BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0735 (PAB0735) DE:Hypothetical protein
(252 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75089 hypothetical protein PAB0735 - Pyrococcus abyssi (st... 501 e-141
sp|O58851|PCRB_PYRHO PCRB PROTEIN HOMOLOG >gi|7450102|pir||E7105... 419 e-116
sp|O26652|PCRB_METTH PCRB PROTEIN HOMOLOG >gi|7450101|pir||A6917... 273 1e-72
pir||G72648 hypothetical protein APE0621 - Aeropyrum pernix (str... 219 3e-56
emb|CAC12124.1| (AL445066) conserved hypothetical protein [Therm... 211 6e-54
sp|Q58647|PCRB_METJA PCRB PROTEIN HOMOLOG >gi|2128749|pir||A6445... 207 9e-53
gb|AAK40599.1| Conserved hypothetical protein [Sulfolobus solfat... 195 5e-49
gi|11498015 conserved hypothetical protein [Archaeoglobus fulgid... 71 2e-11
>pir||G75089 hypothetical protein PAB0735 - Pyrococcus abyssi (strain Orsay)
>gi|5458532|emb|CAB50020.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 252
Score = 501 bits (1276), Expect = e-141
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MVKIGKVEMYINEELESGKKLHFVLIDPDDTHPEMAGRIAELCENVGVNAIMVGGSTGAE 60
MVKIGKVEMYINEELESGKKLHFVLIDPDDTHPEMAGRIAELCENVGVNAIMVGGSTGAE
Sbjct: 1 MVKIGKVEMYINEELESGKKLHFVLIDPDDTHPEMAGRIAELCENVGVNAIMVGGSTGAE 60
Query: 61 GEMLDNVVKAIKESSSLPVILFPGSHSGISKYADAIFFMSLLNSRNPFFITGAQALGAFT 120
GEMLDNVVKAIKESSSLPVILFPGSHSGISKYADAIFFMSLLNSRNPFFITGAQALGAFT
Sbjct: 61 GEMLDNVVKAIKESSSLPVILFPGSHSGISKYADAIFFMSLLNSRNPFFITGAQALGAFT 120
Query: 121 VKRYGLEPIPMAYIIVEPGETVGWVGDAKPIPRHKPKLAAAYALAGQYLGMRLVYLEAGS 180
VKRYGLEPIPMAYIIVEPGETVGWVGDAKPIPRHKPKLAAAYALAGQYLGMRLVYLEAGS
Sbjct: 121 VKRYGLEPIPMAYIIVEPGETVGWVGDAKPIPRHKPKLAAAYALAGQYLGMRLVYLEAGS 180
Query: 181 GSPEPVPPEMVRIVKSVIDVPLIVGGGIRTGDQVRELTKAGADIIVTGTAIESTKSIDEA 240
GSPEPVPPEMVRIVKSVIDVPLIVGGGIRTGDQVRELTKAGADIIVTGTAIESTKSIDEA
Sbjct: 181 GSPEPVPPEMVRIVKSVIDVPLIVGGGIRTGDQVRELTKAGADIIVTGTAIESTKSIDEA 240
Query: 241 KRKLEEIRRGLK 252
KRKLEEIRRGLK
Sbjct: 241 KRKLEEIRRGLK 252
>sp|O58851|PCRB_PYRHO PCRB PROTEIN HOMOLOG >gi|7450102|pir||E71053 hypothetical protein
PH1124 - Pyrococcus horikoshii
>gi|3257540|dbj|BAA30223.1| (AP000005) 254aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 254
Score = 419 bits (1066), Expect = e-116
Identities = 201/250 (80%), Positives = 236/250 (94%), Gaps = 1/250 (0%)
Query: 2 VKIGKVEMYINEELESGKKLHFVLIDPDDTHPEMAGRIAELCENVGVNAIMVGGSTGAEG 61
++IGKVE YI+E+LE KKLHFVLIDPDDT PE+AG++A +CE +GV+AIMVGGSTGAEG
Sbjct: 4 LRIGKVEKYIHEKLEK-KKLHFVLIDPDDTSPEVAGKLARVCEELGVDAIMVGGSTGAEG 62
Query: 62 EMLDNVVKAIKESSSLPVILFPGSHSGISKYADAIFFMSLLNSRNPFFITGAQALGAFTV 121
E+LDNVV++IK++SSLPVILFPGSH GIS+YADAIFFMSLLNSRNPFFITGAQALGAFTV
