BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0726 (PAB0726) DE:Hypothetical protein
         (182 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75088 hypothetical protein PAB0726 - Pyrococcus abyssi (st...   358  3e-98
pir||F71056 hypothetical protein PH1148 - Pyrococcus horikoshii ...   249  2e-65

>pir||D75088 hypothetical protein PAB0726 - Pyrococcus abyssi (strain Orsay)
           >gi|5458521|emb|CAB50009.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 182
           
 Score =  358 bits (908), Expect = 3e-98
 Identities = 182/182 (100%), Positives = 182/182 (100%)

Query: 1   MRRIKVPYIIFKTKSGIYGIDAYTSLRVEKVERAATLIRRFDKMPSMIKMEETELALISK 60
           MRRIKVPYIIFKTKSGIYGIDAYTSLRVEKVERAATLIRRFDKMPSMIKMEETELALISK
Sbjct: 1   MRRIKVPYIIFKTKSGIYGIDAYTSLRVEKVERAATLIRRFDKMPSMIKMEETELALISK 60

Query: 61  DNVGDFLIRLKDYTKNKAASKLNQRFKKMRRWNLFRFLGIPTGHSRHISEEERLAKENRE 120
           DNVGDFLIRLKDYTKNKAASKLNQRFKKMRRWNLFRFLGIPTGHSRHISEEERLAKENRE
Sbjct: 61  DNVGDFLIRLKDYTKNKAASKLNQRFKKMRRWNLFRFLGIPTGHSRHISEEERLAKENRE 120

Query: 121 ALLALSILNVVLKGDVEPLGYSFIELEIRDDGVYIDGKKDGVYTELLKVDMRAAIALLEL 180
           ALLALSILNVVLKGDVEPLGYSFIELEIRDDGVYIDGKKDGVYTELLKVDMRAAIALLEL
Sbjct: 121 ALLALSILNVVLKGDVEPLGYSFIELEIRDDGVYIDGKKDGVYTELLKVDMRAAIALLEL 180

Query: 181 AR 182
           AR
Sbjct: 181 AR 182


>pir||F71056 hypothetical protein PH1148 - Pyrococcus horikoshii
           >gi|3257565|dbj|BAA30248.1| (AP000005) 180aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 180
           
 Score =  249 bits (628), Expect = 2e-65
 Identities = 123/182 (67%), Positives = 151/182 (82%), Gaps = 2/182 (1%)

Query: 1   MRRIKVPYIIFKTKSGIYGIDAYTSLRVEKVERAATLIRRFDKMPSMIKMEETELALISK 60
           M+ I++PYIIF+TKSG+YGIDAYT+LRVEK ER ATLIR+F++MP +   E  E ALI K
Sbjct: 1   MKEIELPYIIFRTKSGLYGIDAYTALRVEKPERVATLIRKFNRMPEVT--ENHEFALIKK 58

Query: 61  DNVGDFLIRLKDYTKNKAASKLNQRFKKMRRWNLFRFLGIPTGHSRHISEEERLAKENRE 120
           + V +FL  +  Y K KA+SK+ +R  KMRRW LFR LGIPTGHSRHISEEERLAKENRE
Sbjct: 59  NEVEEFLYSVLKYAKEKASSKMKERVSKMRRWGLFRLLGIPTGHSRHISEEERLAKENRE 118

Query: 121 ALLALSILNVVLKGDVEPLGYSFIELEIRDDGVYIDGKKDGVYTELLKVDMRAAIALLEL 180
           ALLALSIL  +LKG++E LGYS I +E+R+DG+Y++G+ D VYTEL+KVDMRAA+ALLEL
Sbjct: 119 ALLALSILETILKGNLEVLGYSSINVEVREDGIYVNGELDRVYTELIKVDMRAAMALLEL 178

Query: 181 AR 182
           AR
Sbjct: 179 AR 180


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.140    0.385 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58586364
Number of Sequences: 2977
Number of extensions: 2228252
Number of successful extensions: 8973
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8970
Number of HSP's gapped (non-prelim): 2
length of query: 182
length of database: 189,106,746
effective HSP length: 56
effective length of query: 126
effective length of database: 155,591,474
effective search space: 19604525724
effective search space used: 19604525724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)