BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0743 (PAB0743) DE:Hypothetical protein
(117 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UZM5|Y743_PYRAB HYPOTHETICAL PROTEIN PAB0743 >gi|7517938|pi... 240 6e-63
sp|O58839|YB12_PYRHO HYPOTHETICAL PROTEIN PH1112 >gi|7518980|pir... 169 8e-42
sp|O27430|YD77_METTH HYPOTHETCIAL PROTEIN MTH1377 >gi|7482125|pi... 78 5e-14
pir||G64486 hypothetical protein MJ1496 - Methanococcus jannasch... 68 3e-11
sp|Q58891|YE96_METJA HYPOTHETICAL PROTEIN MJ1496 68 3e-11
>sp|Q9UZM5|Y743_PYRAB HYPOTHETICAL PROTEIN PAB0743 >gi|7517938|pir||C75091 hypothetical
protein PAB0743 - Pyrococcus abyssi (strain Orsay)
>gi|5458544|emb|CAB50032.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 117
Score = 240 bits (605), Expect = 6e-63
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MGVIINESKSVKWEGKVEIADNFIKRAFGFMLRNPGHALIFILPFETRFNATIHGFFMLK 60
MGVIINESKSVKWEGKVEIADNFIKRAFGFMLRNPGHALIFILPFETRFNATIHGFFMLK
Sbjct: 1 MGVIINESKSVKWEGKVEIADNFIKRAFGFMLRNPGHALIFILPFETRFNATIHGFFMLK 60
Query: 61 SIDVIFLDSEKTVVDVTTLRPWRIYVPKKAAKYVIEGPVGLRKVLKVEVGDKVEWIT 117
SIDVIFLDSEKTVVDVTTLRPWRIYVPKKAAKYVIEGPVGLRKVLKVEVGDKVEWIT
Sbjct: 61 SIDVIFLDSEKTVVDVTTLRPWRIYVPKKAAKYVIEGPVGLRKVLKVEVGDKVEWIT 117
>sp|O58839|YB12_PYRHO HYPOTHETICAL PROTEIN PH1112 >gi|7518980|pir||A71052 hypothetical
protein PH1112 - Pyrococcus horikoshii
>gi|3257528|dbj|BAA30211.1| (AP000005) 115aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 115
Score = 169 bits (425), Expect = 8e-42
Identities = 76/115 (66%), Positives = 96/115 (83%)
Query: 3 VIINESKSVKWEGKVEIADNFIKRAFGFMLRNPGHALIFILPFETRFNATIHGFFMLKSI 62
+I+NESK++ WEG+V IAD+FIKRA G M + P +AL+FILP ETR NA+IHGFFML+SI
Sbjct: 1 MIVNESKNLSWEGEVRIADSFIKRALGLMFKKPRYALVFILPLETRINASIHGFFMLESI 60
Query: 63 DVIFLDSEKTVVDVTTLRPWRIYVPKKAAKYVIEGPVGLRKVLKVEVGDKVEWIT 117
DVIFLDS VVDVTTL+PWRIY+PK A+Y+IEGP GL++ +K E GDK++W T
Sbjct: 61 DVIFLDSNFRVVDVTTLKPWRIYIPKARARYIIEGPRGLKESIKPEFGDKIKWFT 115
>sp|O27430|YD77_METTH HYPOTHETCIAL PROTEIN MTH1377 >gi|7482125|pir||B69050 conserved
hypothetical protein MTH1377 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622487|gb|AAB85854.1| (AE000901) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 123
Score = 77.6 bits (188), Expect = 5e-14
Identities = 46/114 (40%), Positives = 65/114 (56%), Gaps = 3/114 (2%)
Query: 4 IINESKSVKWEGKVEIADNFIKRAFGFMLRNPGHA-LIFILPF-ETRFNATIHGFFMLKS 61
+IN+++ G V A F+ R G MLR L+ +P R+ + IH FFML
Sbjct: 6 VINKTRGTSL-GAVRFARTFMSRFRGLMLRRDVETGLVLEIPVGRGRYGSGIHMFFMLVP 64
Query: 62 IDVIFLDSEKTVVDVTTLRPWRIYVPKKAAKYVIEGPVGLRKVLKVEVGDKVEW 115
+DV+F+D + VVD TLRPW+IY P+K A+YVIE G + VGD +E+
Sbjct: 65 LDVLFVDGDMRVVDSVTLRPWQIYNPRKPARYVIELREGKIRDSGTRVGDTIEF 118
>pir||G64486 hypothetical protein MJ1496 - Methanococcus jannaschii
>gi|1592132|gb|AAB99507.1| (U67590) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 117
Score = 68.3 bits (164), Expect = 3e-11
Identities = 44/116 (37%), Positives = 68/116 (57%), Gaps = 12/116 (10%)
Query: 5 INESKSVKWEGKVEIADNFIKRAFGFMLRNPG-HALIFILPFETRFNATIHGFFMLKSID 63
I + K E +V +ADNFIKRAFG MLR+ G A++F+ R +H FFML ID
Sbjct: 9 IKKVKVGNLEFEVVLADNFIKRAFGLMLRDIGDKAMLFLY---KRRKIAMHTFFMLYPID 65
Query: 64 VIFLDSEKTVVDVTTLRPWRIYVPKKAAKYVIE---GPVGLRKVLKVEVGDKVEWI 116
+IF+D + VV+ L+PW+ Y K + ++E + L ++ +G+KVE++
Sbjct: 66 IIFIDKNR-VVEAVRLKPWKTYKCKNYSTAMLEFKCSDIDLNEI----IGEKVEFM 116
>sp|Q58891|YE96_METJA HYPOTHETICAL PROTEIN MJ1496
Length = 114
Score = 68.3 bits (164), Expect = 3e-11
Identities = 44/116 (37%), Positives = 68/116 (57%), Gaps = 12/116 (10%)
Query: 5 INESKSVKWEGKVEIADNFIKRAFGFMLRNPG-HALIFILPFETRFNATIHGFFMLKSID 63
I + K E +V +ADNFIKRAFG MLR+ G A++F+ R +H FFML ID
Sbjct: 6 IKKVKVGNLEFEVVLADNFIKRAFGLMLRDIGDKAMLFLY---KRRKIAMHTFFMLYPID 62
Query: 64 VIFLDSEKTVVDVTTLRPWRIYVPKKAAKYVIE---GPVGLRKVLKVEVGDKVEWI 116
+IF+D + VV+ L+PW+ Y K + ++E + L ++ +G+KVE++
Sbjct: 63 IIFIDKNR-VVEAVRLKPWKTYKCKNYSTAMLEFKCSDIDLNEI----IGEKVEFM 113
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.143 0.434
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42060718
Number of Sequences: 2977
Number of extensions: 1460385
Number of successful extensions: 3587
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3580
Number of HSP's gapped (non-prelim): 5
length of query: 117
length of database: 189,106,746
effective HSP length: 48
effective length of query: 69
effective length of database: 160,379,370
effective search space: 11066176530
effective search space used: 11066176530
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 160 (66.7 bits)