BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0729 (traB) DE:pheromone shutdown protein (traB) or
signaling protein
(225 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75088 pheromone shutdown protein (trab) or signaling prote... 435 e-121
pir||B71057 hypothetical protein PH1152 - Pyrococcus horikoshii ... 311 5e-84
pir||G69024 pheromone shutdown protein TraB - Methanobacterium t... 127 8e-29
gi|11497943 pheromone shutdown protein (traB) [Archaeoglobus ful... 113 1e-24
pir||D64470 probable pheromone shutdown protein - Methanococcus ... 107 1e-22
pir||C53309 prgY protein - Enterococcus faecalis plasmid pCF10 >... 91 1e-17
pir||G70151 pheromone shutdown protein (traB) homolog - Lyme dis... 89 4e-17
pir||A82557 pheromone shutdown protein XF2444 [imported] - Xylel... 80 2e-14
dbj|BAA06008.1| (D28859) TraB [Enterococcus faecalis] 80 3e-14
dbj|BAA11196.1| (D78016) TRAB [Enterococcus faecalis] 80 3e-14
gb|AAA67128.1| (U00681) TraB [Enterococcus faecalis] 78 6e-14
gb|AAF54893.1| (AE003698) CG12360 gene product [Drosophila melan... 78 8e-14
gb|AAG19317.1| (AE005027) possible signaling protein; TraB [Halo... 76 2e-13
emb|CAB63044.1| (AL022328) dJ402G11.4 (novel protein similar to ... 75 6e-13
emb|CAC15001.1| (AL449244) hypothetical protein [Homo sapiens] 75 6e-13
pir||T29896 hypothetical protein F38A5.2 - Caenorhabditis elegan... 69 4e-11
>pir||H75088 pheromone shutdown protein (trab) or signaling protein PAB0729 -
Pyrococcus abyssi (strain Orsay)
>gi|5458525|emb|CAB50013.1| (AJ248286) pheromone
shutdown protein (traB) or signaling protein [Pyrococcus
abyssi]
Length = 225
Score = 435 bits (1107), Expect = e-121
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MLNMSYLRYVKIVGTVHVSSESVNEVRRIILEEDPDAIALELDYERLLSLLSGSNLTFSQ 60
MLNMSYLRYVKIVGTVHVSSESVNEVRRIILEEDPDAIALELDYERLLSLLSGSNLTFSQ
Sbjct: 1 MLNMSYLRYVKIVGTVHVSSESVNEVRRIILEEDPDAIALELDYERLLSLLSGSNLTFSQ 60
Query: 61 AMKLGKMGILAYILQEVEIILGKELGTPPGSEMIEAFEVAKTLGIPVYMIDQPIRVTLRK 120
AMKLGKMGILAYILQEVEIILGKELGTPPGSEMIEAFEVAKTLGIPVYMIDQPIRVTLRK
Sbjct: 61 AMKLGKMGILAYILQEVEIILGKELGTPPGSEMIEAFEVAKTLGIPVYMIDQPIRVTLRK 120
Query: 121 LLSIPLGEKIRAMLDIISTFINPGAQTQLSFEDVEGLSFEFRRKYPTMYKILVEERNLYM 180
LLSIPLGEKIRAMLDIISTFINPGAQTQLSFEDVEGLSFEFRRKYPTMYKILVEERNLYM
