BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0731 (rpl21E) DE:LSU ribosomal protein L21E (rpl21E)
(97 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75089 lsu ribosomal protein l21e (rpl21e) PAB0731 - Pyroco... 207 3e-53
sp|O74001|RL21_PYRHO 50S RIBOSOMAL PROTEIN L21E >gi|7441086|pir|... 204 3e-52
sp|P54013|RL21_METJA 50S RIBOSOMAL PROTEIN L21E >gi|2826238|gb|A... 136 5e-32
pir||H64304 ribosomal protein L21 - Methanococcus jannaschii 136 5e-32
gi|11499124 LSU ribosomal protein L21E (rpl21E) [Archaeoglobus f... 116 5e-26
sp|O27378|RL21_METTH 50S RIBOSOMAL PROTEIN L21E >gi|7441087|pir|... 101 2e-21
sp|P12734|RL21_HALMA 50S RIBOSOMAL PROTEIN L21E (HL31) >gi|71334... 90 5e-18
gb|AAK41047.1| LSU ribosomal protein L21E (rpl21E) [Sulfolobus s... 89 1e-17
emb|CAB57551.1| (Y18930) ribosomal protein L21E,A [Sulfolobus so... 89 1e-17
emb|CAC12419.1| (AL445067) probable ribosomal protein L21E [Ther... 81 3e-15
gb|AAG19547.1| (AE005045) 50S ribosomal protein L21E; Rpl21e [Ha... 81 4e-15
>pir||C75089 lsu ribosomal protein l21e (rpl21e) PAB0731 - Pyrococcus abyssi
(strain Orsay) >gi|5458528|emb|CAB50016.1| (AJ248286)
LSU ribosomal protein L21E (rpl21E) [Pyrococcus abyssi]
Length = 97
Score = 207 bits (521), Expect = 3e-53
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MVQKAHSFRRKTRKKLRKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHG 60
MVQKAHSFRRKTRKKLRKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHG
Sbjct: 1 MVQKAHSFRRKTRKKLRKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHG 60
Query: 61 RTGTVVGKRGDAYIVEVPDGNKVKTLFIHPVHLRPQK 97
RTGTVVGKRGDAYIVEVPDGNKVKTLFIHPVHLRPQK
Sbjct: 61 RTGTVVGKRGDAYIVEVPDGNKVKTLFIHPVHLRPQK 97
>sp|O74001|RL21_PYRHO 50S RIBOSOMAL PROTEIN L21E >gi|7441086|pir||A71054 probable
ribosomal protein L21 - Pyrococcus horikoshii
>gi|3257544|dbj|BAA30227.1| (AP000005) 97aa long
hypothetical 50S ribosomal protein L21 [Pyrococcus
horikoshii]
Length = 97
Score = 204 bits (513), Expect = 3e-52
Identities = 95/97 (97%), Positives = 96/97 (98%)
Query: 1 MVQKAHSFRRKTRKKLRKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHG 60
MVQK HSFRRKTRKKLRKHPRRRGLPPLTRFLQEFEVGQ+VHIVIEPSYHKGMPDPRFHG
Sbjct: 1 MVQKPHSFRRKTRKKLRKHPRRRGLPPLTRFLQEFEVGQKVHIVIEPSYHKGMPDPRFHG 60
Query: 61 RTGTVVGKRGDAYIVEVPDGNKVKTLFIHPVHLRPQK 97
RTGTVVGKRGDAYIVEVPDGNKVKTLFIHPVHLRPQK
Sbjct: 61 RTGTVVGKRGDAYIVEVPDGNKVKTLFIHPVHLRPQK 97
>sp|P54013|RL21_METJA 50S RIBOSOMAL PROTEIN L21E >gi|2826238|gb|AAB98021.1| (U67462)
LSU ribosomal protein L21E [Methanococcus jannaschii]
Length = 98
Score = 136 bits (340), Expect = 5e-32
Identities = 64/95 (67%), Positives = 75/95 (78%)
Query: 1 MVQKAHSFRRKTRKKLRKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHG 60
MVQ + FRRKTRKKL KHPR RGL P+TR L+EF+ G+ VHIVI+PS HKGMP PRFHG
Sbjct: 1 MVQMSEGFRRKTRKKLSKHPRERGLYPITRALREFKEGEYVHIVIDPSVHKGMPHPRFHG 60
