BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0723 (argE-like) DE:Acetyl ornithine deacetylase
(354 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75087 acetyl ornithine deacetylase PAB0723 - Pyrococcus ab... 716 0.0
pir||C71057 hypothetical protein PH1153 - Pyrococcus horikoshii ... 682 0.0
gi|11498133 acetylornithine deacetylase (argE) [Archaeoglobus fu... 178 6e-44
pir||B82211 peptidase, M20A family VC1343 [imported] - Vibrio ch... 104 1e-21
pir||C70349 succinyl-diaminopimelate desuccinylase - Aquifex aeo... 102 5e-21
gb|AAK41759.1| Succinyl-diaminopimelate desuccinylase (dapE) [Su... 99 7e-20
gb|AAK41276.1| Acetylornithine deacetylase (argE-2) [Sulfolobus ... 99 7e-20
sp|Q57899|Y457_METJA HYPOTHETICAL PROTEIN MJ0457 >gi|2129295|pir... 92 1e-17
emb|CAA07459.1| (AJ007319) succinyl-diaminopimelate desuccinylas... 90 5e-17
pir||B82973 probable peptidic bond hydrolase PA5390 [imported] -... 89 6e-17
gb|AAK40507.1| Conserved hypothetical protein [Sulfolobus solfat... 89 8e-17
gb|AAC82366.1| (AF055904) acetylornithine deacetylase; ArgE [Myx... 89 1e-16
pir||H69588 acetylornithine deacetylase argE - Bacillus subtilis... 82 1e-14
gb|AAB81157.1| (AF006665) YokP [Bacillus subtilis] 82 1e-14
pir||G75160 acetyl ornithine deacetylase PAB0294 - Pyrococcus ab... 81 2e-14
sp|P23908|ARGE_ECOLI ACETYLORNITHINE DEACETYLASE (ACETYLORNITHIN... 81 2e-14
pir||H70608 probable succinyl-diaminopimelate desuccinylase - My... 80 5e-14
sp|Q46805|YGEY_ECOLI HYPOTHETICAL 44.8 KD PROTEIN IN KDUI-LYSS I... 78 2e-13
emb|CAC01340.1| (AL390975) succinyl-diaminopimelate desuccinylas... 78 2e-13
sp|Q59284|DAPE_CORGL SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE (SDA... 76 8e-13
prf||2106301A succinyl diaminopimelate desuccinylase [Corynebact... 76 8e-13
pir||E81307 succinyl-diaminopimelate desuccinylase (EC 3.5.1.18)... 76 8e-13
emb|CAB95013.1| (AJ252020) acetylornithinase (n2-acetyl-l-ornith... 75 1e-12
emb|CAB95019.1| (AJ252021) acetylornithinase (n2-acetyl-l-ornith... 74 2e-12
pir||C82049 acetylornithine deacetylase VC2645 [imported] - Vibr... 74 2e-12
pir||T41596 probable acetylornithine deacetylase - fission yeast... 73 7e-12
dbj|BAB06397.1| (AP001516) acetylornithine deacetylase [Bacillus... 72 1e-11
pir||H64486 hypothetical protein MJ1497 - Methanococcus jannasch... 71 3e-11
sp|P57155|ARGE_BUCAI ACETYLORNITHINE DEACETYLASE (ACETYLORNITHIN... 69 1e-10
>pir||A75087 acetyl ornithine deacetylase PAB0723 - Pyrococcus abyssi (strain
Orsay) >gi|5458510|emb|CAB49998.1| (AJ248286) Acetyl
ornithine deacetylase [Pyrococcus abyssi]
Length = 354
Score = 716 bits (1827), Expect = 0.0
Identities = 354/354 (100%), Positives = 354/354 (100%)
Query: 1 MNRMKTERAKEILLQLLKIPSPSGREDRIALYIMEFLHRLDYDVHIESDGEIIDLVVNPG 60
MNRMKTERAKEILLQLLKIPSPSGREDRIALYIMEFLHRLDYDVHIESDGEIIDLVVNPG
Sbjct: 1 MNRMKTERAKEILLQLLKIPSPSGREDRIALYIMEFLHRLDYDVHIESDGEIIDLVVNPG 60
Query: 61 AELFYEVHMDTIEPRAEPFVRGNIVYGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVF 120
AELFYEVHMDTIEPRAEPFVRGNIVYGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVF
Sbjct: 61 AELFYEVHMDTIEPRAEPFVRGNIVYGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVF 120
Query: 121 VSDEEKGGRGSALFMERYRPKMAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESG 180
VSDEEKGGRGSALFMERYRPKMAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESG
Sbjct: 121 VSDEEKGGRGSALFMERYRPKMAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESG 180
Query: 181 VNAIEQVFEMLQKLKELEPFKVKGKYFDPHIGIQELICENPYYLIPALCKGRLEARLLPN 240
VNAIEQVFEMLQKLKELEPFKVKGKYFDPHIGIQELICENPYYLIPALCKGRLEARLLPN
Sbjct: 181 VNAIEQVFEMLQKLKELEPFKVKGKYFDPHIGIQELICENPYYLIPALCKGRLEARLLPN 240
Query: 241 QEVEDVLDLIDPILDEYTIKYEYTEIWDGYELSEDEEIVQIAKSAMEVVGLDEFGAMRSW 300
QEVEDVLDLIDPILDEYTIKYEYTEIWDGYELSEDEEIVQIAKSAMEVVGLDEFGAMRSW
Sbjct: 241 QEVEDVLDLIDPILDEYTIKYEYTEIWDGYELSEDEEIVQIAKSAMEVVGLDEFGAMRSW 300
Query: 301 TDAINFTYNGTKTIVFGPGNLDISHTKHERIDVRDVVKASEFLLAVNDIVGNTS 354
TDAINFTYNGTKTIVFGPGNLDISHTKHERIDVRDVVKASEFLLAVNDIVGNTS
Sbjct: 301 TDAINFTYNGTKTIVFGPGNLDISHTKHERIDVRDVVKASEFLLAVNDIVGNTS 354
>pir||C71057 hypothetical protein PH1153 - Pyrococcus horikoshii
>gi|3257570|dbj|BAA30253.1| (AP000005) 354aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 354
Score = 682 bits (1740), Expect = 0.0
Identities = 330/354 (93%), Positives = 347/354 (97%)
Query: 1 MNRMKTERAKEILLQLLKIPSPSGREDRIALYIMEFLHRLDYDVHIESDGEIIDLVVNPG 60
M +MKTERAKEIL+QLLKIPSPSGREDR+ALYIMEFLH+L+YDVHIESDGEIIDLVVNPG
Sbjct: 1 MRKMKTERAKEILVQLLKIPSPSGREDRVALYIMEFLHKLNYDVHIESDGEIIDLVVNPG 60
Query: 61 AELFYEVHMDTIEPRAEPFVRGNIVYGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVF 120
AELF+EVHMDTI+PRAEPFVRGNIVYGTGASDIKGGIASILLMLEQL+KE KDLNVGIVF
Sbjct: 61 AELFFEVHMDTIDPRAEPFVRGNIVYGTGASDIKGGIASILLMLEQLRKEGKDLNVGIVF 120
Query: 121 VSDEEKGGRGSALFMERYRPKMAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESG 180
VSDEEKGGRGSALFMERYRPKMA+VLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESG
Sbjct: 121 VSDEEKGGRGSALFMERYRPKMAVVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESG 180
Query: 181 VNAIEQVFEMLQKLKELEPFKVKGKYFDPHIGIQELICENPYYLIPALCKGRLEARLLPN 240
+NAIEQ FEMLQKLK+LEPFK KGKYFDPHIGIQELICENPYYLIPALCKGRLEARLLP+
Sbjct: 181 INAIEQTFEMLQKLKDLEPFKAKGKYFDPHIGIQELICENPYYLIPALCKGRLEARLLPD 240
Query: 241 QEVEDVLDLIDPILDEYTIKYEYTEIWDGYELSEDEEIVQIAKSAMEVVGLDEFGAMRSW 300