Sbjct: 121 LLSIPLGEKIRAMLDIISTFINPGAQTQLSFEDVEGLSFEFRRKYPTMYKILVEERNLYM 180
Query: 181 ARNIMRIVDILLERKKKVKVVAVVGLGHKKGIEKILSRSFPKGVH 225
ARNIMRIVDILLERKKKVKVVAVVGLGHKKGIEKILSRSFPKGVH
Sbjct: 181 ARNIMRIVDILLERKKKVKVVAVVGLGHKKGIEKILSRSFPKGVH 225
>pir||B71057 hypothetical protein PH1152 - Pyrococcus horikoshii
>gi|3257569|dbj|BAA30252.1| (AP000005) 223aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 223
Score = 311 bits (788), Expect = 5e-84
Identities = 152/225 (67%), Positives = 193/225 (85%), Gaps = 2/225 (0%)
Query: 1 MLNMSYLRYVKIVGTVHVSSESVNEVRRIILEEDPDAIALELDYERLLSLLSGSNLTFSQ 60
ML MSYLRYV+I+GTVHVS +SV EVR IIL E+PDA+A+ELDY RLLSLL+GS+LTFSQ
Sbjct: 1 MLGMSYLRYVRIIGTVHVSPQSVKEVRNIILRENPDAVAVELDYGRLLSLLNGSSLTFSQ 60
Query: 61 AMKLGKMGILAYILQEVEIILGKELGTPPGSEMIEAFEVAKTLGIPVYMIDQPIRVTLRK 120
A+KLGK+GILAY+LQ VE+ LGK++G PGSEMIEAFEVA++LGIP+YMID PI+VTL++
Sbjct: 61 AIKLGKIGILAYLLQGVEMALGKQVGVLPGSEMIEAFEVARSLGIPIYMIDMPIQVTLKR 120
Query: 121 LLSIPLGEKIRAMLDIISTFINPGAQTQLSFEDVEGLSFEFRRKYPTMYKILVEERNLYM 180
L S+P+ EKIR +++I + + P + +L+ ED L EF+RKYPT+YKILVEERN +M
Sbjct: 121 LFSVPIEEKIRGIIEIFLSIVYP--KVELNLEDYISLELEFKRKYPTVYKILVEERNEFM 178
Query: 181 ARNIMRIVDILLERKKKVKVVAVVGLGHKKGIEKILSRSFPKGVH 225
ARN+MRIVDILLERKKK+K++AVVGLGHK+GIE+ILS PK ++
Sbjct: 179 ARNLMRIVDILLERKKKIKIIAVVGLGHKRGIERILSHYSPKSIY 223
>pir||G69024 pheromone shutdown protein TraB - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622291|gb|AAB85672.1| (AE000887) pheromone shutdown
protein TraB [Methanobacterium thermoautotrophicum]
Length = 234
Score = 127 bits (317), Expect = 8e-29
Identities = 81/223 (36%), Positives = 133/223 (59%), Gaps = 21/223 (9%)
Query: 7 LRYVKIVGTVHVSSESVNEVRRIILEEDPDAIALELDYERLLSLL------SGSNLTFSQ 60
++ ++I+GT HVSSES++EVRR ILE +PD +A+ELD ER L+ + +
Sbjct: 3 MKELRIIGTAHVSSESIDEVRRTILEMEPDVVAVELDPERYRRLMDEKLGVQRDEPSLRE 62
Query: 61 AMKLGKMGIL--AYILQEVEIILGKELGTPPGSEMIEAFEVAKTLGIPVYMIDQPIRVTL 118
A++ G +G++ + L + +G++LG PGSEM+ A E A +G + +ID+ I +T+
Sbjct: 63 ALRHGNIGVILAGWFLTYFQRKVGEDLGVQPGSEMLAAIEAAHEVGAGLALIDRDIGLTM 122
Query: 119 -RKLLSIPLGEKIRAMLDIISTFI---NPGAQTQLSFED-VEGLSFEFRRKYPTMYKILV 173
R + S+ EK+R II +F+ +P L +D + + EFR+ P Y++LV
Sbjct: 123 QRSIKSMGRMEKLRFFAGIIRSFLWKDDPKDIEDLKSDDTLLEVMEEFRKISPAAYRVLV 182
