BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0749 (rps8E) DE:SSU ribosomal protein S8E (rps8E)
         (127 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75092 ssu ribosomal protein s8e (rps8e) PAB0749 - Pyrococc...   250  4e-66
sp|O58830|RS8E_PYRHO 30S RIBOSOMAL PROTEIN S8E >gi|7440239|pir||...   247  4e-65
sp|P54055|RS8E_METJA 30S RIBOSOMAL PROTEIN S8E >gi|2129274|pir||...   152  2e-36
sp|O26309|RS8E_METTH 30S RIBOSOMAL PROTEIN S8E >gi|7440241|pir||...   142  1e-33
gi|11499735 SSU ribosomal protein S8E (rps8E) [Archaeoglobus ful...   142  1e-33
emb|CAC12168.1| (AL445066) probable 30S ribosomal protein S8 [Th...   134  4e-31
sp|Q9YDY0|RS8E_AERPE 30S RIBOSOMAL PROTEIN S8E >gi|7440243|pir||...   126  1e-28
gb|AAK40509.1| LSU ribosomal protein S8E (rps8E) [Sulfolobus sol...   113  6e-25
sp|P49402|RS8E_HALMA 30S RIBOSOMAL PROTEIN S8E (HS23) >gi|629389...   106  8e-23
gb|AAG19920.1| (AE005076) 30S ribosomal protein S8E; Rps8e [Halo...   103  7e-22
sp|O14049|RS8_SCHPO 40S RIBOSOMAL PROTEIN S8 >gi|7489959|pir||T3...    70  8e-12
emb|CAB86469.1| (AL163481) 40s ribosomal protein s8 [Schizosacch...    70  8e-12
gi|6319399 Ribosomal protein S8A (S14A) (rp19) (YS9); Rps8ap [Sa...    67  7e-11

>pir||F75092 ssu ribosomal protein s8e (rps8e) PAB0749 - Pyrococcus abyssi
           (strain Orsay) >gi|5458555|emb|CAB50043.1| (AJ248286)
           SSU ribosomal protein S8E (rps8E) [Pyrococcus abyssi]
           Length = 127
           
 Score =  250 bits (632), Expect = 4e-66
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAA 60
           MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAA
Sbjct: 1   MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAA 60

Query: 61  AYANVFDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVV 120
           AYANVFDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVV
Sbjct: 61  AYANVFDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVV 120

Query: 121 NAILLEE 127
           NAILLEE
Sbjct: 121 NAILLEE 127


>sp|O58830|RS8E_PYRHO 30S RIBOSOMAL PROTEIN S8E >gi|7440239|pir||H71050 probable
           ribosomal protein S8 - Pyrococcus horikoshii
           >gi|3257519|dbj|BAA30202.1| (AP000005) 127aa long
           hypothetical 30S ribosomal protein S8 [Pyrococcus
           horikoshii]
           Length = 127
           
 Score =  247 bits (624), Expect = 4e-65
 Identities = 124/127 (97%), Positives = 127/127 (99%)

Query: 1   MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAA 60
           MAIWQGRSL+KPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGN+KVRLTAA
Sbjct: 1   MAIWQGRSLKKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAA 60

Query: 61  AYANVFDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVV 120
           AYANVFDKSGKGRKVRIIRV+ENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVV
Sbjct: 61  AYANVFDKSGKGRKVRIIRVLENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVV 120

Query: 121 NAILLEE 127
           NAILLEE
Sbjct: 121 NAILLEE 127


>sp|P54055|RS8E_METJA 30S RIBOSOMAL PROTEIN S8E >gi|2129274|pir||A64384 ribosomal protein
           S8.eR - Methanococcus jannaschii
           >gi|1591387|gb|AAB98667.1| (U67514) SSU ribosomal
           protein S8E [Methanococcus jannaschii]
           Length = 129
           
 Score =  152 bits (379), Expect = 2e-36
 Identities = 81/129 (62%), Positives = 98/129 (75%), Gaps = 2/129 (1%)

Query: 1   MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQD-KRKIIRTYGGNKKVRLTA 59
           M++WQGRS RKP+GG    ARKKRK E+GREP  T VAE+  K K +RT GGN KV++  
Sbjct: 1   MSVWQGRSRRKPTGGLYRPARKKRKYEMGREPIETHVAEEAFKIKKVRTRGGNLKVKVVR 60