QEVED+LDLIDPILDEYT+KYEYTEIWDGYELSEDEEIVQIAKSAM++VGLDEFGAMRSW
Sbjct: 241 QEVEDILDLIDPILDEYTVKYEYTEIWDGYELSEDEEIVQIAKSAMDMVGLDEFGAMRSW 300
Query: 301 TDAINFTYNGTKTIVFGPGNLDISHTKHERIDVRDVVKASEFLLAVNDIVGNTS 354
TDAINFTYNGTKTIVFGPGNLDISHTK ERIDVRDVVKASEFLLAVN+I GN S
Sbjct: 301 TDAINFTYNGTKTIVFGPGNLDISHTKQERIDVRDVVKASEFLLAVNEIFGNKS 354
>gi|11498133 acetylornithine deacetylase (argE) [Archaeoglobus fulgidus]
>gi|7482892|pir||B69315 acetylornithine deacetylase
(argE) homolog - Archaeoglobus fulgidus
>gi|2650099|gb|AAB90712.1| (AE001068) acetylornithine
deacetylase (argE) [Archaeoglobus fulgidus]
Length = 316
Score = 178 bits (448), Expect = 6e-44
Identities = 116/343 (33%), Positives = 181/343 (51%), Gaps = 35/343 (10%)
Query: 12 ILLQLLKIPSPSGREDRIALYIMEFLHRLDYDVHIESDGEIIDLVVNPGAELFYEVHMDT 71
+L +L++I SP+G E I ++ +FL Y V +G+ + +EL H+DT
Sbjct: 2 LLKKLVEIESPTGSEHEIKDFVRDFLESKGYSV---VEGQYF-ISTKSKSELIVSTHLDT 57
Query: 72 IEPRAEPFVRGNIVYGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVFVSDEEKGGRGS 131
+A G YGTG D K +A+IL + E+ ++ I F DEE+GG+GS
Sbjct: 58 TPVKAPFSTDGVYAYGTGVCDAKASVAAIL------EAAERGVDFTIAFFCDEEEGGKGS 111
Query: 132 ALFMERYR-PKMAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESGVNAIEQVFEM 190
F E++ MA+V+EPTDL++ H GN++ EV G ++HG+ PE GVNAIE+ FEM
Sbjct: 112 KEFAEKWSYGSMAVVMEPTDLKIASRHYGNLDLTVEVKGVQSHGSYPEMGVNAIEKAFEM 171
Query: 191 LQKLK---ELEPFKVKGKYFDPHIGIQELICENPYYLIPALCKGRLEARLLPNQEVEDVL 247
+ +LK ++ P K+ G D Y+IP C +L+ + P ++E+ L
Sbjct: 172 ISELKKHFKVTPLKIAGGSDD--------------YVIPDYCMVKLDVLIEPETKLEEAL 217
Query: 248 DLIDPILDEYTIKYEYTEIWDGYELSEDEEIVQIAKSAMEVVGLD-EFGAMRSWTDAINF 306
I E+ Y E+ + YE +E+ + AM GL+ E M SWTDA+N
Sbjct: 218 KEI-----EFLSNYGKYEVSNAYEGFISKEVAGFLERAMRAAGLEVEHTVMPSWTDALNL 272
Query: 307 TYNGTKTIVFGPGNLDISHTKHERIDVRDVVKASEFLLAVNDI 349
+ +V+GPG L + HT ER+ + DV KA + LL ++++
Sbjct: 273 K-DRYDVVVWGPGELHLCHTVRERVRLADVEKARDVLLKLSEM 314
>pir||B82211 peptidase, M20A family VC1343 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9655835|gb|AAF94501.1| (AE004214)
peptidase, M20A family [Vibrio cholerae]
Length = 368
Score = 104 bits (258), Expect = 1e-21
Identities = 101/368 (27%), Positives = 171/368 (46%), Gaps = 27/368 (7%)
Query: 1 MNRMKTERAKEILLQLLKIPSPSGREDRIALYIMEFLHRLDYDVH-IESDGEIID----- 54
M+ + T+R + LQL++I S SG E +IA + E L L + VH + E+ +
Sbjct: 1 MSLINTQRLVDHFLQLIQIDSESGNEKKIAETLAEQLGELGFTVHKLPVPAEVSNGFNLY 60
Query: 55 --LVVNPGAELFYEVHMDTIEP--RAEPFVRGNIVYGTG----ASDIKGGIASILLMLEQ 106
L + + HMDT++P EP + I+ G D K GIA+IL +
Sbjct: 61 ARLEGTLNDSILFSCHMDTVKPGIGIEPVIEDGIIRSKGNTILGGDDKSGIAAILEAVRV 120
Query: 107 LK-KEEKDLNVGIVFVSDEEKGGRGSALF-MERYRPKMAIVLE---PTDLEVHIAHAGNI 161
L+ ++ + I F EE G +GS F M + + + AIVL+ P V A G
Sbjct: 121 LRDSQQAHKTIEIAFTVHEEGGLKGSEHFDMSKVQAEKAIVLDTGGPIGTIVRAA-PGQQ 179
Query: 162 EAYFEVDGKEAH-GACPESGVNAIEQVFEMLQKLKELEPFKVKGKYFDPHIGIQELICEN 220
+ + GK AH G PE G++AI + + ++K L + G Q
Sbjct: 180 KIVALIKGKPAHAGLVPEDGISAIAVAADAITQMKLLRIDEETTANIGIVQGGQATNIVM 239
Query: 221 PYYLIPALCKGRLEARLLPNQEVEDVLDLIDPILDEY--TIKYEYTEIWDGYELSEDEEI 278
P I A + +A+L +V+ +++ + +++ T++ E T ++ ++L ED
Sbjct: 240 PELKIVAEARSLNDAKL--EAQVQHMIETFERAAEKHGATVEIESTRAYNAFKLEEDNAH 297
Query: 279 VQIAKSAMEVVGLDEFGAMR-SWTDAINFTYNGTKTIVFGPGNLDISHTKHERIDVRDVV 337
+Q K++ E +G++ + +DA NF G T+ G + HT E I + D+V
Sbjct: 298 IQAIKASFETIGIEPKTKLSGGGSDANNFNAKGLTTVNLSTGMAKV-HTTEEYIAIADMV 356
Query: 338 KASEFLLA 345
K +EF+ A
Sbjct: 357 KIAEFVCA 364
>pir||C70349 succinyl-diaminopimelate desuccinylase - Aquifex aeolicus
>gi|2983182|gb|AAC06782.1| (AE000695)
succinyl-diaminopimelate desuccinylase [Aquifex
aeolicus]
Length = 299
Score = 102 bits (253), Expect = 5e-21
Identities = 82/296 (27%), Positives = 139/296 (46%), Gaps = 28/296 (9%)
Query: 7 ERAKEILLQLLKIPSPSGREDRIALYIMEFLHRLDYDV-HIESDGEIIDLVVNPGAELFY 65
E KE L +L++IPS SG+E + Y+ L L + E + + +LV + G+E
Sbjct: 5 EAVKETLKELIRIPSVSGKEKGVLEYVENRLKSLGIPLKRQEIEKDRYNLVYDNGSEYLI 64
Query: 66 EVHMDTIEPRA-----EPFVRGNIVYGTGASDIKGGIASILLMLEQLKKE--EKDLNVGI 118
VH+DT+ P P +YG GASD+KG IAS++ +E KK+ EK+L V +
Sbjct: 65 SVHVDTVPPAGFRDAYRPKEVNGRIYGRGASDVKGAIASLITAVEWFKKDFPEKELPVSL 124
Query: 119 VFVSDEEKGGRGSALFMERY-----RPKMAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAH 173
FV DEE + +AL E + IVLEPT V G E ++ K AH
Sbjct: 125 AFVVDEE---QNTALGSENLPKCLNGKRKCIVLEPTYGLVCTKQYGAYEFSVKIKCKSAH 181
Query: 174 GACPESGVNAIEQVFEMLQKLKELEPFKVKGKYFDPHIGIQELICENPYYLIPALCKGRL 233
G+ E N ++ ++L KL+E+ + + + Y +P C+ L
Sbjct: 182 GSEFEKVENPVKVFIKLLNKLEEV---------LKREVNVIMVRSGTKVYTVPKTCEALL 232
Query: 234 EARLLPNQEVEDVLDLIDPILDEYTIKYEYTEIWDGYELSED---EEIVQIAKSAM 286
E ++ + E++ + ++ + E T +G+E ++ + ++ + K A+
Sbjct: 233 EFKVFEGERKEELEKKVQEVVSALNTECEITVKLEGFEEFQEFNTDGLLDVVKKAL 288
>gb|AAK41759.1| Succinyl-diaminopimelate desuccinylase (dapE) [Sulfolobus
solfataricus]
Length = 410
Score = 99.1 bits (243), Expect = 7e-20
Identities = 79/282 (28%), Positives = 137/282 (48%), Gaps = 23/282 (8%)
Query: 85 VYGTGASDIKGGIASILLMLEQLKKEE---KDLNVGIVFVSDEEKGGR---GSALFMER- 137
+YG GASD+K GI + + +E L++ + ++ V V DEE G G+ +++
Sbjct: 117 IYGRGASDMKSGIVAQIYAIEMLRRAKLLPSNIQVIQTIVPDEETVGNRNAGTYYLVQKG 176
Query: 138 --YRPKMAIVLEPTDLE-VHIAHAGNIEAYFEVDGKEAHGACPESGVNAIEQVFEMLQKL 194
I EPT + V H G I A V GK++HG P+ G++A++ M+++L
Sbjct: 177 IFKNVNYVIFTEPTGPDNVCNGHRGAIWAIVRVYGKKSHGGFPQLGIDAVKATSLMIEEL 236
Query: 195 KELEPFKVKGKYFDPHIGIQELI------CENPYYLIPALCKGRLEARLLPNQEVEDVLD 248