Query: 174 EERNLYMARNIMRIVDILLERKKKVKVVAVVGLGHKKGIEKIL 216
EER+ +MA ++ I ++ +VVAVVG GH++GIE+ L
Sbjct: 183 EERDAFMAHRLLSI--------EEDRVVAVVGAGHRRGIEEYL 217
>gi|11497943 pheromone shutdown protein (traB) [Archaeoglobus fulgidus]
>gi|7429557|pir||C69291 pheromone shutdown protein
(traB) homolog - Archaeoglobus fulgidus
>gi|2650316|gb|AAB90915.1| (AE001082) pheromone shutdown
protein (traB) [Archaeoglobus fulgidus]
Length = 396
Score = 113 bits (281), Expect = 1e-24
Identities = 75/213 (35%), Positives = 120/213 (56%), Gaps = 14/213 (6%)
Query: 12 IVGTVHVSSESVNEVRRIILEEDPDAIALELDYERLLSLLSG--SNLTFSQAMKLGKMGI 69
IVGT HVS SV EV +I E PDA+A+EL R +L+ G ++ + ++ G + +
Sbjct: 8 IVGTAHVSKRSVEEVAEVIEREKPDAVAVELCPRRYHALVHGQREEISVADVIRKGNVFM 67
Query: 70 LAY--ILQEVEIILGKELGTPPGSEMIEAFEVAKTLGIPVYMIDQPIRVTLRKL-LSIPL 126
L + IL + +G+E G PGSEM+ A E A+ G V +ID+ I +T + +
Sbjct: 68 LLFQLILAYFQRKVGEETGVKPGSEMLAAIEKAREAGADVLLIDRDIGLTFTRFWQKLTF 127
Query: 127 GEKIRAMLDII-STFINPGAQTQLSFED--VEGLSFEFRRKYPTMYKILVEERNLYMARN 183
EKI+ + ++ STF + E+ ++ L EFR+ P K+L++ER++YMA N
Sbjct: 128 VEKIKLIFHLVRSTFSGDEIEVDEMLEEDVLDMLVKEFRKISPNAAKVLIDERDVYMAAN 187
Query: 184 IMRIVDILLERKKKVKVVAVVGLGHKKGIEKIL 216
++ + + ++VAVVG GH+KGIE+ L
Sbjct: 188 LLNAL------SRYNRIVAVVGAGHRKGIEEAL 214
>pir||D64470 probable pheromone shutdown protein - Methanococcus jannaschii
>gi|1592009|gb|AAB99373.1| (U67576) pheromone shutdown
protein (traB) [Methanococcus jannaschii]
Length = 397
Score = 107 bits (264), Expect = 1e-22
Identities = 68/223 (30%), Positives = 116/223 (51%), Gaps = 25/223 (11%)
Query: 10 VKIVGTVHVSSESVNEVRRIILEEDPDAIALELDYERLLSLLSGSNLTFSQAMKLGKMGI 69
+ ++GT HVS +S+ EV +II P+ IA+ELD R SL++ L +
Sbjct: 19 IYLIGTAHVSKDSIEEVEKIISSVSPEGIAVELDDRRFFSLITNEEKKVDLKKVLKEGNF 78
Query: 70 LAY----ILQEVEIILGKELGTPPGSEMIEAFEVAKTLGIPVYMIDQPIRVTLRKLLS-I 124
L + IL + +G+ G PGSEM +A E+A G+P+Y+ID+ I +TL +L+ +
Sbjct: 79 LKFFIYLILANSQKKIGESFGIKPGSEMKKAIEIASKYGLPIYLIDRDIDITLSRLMDRM 138
Query: 125 PLGEKIRAMLDIISTFINPGAQTQLSFED---------VEGLSFEFRRKYPTMYKILVEE 175
EK++ +++++ + L +D E + PT+Y++LV+E
Sbjct: 139 TFKEKMKIFWELLNS-----DEEDLELDDDLLNDMVKNPEKFIKLLKEISPTIYEVLVDE 193
Query: 176 RNLYMARNIMRIVDILLERKKKVKVVAVVGLGHKKGIEKILSR 218
R+ +MA+ + + K K +VAVVG GH +GI + L +
