKVVFAN--RLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAH 105
G G E + E +R VF N R+ L V++ D++ +VL IF A
Sbjct: 41 GKGNFEHLTEKIRGSPDVTCVFLNVERMAAPTKKELEAAWGVEVFDRFTVVLHIFRCNAR 100
Query: 106 SKEAKLQVELANLQYELPLVKEAIRRIKMGDRAGF-KGMGEYQVHQYFKHIRYRMGKIKD 164
+KEA+LQV LA + +K + + G + + G GE + + +R + KI+
Sbjct: 101 TKEARLQVALAEMPLHRSNLKRDVAHLYRGVGSRYIMGSGESFMQLQQRLLREKEAKIRK 160
Query: 165 ELEKIRSEREIRRKKREEEGFVLVALAGYTNAGKSTLLNALSGD-YVEAKNQMFTTLSTT 223
L+++R +R + R++R F ++++ GYTN GK+TL+ AL+GD ++ ++Q+F TL T
Sbjct: 161 ALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIKALTGDAAIQPRDQLFATLDVT 220
Query: 224 TRRFRVRGKM-LLVTDTVGFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRR 282
+ +M +L DT+GF+ LP ++E+F +TLE++ +D+I+ V D S P E+++
Sbjct: 221 AHAGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDVAHSDLILHVRDVSHPEAELQK 280
Query: 283 KFFASLDVLRELKALDRP------MIIALNKIDLVSEEDVQEKELLLRELLDGRTNAIGI 336
VL L+ L P M+ NK+DLV E ++ L G
Sbjct: 281 -----CSVLSTLRGLQLPAPLLDSMVEVHNKVDLVPGYSPTEPNVVPVSALRGH------ 329
Query: 337 AKISAKHKKLEELYELIDRALTKLPKFQTFEIKVKDPSKLGKILAMLHSMGEVLEV 392
L+EL +D A+ K Q ++V+ G L+ L+ V EV
Sbjct: 330 --------GLQELKAELDAAVLKATGRQILTLRVR---LAGAQLSWLYKEATVQEV 374
>gb|AAF56472.1| (AE003752) CG5116 gene product [Drosophila melanogaster]
Length = 567
Score = 138 bits (343), Expect = 2e-31
Identities = 100/285 (35%), Positives = 155/285 (54%), Gaps = 28/285 (9%)
Query: 48 GPGKLEEIKELVRELNPDK-----VVFANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEK 102
G GKL E+KELV EL ++ V L+ +Q L E R+ ++D++ +V++I
Sbjct: 201 GSGKLVELKELVAELRQERHLTCLFVSKGTLSFAQKRFLEAEFRLPVMDRYSVVIQILRL 260
Query: 103 RAHSKEAKLQVELANLQYELPLVKEAIRRIKMGDRAGFKGMGEYQVHQYFKHI-RYRMGK 161
A S EAKLQV +A L Y K+A + R G Y + K I R R K
Sbjct: 261 HATSAEAKLQVAMAELPYIWAQAKDA--SVTQTRRQG------YALTDLQKEILRTRERK 312
Query: 162 IKDELEKIRSEREIRRKKREEEGFVLVALAGYTNAGKSTLLNALS-GDYVEAKNQMFTTL 220
++ EL+++R +R++ R+KR+++ + +VA+ GYTNAGK++L+ AL+ D ++ +NQ+F TL
Sbjct: 313 LRAELDRVRRQRQLLRQKRKQQNYPIVAVVGYTNAGKTSLIKALTVEDALQPRNQLFATL 372
Query: 221 STTTRRFRVRGKM-LLVTDTVGFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWRE 279
T + + ++ DTVGF+ LP + E F +TLE+ + AD+IV V D S P
Sbjct: 373 DVTAHAGCLPCNLEVIYMDTVGFMSDLPTGLFECFVATLEDAMLADVIVHVQDLSHPCHA 432
Query: 280 VRRKFFASLDVLREL----------KALDRPMIIALNKIDLVSEE 314
+R + LR L + P+I NK DLVS+E