+ P V P G + I C + C+ + RL+P + +E+V
Sbjct: 237 YKAIPDIVSKYEISPESGKKPTILVGVVKCGTWVNTVADYCEFSIVRRLIPEENLEEVRH 296
Query: 249 LIDPILDEYT----IKYEYTEIWDGYELSEDEE--IVQIAKSAMEVVGLDEFGAMRSWTD 302
I +LD + ++YEY E + + D+E I + + EV G++ + + T
Sbjct: 297 SIIRVLDNISKSTGVRYEYDEFYAVNTMRCDDERLISALREKIREVRGVEARTVLSAGTF 356
Query: 303 AINFTYN-GTKTIVFGPGNLDISHTKHERIDVRDVVKASEFL 343
I FT N G K+I +GPG ++++H E I V+D++ + + L
Sbjct: 357 DIRFTINEGIKSINYGPGRIELAHANDEYIYVKDLLDSIKVL 398
>gb|AAK41276.1| Acetylornithine deacetylase (argE-2) [Sulfolobus solfataricus]
Length = 376
Score = 99.1 bits (243), Expect = 7e-20
Identities = 99/359 (27%), Positives = 158/359 (43%), Gaps = 51/359 (14%)
Query: 17 LKIPSPSGRE-DRIALYIMEFLHRLDYDVH-IESDGEIID---------------LVV-- 57
+K +P G E + I+ Y+ + + L + + IE E +D +V+
Sbjct: 14 IKTANPPGSEYESISFYLKDLFNDLGFQIQLIEIPEEYMDKYYIYSPSHKGNKRIIVIAK 73
Query: 58 -NPGAELFYEVHMDTIEPR----AEPF---VRGNIVYGTGASDIKGGIASILLMLEQLKK 109
+P L + H D + P PF V N YG G SD+KG I S+ L L +
Sbjct: 74 NSPNPILHFNFHYDVVPPGDGWLTNPFELKVVDNKAYGRGTSDMKGSIVSLYLALSRFN- 132
Query: 110 EEKDLNVGIVFVSDEEKGGRGSALFMERYR--PKMAIVLEPTDLEVHIAHAGNIEAYFEV 167
DL + IVFV DEE GG G+ E R P AI EP+ V+I H G + ++
Sbjct: 133 ---DLPIEIVFVPDEESGGIGTKYLTEEIRIAPSTAIFGEPSFPNVYIGHLGIVRGIIKI 189
Query: 168 DGKEAHGACPESGVNAIEQVFEMLQKLKELEPFKVKGKYFDPHIGIQELICENPYYLIPA 227
GK+AH + P+ G+NA ++ KL+E ++ ++G L N ++P
Sbjct: 190 FGKQAHASNPKDGINAFLLASKLALKLQEKLGNEI------VNLGGYTLNPTNNDGIVPG 243
Query: 228 LCKGRLEARLLP--NQEVEDVLDLIDPILDEYTIKY--EYTEIWDGYELSEDEEIVQIAK 283
+ P N+ E ++ID E I+Y E G + D + + K
Sbjct: 244 FFAFSYYRAIPPHDNRTPEFDKNVIDTTAREVGIEYNFEIKSFISGSVSNPDSSVAKAFK 303
Query: 284 ----SAMEVVGLDEFGAMRSWTDAINFTYNGTKTIVFGPGNLDISHTKHERIDVRDVVK 338
S + VV + +R DA+ Y +I FGPG+LD +H +E +++ ++ K
Sbjct: 304 FCITSTLNVVPKELISNIR--YDAV--FYKNLDSINFGPGSLDQAHVPNEYVELDNIEK 358
>sp|Q57899|Y457_METJA HYPOTHETICAL PROTEIN MJ0457 >gi|2129295|pir||A64357
succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) -
Methanococcus jannaschii >gi|1591159|gb|AAB98445.1|
(U67496) succinyl-diaminopimelate desuccinylase (dapE)
[Methanococcus jannaschii]
Length = 410
Score = 91.7 bits (224), Expect = 1e-17
Identities = 84/302 (27%), Positives = 137/302 (44%), Gaps = 40/302 (13%)
Query: 77 EPFVRGNIVYGTGASDIKGGIASILLMLEQLKKE--EKDLNVGIVFVSDEEKGGRGSALF 134
EP ++ +YG G+ D GI S LL+L+ + + E N+ ++FVSDEE G +
Sbjct: 105 EPVIKDGKIYGRGSEDNHKGIVSSLLLLKMIFENNIEPKYNLSLIFVSDEEDGSEYGLKY 164
Query: 135 M------ERYRPKMAIVLE----PTDLEVHIAHAGNIEAYFEVDGKEAHGACPESGVNAI 184
+ E ++ I++ PT V I G + F + GK+ HG+ PE+G+NA
Sbjct: 165 LLNNFEDEIFKKDDLIIVPDFGTPTGEFVEIGEKGILWIKFNIKGKQCHGSTPENGLNAD 224
Query: 185 EQVFEMLQKLKE--LEPFKVKGKYFDPHIG-----IQELICENPYYLIPALCKGRLEARL 237
F +L E F F P I + ENP IP + + R+
Sbjct: 225 IVAFNFANELYNGLYEKFDEINSIFLPEYSTFEPTILKNKVENP-NTIPGYVEVVFDCRI 283
Query: 238 LPNQEVEDVLDLIDPILDEYTIKYEYTEIWDG-------YEL---------SEDEEIVQI 281
LP ++E+VL+ I+ + + K +Y + +D YE+ E+ EI++
Sbjct: 284 LPTYKIEEVLEFINKFIKNFEFK-KYIKHYDNSIKAEITYEILKSENPNYTDENAEIIKE 342
Query: 282 AKSAME-VVGLD-EFGAMRSWTDAINFTYNGTKTIVFGPGNLDISHTKHERIDVRDVVKA 339
K A++ V+ D + M T A Y G V+G G + +H +E I + D+VK
Sbjct: 343 LKKAIKNVLNRDAKLCGMGGGTVAAFLRYKGYNVAVWGIGE-ETAHQPNEHIKIEDLVKM 401
Query: 340 SE 341
+E
Sbjct: 402 AE 403
>emb|CAA07459.1| (AJ007319) succinyl-diaminopimelate desuccinylase [Listeria
monocytogenes]
Length = 379
Score = 89.7 bits (219), Expect = 5e-17
Identities = 101/386 (26%), Positives = 180/386 (46%), Gaps = 54/386 (13%)
Query: 4 MKTERAKEILLQLLKIPSPSGREDRIALYIMEFL--HRLDYDVHIESDGEIIDLVVNPGA 61
M ++ +IL L+ I S +G E+++A Y+ + L H ++ + ++ D + LV G+
Sbjct: 1 MDQQKKIQILKDLVNIDSTNGHEEQVANYLQKLLAEHGIESE-KVQYDLDRASLVSEIGS 59
Query: 62 E----LFYEVHMDTIE---------PRAEPFVRGNIVYGTGASDIKGGIASILLMLEQLK 108
L + HMD ++ P E +YG GA+D+K G+A++++ + +L
Sbjct: 60 SNEKVLAFSGHMDVVDAGDVSKWKFPPFEATEHEGKLYGRGATDMKSGLAAMVIAMIELH 119
Query: 109 KEEKDLN--VGIVFVSDEEKGGRGSALFMER-YRPKM--AIVLEPTDLEVHIAHAGNIEA 163
+E++ LN + ++ EE G G+ ++ Y + I+ EP+ + AH G+I
Sbjct: 120 EEKQKLNGKIRLLATVGEEIGELGAEQLTQKGYADDLDGLIIGEPSGHRIVYAHKGSINY 179
Query: 164 YFEVDGKEAHGACPESGVNAIEQVFEMLQKLKELEPF--------KVKGKYFDPHIGIQE 215
+ GK AH + PE GVNAI+ +L E+E F ++ G + +
Sbjct: 180 TVKSTGKNAHSSMPEFGVNAID---NLLLFYNEVEKFVKSIDATNEILGDFIH---NVTV 233
Query: 216 LICENPYYLIPALCKGRLEARLLP---NQEVEDVL-DLIDPILDEYTIKYEYTEIWDGYE 271
+ N IP + + R +P N+ V+ VL +I+ + + + E +D
Sbjct: 234 IDGGNQVNSIPEKAQLQGNIRSIPEMDNETVKQVLVKIINKLNKQENVNLELIFDYDKQP 293
Query: 272 LSEDE--EIVQIAKSAMEVVGLDEFG--AMRSWTDAINFTYNGTK--TIVFGPGNLDISH 325
+ D+ ++V IAKS + +E + TDA FT + I+FGPGN + H
Sbjct: 294 VFSDKNSDLVHIAKSVASDIVKEEIPLLGISGTTDAAEFTKAKKEFPVIIFGPGN-ETPH 352
Query: 326 TKHERIDVR------DVVK--ASEFL 343
+E + + DV K A+EFL
Sbjct: 353 QVNENVSIGNYLEMVDVYKRIATEFL 378
>pir||B82973 probable peptidic bond hydrolase PA5390 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951714|gb|AAG08775.1|AE004951_9 (AE004951) probable
peptidic bond hydrolase [Pseudomonas aeruginosa]
Length = 384
Score = 89.3 bits (218), Expect = 6e-17
Identities = 94/381 (24%), Positives = 165/381 (42%), Gaps = 53/381 (13%)
Query: 9 AKEILLQLLKIPSPSGREDRIAL--YIMEFL--HRLDYDVHIESDGEIIDLVVNPGAE-- 62
+++IL L+ + S RE +AL Y+ ++L +D ++ ++DG +L G
Sbjct: 4 SRDILADLVAFDTVS-RESNLALIDYVRDYLAGFGVDSELFFDADGRKANLYATIGPSDR 62
Query: 63 --LFYEVHMDTIEPRAE-----PF---VRGNIVYGTGASDIKGGIASILLMLEQLKKEEK 112
+ H D + + PF R +YG G +D+KG +A +L +