Sbjct: 194 RDRFMAKRLFEL------SKNKNSLVAVVGAGHVEGIVRYLKK 230
>pir||C53309 prgY protein - Enterococcus faecalis plasmid pCF10
>gi|309663|gb|AAA25555.1| (L14285) signaling protein
[Plasmid pCF10]
Length = 383
Score = 90.9 bits (222), Expect = 1e-17
Identities = 65/217 (29%), Positives = 117/217 (52%), Gaps = 22/217 (10%)
Query: 12 IVGTVHVSSESVNEVRRIILEEDPDAIALELD---YERLLSLLSGSNLTFSQAMKLGKMG 68
+VGT H+SSES V+ II EE+PD + LE D Y++ L+ S+ Q +K ++
Sbjct: 16 LVGTAHISSESAELVKNIIEEENPDVVCLEWDQSRYDKYLNPDEWSDTDIVQVIKQKRLT 75
Query: 69 IL--AYILQEVEIILGKELGTPPGSEMIEAFEVAKTLGIPVYMIDQPIRVTLRKLLS-IP 125
+L + I + ++ L K + G+E EA A+ +G + ++D+ +VT ++ IP
Sbjct: 76 VLISSVIYKLIQKHLAKINDSVAGAEFFEAVSSAEKVGAKIALVDRDSQVTFKRFWRLIP 135
Query: 126 LGEKIRAMLDIISTFINPGAQTQ------LSFEDVEGLSFEFRRKYPTMYKILVEERNLY 179
L +K A+L + GA+++ L+ E+ E + + + YP ++K+L+ ER+ Y
Sbjct: 136 LRKK--ALLPYAFGSVLEGAESEEEMLKLLNSENFEPIFEQLQEAYPELWKVLLVERDQY 193
Query: 180 MARNIMRIVDILLERKKKVKVVAVVGLGHKKGIEKIL 216
+A+ I ++ K+V V+G H +G+EK L
Sbjct: 194 LAQKI--------SDQEAGKIVVVIGQAHLRGVEKNL 222
>pir||G70151 pheromone shutdown protein (traB) homolog - Lyme disease spirochete
>gi|2688316|gb|AAC66783.1| (AE001146) pheromone shutdown
protein (traB) [Borrelia burgdorferi]
Length = 404
Score = 88.9 bits (217), Expect = 4e-17
Identities = 70/220 (31%), Positives = 110/220 (49%), Gaps = 22/220 (10%)
Query: 10 VKIVGTVHVSSESVNEVRRIILEEDPDAIALELDYERLLSLLSGS------NLTFSQAMK 63
+ I+GT HVS +S + +I PD IA+ELD R S+L+ + NL +A+K
Sbjct: 27 IYILGTAHVSKKSSEDTANLIEILKPDYIAVELDEARYHSILNTNENEKWRNLDIDKALK 86
Query: 64 LGKMG--ILAYILQEVEIILGKELGTPPGSEMIEAFEVAKTLGIPVYMIDQPIRVTLRKL 121
GK I+ IL + L KE G PG EM A AK IP+ + D+ I TL++
Sbjct: 87 QGKAFFLIINIILSNFQKKLAKEQGIKPGEEMKTAILKAKKHNIPLILADRKIETTLKRA 146
Query: 122 -LSIPLGEK---IRAMLDIISTFINPGAQTQLSFED-VEGLSFEFRRKYPTMYKILVEER 176
+SIP+ EK I ++ + I +L +D + + E ++ P + K+L++ER
Sbjct: 147 WISIPIFEKAKIISSLFSLTDAKITKDEIEKLKEQDALSKIMEELSKEIPKVKKVLIDER 206
Query: 177 NLYMARNIMRIVDILLERKKKVKVVAVVGLGHKKGIEKIL 216
+ ++ I+ I+L A+VG GH GI + L
Sbjct: 207 DEFITNKILEGEGIIL---------AIVGAGHVSGIMRTL 237
>pir||A82557 pheromone shutdown protein XF2444 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9107637|gb|AAF85243.1|AE004053_6
(AE004053) pheromone shutdown protein [Xylella
