BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0747 (PAB0747) DE:Hypothetical protein
         (140 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75092 hypothetical protein PAB0747 - Pyrococcus abyssi (st...   277  3e-74
pir||A71051 hypothetical protein PH1104 - Pyrococcus horikoshii ...   192  1e-48

>pir||C75092 hypothetical protein PAB0747 - Pyrococcus abyssi (strain Orsay)
           >gi|5458552|emb|CAB50040.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 140
           
 Score =  277 bits (702), Expect = 3e-74
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MSPSEYQFIKPADFVVMALGLFMYYEFLKTGFEVFTYKKPSKLYLFTVSLISMGLTLFLG 60
           MSPSEYQFIKPADFVVMALGLFMYYEFLKTGFEVFTYKKPSKLYLFTVSLISMGLTLFLG
Sbjct: 1   MSPSEYQFIKPADFVVMALGLFMYYEFLKTGFEVFTYKKPSKLYLFTVSLISMGLTLFLG 60

Query: 61  VLPGILVTLLAVLLTGVNIVETLIITLTAEFGFIIGFFTLYFIFTTVGTILGIEGLKLNL 120
           VLPGILVTLLAVLLTGVNIVETLIITLTAEFGFIIGFFTLYFIFTTVGTILGIEGLKLNL
Sbjct: 61  VLPGILVTLLAVLLTGVNIVETLIITLTAEFGFIIGFFTLYFIFTTVGTILGIEGLKLNL 120

Query: 121 DWDELLHYASLKMDTILVNS 140
           DWDELLHYASLKMDTILVNS
Sbjct: 121 DWDELLHYASLKMDTILVNS 140


>pir||A71051 hypothetical protein PH1104 - Pyrococcus horikoshii
           >gi|3257520|dbj|BAA30203.1| (AP000005) 143aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 143
           
 Score =  192 bits (484), Expect = 1e-48
 Identities = 94/138 (68%), Positives = 109/138 (78%)

Query: 1   MSPSEYQFIKPADFVVMALGLFMYYEFLKTGFEVFTYKKPSKLYLFTVSLISMGLTLFLG 60
           M+P E QFI PADF+VM LGL +YYE LK  FEVFTYKKPSKLYL  VS +SM LTLF+ 
Sbjct: 2   MNPLESQFIAPADFLVMLLGLLIYYELLKVCFEVFTYKKPSKLYLLLVSAVSMTLTLFVN 61

Query: 61  VLPGILVTLLAVLLTGVNIVETLIITLTAEFGFIIGFFTLYFIFTTVGTILGIEGLKLNL 120
           VL  I+ T  AV + G+N+ +T IIT T EFGFI+GFFTLYFIFTT+GTI+GIEGLKLNL
Sbjct: 62  VLLAIIFTAFAVAVKGINLKDTFIITATTEFGFILGFFTLYFIFTTIGTIIGIEGLKLNL 121

Query: 121 DWDELLHYASLKMDTILV 138
           DWDELLHYA  K+   L+
Sbjct: 122 DWDELLHYAMSKLTLKLI 139


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.148    0.429 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46927917
Number of Sequences: 2977
Number of extensions: 1801750
Number of successful extensions: 7714
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7712
Number of HSP's gapped (non-prelim): 2
length of query: 140
length of database: 189,106,746
effective HSP length: 50
effective length of query: 90
effective length of database: 159,182,396
effective search space: 14326415640
effective search space used: 14326415640
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 161 (67.1 bits)