Sbjct: 63 GGVCLSGHTDVVPADGQAWSVPPFRLSERDGRLYGRGTADMKGYLACVLAAVPAFLAAPL 122
Query: 113 DLNVGIVFVSDEEKGGRG-----SALFMERYRPKMAIVLEPTDLEVHIAHAGNIEAYFEV 167
L V + F DEE G G +AL ++P + I+ EPT+L+ + H G + EV
Sbjct: 123 RLPVHLAFSYDEEVGCLGVRSLLAALERRPHKPLLCIIGEPTELKPVLGHKGKLAMRCEV 182
Query: 168 DGKEAHGACPESGVNAIEQVFEMLQKLKEL-----EPFKVKGKYFDPHIGIQELICE--N 220
G H A GVNAIE ++ +L E+ P + ++ P+ +Q + +
Sbjct: 183 HGAACHSAYAPQGVNAIEYAARLIGRLGEIGARLAVPERHDRRFDPPYSTVQTGLIQGGR 242
Query: 221 PYYLIPALCKGRLEARLL----PNQEVEDVLDLIDPIL--------DEYTIKYEYTEIWD 268
++PA C+ E R L P Q E++ D + L I++ +
Sbjct: 243 ALNIVPAECRFDFEVRALPADDPRQVAEELRDYAESELLPRMRAVERSTDIRFTPLSAYP 302
Query: 269 GYELSEDEEIVQIAKSAMEVVGL----DEFGAMRSWTDAINFTYNGTKTIVFGPGNLDIS 324
G ++D + A E++GL +F + T+ F G ++ GPG++D
Sbjct: 303 GLLTADDSQ-------AAELIGLLSGSTDFSTVAFGTEGGLFHQAGIPAVICGPGSMDQG 355
Query: 325 HTKHERIDVRDVVKASEFLLA 345
H E + + ++A + LLA
Sbjct: 356 HKPDEFVSLAQ-LEACDALLA 375
>gb|AAK40507.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 346
Score = 88.9 bits (217), Expect = 8e-17
Identities = 81/347 (23%), Positives = 158/347 (45%), Gaps = 18/347 (5%)
Query: 7 ERAKEILLQLLKIPSPSGREDRIALYIMEFLHRLDYDVHIESDGEIIDLVVNPGAELFYE 66
++AKE+LL LL I +PS E + + L+ + I D ++ G ++
Sbjct: 10 QKAKELLLDLLSIYTPSKSEANATKFFEKISKDLNLKLEILPDSN--SFILGEG-DILLA 66
Query: 67 VHMDTIEPRAEPFVRGNIVYGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVFVSDEEK 126
H+DT+ EP + ++YG GA D KG + S+++ L EK + V + ++DEE
Sbjct: 67 SHVDTVYGYIEPKIENELIYGRGAVDAKGPLISMIIATWLL--NEKGIKVRVSGLADEES 124
Query: 127 GGRGS-ALFMERYRPKMAIVLEPTD-LEVHIAHAGNIEAYFEVDGKEAHGACPESGVNAI 184
G+ L + Y K IV EP++ ++ + + G+I+ +G H + ++ +
Sbjct: 125 TSIGAKELIAKNYNFKYIIVGEPSNATDIVVEYRGSIQLDIMCEGTPEHSSSAKNNL--- 181
Query: 185 EQVFEMLQKLKELEPFKVKGKYFDPHIGIQELICENPYYLIPALCKGRLEARLLPNQEVE 244
+ ++ +K+ +E +K Y P I + Y + PA L+ R N + E
Sbjct: 182 --IVDISKKI--IEVYKQPENYDKPSIVPTIIRAGESYNVTPAKLYLHLDIRYAINNKRE 237
Query: 245 DVLDLIDPILDEYTIKYEYTEIWDGYELSEDEEIVQIAKSAMEVVGLDEFGAMRSWTDAI 304
D++ I E +K + ++S + +V+ A+ + ++ T +
Sbjct: 238 DLIKEITDKFPECNLK--IVDETPPVKVSINNPVVKSLARALLKQNIKPRLVKKAGTSDM 295
Query: 305 NFTYNGTKTI-VFGPGNLDISHTKHERIDVRDV-VKASEFLLAVNDI 349
N T I +GPGN + HT E+I + ++ + ++LA+ ++
Sbjct: 296 NILQRITTNIATYGPGNSMLEHTTQEKISLDEIYIGVKTYMLAIEEL 342
>gb|AAC82366.1| (AF055904) acetylornithine deacetylase; ArgE [Myxococcus xanthus]
Length = 380
Score = 88.5 bits (216), Expect = 1e-16
Identities = 84/278 (30%), Positives = 127/278 (45%), Gaps = 29/278 (10%)
Query: 85 VYGTGASDIKGGIASIL---LMLEQLKKEEKDLNVGIVFVSDEEKGGRGSALFMERY--R 139
+Y GA D KG IA L L EQLK + +V +DEE G G+ +E R
Sbjct: 102 LYARGACDTKGFIACALHAALNAEQLKAP-----LMVVLTADEEVGLTGAKKLVEAGLGR 156
Query: 140 PKMAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESGVNAIEQVFEMLQKLKELEP 199
+ AIV EPT L A+ G A EV GKE H A P+SG +AI + LQ+L+ L
Sbjct: 157 ARHAIVGEPTRLIPVRANKGYCLAEVEVRGKEGHSAYPDSGASAIFRAGRFLQRLEHLAL 216
Query: 200 FKVK---GKYFDP---HIGIQELICENPYYLIPALCKGRLEARLLPNQEVEDVLDLIDPI 253
++ + F P + + + +IP C+ +E R +P Q E V L++ I
Sbjct: 217 TVLREDLDEGFQPPFTTVNVGVIQGGKAKNVIPGACRFVVEWRPIPGQPPERVSQLLETI 276
Query: 254 LDE-------YTIKYEYTEIWDGYELSEDEEIVQ-IAKSAMEVVGLDEFGAMRSWTDAIN 305
E + + G D E+V+ +A+++ FG T+A
Sbjct: 277 RQELVRDEPAFEAQIRVVRTDRGVNTRADAEVVRFLAEASGNAPETVSFG-----TEAPQ 331
Query: 306 FTYNGTKTIVFGPGNLDISHTKHERIDVRDVVKASEFL 343
T G + +VFGPG++ ++H E + V D+V+ L
Sbjct: 332 MTELGAEAVVFGPGDIRVAHQTGEYVPVEDLVRCEAVL 369
>pir||H69588 acetylornithine deacetylase argE - Bacillus subtilis
>gi|2415403|gb|AAB72071.1| (AF015775) acetylornitine
deacetylase [Bacillus subtilis]
>gi|2634363|emb|CAB13862.1| (Z99114) acetylornitine
deacetylase [Bacillus subtilis]
Length = 436
Score = 81.5 bits (198), Expect = 1e-14
Identities = 76/285 (26%), Positives = 135/285 (46%), Gaps = 27/285 (9%)
Query: 85 VYGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVFVS--DEEKGGRGS-ALFMERYRPK 141
+YG G++D+KGG ++L LE L + L ++F S DEE GG G+ + M YR
Sbjct: 129 IYGRGSTDMKGGNTALLFALEALHACDVKLKGDVLFQSVVDEECGGAGTLSAIMRGYRAD 188
Query: 142 MAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESGVNAIEQVFEMLQKLKELEPFK 201
A++ EPT++++ I G++ V G AHG GV+AIE+ ++ ++ELE +
Sbjct: 189 GALIPEPTNMKLFIKQQGSMWFRITVKGLSAHGGTRYEGVSAIEKSMHVITAIQELEKVR 248
Query: 202 VKGKYFDP-----HIGIQELICENPYYLIPALCKGR--LEAR--LLPNQEVEDV------ 246
+ DP I + I P+ R +E R + P+++ E V
Sbjct: 249 -NARISDPLYDNIPIPVPVNIGTISGGAWPSSVADRVVIEGRCGIAPHEKPEAVKLELEN 307
Query: 247 ----LDLIDPILDEYTIKYE-YTEIWDGYELSEDEEIVQIAKSAMEVVGLDE--FGAMRS 299
L+ D + ++ E + W +L +D ++ + +SA + + E A
Sbjct: 308 WLKDLEYHDEWFKRHPVQVEWFGAQWLPNDLPDDHPLISVLQSAYQKMKQTEPIIEASPW 367
Query: 300 WTD-AINFTYNGTKTIVFGPGNLDISHTKHERIDVRDVVKASEFL 343
TD + + T IVFGPG +H +E I+V ++++++ +
Sbjct: 368 GTDGGLLYHAGDTPVIVFGPGETKTAHQANEYIEVEAMIESAKII 412
>gb|AAB81157.1| (AF006665) YokP [Bacillus subtilis]
Length = 434
Score = 81.5 bits (198), Expect = 1e-14
Identities = 76/285 (26%), Positives = 135/285 (46%), Gaps = 27/285 (9%)
Query: 85 VYGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVFVS--DEEKGGRGS-ALFMERYRPK 141
+YG G++D+KGG ++L LE L + L ++F S DEE GG G+ + M YR
Sbjct: 127 IYGRGSTDMKGGNTALLFALEALHACDVKLKGDVLFQSVVDEECGGAGTLSAIMRGYRAD 186
Query: 142 MAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESGVNAIEQVFEMLQKLKELEPFK 201
A++ EPT++++ I G++ V G AHG GV+AIE+ ++ ++ELE +
Sbjct: 187 GALIPEPTNMKLFIKQQGSMWFRITVKGLSAHGGTRYEGVSAIEKSMHVITAIQELEKVR 246