Sbjct: 433 AQRSHVEA--TLRSLAFNVAGGDSTASQLPPIINVYNKCDLVSQE 475
>pir||T46039 hypothetical protein T16K5.80 - Arabidopsis thaliana
>gi|6723418|emb|CAB66911.1| (AL132965) putative protein
[Arabidopsis thaliana]
Length = 1184
Score = 127 bits (315), Expect = 3e-28
Identities = 100/287 (34%), Positives = 149/287 (51%), Gaps = 35/287 (12%)
Query: 68 VFANR-LTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQY------ 120
VF N LT Q NL + ++D+ L++EIF AH+KEAKLQ ELA L Y
Sbjct: 763 VFVNAILTAIQQRNLERIWAKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYNKSRLV 822
Query: 121 ---------------ELPLVKEAIRRIKMGDRAGFKG-MGEYQVHQYFKHIRYRMGKIKD 164
E +V R G GF G GE ++ + I R ++
Sbjct: 823 RVRGTDGRHTFGQFGEAEVVSARGRAGSKGTGGGFVGGAGETELQLQRRRISDRRIRLLS 882
Query: 165 ELEKIRSEREIRR---KKR---EEEGFVLVALAGYTNAGKSTLLNALSGDYVEAKNQMFT 218
++++ + R ++R KKR E E +A+ GYTNAGKSTL++AL+ + ++F
Sbjct: 883 QIKEAQRTRLLQRAGRKKRVGLEGESSGTIAVVGYTNAGKSTLISALTKTALYCNERLFA 942
Query: 219 TLSTTTRRFRV-RGKMLLVTDTVGFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPW 277
TL T + + G +L++DTVGFI LP +V+AF STLEE+V+AD+++ V+D++ P
Sbjct: 943 TLDPTLKSAHLPSGNFVLLSDTVGFISDLPIQLVKAFQSTLEEVVEADLLLHVVDSTAPN 1002
Query: 278 REVRRKFFASLDVLRELKALD---RPMIIALNKIDLVSEEDVQEKEL 321
E R L VL ++ + + MI NKID +E +EK L
Sbjct: 1003 IEEHRS--TVLHVLNQIGVPEEKLQNMIEVWNKIDYEEDEVEEEKYL 1047
>pir||T22287 hypothetical protein F46B6.4 - Caenorhabditis elegans
>gi|3877202|emb|CAA94821.1| (Z70780) similar to
GTP-binding protein~cDNA EST yk255b11.3 comes from this
gene~cDNA EST yk255b11.5 comes from this gene
[Caenorhabditis elegans]
Length = 468
Score = 104 bits (256), Expect = 3e-21
Identities = 86/316 (27%), Positives = 160/316 (50%), Gaps = 32/316 (10%)
Query: 67 VVFANRLTPSQAYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELPLVK 126
+V + L+PSQ L++ V I D++ +VL F++ A ++EA++Q+ +A E+P +K
Sbjct: 115 MVNVDALSPSQQQELYRIFEVPIFDRYNIVLATFKQFAKTEEARIQIAIA----EIPYIK 170
Query: 127 EAIRRIKMGDRAGFKGMGEYQVHQYFKHIRYRMGKIKDELEK-IRSE-REIRRKKREEEG 184
I + + + ++ I + +I + E+ +R E +++ RK + G
Sbjct: 171 HRIHALS--SKRLHSRPDILHIDSHYSDIDGDLNEILRKREQDLRKELKDVTRKNVGQLG 228
Query: 185 F-----VLVALAGYTNAGKSTLLNALSGDY-VEAKNQMFTTLSTTTRRFRV-RGKMLLVT 237
+VA+ GYTN+GK++L+ L+G + K+Q+F TL TT ++ G+ + T
Sbjct: 229 VRNSSDAVVAVVGYTNSGKTSLVKKLTGAASLTPKDQLFATLDTTRHLAKLPSGRSAVFT 288
Query: 238 DTVGFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEP-WREVRRKFFASLDVLRELKA 296