Sbjct: 63 EVLDNVVRSIKDNSSLPVILFPGSHGGISRYADAIFFMSLLNSRNPFFITGAQALGAFTV 122
Query: 122 KRYGLEPIPMAYIIVEPGETVGWVGDAKPIPRHKPKLAAAYALAGQYLGMRLVYLEAGSG 181
K++G+EPIPMAYI+VEPGETVGWVGDA+PIPRHKPKLAAAYALAGQYLGMRLVYLEAGSG
Sbjct: 123 KKFGIEPIPMAYIVVEPGETVGWVGDARPIPRHKPKLAAAYALAGQYLGMRLVYLEAGSG 182
Query: 182 SPEPVPPEMVRIVKSVIDVPLIVGGGIRTGDQVRELTKAGADIIVTGTAIESTKSIDEAK 241
+PEPVP EMVR+VKSVIDVPLIVGGGI++G+Q ++L K+GADIIVTGTAIE KS++EA+
Sbjct: 183 APEPVPEEMVRVVKSVIDVPLIVGGGIKSGEQAKKLIKSGADIIVTGTAIEKAKSLEEAR 242
Query: 242 RKLEEIRRGL 251
++LE IR G+
Sbjct: 243 KRLEAIRNGV 252
>sp|O26652|PCRB_METTH PCRB PROTEIN HOMOLOG >gi|7450101|pir||A69173 conserved hypothetical
protein MTH552 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621628|gb|AAB85058.1| (AE000838)
conserved protein [Methanobacterium thermoautotrophicum]
Length = 248
Score = 273 bits (692), Expect = 1e-72
Identities = 132/241 (54%), Positives = 180/241 (73%), Gaps = 2/241 (0%)
Query: 6 KVEMYINEELESGKKLHFVLIDPDDTHPEMAGRIAELCENVGVNAIMVGGSTGAEGEMLD 65
KVE Y ++ L +K+H LIDP++ PE A IA G + IM+GGST E LD
Sbjct: 5 KVEDYFHDILRE-RKIHLTLIDPEEQTPEEAVEIARAAIRGGTDGIMLGGSTTDSSE-LD 62
Query: 66 NVVKAIKESSSLPVILFPGSHSGISKYADAIFFMSLLNSRNPFFITGAQALGAFTVKRYG 125
N +A++E+ +P+ILFPG+ +G+S+YADAIFFMSLLNS NP++I GAQALGA TVK+ G
Sbjct: 63 NTARALRENIDVPIILFPGNTTGVSRYADAIFFMSLLNSTNPYWIIGAQALGAATVKKMG 122
Query: 126 LEPIPMAYIIVEPGETVGWVGDAKPIPRHKPKLAAAYALAGQYLGMRLVYLEAGSGSPEP 185
+E +PM Y++VEPG TVGWVGD KP+PR+KP +AAAYA+A ++LGMRL YLEAGSG+PE
Sbjct: 123 IEALPMGYLVVEPGGTVGWVGDTKPVPRNKPDIAAAYAMAAEFLGMRLFYLEAGSGAPEH 182
Query: 186 VPPEMVRIVKSVIDVPLIVGGGIRTGDQVRELTKAGADIIVTGTAIESTKSIDEAKRKLE 245
VP EM+ +VK D LIVGGGIR+G+ + AGAD++VTGT +E++ ++++ R++
Sbjct: 183 VPEEMIALVKRCTDQILIVGGGIRSGEDAARVAGAGADVVVTGTVVENSDNVEDKIREIV 242
Query: 246 E 246
E
Sbjct: 243 E 243
>pir||G72648 hypothetical protein APE0621 - Aeropyrum pernix (strain K1)
>gi|5104276|dbj|BAA79591.1| (AP000060) 257aa long
hypothetical protein [Aeropyrum pernix]
Length = 257
Score = 219 bits (552), Expect = 3e-56
Identities = 117/228 (51%), Positives = 150/228 (65%), Gaps = 8/228 (3%)
Query: 14 ELESGKKLHFVLIDPDDTHPEMAGRIAELCENVGVNAIMVGGSTGAEGEMLDNVVKAIKE 73
E S +LHF LIDPD T P AG IA G +AI+VGGS G E D VVKA K
Sbjct: 17 ERRSRGRLHFTLIDPDKTGPGEAGEIAARAAEAGSDAILVGGSIGVTFEETDGVVKAAKR 76
Query: 74 SSSLPVILFPGSHSGISKYADAIFFMSLLNSRNPFFITGAQALGAFTVKRYGLEPIPMAY 133
S LPVILFPG H+ S++ADA+ F++++NS NP++I AQ LGA + GLE IP +Y
Sbjct: 77 SG-LPVILFPGGHTNASRHADAVLFLTVMNSDNPYYIVQAQILGAPLALKLGLEAIPTSY 135
Query: 134 IIVEPGETVGWVGDAKPIPRHKPKLAAAYALAGQYLGMRLVYLEAGSGSPEPVPPEMVRI 193
