BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0737 (PAB0737) DE:Hypothetical protein
         (399 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75090 hypothetical protein PAB0737 - Pyrococcus abyssi (st...   800  0.0
pir||A71053 hypothetical protein PH1120 - Pyrococcus horikoshii ...   573  e-162

>pir||B75090 hypothetical protein PAB0737 - Pyrococcus abyssi (strain Orsay)
           >gi|5458535|emb|CAB50023.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 399
           
 Score =  800 bits (2043), Expect = 0.0
 Identities = 399/399 (100%), Positives = 399/399 (100%)

Query: 1   MKLKTNISTLDRALGGGFEKGCNIALVGGMDNDHIIFAHQLIEAFLSQGEKILLVELRQD 60
           MKLKTNISTLDRALGGGFEKGCNIALVGGMDNDHIIFAHQLIEAFLSQGEKILLVELRQD
Sbjct: 1   MKLKTNISTLDRALGGGFEKGCNIALVGGMDNDHIIFAHQLIEAFLSQGEKILLVELRQD 60

Query: 61  PMSLVKWLNKHEINYEDYIKSGHLKILDGFSNLYSPTNVVGPNVLPNPMDLGITSAIIRD 120
           PMSLVKWLNKHEINYEDYIKSGHLKILDGFSNLYSPTNVVGPNVLPNPMDLGITSAIIRD
Sbjct: 61  PMSLVKWLNKHEINYEDYIKSGHLKILDGFSNLYSPTNVVGPNVLPNPMDLGITSAIIRD 120

Query: 121 NVSKEPYDIVVFDDITTLYSLQTDYKAYIRVMIRLINSLKKFGVSTIIGVNADAFPIQDL 180
           NVSKEPYDIVVFDDITTLYSLQTDYKAYIRVMIRLINSLKKFGVSTIIGVNADAFPIQDL
Sbjct: 121 NVSKEPYDIVVFDDITTLYSLQTDYKAYIRVMIRLINSLKKFGVSTIIGVNADAFPIQDL 180

Query: 181 SMILMPFEYLLEVKNGVIKINRSFSFIRVNEFQYIKTNKGILPIEDVLKSTDHIRESLIL 240
           SMILMPFEYLLEVKNGVIKINRSFSFIRVNEFQYIKTNKGILPIEDVLKSTDHIRESLIL
Sbjct: 181 SMILMPFEYLLEVKNGVIKINRSFSFIRVNEFQYIKTNKGILPIEDVLKSTDHIRESLIL 240

Query: 241 TKDGKLMIGGERIQLISEQSERSLIEFVYQFLGSKEGKEFLYNWGRYEIRDVDFSRKITT 300
           TKDGKLMIGGERIQLISEQSERSLIEFVYQFLGSKEGKEFLYNWGRYEIRDVDFSRKITT
Sbjct: 241 TKDGKLMIGGERIQLISEQSERSLIEFVYQFLGSKEGKEFLYNWGRYEIRDVDFSRKITT 300

Query: 301 TEEIREILESMFETTKLMGGGILKIVEIDEDIIIVEGKNLFPKFENFPYPAHPHYAGSMS 360
           TEEIREILESMFETTKLMGGGILKIVEIDEDIIIVEGKNLFPKFENFPYPAHPHYAGSMS
Sbjct: 301 TEEIREILESMFETTKLMGGGILKIVEIDEDIIIVEGKNLFPKFENFPYPAHPHYAGSMS 360

Query: 361 KLLEKATGELWEGEEIKCEAQGSDKCVFVLRRVSTEKTV 399
           KLLEKATGELWEGEEIKCEAQGSDKCVFVLRRVSTEKTV
Sbjct: 361 KLLEKATGELWEGEEIKCEAQGSDKCVFVLRRVSTEKTV 399


>pir||A71053 hypothetical protein PH1120 - Pyrococcus horikoshii
           >gi|3257536|dbj|BAA30219.1| (AP000005) 397aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 397
           
 Score =  573 bits (1461), Expect = e-162
 Identities = 271/393 (68%), Positives = 328/393 (82%), Gaps = 1/393 (0%)

Query: 1   MKLKTNISTLDRALGGGFEKGCNIALVGGMDNDHIIFAHQLIEAFLSQGEKILLVELRQD 60
           MKLKT I  LDR LGGGFEKGCNIALVGGMDNDHI+  HQL  AFLS G+K+LLVELRQD
Sbjct: 6   MKLKTGIPALDRILGGGFEKGCNIALVGGMDNDHILLTHQLTNAFLSSGKKVLLVELRQD 65

Query: 61  PMSLVKWLNKHEINYEDYIKSGHLKILDGFSNLYSPTNVVGPNVLPNPMDLGITSAIIRD 120
           P SL+KWL+++ INYE+Y++ G LKILDGFSNLYSP ++ GP+VLPNP+DLGIT+AIIRD
Sbjct: 66  PASLIKWLSQYNINYEEYLEDGDLKILDGFSNLYSPASISGPDVLPNPLDLGITTAIIRD 125

Query: 121 NVSKEPYDIVVFDDITTLYSLQTDYKAYIRVMIRLINSLKKFGVSTIIGVNADAFPIQDL 180
           NVSKE YDI+VFDDIT+LY+LQTDYKAY+RV++RL NS++K G S+++ +N+D   IQDL
Sbjct: 126 NVSKEKYDILVFDDITSLYALQTDYKAYVRVIVRLTNSIRKLGASSLVAINSDVLSIQDL 185

Query: 181 SMILMPFEYLLEVKNGVIKINRSFSFIRVNEFQYIKTNKGILPIEDVLKSTDHIRESLIL 240
           SMILMPFEYL+E++ G+I+  RSFSFI V    Y+KTNKGI+PIEDVLK    IR+SL+L
Sbjct: 186 SMILMPFEYLIEIREGMIRFKRSFSFINVPGVPYVKTNKGIIPIEDVLKDAVSIRDSLVL 245

Query: 241 TKDGKLMIGGERIQLISEQSERSLIEFVYQFLGSKEGKEFLYNWGRYEIRDVDFSRKITT 300
           T DG L +G  R+QLI E SERSLIEFVY+FLG ++G+EFLY WGR+E+  ++   KI +
Sbjct: 246 TSDGVLKLGEGRVQLIGETSERSLIEFVYRFLGPEKGREFLYGWGRHEVEHLEIP-KIES 304

Query: 301 TEEIREILESMFETTKLMGGGILKIVEIDEDIIIVEGKNLFPKFENFPYPAHPHYAGSMS 360
            EEI+EILE  FE T+  GGGIL+IVE  +DIIIVEGKNLFP   NFPYPAH HYAG M+
Sbjct: 305 VEEIKEILEEAFEVTRSTGGGILRIVEATKDIIIVEGKNLFPHIRNFPYPAHVHYAGYMA 364

Query: 361 KLLEKATGELWEGEEIKCEAQGSDKCVFVLRRV 393
           KLLEKATGE WEGEEIKCE+Q +DKC+F+LRRV
Sbjct: 365 KLLEKATGERWEGEEIKCESQTNDKCIFILRRV 397


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.400 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144299927
Number of Sequences: 2977
Number of extensions: 6256390
Number of successful extensions: 15294
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15291
Number of HSP's gapped (non-prelim): 2
length of query: 399
length of database: 189,106,746
effective HSP length: 56
effective length of query: 343
effective length of database: 155,591,474
effective search space: 53367875582
effective search space used: 53367875582
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)