BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0732 (PAB0732) DE:Hypothetical protein
(121 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75089 hypothetical protein PAB0732 - Pyrococcus abyssi (st... 240 5e-63
pir||H71053 hypothetical protein PH1127 - Pyrococcus horikoshii ... 215 2e-55
gi|11499125 conserved hypothetical protein [Archaeoglobus fulgid... 90 1e-17
pir||A69043 conserved hypothetical protein MTH1324 - Methanobact... 89 1e-17
sp|Q60351|Y039_METJA HYPOTHETICAL PROTEIN MJ0039 >gi|2128093|pir... 89 2e-17
gb|AAG19546.1| (AE005045) Vng1169c [Halobacterium sp. NRC-1] 72 2e-12
>pir||D75089 hypothetical protein PAB0732 - Pyrococcus abyssi (strain Orsay)
>gi|5458529|emb|CAB50017.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 121
Score = 240 bits (605), Expect = 5e-63
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MIGRKKLGEKYITIAEAKEILLKKYEEGKKAGIEEPLFYEARLALEHAEKFAKLSAEKAR 60
MIGRKKLGEKYITIAEAKEILLKKYEEGKKAGIEEPLFYEARLALEHAEKFAKLSAEKAR
Sbjct: 1 MIGRKKLGEKYITIAEAKEILLKKYEEGKKAGIEEPLFYEARLALEHAEKFAKLSAEKAR 60
Query: 61 EAVEELISAFDWMNDRIAGKIVDIMPEDNLDLRVIFAKEEYQPTQEEMKKILEILDKYRE 120
EAVEELISAFDWMNDRIAGKIVDIMPEDNLDLRVIFAKEEYQPTQEEMKKILEILDKYRE
Sbjct: 61 EAVEELISAFDWMNDRIAGKIVDIMPEDNLDLRVIFAKEEYQPTQEEMKKILEILDKYRE 120
Query: 121 T 121
T
Sbjct: 121 T 121
>pir||H71053 hypothetical protein PH1127 - Pyrococcus horikoshii
>gi|3257543|dbj|BAA30226.1| (AP000005) 121aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 121
Score = 215 bits (541), Expect = 2e-55
Identities = 106/120 (88%), Positives = 115/120 (95%)
Query: 1 MIGRKKLGEKYITIAEAKEILLKKYEEGKKAGIEEPLFYEARLALEHAEKFAKLSAEKAR 60
MIGRKKLGE+YITI+EAKEILLKKYEEG KAGIEEPLFYEARLALEHAEKFAKL AEKAR
Sbjct: 1 MIGRKKLGERYITISEAKEILLKKYEEGIKAGIEEPLFYEARLALEHAEKFAKLPAEKAR 60
Query: 61 EAVEELISAFDWMNDRIAGKIVDIMPEDNLDLRVIFAKEEYQPTQEEMKKILEILDKYRE 120
+A+EEL+S F+WMN+RIA K+VDIMPEDNLDLRVIFAKEE+QPT EEMKKILEILDKYRE
Sbjct: 61 KAIEELMSEFEWMNERIAAKLVDIMPEDNLDLRVIFAKEEHQPTPEEMKKILEILDKYRE 120
>gi|11499125 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7430190|pir||A69441 conserved hypothetical protein
AF1530 - Archaeoglobus fulgidus
>gi|2649034|gb|AAB89718.1| (AE000997) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 119
Score = 89.7 bits (219), Expect = 1e-17
Identities = 50/110 (45%), Positives = 72/110 (65%), Gaps = 3/110 (2%)
Query: 10 KYITIAEAKEILLKKYEEGKKAGIEEPLFYEARLALEHAEKFAKLSAEKAREAVEELISA 69
+YITI+EAKEI+ E KK E L +E R AL+H FAKL A+KA+E V+EL+
Sbjct: 12 EYITISEAKEIM---EEIAKKRQEEAELLFETRRALKHLRLFAKLPADKAKELVDELVKL 68
Query: 70 FDWMNDRIAGKIVDIMPEDNLDLRVIFAKEEYQPTQEEMKKILEILDKYR 119
+ IA K+ DIMP ++R+I+AKE T E++++IL+++DKYR