fastidiosa]
Length = 405
Score = 80.4 bits (195), Expect = 2e-14
Identities = 66/221 (29%), Positives = 114/221 (50%), Gaps = 25/221 (11%)
Query: 12 IVGTVHVSSESVNEVRRIILEEDPDAIALELDYERLLSLLSG---SNLTFSQAMKLGKMG 68
++GT H+S SV V++ + DAIA+ELD +RL +L + L Q ++ G++
Sbjct: 29 LLGTAHISQASVAAVKQEVESGCYDAIAVELDAQRLQALCDPDTLAKLDLIQVIRKGQLA 88
Query: 69 ILA--YILQEVEIILGKELGTPPGSEMIEAFEVAKTLGIPVYMIDQPIRVTLRKLLSIPL 126
+ A L + L K+LG PG+E+ A +A+ +PV++ID+ + +T ++ S L
Sbjct: 89 LFAANLALAAYQRRLAKQLGIEPGAELKTAVTMARERDLPVHLIDREVGLTFKR-ASAKL 147
Query: 127 G--EKIRAMLDIISTFINPGAQTQLSFEDVEGL--------SF-EFRRKYPTMYKILVEE 175
G K++ +I+ A ++ E++E L SF +F + P +Y+ ++ E
Sbjct: 148 GFLGKLKLGSGLIAGLF---AADEVGEEEIEKLKQGDMLEASFGDFASESPELYQTIIAE 204
Query: 176 RNLYMARNIMRIVDILLERKKKVKVVAVVGLGHKKGIEKIL 216
R+ YMA + V+ KV+ VVG GH G+ K L
Sbjct: 205 RDRYMATRLREEVN-----STTPKVLVVVGAGHLTGLAKHL 240
>dbj|BAA06008.1| (D28859) TraB [Enterococcus faecalis]
Length = 384
Score = 79.6 bits (193), Expect = 3e-14
Identities = 60/220 (27%), Positives = 111/220 (50%), Gaps = 23/220 (10%)
Query: 8 RYVKIVGTVHVSSESVNEVRRIILEEDPDAIALELD---YERLLSLLSGSNLTFSQAMKL 64
R + +VGT H+S ES V+ +I +E PD + LE D Y + ++ S+ Q +K
Sbjct: 12 REIILVGTSHISKESAELVKEVIEKESPDTVCLEWDKTRYNKYMNPDEWSDTDIVQVIKQ 71
Query: 65 GKMGIL--AYILQEVEIILGKELGTPPGSEMIEAFEVAKTLGIPVYMIDQPIRVTLRKLL 122
K+ +L + I ++ L K + PG+E +A A+ +G + ++D+ +VT ++
Sbjct: 72 KKLIVLISSVIYSLIQNHLAKINDSVPGAEFFQAVNSAEKIGAKLALVDRDSQVTFKRFW 131
Query: 123 S-IPLGEKIRAMLDIISTFINPGAQTQ-------LSFEDVEGLSFEFRRKYPTMYKILVE 174
IPL +K A+ + GA+ L+ E+ E + + ++ YP +++ +
Sbjct: 132 RLIPLRKK--ALFPHAFGKVLEGAEDSKEEMKKLLNSENFEPIFEQLQQTYPELWESFLI 189
Query: 175 ERNLYMARNIMRIVDILLERKKKVKVVAVVGLGHKKGIEK 214
ER+LYM+ I+ ++ K+V V+G H G+EK
Sbjct: 190 ERDLYMSTKIL--------NEEGEKIVVVIGQAHLNGVEK 221
>dbj|BAA11196.1| (D78016) TRAB [Enterococcus faecalis]
Length = 384
Score = 79.6 bits (193), Expect = 3e-14
Identities = 60/220 (27%), Positives = 111/220 (50%), Gaps = 23/220 (10%)
Query: 8 RYVKIVGTVHVSSESVNEVRRIILEEDPDAIALELD---YERLLSLLSGSNLTFSQAMKL 64
R + +VGT H+S ES V+ +I +E PD + LE D Y + ++ S+ Q +K
Sbjct: 12 REIILVGTSHISKESAELVKEVIEKESPDTVCLEWDKTRYNKYMNPDEWSDTDIVQVIKQ 71
Query: 65 GKMGIL--AYILQEVEIILGKELGTPPGSEMIEAFEVAKTLGIPVYMIDQPIRVTLRKLL 122