DT+GF+ LP ++ AF +TL + AD+I+ + D S P W+ A+L +
Sbjct: 289 DTIGFLSDLPMHLIAAFEATLAHVKSADVIIHLRDISNPDWKAQEEDVLATLKSIGVTDY 348
Query: 297 LDRPMIIAL-NKIDLVSEEDVQEKELLLRELLDGRTNAIGIAKISAK-HKKLEELYELID 354
+ II++ NKID S E N++ +IS K + EL ++I+
Sbjct: 349 VLNERIISVDNKIDKESAFPTSES-----------NNSV---RISCKTGDGMHELIDVIN 394
Query: 355 RALTKLPKFQTFEIKV 370
+T + K +T +++
Sbjct: 395 DKVTMVTKCKTIRLRL 410
>gb|AAC14113.1| (AF055859) GTP-binding protein HflX [Synechococcus PCC7002]
Length = 155
Score = 85.4 bits (208), Expect = 1e-15
Identities = 47/106 (44%), Positives = 68/106 (63%), Gaps = 1/106 (0%)
Query: 19 EFEELLRSAGYEILAIVEQVREE-HPRFNIGPGKLEEIKELVRELNPDKVVFANRLTPSQ 77
E L+ +AG E+L +EQ R HP+ +G GK+EEI V+ L + VVF L P+Q
Sbjct: 35 ELARLVDTAGGEVLLTLEQKRSTPHPQTVVGTGKVEEIALQVQTLGANLVVFDRDLXPAQ 94
Query: 78 AYNLWKELRVDIIDKWQLVLEIFEKRAHSKEAKLQVELANLQYELP 123
NL ++L V + D+ +++L+IF +RA S+ KLQVELA L+Y LP
Sbjct: 95 GRNLERQLGVKVCDRTEVILDIFAQRAQSRAGKLQVELAQLEYLLP 140
>pir||G64475 GTP-binding protein, GTP1/OBG-family - Methanococcus jannaschii
Length = 354
Score = 72.2 bits (174), Expect = 1e-11
Identities = 71/214 (33%), Positives = 109/214 (50%), Gaps = 28/214 (13%)
Query: 159 MGKIKDELEKIRSEREIRRKKREE-------EGFVLVALAGYTNAGKSTLLNALSGDYVE 211
+G++K LE+I E RE+ + V +AGY N GKSTLL L+G VE
Sbjct: 141 VGRVKSILEQIHPEMAFVAVAREKLKDLPTFKDLPTVVIAGYPNVGKSTLLKKLTGADVE 200
Query: 212 AKNQMFTTLSTTTRRFRVRGKMLLVTDTVGFIDGLPPFIVEAFHSTLEEIVK----ADII 267
+ FTT G++ +V DT G +D + E L+ I+ A++I
Sbjct: 201 INSYPFTTKGINVGYI---GEIQMV-DTPGLLDRP---LYERNDIELQAILALNYLANLI 253
Query: 268 VLVLDASEPWREVRRKFFASLDVLRELKALDR-PMIIALNKIDLVSEEDVQEKELLLREL 326
+ ++DASE + +++L+E+K L + P+++A+NKIDLV EE V+E E L+E+
Sbjct: 254 LFIIDASEFCGYTIEE---QINLLKEIKDLFKAPIVVAINKIDLVDEERVKEIEEKLKEV 310
Query: 327 LDGRTNAIGIAKISA-KHKKLEELYELIDRALTK 359
I KISA K L+EL E + + K
Sbjct: 311 -----GIEEILKISADKDIGLDELKERLKKIAIK 339
>gb|AAB99416.1| (U67581) GTP-binding protein, member of GTP1/OBG-family
[Methanococcus jannaschii]
Length = 350
Score = 72.2 bits (174), Expect = 1e-11
Identities = 71/214 (33%), Positives = 109/214 (50%), Gaps = 28/214 (13%)
Query: 159 MGKIKDELEKIRSEREIRRKKREE-------EGFVLVALAGYTNAGKSTLLNALSGDYVE 211
+G++K LE+I E RE+ + V +AGY N GKSTLL L+G VE
Sbjct: 137 VGRVKSILEQIHPEMAFVAVAREKLKDLPTFKDLPTVVIAGYPNVGKSTLLKKLTGADVE 196
Query: 212 AKNQMFTTLSTTTRRFRVRGKMLLVTDTVGFIDGLPPFIVEAFHSTLEEIVK----ADII 267