Query: 61 RTGTVVGKRGDAYIVEVPDGNKVKTLFIHPVHLRP 95
RTG VVGK+G A+IV+V DG K K + +P HLRP
Sbjct: 61 RTGIVVGKQGRAFIVKVRDGGKYKQIIAYPQHLRP 95
>pir||H64304 ribosomal protein L21 - Methanococcus jannaschii
Length = 118
Score = 136 bits (340), Expect = 5e-32
Identities = 64/95 (67%), Positives = 75/95 (78%)
Query: 1 MVQKAHSFRRKTRKKLRKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHG 60
MVQ + FRRKTRKKL KHPR RGL P+TR L+EF+ G+ VHIVI+PS HKGMP PRFHG
Sbjct: 21 MVQMSEGFRRKTRKKLSKHPRERGLYPITRALREFKEGEYVHIVIDPSVHKGMPHPRFHG 80
Query: 61 RTGTVVGKRGDAYIVEVPDGNKVKTLFIHPVHLRP 95
RTG VVGK+G A+IV+V DG K K + +P HLRP
Sbjct: 81 RTGIVVGKQGRAFIVKVRDGGKYKQIIAYPQHLRP 115
>gi|11499124 LSU ribosomal protein L21E (rpl21E) [Archaeoglobus fulgidus]
>gi|6094028|sp|O28743|RL21_ARCFU 50S RIBOSOMAL PROTEIN
L21E >gi|7441088|pir||H69440 LSU ribosomal protein L21E
(rpl21E) homolog - Archaeoglobus fulgidus
>gi|2649035|gb|AAB89719.1| (AE000997) LSU ribosomal
protein L21E (rpl21E) [Archaeoglobus fulgidus]
Length = 97
Score = 116 bits (289), Expect = 5e-26
Identities = 55/93 (59%), Positives = 71/93 (76%), Gaps = 1/93 (1%)
Query: 4 KAHSFRRKTRKKLRKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHGRTG 63
K+H FR K+ +KLRK R +G+ + +FLQ F+VGQRVHI IEP+ KGMP PRF GRTG
Sbjct: 4 KSHGFRFKSGRKLRKKVREKGVR-IRKFLQTFDVGQRVHIDIEPASQKGMPHPRFQGRTG 62
Query: 64 TVVGKRGDAYIVEVPDGNKVKTLFIHPVHLRPQ 96
V+G+RG AY+V+V DG K+KTL + P HL+PQ
Sbjct: 63 VVIGQRGRAYLVQVRDGGKMKTLIVRPEHLKPQ 95
>sp|O27378|RL21_METTH 50S RIBOSOMAL PROTEIN L21E >gi|7441087|pir||H69042 ribosomal
protein L21 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622429|gb|AAB85801.1| (AE000896)
ribosomal protein L21 [Methanobacterium
thermoautotrophicum]
Length = 96
Score = 101 bits (250), Expect = 2e-21
Identities = 47/96 (48%), Positives = 64/96 (65%)
Query: 2 VQKAHSFRRKTRKKLRKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHGR 61
++++ FR KTR KL+K R P+TR +Q F G VHI+I+PS H+G P PRFHG+
Sbjct: 1 MRRSRGFRSKTRHKLQKVKRPGRSNPITRKIQSFNEGDLVHIIIDPSIHRGQPHPRFHGK 60
Query: 62 TGTVVGKRGDAYIVEVPDGNKVKTLFIHPVHLRPQK 97
TG VVG G +Y+V + DGNK K L + P HL+ Q+
Sbjct: 61 TGRVVGMMGKSYVVALKDGNKDKQLVVRPEHLQMQE 96
>sp|P12734|RL21_HALMA 50S RIBOSOMAL PROTEIN L21E (HL31) >gi|71334|pir||R5HS31 ribosomal
protein L21.eR [validated] - Haloarcula marismortui
>gi|10120933|pdb|1FFK|N Chain N, Crystal Structure Of
The Large Ribosomal Subunit From Haloarcula Marismortui
At 2.4 Angstrom Resolution
Length = 95
Score = 90.5 bits (221), Expect = 5e-18
Identities = 43/86 (50%), Positives = 58/86 (67%)
Query: 12 TRKKLRKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGD 71
TR KL+ PR RG P R ++EF+ G++VH+ I+PS G PRF G+TGTV GK+GD
Sbjct: 10 TRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGD 69
Query: 72 AYIVEVPDGNKVKTLFIHPVHLRPQK 97
AY V++ DG K KT+ + HLR Q+
