BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0734 1059227 1059547 107 !not a gene!
         (107 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71053 hypothetical protein PH1125 - Pyrococcus horikoshii ...   157  3e-38

>pir||F71053 hypothetical protein PH1125 - Pyrococcus horikoshii
           >gi|3257541|dbj|BAA30224.1| (AP000005) 113aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 113
           
 Score =  157 bits (393), Expect = 3e-38
 Identities = 85/107 (79%), Positives = 92/107 (85%)

Query: 1   MDSSLNPISIRVFLILSTLLLIFLSNFSLSFMLSSKAFLIASPTLSISPSQIPTSFIPEL 60
           MDSSLNPIS+RVFLILSTL LIFL + SLSF+LSS+A L+ASPT  ISPS  P SFIPEL
Sbjct: 7   MDSSLNPISVRVFLILSTLFLIFLKSLSLSFILSSRALLMASPTSLISPSHTPISFIPEL 66

Query: 61  VDLTSSLISLVLNSDKSSILSSPRRRISNSILTSLPKVAPLNFTGIT 107
           V L SSLISLVLNS+ SSILSSPRR ISNS  T+LPKVAPLNFTGIT
Sbjct: 67  VALISSLISLVLNSEISSILSSPRRSISNSSFTNLPKVAPLNFTGIT 113


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.134    0.348 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31778085
Number of Sequences: 2977
Number of extensions: 1039990
Number of successful extensions: 4296
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4295
Number of HSP's gapped (non-prelim): 1
length of query: 107
length of database: 189,106,746
effective HSP length: 59
effective length of query: 48
effective length of database: 153,796,013
effective search space: 7382208624
effective search space used: 7382208624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 159 (66.3 bits)