Query: 202 VKGKYFDP-----HIGIQELICENPYYLIPALCKGR--LEAR--LLPNQEVEDV------ 246
+ DP I + I P+ R +E R + P+++ E V
Sbjct: 247 -NARISDPLYDNIPIPVPVNIGTISGGAWPSSVADRVVIEGRCGIAPHEKPEAVKLELEN 305
Query: 247 ----LDLIDPILDEYTIKYE-YTEIWDGYELSEDEEIVQIAKSAMEVVGLDE--FGAMRS 299
L+ D + ++ E + W +L +D ++ + +SA + + E A
Sbjct: 306 WLKDLEYHDEWFKRHPVQVEWFGAQWLPNDLPDDHPLISVLQSAYQKMKQTEPIIEASPW 365
Query: 300 WTD-AINFTYNGTKTIVFGPGNLDISHTKHERIDVRDVVKASEFL 343
TD + + T IVFGPG +H +E I+V ++++++ +
Sbjct: 366 GTDGGLLYHAGDTPVIVFGPGETKTAHQANEYIEVEAMIESAKII 410
>pir||G75160 acetyl ornithine deacetylase PAB0294 - Pyrococcus abyssi (strain
Orsay) >gi|5457876|emb|CAB49366.1| (AJ248284) acetyl
ornithine deacetylase [Pyrococcus abyssi]
Length = 337
Score = 81.1 bits (197), Expect = 2e-14
Identities = 82/344 (23%), Positives = 150/344 (42%), Gaps = 37/344 (10%)
Query: 5 KTERAKEILLQLLKIPSPSGREDRIALYIMEFLHRLDYDVHIESDGEIIDLVVNPGAELF 64
K E+ K L +L++I SP+G+E+ A +I E L +I+ G +I + G +
Sbjct: 5 KDEKIK-FLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEGPLIL 63
Query: 65 YEVHMDTIEPRAEPFVRGNIVYGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVFVSDE 124
H+DT+ + G+I++G G+ D KG ++++L + E + NV + DE
Sbjct: 64 LAGHVDTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFAM-----VESNANVIFAGLVDE 118
Query: 125 EKGGRGSALFMERYRPKMAIVLEPTDLE-VHIAHAGNIEAYFEVDGKEAHGACPESGVNA 183
E +G A ++ RP+ IV EP+ + V I + G++ F ++ HG+ G A
Sbjct: 119 EGFSKG-ARALDVPRPEYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFHGSI---GGGA 174
Query: 184 IEQVFEMLQKLKELEPFKVKGKYFDPHIGIQELICENPYYLIPALCKGRL--EARLLPNQ 241
E++ E + G + D G+ I Y G + R P
Sbjct: 175 AEKLIERW--------LSISGNFEDGFNGLSGRIVRFVAYERDFEFYGEMIVNLRTPPGY 226
Query: 242 EVEDVLDLIDPILDEYTIKYEYTEIWDGYELSEDEEIVQIAKSAMEVVGLDEFGAMRSWT 301
E D+ID + YE++ +V+ ++ +G+ +S T
Sbjct: 227 EPPRDWDIIDFV--------------PAYEVNRRSPLVRTFVRSIRELGMKPKLKKKSGT 272
Query: 302 DAINFTYN--GTKTIVFGPGNLDISHTKHERIDVRDVVKASEFL 343
+N G + +GPG+ + HT +ERI + + +++ + L
Sbjct: 273 ADMNILAPRFGVDAVAYGPGDSRLDHTPYERISLMEYLQSIDVL 316
>sp|P23908|ARGE_ECOLI ACETYLORNITHINE DEACETYLASE (ACETYLORNITHINASE) (AO)
(N-ACETYLORNITHINASE) (NAO) >gi|95637|pir||B42377
acetylornithine deacetylase (EC 3.5.1.16) - Escherichia
coli >gi|40955|emb|CAA44625.1| (X62807) acetylornithine
deacetylase subunit a2 [Escherichia coli]
>gi|40957|emb|CAA39076.1| (X55417) N-acetylornithinase
[Escherichia coli] >gi|396304|gb|AAC43063.1| (U00006)
acetylornithine deacetylase [Escherichia coli]
>gi|1790395|gb|AAC76939.1| (AE000470) acetylornithine
deacetylase [Escherichia coli K12]
Length = 383
Score = 80.8 bits (196), Expect = 2e-14
Identities = 67/281 (23%), Positives = 126/281 (43%), Gaps = 28/281 (9%)
Query: 85 VYGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVFVSDEEKGGRGSALFMER--YRPKM 142
+YG G +D+KG A IL L + + + I+ +DEE G+ F E RP
Sbjct: 105 LYGLGTADMKGFFAFILDALRDVDVTKLKKPLYILATADEETSMAGARYFAETTALRPDC 164
Query: 143 AIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESGVNAIEQVFEMLQKLKELEPFKV 202
AI+ EPT L+ AH G+I + G+ H + P GVNAIE + + + + +L
Sbjct: 165 AIIGEPTSLQPVRAHKGHISNAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQLRDNLK 224
Query: 203 KGKYFD------PHIGIQELICENPYYLIPALCKGRLEARLLPNQEVEDVLDLID----P 252
+ +++ P + + + + I A C+ ++ R LP + ++ L++ P
Sbjct: 225 ERYHYEAFTVPYPTLNLGHIHGGDASNRICACCELHMDIRPLPGMTLNELNGLLNDALAP 284
Query: 253 ILDEYTIKYEYTEIW---DGYELSEDEEIVQIAKSAM----EVVGLDEFGAMRSWTDAIN 305
+ + + + E+ GYE + ++V++ + + EVV ++
Sbjct: 285 VSERWPGRLTVDELHPPIPGYECPPNHQLVEVVEKLLGAKTEVV---------NYCTEAP 335
Query: 306 FTYNGTKTIVFGPGNLDISHTKHERIDVRDVVKASEFLLAV 346
F T+V GPG+++ +H E ++ R + E + V
Sbjct: 336 FIQTLCPTLVLGPGSINQAHQPDEYLETRFIKPTRELITQV 376
>pir||H70608 probable succinyl-diaminopimelate desuccinylase - Mycobacterium
tuberculosis (strain H37RV) >gi|1929076|emb|CAB07825.1|
(Z93777) dapE [Mycobacterium tuberculosis]
Length = 354
Score = 79.6 bits (193), Expect = 5e-14
Identities = 86/345 (24%), Positives = 142/345 (40%), Gaps = 18/345 (5%)
Query: 11 EILLQLLKIPSPSGREDRIALYIMEFLHRLDYDVHIESDGEII--DLVVNPGAELFYEVH 68
E+ L+ IPS S +E RIA + L I +G + +N + + H
Sbjct: 10 ELTAALIDIPSESRKEARIADEVEAALRAQASGFEIIRNGNAVLARTKLNRSSRVLLAGH 69
Query: 69 MDTIEPRAE-PFVRGNI-VYGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVFVSDEEK 126
+DT+ P R N ++G GA+D+K G A L + L + DL +VF EE
Sbjct: 70 LDTVPVAGNLPSRRENDQLHGCGAADMKSGDAVFLHLAATLAEPTHDLT--LVFYDCEEI 127
Query: 127 GGRGSALF-MERYRPK-----MAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESG 180
+ L ++R P +AI+ EPT + G + V G AH A G
Sbjct: 128 DSAANGLGRIQRELPDWLSADVAILGEPTAGCIEAGCQGTLRVVLSVTGTRAHSARSWLG 187
Query: 181 VNAIEQVFEMLQKLK--ELEPFKVKGKYFDPHIGIQELICENPYYLIPALCKGRLEARLL 238
NAI ++ +L +L + G + + + +IP + R
Sbjct: 188 DNAIHKLGAVLDRLAVYRARSVDIDGCTYREGLSAVRVAGGVAGNVIPDAASVTINYRFA 247
Query: 239 PNQEVEDVLDLIDPILDEYTIKYEYTEIWDGYELSEDEEIVQIAKSAMEVVGLDEFGAMR 298
P++ V L + + D ++ E T+ G E AK+ +E G + A
Sbjct: 248 PDRSVAAALQHVHDVFDGLDVQIEQTDAAAGALPGLSEPA---AKALVEAAG-GQVRAKY 303
Query: 299 SWTDAINFTYNGTKTIVFGPGNLDISHTKHERIDVRDVVKASEFL 343
WTD F G + +GPG+ +++H + ER+ V ++ A + L
Sbjct: 304 GWTDVSRFAALGIPAVNYGPGDPNLAHCRDERVPVGNITAAVDLL 348
>sp|Q46805|YGEY_ECOLI HYPOTHETICAL 44.8 KD PROTEIN IN KDUI-LYSS INTERGENIC REGION
>gi|7466465|pir||H65070 hypothetical protein b2872 -
Escherichia coli (strain K-12) >gi|887822|gb|AAA83053.1|
(U28375) possible frameshift at end to join to next ORF?