K+ +L + I ++ L K + PG+E +A A+ +G + ++D+ +VT ++
Sbjct: 72 KKLIVLISSVIYSLIQKHLAKINDSVPGAEFFQAVNSAEKIGAKLALVDRDSQVTFKRFW 131
Query: 123 S-IPLGEKIRAMLDIISTFINPGAQTQ-------LSFEDVEGLSFEFRRKYPTMYKILVE 174
IPL +K A+ + GA+ L+ E+ E + + ++ YP +++ +
Sbjct: 132 RLIPLRKK--ALFPHAFGKVLEGAEDSKEEMKKLLNSENFEPIFEQLQQTYPELWESFLI 189
Query: 175 ERNLYMARNIMRIVDILLERKKKVKVVAVVGLGHKKGIEK 214
ER+LYM+ I+ ++ K+V V+G H G+EK
Sbjct: 190 ERDLYMSTKIL--------NEEGEKIVVVIGQAHLNGVEK 221
>gb|AAA67128.1| (U00681) TraB [Enterococcus faecalis]
Length = 388
Score = 78.4 bits (190), Expect = 6e-14
Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 17/216 (7%)
Query: 12 IVGTVHVSSESVNEVRRIILEEDPDAIALELD---YERLLSLLSGSNLTFSQAMKLGKMG 68
+VGT H+S SV V+ +I PD +++ELD YE+ + N + +K K+
Sbjct: 22 LVGTSHISENSVKLVKEVIERVQPDTVSIELDKKRYEKYTNSNQWGNTDIIKIIKEKKLV 81
Query: 69 ILA--YILQEVEIILGKELGTPPGSEMIEAFEVAKTLGIPVYMIDQPIRVTLRKL-LSIP 125
+L + + L GT E+I+A + AK +G + +ID+ I+VT +++ +
Sbjct: 82 VLISNIVYSAYQKKLANTKGTTQAGELIQAIKSAKEIGANIQLIDRDIQVTFKRMWRHLS 141
Query: 126 LGEKIRAMLDIISTFIN---PGAQTQLSFEDVEGLSFEFRRKYPTMYKILVEERNLYMAR 182
EK + + + F + + L + + + +KYP++Y+ ++ +R+ YM+
Sbjct: 142 FLEKPKLFMTFFTEFDDIEQDKLEEYLESDSFDKVFISLSKKYPSLYQDMITDRDKYMST 201
Query: 183 NIMRIVDILLERKKKVKVVAVVGLGHKKGIEKILSR 218
L +V VV VVG H KGI++ L +
Sbjct: 202 K-------LKNNSSQVNVV-VVGKAHMKGIKEKLEK 229
>gb|AAF54893.1| (AE003698) CG12360 gene product [Drosophila melanogaster]
Length = 532
Score = 78.0 bits (189), Expect = 8e-14
Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 35/252 (13%)
Query: 1 MLNMSYLRYVKIVGTVHVSSESVNEVRRIILEEDPDAIALELDYER--LLSLLSGSNLTF 58
+LN + V +VGT H S ES ++V +I PD + +EL R +L L + L
Sbjct: 244 LLNTPFGSKVYLVGTAHFSEESQDDVSYVIRNVRPDVVMVELCPSRIHILKLDEKTLLEE 303
Query: 59 SQAMKLGKM-----------GILAYILQEVEIILGKELGTPPGSEMIEAF-EVAKTLGIP 106
++++ + K+ GI +L ++ + K+LG PG E AF E+ K G
Sbjct: 304 AKSINIPKIRGILHTHGYINGIFFILLLQMSAQIAKDLGMAPGGEFRRAFEEIHKLPGCI 363
Query: 107 VYMIDQPIRVTL-RKLLSIPLGEKIRAMLDIISTFINPGAQTQLSFEDV---------EG 156
+++ D+PIR+TL R L ++ + + ++ + + T +S E+V E
Sbjct: 364 LHLGDRPIRITLYRALRALSMWQTMKLVWRLTFT-------DSISIEEVEECKQSDLLEK 416
Query: 157 LSFEFRRKYPTMYKILVEERNLYMARNIMRIVDILL----ERKKKVKVVAVVGLGHKKGI 212
L E ++P + V ER++++ ++ ++ + V+VV VVG+GH GI