Query: 60  AAYANVFD-KSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDG 118
             +ANV D ++G  +KV+II V EN AN  + RRN+ITKGAIIETEIG AKVTSRPGQDG
Sbjct: 61  TGFANVLDPETGTCKKVKIITVRENKANIHYVRRNVITKGAIIETEIGLAKVTSRPGQDG 120

Query: 119 VVNAILLEE 127
            VNAIL++E
Sbjct: 121 TVNAILIKE 129


>sp|O26309|RS8E_METTH 30S RIBOSOMAL PROTEIN S8E >gi|7440241|pir||D69125 ribosomal protein
           S8 - Methanobacterium thermoautotrophicum  (strain Delta
           H) >gi|2621252|gb|AAB84713.1| (AE000807) ribosomal
           protein S8 [Methanobacterium thermoautotrophicum]
           Length = 127
           
 Score =  142 bits (355), Expect = 1e-33
 Identities = 71/128 (55%), Positives = 93/128 (72%), Gaps = 2/128 (1%)

Query: 1   MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAA 60
           MAIWQG+S++KPSGGR  + R KRK ELGREP+ T++ ++  R +IRT GGN KVRL + 
Sbjct: 1   MAIWQGKSMKKPSGGRAKMNRGKRKYELGREPAETKIGDRRVR-LIRTRGGNTKVRLASD 59

Query: 61  AYANVFD-KSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGV 119
              NV D ++GK     I  V+EN AN  F RRNIIT+GA++ET +G  +VTSRPGQDGV
Sbjct: 60  TRINVVDPETGKVEIAEIRNVVENTANPHFVRRNIITRGAVVETNLGNVRVTSRPGQDGV 119

Query: 120 VNAILLEE 127
           +N +L+ E
Sbjct: 120 INGVLIRE 127


>gi|11499735 SSU ribosomal protein S8E (rps8E) [Archaeoglobus fulgidus]
           >gi|3914931|sp|O28130|RS8E_ARCFU 30S RIBOSOMAL PROTEIN
           S8E >gi|7440240|pir||H69518 SSU ribosomal protein S8E
           (rps8E) homolog - Archaeoglobus fulgidus
           >gi|2648378|gb|AAB89103.1| (AE000956) SSU ribosomal
           protein S8E (rps8E) [Archaeoglobus fulgidus]
           Length = 125
           
 Score =  142 bits (355), Expect = 1e-33
 Identities = 77/125 (61%), Positives = 93/125 (73%), Gaps = 2/125 (1%)

Query: 3   IWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAAAY 62
           IWQGRS RKPSGG    ARKKRK ELGRE   T + E+  +KI R  GGN K++L A  Y
Sbjct: 2   IWQGRSRRKPSGGFYRKARKKRKYELGREQVETLIGERKVKKI-RVRGGNYKLKLFADKY 60

Query: 63  ANVFD-KSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVVN 121
           ANV+D K GK  +V I  V+ENPA+  +ARRN+ITKGAII T IGKA+VT+RP Q+GVVN
Sbjct: 61  ANVYDPKQGKVVRVEIESVVENPAHVHYARRNVITKGAIIATSIGKARVTNRPSQEGVVN 120

Query: 122 AILLE 126
           A+L+E
Sbjct: 121 AVLIE 125


>emb|CAC12168.1| (AL445066) probable 30S ribosomal protein S8 [Thermoplasma
           acidophilum]
           Length = 127
           
 Score =  134 bits (334), Expect = 4e-31
 Identities = 71/127 (55%), Positives = 92/127 (71%), Gaps = 1/127 (0%)

Query: 1   MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAA 60
           M I+QG+S +K +GG +  +RKKR+ ELGREP+ T++  + +RK+IRT GGN KV L  A
Sbjct: 1   MTIFQGKSGKKATGGSLKQSRKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTA 60

Query: 61  AYANVFDKSGKG-RKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGV 119
             ANV+D S K  +K +II V  NPAN  + +RNII KG +I TEIG A VTSRPGQDGV
Sbjct: 61  ETANVYDASEKKIKKAKIITVKANPANSHYVQRNIINKGTVIATEIGDAVVTSRPGQDGV 120

