BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0736 (PAB0736) DE:Hypothetical protein
         (197 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75090 hypothetical protein PAB0736 - Pyrococcus abyssi (st...   382  e-105
pir||C71053 hypothetical protein PH1122 - Pyrococcus horikoshii ...   282  2e-75

>pir||A75090 hypothetical protein PAB0736 - Pyrococcus abyssi (strain Orsay)
           >gi|5458534|emb|CAB50022.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 197
           
 Score =  382 bits (971), Expect = e-105
 Identities = 197/197 (100%), Positives = 197/197 (100%)

Query: 1   MALIEIIRRAKEAEEDALKEYKEILKELKSPEDAELKRVILRLAVDKIFHKELMEAIERA 60
           MALIEIIRRAKEAEEDALKEYKEILKELKSPEDAELKRVILRLAVDKIFHKELMEAIERA
Sbjct: 1   MALIEIIRRAKEAEEDALKEYKEILKELKSPEDAELKRVILRLAVDKIFHKELMEAIERA 60

Query: 61  YKEASKLLREHIDPYYPELEPIKNSIAQADEGLILIPGIPSLVIPTGTLGYKIPPEDILE 120
           YKEASKLLREHIDPYYPELEPIKNSIAQADEGLILIPGIPSLVIPTGTLGYKIPPEDILE
Sbjct: 61  YKEASKLLREHIDPYYPELEPIKNSIAQADEGLILIPGIPSLVIPTGTLGYKIPPEDILE 120

Query: 121 EILSTSPEVSIMPRDKAEKMQKEIEKLIREEREMEKSYESLEDLAKHPVIKDIARSLLYN 180
           EILSTSPEVSIMPRDKAEKMQKEIEKLIREEREMEKSYESLEDLAKHPVIKDIARSLLYN
Sbjct: 121 EILSTSPEVSIMPRDKAEKMQKEIEKLIREEREMEKSYESLEDLAKHPVIKDIARSLLYN 180

Query: 181 EAQHRAILKAISKKFKI 197
           EAQHRAILKAISKKFKI
Sbjct: 181 EAQHRAILKAISKKFKI 197


>pir||C71053 hypothetical protein PH1122 - Pyrococcus horikoshii
           >gi|3257538|dbj|BAA30221.1| (AP000005) 196aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 196
           
 Score =  282 bits (713), Expect = 2e-75
 Identities = 139/196 (70%), Positives = 170/196 (85%), Gaps = 1/196 (0%)

Query: 1   MALIEIIRRAKEAEEDALKEYKEILKELKSPEDAELKRVILRLAVDKIFHKELMEAIERA 60
           M LI+II+ AKEAEE ALKEYKE++KELKSPEDAELKR++LRLAVDKIFHKELMEAIERA
Sbjct: 1   MRLIDIIKSAKEAEERALKEYKEVIKELKSPEDAELKRILLRLAVDKIFHKELMEAIERA 60

Query: 61  YKEASKLLREHIDPYYPELEPIKNSIAQADEGLILIPGIPSLVIPTGTLGYKIPPEDILE 120
           YKE  KLLRE+++PYYPEL PI+ SIAQ D+GLILIPGIPSL++ +  LGYKIP ED+LE
Sbjct: 61  YKETLKLLRENLEPYYPELRPIRESIAQLDQGLILIPGIPSLLVSSTILGYKIPAEDVLE 120

Query: 121 EILSTSPEVSIMPRDKAEKMQKEIEKLIREEREMEKSYESLEDLAKHPVIKDIARSLLYN 180
           EILST PE  I P+D+ EK+++ IE++I  + +ME+ YE LE LAKHP+IK++ARSLLYN
Sbjct: 121 EILSTKPETFIPPKDR-EKVREVIERIINYQGKMEEDYERLESLAKHPIIKELARSLLYN 179

Query: 181 EAQHRAILKAISKKFK 196
           EAQHR ILK+ISK+ +
Sbjct: 180 EAQHRGILKSISKRLE 195


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.314    0.135    0.355 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67630468
Number of Sequences: 2977
Number of extensions: 2862453
Number of successful extensions: 16790
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16787
Number of HSP's gapped (non-prelim): 2
length of query: 197
length of database: 189,106,746
effective HSP length: 61
effective length of query: 136
effective length of database: 152,599,039
effective search space: 20753469304
effective search space used: 20753469304
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 162 (67.5 bits)