Sbjct: 70 AYKVDIVDGGKEKTIIVTAAHLRRQE 95
>gb|AAK41047.1| LSU ribosomal protein L21E (rpl21E) [Sulfolobus solfataricus]
Length = 101
Score = 88.9 bits (217), Expect = 1e-17
Identities = 41/96 (42%), Positives = 62/96 (63%), Gaps = 1/96 (1%)
Query: 1 MVQKAHSFRRKTRKKLRKHPRRRG-LPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFH 59
MV+ + +R ++R LRK PR RG +P L++ + E++ G V + I PS H+GMP R+
Sbjct: 1 MVKHSKGYRTRSRSLLRKSPRERGAVPSLSKLMVEYKEGDNVVVKINPSVHQGMPHRRYQ 60
Query: 60 GRTGTVVGKRGDAYIVEVPDGNKVKTLFIHPVHLRP 95
G+ G ++GKRG AY+V V G+K K + + P HL P
Sbjct: 61 GKVGKIIGKRGRAYLVSVTLGDKEKVIIVRPEHLVP 96
>emb|CAB57551.1| (Y18930) ribosomal protein L21E,A [Sulfolobus solfataricus]
Length = 101
Score = 88.9 bits (217), Expect = 1e-17
Identities = 41/96 (42%), Positives = 62/96 (63%), Gaps = 1/96 (1%)
Query: 1 MVQKAHSFRRKTRKKLRKHPRRRG-LPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFH 59
MV+ + +R ++R LRK PR RG +P L++ + E++ G V + I PS H+GMP R+
Sbjct: 1 MVKHSKGYRTRSRSLLRKSPRERGAVPSLSKLMVEYKEGDNVVVKINPSVHQGMPHRRYQ 60
Query: 60 GRTGTVVGKRGDAYIVEVPDGNKVKTLFIHPVHLRP 95
G+ G ++GKRG AY+V V G+K K + + P HL P
Sbjct: 61 GKVGKIIGKRGRAYLVSVTLGDKEKVIIVRPEHLVP 96
>emb|CAC12419.1| (AL445067) probable ribosomal protein L21E [Thermoplasma
acidophilum]
Length = 98
Score = 81.1 bits (197), Expect = 3e-15
Identities = 45/97 (46%), Positives = 55/97 (56%)
Query: 1 MVQKAHSFRRKTRKKLRKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHG 60
MV+ +H R +R+KL K R + RF+QEFE G RV I IEPS H GMP RF G
Sbjct: 1 MVKMSHGPRSGSRRKLTKSAEERKRSVIGRFMQEFEPGDRVAIDIEPSVHAGMPYHRFQG 60
Query: 61 RTGTVVGKRGDAYIVEVPDGNKVKTLFIHPVHLRPQK 97
TG V G +GD Y V V + K + PVHL+ K
Sbjct: 61 YTGVVEGPQGDCYKVAVKIDSLTKYVIASPVHLKKIK 97
>gb|AAG19547.1| (AE005045) 50S ribosomal protein L21E; Rpl21e [Halobacterium sp.
NRC-1]
Length = 99
Score = 80.8 bits (196), Expect = 4e-15
Identities = 39/83 (46%), Positives = 52/83 (61%)
Query: 15 KLRKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGDAYI 74
KL+ PR RG P R + +++ G+ VH+ ++PS G PRF G TGTVVG +GDA+
Sbjct: 14 KLQNDPRDRGTSPPQRAIADYDDGESVHLTLDPSVQDGRFHPRFSGLTGTVVGTQGDAFK 73
Query: 75 VEVPDGNKVKTLFIHPVHLRPQK 97
VEV DG KTL + HLR Q+
Sbjct: 74 VEVNDGGMDKTLIVGAAHLRTQR 96
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.143 0.441
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39325724
Number of Sequences: 2977
Number of extensions: 1612567
Number of successful extensions: 4929
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4915
Number of HSP's gapped (non-prelim): 11
length of query: 97
length of database: 189,106,746
effective HSP length: 47
effective length of query: 50
effective length of database: 160,977,857
effective search space: 8048892850
effective search space used: 8048892850
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.5 bits)
S2: 159 (66.3 bits)