[Escherichia coli] >gi|1789236|gb|AAC75910.1| (AE000370)
putative deacetylase [Escherichia coli K12]
Length = 403
Score = 77.6 bits (188), Expect = 2e-13
Identities = 86/361 (23%), Positives = 155/361 (42%), Gaps = 49/361 (13%)
Query: 13 LLQLLKIPSPSGREDRIALYIMEFLHRLDYD-VHIESDGEIIDLVVNPGAELFYEVHMDT 71
L ++ IPS S E R+ I E + ++ +D V I+ G ++ + + + + H+DT
Sbjct: 25 LRDMVAIPSESCDEKRVVHRIKEEMEKVGFDKVEIDPMGNVLGYIGHGPRLVAMDAHIDT 84
Query: 72 I----------EPRAEPFVRGNIVYGTGASDIKGGIASILL---MLEQLKKEEKDLNVGI 118
+ +P E ++ G G SD +GG+AS++ +++ L E++ +
Sbjct: 85 VGIGNIKNWDFDPY-EGMETDELIGGRGTSDQEGGMASMVYAGKIIKDLGLEDEYTLLVT 143
Query: 119 VFVSDEEKGGRGSALFMER--YRPKMAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGAC 176
V +E+ G +E+ RP+ + EPTD +V+ G +E +V G HG+
Sbjct: 144 GTVQEEDCDGLCWQYIIEQSGIRPEFVVSTEPTDCQVYRGQRGRMEIRIDVQGVSCHGSA 203
Query: 177 PESGVNAIEQVFEMLQKLKELEPFKVKGKYFDPHIGIQELICENPYYLIPA------LCK 230
PE G NAI ++ +L +L+EL + +D +G L ++ P+ C
Sbjct: 204 PERGDNAIFKMGPILGELQELS----QRLGYDEFLGKGTLTVSEIFFTSPSRCAVADSCA 259
Query: 231 GRLEARLLPNQEVEDVLDLIDPI-----LDEYTIKYEYTE-IWDG-----------YELS 273
++ RL + E LD I + + Y Y W G +++
Sbjct: 260 VSIDRRLTWGETWEGALDEIRALPAVQKANAVVSMYNYDRPSWTGLVYPTECYFPTWKVE 319
Query: 274 EDEEIVQIAKSAMEVVGLDEFGAMRSWTDAIN----FTYNGTKTIVFGPGNLDISHTKHE 329
ED V+ +A E + + + WT + N +G I FGPG +H +E
Sbjct: 320 EDHFTVKALVNAYEGL-FGKAPVVDKWTFSTNGVSIMGRHGIPVIGFGPGKEPEAHAPNE 378
Query: 330 R 330
+
Sbjct: 379 K 379
>emb|CAC01340.1| (AL390975) succinyl-diaminopimelate desuccinylase [Streptomyces
coelicolor A3(2)]
Length = 359
Score = 77.6 bits (188), Expect = 2e-13
Identities = 90/356 (25%), Positives = 146/356 (40%), Gaps = 35/356 (9%)
Query: 9 AKEILLQLLKIPSPSGREDRIALYIMEFLHRLDYDVHIESDGEIIDLVVNPGAELFYEV- 67
A E+ +L+ PS SG E +A I L L + + +E G +LV G V
Sbjct: 12 AAELTARLVDFPSESGTEKPLADAIESALRTLPH-LSVERYGN--NLVARTGLGRAERVI 68
Query: 68 ---HMDTIEPRAEPFVR---GNIVYGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVFV 121
H+DT+ R +++G G D+K G+A L + + +DL VF
Sbjct: 69 LAGHIDTVPIAGNVPSRLDEDGVLWGCGTCDMKAGVAVQLRIAATVPAPNRDLT--FVFY 126
Query: 122 SDEEKGGRGSAL------FMERYRPKMAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGA 175
+EE + L E A++LEP+D +V G + + G+ AH A
Sbjct: 127 DNEEVAAELNGLKHVAEAHPEWLEGDFAVLLEPSDGQVEGGCQGTLRVLLKTAGERAHSA 186
Query: 176 CPESGVNAIEQVFEMLQKLKELEPFK--VKGKYFDPH---IGIQELICENPYYLIPALCK 230
G NAI +L +L EP + G + +GI + N +IP C
Sbjct: 187 RSWMGSNAIHAAAPILARLAAYEPRYPVIDGLEYREGLNAVGITGGVAGN---VIPDECV 243
Query: 231 GRLEARLLPNQEVEDVLDLIDPILDEYTIKYEYTEIWDGYELSEDEEIVQIAKSAMEVVG 290
+ R P++ E+ L + + D + + G L A + +E VG
Sbjct: 244 VTVNFRYAPDRSPEEALAHVREVFDGCGVTDFVVDDHSGAALPGLSH--PAAAAFIEAVG 301
Query: 291 ---LDEFGAMRSWTDAINFTYNGTKTIVFGPGNLDISHTKHERIDVRDVVKASEFL 343
++G WTD F+ G + +GPGN ++H + ER++V ++ E L
Sbjct: 302 GTPQPKYG----WTDVSRFSALGVPAVNYGPGNPHLAHKRDERVEVAKILAGEERL 353
>sp|Q59284|DAPE_CORGL SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE (SDAP)
>gi|2127426|pir||S60063 succinyl-diaminopimelate
desuccinylase (EC 3.5.1.18) - Corynebacterium glutamicum
>gi|939862|emb|CAA57141.1| (X81379)
succinyl-diaminopimelate desuccinylase [Corynebacterium
glutamicum]
Length = 369
Score = 75.7 bits (183), Expect = 8e-13
Identities = 83/352 (23%), Positives = 146/352 (40%), Gaps = 32/352 (9%)
Query: 15 QLLKIPSPSGREDRIALYIMEFLHRLDYD-VHIESDGEIIDLVVNPG--AELFYEVHMDT 71
+L+ IPSPSG+E +IA I + L L+ V + + N G + + H+DT
Sbjct: 21 RLVDIPSPSGQEKQIADEIEDALRNLNLPGVEVFRFNNNVLARTNRGLASRVMLAGHIDT 80
Query: 72 IEPRAEPF---VRGNIVYGTGASDIKGGIA------SILLMLEQLKKEEKDLNVGIVFVS 122
+ P A+ V I+YG G D+K G+A + L +LK + + V+
Sbjct: 81 V-PIADNLPSRVEDGIMYGCGTVDMKSGLAVYLHTFATLATSTELKHDLTLIAYECEEVA 139
Query: 123 DEEKG-GRGSALFMERYRPKMAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESGV 181
D G G E +A++ EPT + GN+ G AH A G
Sbjct: 140 DHLNGLGHIRDEHPEWLAADLALLGEPTGGWIEAGCQGNLRIKVTAHGVRAHSARSWLGD 199
Query: 182 NAIEQVFEMLQKLKELEPFKVKGKYFDPHIGIQELICENPYY--LIPALCKGRLEARLLP 239
NA+ ++ ++ K+ + +V G+ + CE+ +IP L L R P
Sbjct: 200 NAMHKLSPIISKVAAYKAAEVNIDGLTYREGLNIVFCESGVANNVIPDLAWMNLNFRFAP 259
Query: 240 NQEVEDVLDLIDPILDEYTIKYEYTEIWDGYELSEDEEI--------VQIAKSAMEVVGL 291
N+++ + + E+ ++ + DG E + ++ Q+ ++ VG
Sbjct: 260 NRDLNEAI--------EHVVETLELDGQDGIEWAVEDGAGGALPGLGQQVTSGLIDAVGR 311
Query: 292 DEFGAMRSWTDAINFTYNGTKTIVFGPGNLDISHTKHERIDVRDVVKASEFL 343
++ A WTD F+ G + FG G+ +H + E+ V + + L
Sbjct: 312 EKIRAKFGWTDVSRFSAMGIPALNFGAGDPSFAHKRDEQCPVEQITDVAAIL 363
>prf||2106301A succinyl diaminopimelate desuccinylase [Corynebacterium glutamicum]
Length = 369
Score = 75.7 bits (183), Expect = 8e-13
Identities = 83/352 (23%), Positives = 146/352 (40%), Gaps = 32/352 (9%)
Query: 15 QLLKIPSPSGREDRIALYIMEFLHRLDYD-VHIESDGEIIDLVVNPG--AELFYEVHMDT 71
+L+ IPSPSG+E +IA I + L L+ V + + N G + + H+DT
Sbjct: 21 RLVDIPSPSGQEKQIADEIEDALRNLNLPGVEVFRFNNNVLARTNRGLASRVMLAGHIDT 80
Query: 72 IEPRAEPF---VRGNIVYGTGASDIKGGIA------SILLMLEQLKKEEKDLNVGIVFVS 122
+ P A+ V I+YG G D+K G+A + L +LK + + V+
Sbjct: 81 V-PIADNLPSRVEDGIMYGCGTVDMKSGLAVYLHTFATLATSTELKHDLTLIAYECEEVA 139
Query: 123 DEEKG-GRGSALFMERYRPKMAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESGV 181
D G G E +A++ EPT + GN+ G AH A G
Sbjct: 140 DHLNGLGHIRDEHPEWLAADLALLGEPTGGWIEAGCQGNLRIKVTAHGVRAHSARSWLGD 199
Query: 182 NAIEQVFEMLQKLKELEPFKVKGKYFDPHIGIQELICENPYY--LIPALCKGRLEARLLP 239
NA+ ++ ++ K+ + +V G+ + CE+ +IP L L R P
Sbjct: 200 NAMHKLSPIISKVAAYKAAEVNIDGLTYREGLNIVFCESGVANNVIPDLAWMNLNFRFAP 259
Query: 240 NQEVEDVLDLIDPILDEYTIKYEYTEIWDGYELSEDEEI--------VQIAKSAMEVVGL 291
N+++ + + E+ ++ + DG E + ++ Q+ ++ VG
Sbjct: 260 NRDLNEAI--------EHVVETLELDGQDGIEWAVEDGAGGALPGLGQQVTSGLIDAVGR 311
Query: 292 DEFGAMRSWTDAINFTYNGTKTIVFGPGNLDISHTKHERIDVRDVVKASEFL 343
++ A WTD F+ G + FG G+ +H + E+ V + + L
Sbjct: 312 EKIRAKFGWTDVSRFSAMGIPALNFGAGDPSFAHKRDEQCPVEQITDVAAIL 363