IIV G G+V A+PIP KP+LAA +ALAG +G R++YLEAGSG+P+PVPPE V
Sbjct: 136 IIVGYGGAAGFVARARPIPYEKPELAALHALAGAMMGGRIIYLEAGSGAPKPVPPEAVAA 195
Query: 194 VKSVID-------VPLIVGGGIRTGDQVRELTKAGADIIVTGTAIEST 234
+ ++D V L VGGG+RT + R L +AGAD++VTGT E +
Sbjct: 196 SRKLVDAAGYGGEVLLTVGGGVRTPEAARMLAEAGADVLVTGTLAEES 243
>emb|CAC12124.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 253
Score = 211 bits (532), Expect = 6e-54
Identities = 114/227 (50%), Positives = 143/227 (62%)
Query: 20 KLHFVLIDPDDTHPEMAGRIAELCENVGVNAIMVGGSTGAEGEMLDNVVKAIKESSSLPV 79
K+H LIDP P+ RIAE E G + IMVGGST + +D + AIK + L V
Sbjct: 16 KVHMTLIDPGAKPPQECARIAEEAEMAGTDFIMVGGSTDIDSRAMDEAISAIKAKTDLKV 75
Query: 80 ILFPGSHSGISKYADAIFFMSLLNSRNPFFITGAQALGAFTVKRYGLEPIPMAYIIVEPG 139
I+FPGS IS ADAIFFMSLLNS + ++ G Q A + +E IPMAY++ +PG
Sbjct: 76 IIFPGSSLMISPKADAIFFMSLLNSGSLEYVVGHQVKAAIPLSAMKIEKIPMAYLVFDPG 135
Query: 140 ETVGWVGDAKPIPRHKPKLAAAYALAGQYLGMRLVYLEAGSGSPEPVPPEMVRIVKSVID 199
TVG VG A IPR K A +YALA QY G RLVY EAGSGSP V +VR VK +D
Sbjct: 136 MTVGRVGKAHLIPRDDEKTALSYALAAQYFGFRLVYFEAGSGSPYHVGENVVRRVKQELD 195
Query: 200 VPLIVGGGIRTGDQVRELTKAGADIIVTGTAIESTKSIDEAKRKLEE 246
+P+IVGGGIRT + + L +AGAD+IVTGT E + ++ EA + E
Sbjct: 196 IPVIVGGGIRTPEAAKALAQAGADMIVTGTIAERSVNVYEALHPIVE 242
>sp|Q58647|PCRB_METJA PCRB PROTEIN HOMOLOG >gi|2128749|pir||A64456 hypothetical protein
MJ1250 - Methanococcus jannaschii
>gi|1591883|gb|AAB99253.1| (U67565) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 253
Score = 207 bits (522), Expect = 9e-53
Identities = 109/235 (46%), Positives = 155/235 (65%), Gaps = 12/235 (5%)
Query: 2 VKIGKVEMYINEELESGKKLHFVLIDPDDTHPEMAGRIAELCENVG--VNAIMVGGSTGA 59
+KIGKVE +N+ +E ++ L+DP++ + I E+ ENV +AIMVGGS G
Sbjct: 3 IKIGKVEKRLNQIIEEEGAVYLTLLDPEEEN------IEEIAENVKDYADAIMVGGSIGI 56
Query: 60 EGEMLDNVVKAIKESSSLPVILFPGSHSGISKYADAIFFMSLLNSRNPFFITGAQALGAF 119
LD VK IK+ + LP+ILFPG+ G+S+YADA+F+MSL+NS N +++ A LGA
Sbjct: 57 VN--LDETVKKIKKITKLPIILFPGNVDGLSRYADAVFYMSLMNSANTYWVVTAPTLGAI 114
Query: 120 TVKRYGLEPIPMAYIIVEPGE--TVGWVGDAKPIPRHKPKLAAAYALAGQYLGMRLVYLE 177
T+ +Y LEPIPMAY+ +EP + VG+VG+ + IP++KPK+ A Y L+ ++ GMR YLE
Sbjct: 115 TILKYNLEPIPMAYLCIEPAKKTAVGYVGEIREIPQNKPKITAMYCLSAKFFGMRWAYLE 174
Query: 178 AGSGSPEPVPPEMVRIVKSVIDVPLIVGGGIRTGDQVRELTKAGADIIVTGTAIE 232
AGSG+ PV E + + K + + +IVGGGIR + E AGAD IVTG +E
Sbjct: 175 AGSGASYPVNNETIALSKKLSGINIIVGGGIRKPEIAYEKVLAGADAIVTGNLLE 229
>gb|AAK40599.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 255
Score = 195 bits (490), Expect = 5e-49
Identities = 109/249 (43%), Positives = 156/249 (61%), Gaps = 8/249 (3%)
Query: 5 GKVEMYINEELESGKKLHFVLIDPDDTHP-EMAGRIAELCENVGVNAIMVGGSTGAEGEM 63