Query: 120 VNAILLE 126
           +NA LL+
Sbjct: 121 INAKLLK 127


>sp|Q9YDY0|RS8E_AERPE 30S RIBOSOMAL PROTEIN S8E >gi|7440243|pir||G72670 probable
           ribosomal protein S8 APE0789 - Aeropyrum pernix  (strain
           K1) >gi|5104452|dbj|BAA79767.1| (AP000060) 136aa long
           hypothetical 30S ribosomal protein S8 [Aeropyrum pernix]
           Length = 136
           
 Score =  126 bits (313), Expect = 1e-28
 Identities = 67/131 (51%), Positives = 95/131 (72%), Gaps = 4/131 (3%)

Query: 1   MAIWQGRSLRKPSGG-RIVLARKKRKRELGREPSNTRV--AEQDKRKIIRTYGGNKKVRL 57
           M I+Q R  +KPSGG R    + KRK   GR P+ T +  AE+++RK +R  GG+ K++ 
Sbjct: 1   MGIYQWRDKKKPSGGKRRYYYKVKRKYAAGRPPTYTTLSAAEEEERKPVRARGGSYKIKA 60

Query: 58  TAAAYANVFD-KSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQ 116
              A+A V + K+G+ RK RI+R++E PA+R++ARR II KGA+I+T +G+A VTSRPGQ
Sbjct: 61  KKVAFAVVSNPKTGEARKARILRIVETPAHREYARRGIIVKGAVIDTTLGRAVVTSRPGQ 120

Query: 117 DGVVNAILLEE 127
           +GVVNA+LLEE
Sbjct: 121 EGVVNAVLLEE 131


>gb|AAK40509.1| LSU ribosomal protein S8E (rps8E) [Sulfolobus solfataricus]
           Length = 133
           
 Score =  113 bits (281), Expect = 6e-25
 Identities = 63/127 (49%), Positives = 82/127 (63%), Gaps = 1/127 (0%)

Query: 1   MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAA 60
           M  +QG   RK +GG     R KRK E+G  P+ T ++ +D R   RT GGN KVRL   
Sbjct: 1   MGFYQGPDNRKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYT 60

Query: 61  AYANVFDKS-GKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGV 119
             ANV D +    +KV+I+ ++E PAN++ ARR II +GA I TE G A VTSRPGQDGV
Sbjct: 61  TTANVLDPATNTAKKVKILEILETPANKELARRGIIIRGAKIRTEAGLAVVTSRPGQDGV 120

Query: 120 VNAILLE 126
           +NA+LL+
Sbjct: 121 INAVLLK 127


>sp|P49402|RS8E_HALMA 30S RIBOSOMAL PROTEIN S8E (HS23) >gi|629389|pir||S49022 ribosomal
           protein S8.eR [validated] - Haloarcula marismortui
           Length = 123
           
 Score =  106 bits (263), Expect = 8e-23
 Identities = 60/122 (49%), Positives = 81/122 (66%), Gaps = 2/122 (1%)

Query: 5   QGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAAAYAN 64
           QGRS RK +GGR     KK+K ELG++   T+V EQ + K + + G  +KVR      A+
Sbjct: 4   QGRSPRKRTGGRRRPNHKKKKHELGKDTVETQVGEQ-RLKTVDSRGNTQKVRAVKTDVAS 62

Query: 65  VFDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVVNAIL 124
           + D   +  +  I  V+ENP+N  +ARRNIITKGAI+ET  G+A+VTSRPGQ G VNA+L
Sbjct: 63  IAD-GAETIEATIENVVENPSNPNYARRNIITKGAILETSEGQARVTSRPGQHGQVNAVL 121

Query: 125 LE 126
           +E
Sbjct: 122 VE 123


>gb|AAG19920.1| (AE005076) 30S ribosomal protein S8E; Rps8e [Halobacterium sp.
           NRC-1]
           Length = 124
           
 Score =  103 bits (255), Expect = 7e-22
 Identities = 62/124 (50%), Positives = 77/124 (62%), Gaps = 2/124 (1%)