Sbjct: 417 LMQEMAGEFPAFSDVFVRERDVFLCHSLQLAALPQAAPGGQQVRPVRVVGVVGIGHANGI 476
Query: 213 EKILSRSFPKGV 224
K+ PK +
Sbjct: 477 AKMWGTVDPKKI 488
>gb|AAG19317.1| (AE005027) possible signaling protein; TraB [Halobacterium sp.
NRC-1]
Length = 504
Score = 76.5 bits (185), Expect = 2e-13
Identities = 49/128 (38%), Positives = 78/128 (60%), Gaps = 7/128 (5%)
Query: 10 VKIVGTVHVSSESVNEVRRIILEEDPDAIALELDYERLLSLLSGS--NLTFSQAMKLGKM 67
V++VGT HVSS+SV EV R+I +E PD +A+ELD R + + +L + +K G M
Sbjct: 14 VRVVGTAHVSSDSVEEVERVIDDEHPDTVAVELDEGRFRQMQGDAPDDLDATDLLK-GSM 72
Query: 68 G--ILAY-ILQEVEIILGKELGTPPGSEMIEAFEVAKTLGIPVYMIDQPIRVTLRKLLS- 123
LAY +L + LG++ G PG++M A + A T G V ++D+ I+VT+++ +
Sbjct: 73 AFQFLAYWLLSYAQRRLGEKFGIEPGADMQAAVDAANTAGADVALVDRDIQVTIQRFWAR 132
Query: 124 IPLGEKIR 131
+ L EK+R
Sbjct: 133 MSLPEKLR 140
>emb|CAB63044.1| (AL022328) dJ402G11.4 (novel protein similar to C. elegans F38A5.2
(isoform 2)) [Homo sapiens]
Length = 304
Score = 75.3 bits (182), Expect = 6e-13
Identities = 69/232 (29%), Positives = 116/232 (49%), Gaps = 27/232 (11%)
Query: 10 VKIVGTVHVSSESVNEVRRIILEEDPDAIALELDYER--LLSLLSGSNLTFSQAMKLGKM 67
V +VGT H S +S +V + I E PD + +EL R +L + + L +Q + L K+
Sbjct: 3 VYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKL 62
Query: 68 -----------GILAYILQEVEIILGKELGTPPGSEMIEAF-EVAKTLGIPVYMIDQPIR 115
G++ +L +V + ++LG PG E EAF E +K ++ D+PI
Sbjct: 63 QQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIP 122
Query: 116 VTL-RKLLSIPLGEKIRAM--LDIISTFINPGAQTQLSFED-VEGLSFEFRRKYPTMYKI 171
VT R + ++ +K+R L +S I+ + +D +E + E ++P +++
Sbjct: 123 VTFKRAIAALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRT 182
Query: 172 LVEERNL---YMARNIMRIVDIL----LERKKKVK--VVAVVGLGHKKGIEK 214
+V ER++ YM R R +++ E +K V VV VVG+GH GIEK
Sbjct: 183 IVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 234
>emb|CAC15001.1| (AL449244) hypothetical protein [Homo sapiens]
Length = 376
Score = 75.3 bits (182), Expect = 6e-13
Identities = 69/232 (29%), Positives = 116/232 (49%), Gaps = 27/232 (11%)
Query: 10 VKIVGTVHVSSESVNEVRRIILEEDPDAIALELDYER--LLSLLSGSNLTFSQAMKLGKM 67
V +VGT H S +S +V + I E PD + +EL R +L + + L +Q + L K+
Sbjct: 75 VYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKL 134
Query: 68 -----------GILAYILQEVEIILGKELGTPPGSEMIEAF-EVAKTLGIPVYMIDQPIR 115