Sbjct: 69 PQVGSKEIAVKLADIMPRIPDEVRIIYAKERVTLTPEQIQEILDVIDKYR 118
>pir||A69043 conserved hypothetical protein MTH1324 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622430|gb|AAB85802.1| (AE000896) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 116
Score = 89.3 bits (218), Expect = 1e-17
Identities = 53/119 (44%), Positives = 74/119 (61%), Gaps = 8/119 (6%)
Query: 1 MIGRKKLGEKYITIAEAKEILLKKYEEGKKAGIEEPLFYEARLALEHAEKFAKLSAEKAR 60
MIG+K L + +++AE KEIL +K G + L YE L L+H +F++L EK+R
Sbjct: 4 MIGKKVLESEPVSMAEVKEIL-------EKFGEDHELTYEQNLVLDHVTRFSRLDPEKSR 56
Query: 61 EAVEELISAFDWMNDRIAGKIVDIMPEDNLDLRVIFAKEEYQPTQEEMKKILEILDKYR 119
E VEEL+ + + R A KI DIMP D DLR+IFAKE +++ ILE++DKYR
Sbjct: 57 ELVEELMDIPN-IKRRHAVKIADIMPVDISDLRLIFAKERVPIKADDLPGILEVIDKYR 114
>sp|Q60351|Y039_METJA HYPOTHETICAL PROTEIN MJ0039 >gi|2128093|pir||G64304 hypothetical
protein MJ0039 - Methanococcus jannaschii
>gi|1590840|gb|AAB98020.1| (U67462) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 115
Score = 88.9 bits (217), Expect = 2e-17
Identities = 54/118 (45%), Positives = 76/118 (63%), Gaps = 12/118 (10%)
Query: 1 MIGRKKLGEKYITIAEAKEILLKKYEEGKKAGIEEPLFYEARLALEHAEKFAKLSAEKAR 60
MIG+K LGE+Y+T++EA EI+ + + G+ L YE AL++ +KFAKL E+A+
Sbjct: 9 MIGKKILGERYVTVSEAAEIMYNRAQIGE-------LSYEQGCALDYLQKFAKLDKEEAK 61
Query: 61 EAVEELISAFDWMNDRIAGKIVDIMPEDNLDLRVIFAKEEYQPTQEEMKKILEILDKY 118
+ VEELIS ++++ A KI DI+PED DLR I+ K E EE ILEI+ KY
Sbjct: 62 KLVEELISL--GIDEKTAVKIADILPEDLDDLRAIYYKRELPENAEE---ILEIVRKY 114
>gb|AAG19546.1| (AE005045) Vng1169c [Halobacterium sp. NRC-1]
Length = 119
Score = 71.8 bits (173), Expect = 2e-12
Identities = 41/108 (37%), Positives = 68/108 (62%), Gaps = 3/108 (2%)
Query: 12 ITIAEAKEILLKKYEEGKKAGIEEPLFYEARLALEHAEKFAKLSAEKAREAVEELISAFD 71
+T++EAK LL + E + + L +E A+EHA +FA L ++RE V+EL+ A D
Sbjct: 13 LTVSEAKA-LLSEVETERALDEDRELRFELSRAIEHANRFALLEPAESREFVDELL-ALD 70
Query: 72 WMNDR-IAGKIVDIMPEDNLDLRVIFAKEEYQPTQEEMKKILEILDKY 118
++D +A KIVD++P +LR +FA E Y + +E+ +IL+++ KY
Sbjct: 71 VLDDEAVAYKIVDLLPRTRTELRSVFANERYAMSGDELDEILDVVAKY 118
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.135 0.361
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41189026
Number of Sequences: 2977
Number of extensions: 1511824
Number of successful extensions: 4759
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4750
Number of HSP's gapped (non-prelim): 6
length of query: 121
length of database: 189,106,746
effective HSP length: 58
effective length of query: 63
effective length of database: 154,394,500
effective search space: 9726853500
effective search space used: 9726853500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 160 (66.7 bits)