Query: 4   WQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAAAYA 63
           +QGRS R  +G R+    KK K ELGREP+ T V E  + + +   G  +KVR+ +    
Sbjct: 3   YQGRSKRSKTGARLRPRSKKSKSELGREPTETTVGEP-RFRTVDVRGDAEKVRVLSTNVV 61

Query: 64  NVFDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVVNAI 123
           NV   SG  R   I  V  N AN  +ARRNIITKGAIIET+ G A+VTSRPGQDG VNA 
Sbjct: 62  NVATDSGAERAT-IEDVSANDANPNYARRNIITKGAIIETDAGTARVTSRPGQDGQVNAT 120

Query: 124 LLEE 127
            ++E
Sbjct: 121 RVDE 124


>sp|O14049|RS8_SCHPO 40S RIBOSOMAL PROTEIN S8 >gi|7489959|pir||T38527 40s ribosomal
           protein - fission yeast (Schizosaccharomyces pombe)
           >gi|2414627|emb|CAB16376.1| (Z99259) 40s ribosomal
           protein s8. [Schizosaccharomyces pombe]
           Length = 200
           
 Score = 70.2 bits (169), Expect = 8e-12
 Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 2/105 (1%)

Query: 7   RSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAAAYANV- 65
           R  R  +G +    RKKRK ELGR+PSNTR+  +   + +R  GGNKK R       N  
Sbjct: 8   RHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHE-VRVRGGNKKFRALRLDSGNFS 66

Query: 66  FDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKV 110
           +   G  +K RII+V  +P+N +  R N +TK AI++ +    +V
Sbjct: 67  WGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRV 111


>emb|CAB86469.1| (AL163481) 40s ribosomal protein s8 [Schizosaccharomyces pombe]
           Length = 200
           
 Score = 70.2 bits (169), Expect = 8e-12
 Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 2/105 (1%)

Query: 7   RSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAAAYANV- 65
           R  R  +G +    RKKRK ELGR+PSNTR+  +   + +R  GGNKK R       N  
Sbjct: 8   RHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHE-VRVRGGNKKFRALRLDSGNFS 66

Query: 66  FDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKV 110
           +   G  +K RII+V  +P+N +  R N +TK AI++ +    +V
Sbjct: 67  WGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRV 111


>gi|6319399 Ribosomal protein S8A (S14A) (rp19) (YS9); Rps8ap [Saccharomyces
           cerevisiae] >gi|6320949|ref|NP_011028.1| Ribosomal
           protein S8B (S14B) (rp19) (YS9); Rps8bp [Saccharomyces
           cerevisiae] >gi|464725|sp|P05754|RS8_YEAST 40S RIBOSOMAL
           PROTEIN S8 (S14) (YS9) (RP19) >gi|625512|pir||S45591
           ribosomal protein S8.e, cytosolic - yeast (Saccharomyces
           cerevisiae) >gi|407523|emb|CAA81525.1| (Z26879)
           ribosomal protein S8 [Saccharomyces cerevisiae]
           >gi|536115|emb|CAA84893.1| (Z35833) ORF YBL072c
           [Saccharomyces cerevisiae] >gi|603340|gb|AAB64657.1|
           (U18839) Rps8bp: Ribosome protein, small subunit
           [Saccharomyces cerevisiae]
           Length = 200
           
 Score = 67.1 bits (161), Expect = 7e-11
 Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 2/99 (2%)

Query: 7   RSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAAAYANV- 65
           R  R  +G +    RKKRK ELGR+P+NT++  + +   +RT GGNKK R       N  
Sbjct: 8   RHKRSATGAKRAQFRKKRKFELGRQPANTKIGAK-RIHSVRTRGGNKKYRALRIETGNFS 66

Query: 66  FDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETE 104
           +   G  +K RI  V+ +P+N +  R N +TK AI++ +
Sbjct: 67  WASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQID 105


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.135    0.371 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44021716
Number of Sequences: 2977
Number of extensions: 1590132
Number of successful extensions: 4368
Number of sequences better than 1.0e-10: 13
Number of HSP's better than  0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4339
Number of HSP's gapped (non-prelim): 16
length of query: 127
length of database: 189,106,746
effective HSP length: 56
effective length of query: 71
effective length of database: 155,591,474
effective search space: 11046994654
effective search space used: 11046994654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 160 (66.7 bits)