G++ +L +V + ++LG PG E EAF E +K ++ D+PI
Sbjct: 135 QQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIP 194
Query: 116 VTL-RKLLSIPLGEKIRAM--LDIISTFINPGAQTQLSFED-VEGLSFEFRRKYPTMYKI 171
VT R + ++ +K+R L +S I+ + +D +E + E ++P +++
Sbjct: 195 VTFKRAIAALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRT 254
Query: 172 LVEERNL---YMARNIMRIVDIL----LERKKKVK--VVAVVGLGHKKGIEK 214
+V ER++ YM R R +++ E +K V VV VVG+GH GIEK
Sbjct: 255 IVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 306
>pir||T29896 hypothetical protein F38A5.2 - Caenorhabditis elegans
>gi|1572802|gb|AAB09147.1| (U70854) similar to
Enterococcus faecalis TRAB (GI:388268) [Caenorhabditis
elegans]
Length = 465
Score = 69.1 bits (166), Expect = 4e-11
Identities = 72/240 (30%), Positives = 103/240 (42%), Gaps = 42/240 (17%)
Query: 10 VKIVGTVHVSSESVNEVRRIILEEDPDAIALEL----------DYERLLSLLSGSN-LTF 58
+ ++GT H S ES +V I PD + LEL D RLLS N
Sbjct: 170 IYLIGTAHFSKESQEDVSNTIRAVQPDFVMLELCPSRISIISMDEARLLSEAKDLNSQKI 229
Query: 59 SQAMKLGK--MGILAYILQEVEIILGKELGTPPGSEMIEAFEVA-KTLGIPVYMIDQPIR 115
Q MK GIL +L + + +EL PG E A A T V + D+PI+
Sbjct: 230 IQTMKQNGAIQGILHVLLLSMSAHVTRELSMAPGGEFRAAHRAAVATENCRVVLGDRPIQ 289
Query: 116 VTL-RKLLSIPLGEKIRAMLDIISTFINPGAQTQLSFEDV---------EGLSFEFRRKY 165
VTL R L S+ + +KIR + + + +++ E+V E L E +
Sbjct: 290 VTLQRALASLSIWQKIRFFFHVAFSH-----REKITAEEVERCKQRDLLEQLLAEMADDF 344
Query: 166 PTMYKILVEERNLYMARNIMRIVDILLERKK-------------KVKVVAVVGLGHKKGI 212
P + +I VEER+ YM + +V K+ + VVAVVG+GH GI
Sbjct: 345 PQLSQIFVEERDAYMTHALHMLVHRNSVEKRAQWLRGTTGQQFQPLTVVAVVGIGHTPGI 404
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.141 0.380
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74265245
Number of Sequences: 2977
Number of extensions: 2851855
Number of successful extensions: 10326
Number of sequences better than 1.0e-10: 16
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 10280
Number of HSP's gapped (non-prelim): 17
length of query: 225
length of database: 189,106,746
effective HSP length: 57
effective length of query: 168
effective length of database: 154,992,987
effective search space: 26038821816
effective search space used: 26038821816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)