+ FTT G++ +V DT G +D + E L+ I+ A++I
Sbjct: 197 INSYPFTTKGINVGYI---GEIQMV-DTPGLLDRP---LYERNDIELQAILALNYLANLI 249
Query: 268 VLVLDASEPWREVRRKFFASLDVLRELKALDR-PMIIALNKIDLVSEEDVQEKELLLREL 326
+ ++DASE + +++L+E+K L + P+++A+NKIDLV EE V+E E L+E+
Sbjct: 250 LFIIDASEFCGYTIEE---QINLLKEIKDLFKAPIVVAINKIDLVDEERVKEIEEKLKEV 306
Query: 327 LDGRTNAIGIAKISA-KHKKLEELYELIDRALTK 359
I KISA K L+EL E + + K
Sbjct: 307 -----GIEEILKISADKDIGLDELKERLKKIAIK 335
>pir||A72397 thiophene oxidation protein ThdF-related GTPase - Thermotoga
maritima (strain MSB8)
>gi|4980765|gb|AAD35356.1|AE001709_2 (AE001709)
thiophene oxidation protein ThdF-related GTPase
[Thermotoga maritima]
Length = 450
Score = 71.8 bits (173), Expect = 1e-11
Identities = 76/257 (29%), Positives = 122/257 (46%), Gaps = 31/257 (12%)
Query: 108 EAKLQVELANLQYELPLVKEAIRRIKMGDRAGFKGMGEYQVH-QYFKHIRYRMGKIKDEL 166
E L++ L NL+ L +++RR + + + E +V Y I G++ L
Sbjct: 135 ETSLKLSLRNLKGGLRDFVDSLRRELI------EVLAEIRVELDYPDEIETNTGEVVTRL 188
Query: 167 EKIRSEREIRRKKREEEGFVL-----VALAGYTNAGKSTLLNAL-SGDYVEAKNQMFTTL 220
E+I+ E+ K+ + G +L + + G N GKSTLLN L + D + TT
Sbjct: 189 ERIK-EKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTR 247
Query: 221 STTTRRFRVRGKMLLVTDTVGFIDGLPPFIVE-AFHSTLEEIVKADIIVLVLDASEPWRE 279
+ +RG + + DT G + TL+EI KADI++ VLDAS P E
Sbjct: 248 DVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDE 307
Query: 280 VRRKFFASLDVLRELKALDRPMIIALNKIDLVSEEDVQEKELLLRELLDGRTNAIGIAKI 339
RK +L +K ++ ++ +NK+D+V E + E+E+ + D + KI
Sbjct: 308 EDRK------ILERIK--NKRYLVVINKVDVV--EKINEEEIKNKLGTDRH-----MVKI 352
Query: 340 SA-KHKKLEELYELIDR 355
SA K + LE+L E I R
Sbjct: 353 SALKGEGLEKLEESIYR 369
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.139 0.380
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141432163
Number of Sequences: 2977
Number of extensions: 5800474
Number of successful extensions: 28372
Number of sequences better than 1.0e-10: 36
Number of HSP's better than 0.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 28272
Number of HSP's gapped (non-prelim): 36
length of query: 423
length of database: 189,106,746
effective HSP length: 59
effective length of query: 364
effective length of database: 153,796,013
effective search space: 55981748732
effective search space used: 55981748732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)