>pir||E81307 succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) Cj1048c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968484|emb|CAB73304.1| (AL139077)
succinyl-diaminopimelate desuccinylase [Campylobacter
jejuni]
Length = 365
Score = 75.7 bits (183), Expect = 8e-13
Identities = 89/376 (23%), Positives = 158/376 (41%), Gaps = 46/376 (12%)
Query: 9 AKEILLQLLKIPSPSGREDRIALYIMEFLHRLDYDVH-IESDGEIIDLVV-----NPGAE 62
AKE L++LLK S + +D +I L D++ IE +G I +L++ + G
Sbjct: 3 AKEFLIELLKFKSVTPNDDGALNFIAMELS--DFEAFFIEKEG-IKNLLLTKKFKDEGEH 59
Query: 63 LFYEVHMDTIEPRAE--------PFVRGNIVYGTGASDIKGGIASILLMLEQLKKEEKDL 114
L + H+D + P E P + +Y GA D+K G+A+ + + + K
Sbjct: 60 LAFGGHVDVV-PAGEGWSNNAFAPVEKEGFIYARGAQDMKSGVAAFVDAAKNA--DFKGA 116
Query: 115 NVGIVFVSDEEK----GGRGSALFMER--YRPKMAIVLEPTDLE-----VHIAHAGNIEA 163
+ ++ SDEE G + +M+ P A+V EPT ++ + I G+I
Sbjct: 117 RLSLILTSDEEGEAIYGTKAVLEWMQERDMLPDYAVVAEPTCVKKIGDSIKIGRRGSING 176
Query: 164 YFEVDGKEAHGACPESGVNAIEQVFEMLQKLKELEPFKVKGKYFDPHIGIQEL-----IC 218
+ GK+ H A PE +N + +L+ L + ++ I I ++ +C
Sbjct: 177 KLLIRGKQGHVAYPEKCINPVHDFAPVLKLLAGFDLDPGSAEFSPSKIVITDIRGGMGVC 236
Query: 219 ENPYYLIPALCKGRLEARLLPNQEVEDVLDLIDPILDEYTIKYEYTEIWDGYELSEDEEI 278
+ P K R P+ +EDV ++ I + E + + + + D +I
Sbjct: 237 N----VTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELELKQSSEAFLTNIDNKI 292
Query: 279 VQIAKSAMEVV--GLDEFGAMRSWTDAINFTYNGTKTIVFGPGNLDISHTKHERIDVRDV 336
VQ +++ + + E +DA F G K + FG N D H ER+ + +
Sbjct: 293 VQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGVCN-DRIHAIDERVSIEEF 351
Query: 337 VKASEFLLAVNDIVGN 352
K L D++ N
Sbjct: 352 EK---LCLVFKDLIEN 364
>emb|CAB95013.1| (AJ252020) acetylornithinase (n2-acetyl-l-ornithine amidohydrolase)
[Moritella sp. 2674]
Length = 381
Score = 75.3 bits (182), Expect = 1e-12
Identities = 61/264 (23%), Positives = 118/264 (44%), Gaps = 22/264 (8%)
Query: 86 YGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVFVSDEEK--GGRGSALFMERYRPKMA 143
YG G D+KG A +L + + + D + I+ +DEE G + + +RP A
Sbjct: 104 YGLGTIDMKGFFAFVLEACKNIDLTKLDKPLRILATADEETTMAGARAIAAAKSFRPDYA 163
Query: 144 IVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESGVNAIEQVFEMLQKLKELEPFKVK 203
++ EPT + H G++ + G+ H + P +G+NAIE + ++ +L +L+ K+K
Sbjct: 164 VIGEPTSMVPVFMHKGHMSEAIRITGRSGHSSDPANGINAIEIMHQVTGQLLQLQR-KLK 222
Query: 204 GKYFDPHIGIQELICENPYY-------LIPALCKGRLEARLLPNQEVEDVLDLID----P 252
+Y H I + + I C+ ++ R +P +++ L++ P
Sbjct: 223 EQYACDHFVIPQPTLNFGHVHGGDSPNRICGSCELHIDMRPIPGVNPDELFMLLNQALLP 282
Query: 253 ILDEY---TIKYEYTEIWDGYELSEDEEIVQIAKSAMEVVGLDEFGAMRSWTDAINFTYN 309
I+ ++ Y E Y D ++++A+ E ++ F +
Sbjct: 283 IMKQWPGAVDVYHLHEPIPAYACDTDSALIKLAEKL-----TGETVIPVNYCTEAPFIHT 337
Query: 310 GTKTIVFGPGNLDISHTKHERIDV 333
G TIV GPG+++ +H E +D+
Sbjct: 338 GCDTIVMGPGSINQAHQPDEYLDL 361
>emb|CAB95019.1| (AJ252021) acetylornithinase (n2-acetyl-l-ornithine amidohydrolase)
[Moritella sp. 2693]
Length = 382
Score = 74.1 bits (179), Expect = 2e-12
Identities = 83/367 (22%), Positives = 157/367 (42%), Gaps = 42/367 (11%)
Query: 4 MKTERAKEILLQLLKIPSPSGREDRIAL-------YIMEFLHRLDYDVHIESDGEI---I 53
M+ + E+ L+ IPS S E + + + + L + ++I S E
Sbjct: 1 MQLPQFSELYKSLILIPSISSLEKELDISNKPVIDLLSGWFSELGFSINITSVPETNGKF 60
Query: 54 DLVVNPG---AELFYEVHMDTIEP-----RAEPFV---RGNIVYGTGASDIKGGIASILL 102
+LV G L H DT+ +PF + + YG G D+KG A +L
Sbjct: 61 NLVATYGQGDGGLLLAGHTDTVPFDDDLWTKDPFKLTEKDDKWYGLGTIDMKGFFAFVLE 120
Query: 103 MLEQLKKEEKDLNVGIVFVSDEEK--GGRGSALFMERYRPKMAIVLEPTDLEVHIAHAGN 160
+ + + D + I+ +DEE G + + +RP A++ EPT + H G+
Sbjct: 121 ACKNIDLTKLDKPLRILATADEETTMAGARAIAAAQSFRPDYAVIGEPTGMVPVFMHKGH 180
Query: 161 IEAYFEVDGKEAHGACPESGVNAIEQVFEMLQKLKELEPFKVKGKYFDPHIGIQELICEN 220
+ + G+ H + P +G+NAIE + ++ +L +L+ K+K +Y H I +
Sbjct: 181 MSEAIRITGRSGHSSDPANGINAIEIMHQVTGQLLQLQR-KLKEQYACDHFVIPQPTLNF 239
Query: 221 PYY-------LIPALCKGRLEARLLPNQEVEDVLDLID----PILDEY---TIKYEYTEI 266
+ I C+ ++ R +P +++ L++ PI+ ++ Y E
Sbjct: 240 GHVHGGDSPNRICGSCELHIDMRPIPGVNPDELFMLLNQALLPIIKQWPGAVDVYHLHEP 299
Query: 267 WDGYELSEDEEIVQIAKSAMEVVGLDEFGAMRSWTDAINFTYNGTKTIVFGPGNLDISHT 326
Y + D ++++A E + + + T+A G TIV GPG+++ +H
Sbjct: 300 IPAYACNTDSALIKLA----EKLTGEAVIPVNYCTEAPFIQQLGCDTIVMGPGSINQAHQ 355
Query: 327 KHERIDV 333
E +D+
Sbjct: 356 PDEYLDL 362
>pir||C82049 acetylornithine deacetylase VC2645 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657237|gb|AAF95786.1|
(AE004331) acetylornithine deacetylase [Vibrio cholerae]
Length = 378
Score = 74.1 bits (179), Expect = 2e-12
Identities = 87/355 (24%), Positives = 143/355 (39%), Gaps = 46/355 (12%)
Query: 11 EILLQLLKIPSPSGRED----RIALYIMEFLHRLDYDVHIE----SDGEIIDLVVNPGAE 62
E L+ I S R D ++ + ++L L + + IE + +I + +
Sbjct: 11 EGLISTSSISSTDARWDEGNEQVIAKLADWLSALGFSIQIEQVAPNKQNLIAKLGSGEGG 70
Query: 63 LFYEVHMDTIEPRAEPFVRG-------------NIVYGTGASDIKGGIASILLMLEQLKK 109
L H DT+ PF G N YG G +D+KG A I ++ +
Sbjct: 71 LLLAGHSDTV-----PFDEGRWNYNPHALTQVNNRFYGLGTADMKGFFAFIYEAVKNVDW 125
Query: 110 EEKDLNVGIVFVSDEEKGGRGSALFMER--YRPKMAIVLEPTDLEVHIAHAGNIEAYFEV 167
++ + ++ DEE G+ F E ++P I+ EPT L AH G++ V
Sbjct: 126 SKQTKPLYVLATCDEETTMLGARHFTENAPFKPDYCIIGEPTSLVPIRAHKGHVANAIRV 185
Query: 168 DGKEAHGACPESGVNAIEQVFEMLQKLKELEPFKVKGKYF------DPHIGIQELICENP 221
GK H + P GVNAIE + E+L L +L +K + P + + + +
Sbjct: 186 TGKSGHSSNPALGVNAIEIMHEVLFALMQLRDRLIKEYHHPGFEIPTPTLNLGHIHGGDS 245
Query: 222 YYLIPALCKGRLEARLLPNQEVEDVLDLIDPILDEYTIKY----EYTEIWD---GYELSE 274
I C+ + R LP ++ + +L+ L E K+ E + D GYE +
Sbjct: 246 PNRICGCCELHYDVRPLPGISLDGLDNLMHDALREVQQKWPGRIELVPLHDPIPGYECAH 305
Query: 275 DEEIVQIAKSAMEVVGLDEFGAMRSWTDAINFTYNGTKTIVFGPGNLDISHTKHE 329
D + E E + T+A F T+V GPG++D +H E
Sbjct: 306 DHPFIHGISEICE----QEAQTVNYCTEA-PFLQQVCPTLVLGPGSIDQAHQPDE 355
>pir||T41596 probable acetylornithine deacetylase - fission yeast
(Schizosaccharomyces pombe) >gi|3702638|emb|CAA21230.1|
(AL031825) putative acetylornithine deacetylase
[Schizosaccharomyces pombe]
Length = 400
Score = 72.6 bits (175), Expect = 7e-12