GKV+ Y+ ++L +KLHF LIDP + + I + N G +A ++GG+ G +
Sbjct: 12 GKVKKYLIDKLNDNEKLHFSLIDPFKINSSDELKYITKNLYNAGTDAFLIGGTLGVSKDK 71
Query: 64 LDNVVKAIKESSSLPVILFPGSHSGISKYADAIFFMSLLNSRNPFFITGAQALGAFTVKR 123
LD V+ + + +P I+FP + + +S+ ADA+ FMSLLNS + ++I GAQ + A +K
Sbjct: 72 LDFVISLL-DDYEIPKIIFPSNINLLSEKADALLFMSLLNSDDIYYIIGAQIVAAPIIKM 130
Query: 124 YGLEPIPMAYIIVEPGETVGWVGDAKPIPRHKPKLAAAYALAGQYLGMRLVYLEAGSGSP 183
+E IP AY+IV G T +G A+ IP +LA AY LA +YLGM VYLEAGSG+P
Sbjct: 131 LQMEVIPTAYVIVGHGGTAAHIGKARVIPYDNFELATAYTLAAEYLGMSFVYLEAGSGAP 190
Query: 184 EPVPPEMVRIVKSVIDVPLIVGGGIRTGDQVRELTKAGADIIVTGTAIESTKSIDEAKRK 243
EP+ PEM+ +K+ +PLIVGGGIR+ + +L +AGADIIVTG IES + K
Sbjct: 191 EPIRPEMISFIKNASSIPLIVGGGIRSVEVALKLVEAGADIIVTGNIIESDVN------K 244
Query: 244 LEEIRRGLK 252
+I RG+K
Sbjct: 245 AIKIIRGIK 253
>gi|11498015 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7674148|sp|O29844|PCRB_ARCFU PCRB PROTEIN HOMOLOG
>gi|7448666|pir||C69300 conserved hypothetical protein
AF0403 - Archaeoglobus fulgidus
>gi|2650222|gb|AAB90827.1| (AE001076) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 231
Score = 70.6 bits (170), Expect = 2e-11
Identities = 67/229 (29%), Positives = 110/229 (47%), Gaps = 24/229 (10%)
Query: 22 HFVLIDPDDTHPEMAGRIAELCENVGVNAIMVGGSTGAEGEMLDNVVKAIKESSSLPVIL 81
H +DPD T+ + I + + G +A+M+ G+ E +++ + + LP+++
Sbjct: 8 HITKLDPDRTNTD---EIIKAVADSGTDAVMISGTQNVTYEKARTLIEKVSQYG-LPIVV 63
Query: 82 FPGSHSGISKYADAIFFMSLLNSRNPFFITGAQA---------LGAFTVKRYGLEPIPM- 131
P S + D +F ++LNS + +ITG A L FT + E I +
Sbjct: 64 EPSDPSNVVYDVDYLFVPTVLNSADGDWITGKHAQWVRMHYENLQKFT-EIIESEFIQIE 122
Query: 132 AYIIVEPGETVGWVGDAKPIPRHKPKLAAAYALAGQYL-GMRLVYLEAGSGSPEPVPPEM 190
YI++ P V V K + +LAA+YAL G+ L + ++Y+E PE+
Sbjct: 123 GYIVLNPDSAVARV--TKALCNIDKELAASYALVGEKLFNLPIIYIEYSGTYGN---PEL 177
Query: 191 VRIVKSVID-VPLIVGGGIRTGDQVRELTKAGADIIVTGTAIESTKSID 238
V VK V+D L GGGI + ++ RE+ + AD I+ G I K ID
Sbjct: 178 VAEVKKVLDKARLFYGGGIDSREKAREMLRY-ADTIIVGNVIYE-KGID 224
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.138 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94492178
Number of Sequences: 2977
Number of extensions: 4175389
Number of successful extensions: 12631
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12611
Number of HSP's gapped (non-prelim): 8
length of query: 252
length of database: 189,106,746
effective HSP length: 56
effective length of query: 196
effective length of database: 155,591,474
effective search space: 30495928904
effective search space used: 30495928904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)