Identities = 73/332 (21%), Positives = 144/332 (42%), Gaps = 36/332 (10%)
Query: 16 LLKIPSPSGREDRIALYIMEFLHRLDYDVHIES--------DGEIIDLVVNPGAELFYEV 67
L++I S G E ++ ++ +L V ++ D L ++
Sbjct: 68 LVEIESLGGNEVNVSDFLKSYLESKGLTVELQRVSSNPTVRDNVYAYLGSQRNTKVVLTS 127
Query: 68 HMDTIEPRAEPFVRGNIVYGTGASDIKGGIASILLMLEQLKKEEK--DLNVGIVFVSDEE 125
H+DT+ P ++ G+ ++G G+ D K +A+ + + +L E K + ++ ++FV EE
Sbjct: 128 HIDTVNPFLPYYIEGDKIHGRGSCDAKSSVAAQIFAMLELMSEGKVQEGDLSLLFVVGEE 187
Query: 126 KGGRGSALFMERYRP--KMAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESGVNA 183
G G + ++AI EPT+ ++ + H GN GK H P+ G +A
Sbjct: 188 IDGIGMKTVANKLNADWEVAIFGEPTENKLGVGHKGNFRFDVYAHGKACHSGYPQEGFSA 247
Query: 184 IEQVFEMLQKLKELEPFKVKGKYFDPH-IGIQELICENPYYLIPALCKGRLEARLLPNQE 242
IE F + Q +K ++ K K P I I + ++ A K + R+ ++
Sbjct: 248 IE--FLLRQCVKLMDTDLPKSKLLGPSTINIGTIEGGAAANILAAEAKAEVFIRVA--ED 303
Query: 243 VEDVLDLIDPILDEYTIKYEYTEIWDGYELSEDEEIVQIAKSA---MEVVGLDEFGAMRS 299
+E + D+ + + D E++EI +++Q + ++ G+D +
Sbjct: 304 IETIRDIAEDLFDT-----EHSEI----------KVIQYSPPQYLDYDIPGMDTV-VLAY 347
Query: 300 WTDAINFTYNGTKTIVFGPGNLDISHTKHERI 331
TD + K +FGPG++ +H +E +
Sbjct: 348 ATDIPYLSDRKMKIYLFGPGSIREAHGPNEYV 379
>dbj|BAB06397.1| (AP001516) acetylornithine deacetylase [Bacillus halodurans]
Length = 427
Score = 71.8 bits (173), Expect = 1e-11
Identities = 95/402 (23%), Positives = 170/402 (41%), Gaps = 65/402 (16%)
Query: 7 ERAKEILLQLLKI------PSPSGREDRIAL-YIMEFLHRLDYDVHI----ESDGEIIDL 55
++ KE LL L++ PSP R A YI + +L +V + +D ++ +
Sbjct: 15 DKNKEELLALVQTLVAYPTPSPPARNTADAQQYIRTYCEKLGCNVDMWDVYPNDPNVVAV 74
Query: 56 VVNPGAELFYEV----HMDTIE---------PRAEPFVRGNIVYGTGASDIKGGIASILL 102
+ +E + + H+D P E V ++ G G +D+KGG+A+ L
Sbjct: 75 LKGTYSESYRSLILNGHIDVAAVDESEEWKTPPFEATVNQGVIRGRGVADMKGGLAACLF 134
Query: 103 MLEQLKKEEKDLNVGIVFVS--DEEKGGRGSALFMER-YRPKMAIVLEPTDLEVHIAHAG 159
++ L L ++F S EE G G+ ER Y +AIV + + E+ G
Sbjct: 135 AMKTLHAFNIQLPGDLIFQSVVGEEVGEAGTKSCCERGYTADLAIVSDTSHCEIQ-GQGG 193
Query: 160 NIEAYFEV-------DGKEA---HGACPESGVNAIEQVFEMLQKLKELEPFKVKGKY--- 206
I + V DG H E G +AIE++ +++Q L+ELE K
Sbjct: 194 VITGWITVKSPVTFHDGTRRNLIHAGGGEFGASAIEKMMKLIQGLQELERHWAVTKSSPG 253
Query: 207 FDPHIG-IQELICENPYY--LIPALCKGRLEARLLPNQEVEDVLDLI----------DPI 253
F P + I E + I CK + P++ E+++ + DP
Sbjct: 254 FPPGMNTINPAFIEGGRHPAFIADECKLWITIHYYPHESYEEIVREVEEHLLHVAKADPW 313
Query: 254 LDEYTIKYEYT---------EIWDGYELSEDEEIVQIAKSAMEVVGLDEFGAMRSWT--D 302
+ E+ + + EI+ +++ E + VQ+ K + +E S T D
Sbjct: 314 MREHPPSFSWGGTSMIEDKGEIFPAFQIDEQSDAVQLLKKIHYHLTGEEVKTSMSQTVTD 373
Query: 303 AINFTYNGTKTIVFGPGNLDISHTKHERIDVRDVVKASEFLL 344
G T++FGPG L+ +H+ +E +++ ++V+ ++ LL
Sbjct: 374 GGWLAEAGIPTLLFGPGKLEDAHSVNEELEIAELVQYTKTLL 415
>pir||H64486 hypothetical protein MJ1497 - Methanococcus jannaschii
>gi|1592133|gb|AAB99508.1| (U67590) acetylornithine
deacetylase (argE) [Methanococcus jannaschii]
Length = 346
Score = 70.6 bits (170), Expect = 3e-11
Identities = 69/297 (23%), Positives = 128/297 (42%), Gaps = 49/297 (16%)
Query: 62 ELFYEVHMDTIEPRAEPFVRGNIVYGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVFV 121
+L H+DT++ ++ N YGTG D KG +++LM+ L +V
Sbjct: 59 DLILNSHIDTVKIQSNFKKDDNNFYGTGVIDAKG---NVVLMIHAFLNSNNSL---LVIS 112
Query: 122 SDEEKGGRGSALFMERYRPK-------MAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHG 174
DEE G F + R K IV EPTDL V I H G E E G+ H
Sbjct: 113 PDEETESNGIYNFCQYLRNKNKIQRGIKCIVGEPTDLNVCIGHKGRFEYIVESFGEARHA 172
Query: 175 ACPESGVNAIEQVFEMLQKLKELEPFKVKGKYFDPHIGIQELICENPYYLIPALCKGRLE 234
+ G+N IE + ++ LK L K+K + ++ + + P + KG ++
Sbjct: 173 S--SQGLNPIEILSRVILDLKNLPLEKIK---------VDKIYSSS---ITPTIIKGGIQ 218
Query: 235 ARLLPNQ-----EVEDVLDLIDPILDEYTIKYEYTE----------IWDGYELSEDEEIV 279
+ ++P+ +V V I +D++ + Y++ + + + E++E++
Sbjct: 219 SNIIPDYAYVLFDVRSVEKDIIKKIDDFLSQKNYSKHIKSSLNPERHYANFYMLENKELI 278
Query: 280 QIAKSAMEVVGLDEFGAMRSWTDAINFT-YNGTKTIVFGPGNLDISHTKHERIDVRD 335
++ + +A F + TI++G G L+++H+K E +++ D
Sbjct: 279 NKLSKHFKI------SFFNATCEAYYFNKFLKADTIIYGVGKLELAHSKEEYLNLND 329
>sp|P57155|ARGE_BUCAI ACETYLORNITHINE DEACETYLASE (ACETYLORNITHINASE) (AO)
(N-ACETYLORNITHINASE) (NAO) >gi|10038735|dbj|BAB12770.1|
(AP001118) acetylornithine deacetylase [Buchnera sp.
APS]
Length = 381
Score = 68.7 bits (165), Expect = 1e-10
Identities = 64/267 (23%), Positives = 129/267 (47%), Gaps = 24/267 (8%)
Query: 83 NIVYGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVFVSDEEKGGRGSALFMER--YRP 140
N YG GA D+KG A IL ++ + ++ + + I+ ++EE G+ F++ +P
Sbjct: 102 NKFYGLGAVDMKGFFALILEVISSINIKKINKPIYILATANEETDMSGARNFIQSTIIKP 161
Query: 141 KMAIVLEPTDLEVHIAHAGNIEAYFEVDGKEAHGACPESGVNAIEQVFEMLQKLKELEPF 200
I+ EPT L++ AH G++ +V G H + P+ GVN+IE + ++++ L L+ +
Sbjct: 162 DCIIIGEPTSLKLINAHKGHMSYSIKVIGDTGHSSNPDHGVNSIEIMHDVIRSLLILKKY 221
Query: 201 KVKGKYFDPHIGI-------QELICENPYYLIPALCKGRLEARLLPN---QEVEDVL-DL 249
K +Y P+ I + + I LC E R +P ++E V+ +
Sbjct: 222 -FKEEYQHPNFSIPYPTMNLSSIHGGSAINRICPLCILNFEIRPIPGLTLTQIEIVIKEK 280
Query: 250 IDPILDEYT----IKYEYTEIWDGYELSEDEEIVQIAKSAMEVVGLDEFGAMRSWTDAIN 305
++ I+ +++ IK ++ + YE + ++I + ++ A+ T+A
Sbjct: 281 LETIMKKWSHRIFIKKLFSSV-PAYECPHNSGTIKIVEKLCQL----NSAAVNYCTEA-P 334
Query: 306 FTYNGTKTIVFGPGNLDISHTKHERID 332
F T++ GPG+++ +H E ++
Sbjct: 335 FLQRIAPTLILGPGSIEQAHQPDEYLE 361
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.140 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137933540
Number of Sequences: 2977
Number of extensions: 6113163
Number of successful extensions: 15356
Number of sequences better than 1.0e-10: 29
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 15292
Number of HSP's gapped (non-prelim): 31
length of query: 354
length of database: 189,106,746
effective HSP length: 56
effective length of query: 298
effective length of database: 155,591,474
effective search space: 46366259252
effective search space used: 46366259252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)