BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0749 (rps8E) DE:SSU ribosomal protein S8E (rps8E)
(127 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75092 ssu ribosomal protein s8e (rps8e) PAB0749 - Pyrococc... 250 4e-66
sp|O58830|RS8E_PYRHO 30S RIBOSOMAL PROTEIN S8E >gi|7440239|pir||... 247 4e-65
sp|P54055|RS8E_METJA 30S RIBOSOMAL PROTEIN S8E >gi|2129274|pir||... 152 2e-36
sp|O26309|RS8E_METTH 30S RIBOSOMAL PROTEIN S8E >gi|7440241|pir||... 142 1e-33
gi|11499735 SSU ribosomal protein S8E (rps8E) [Archaeoglobus ful... 142 1e-33
emb|CAC12168.1| (AL445066) probable 30S ribosomal protein S8 [Th... 134 4e-31
sp|Q9YDY0|RS8E_AERPE 30S RIBOSOMAL PROTEIN S8E >gi|7440243|pir||... 126 1e-28
gb|AAK40509.1| LSU ribosomal protein S8E (rps8E) [Sulfolobus sol... 113 6e-25
sp|P49402|RS8E_HALMA 30S RIBOSOMAL PROTEIN S8E (HS23) >gi|629389... 106 8e-23
gb|AAG19920.1| (AE005076) 30S ribosomal protein S8E; Rps8e [Halo... 103 7e-22
sp|O14049|RS8_SCHPO 40S RIBOSOMAL PROTEIN S8 >gi|7489959|pir||T3... 70 8e-12
emb|CAB86469.1| (AL163481) 40s ribosomal protein s8 [Schizosacch... 70 8e-12
gi|6319399 Ribosomal protein S8A (S14A) (rp19) (YS9); Rps8ap [Sa... 67 7e-11
>pir||F75092 ssu ribosomal protein s8e (rps8e) PAB0749 - Pyrococcus abyssi
(strain Orsay) >gi|5458555|emb|CAB50043.1| (AJ248286)
SSU ribosomal protein S8E (rps8E) [Pyrococcus abyssi]
Length = 127
Score = 250 bits (632), Expect = 4e-66
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAA 60
MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAA
Sbjct: 1 MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAA 60
Query: 61 AYANVFDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVV 120
AYANVFDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVV
Sbjct: 61 AYANVFDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVV 120
Query: 121 NAILLEE 127
NAILLEE
Sbjct: 121 NAILLEE 127
>sp|O58830|RS8E_PYRHO 30S RIBOSOMAL PROTEIN S8E >gi|7440239|pir||H71050 probable
ribosomal protein S8 - Pyrococcus horikoshii
>gi|3257519|dbj|BAA30202.1| (AP000005) 127aa long
hypothetical 30S ribosomal protein S8 [Pyrococcus
horikoshii]
Length = 127
Score = 247 bits (624), Expect = 4e-65
Identities = 124/127 (97%), Positives = 127/127 (99%)
Query: 1 MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAA 60
MAIWQGRSL+KPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGN+KVRLTAA
Sbjct: 1 MAIWQGRSLKKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAA 60
Query: 61 AYANVFDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVV 120
AYANVFDKSGKGRKVRIIRV+ENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVV
Sbjct: 61 AYANVFDKSGKGRKVRIIRVLENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVV 120
Query: 121 NAILLEE 127
NAILLEE
Sbjct: 121 NAILLEE 127
>sp|P54055|RS8E_METJA 30S RIBOSOMAL PROTEIN S8E >gi|2129274|pir||A64384 ribosomal protein
S8.eR - Methanococcus jannaschii
>gi|1591387|gb|AAB98667.1| (U67514) SSU ribosomal
protein S8E [Methanococcus jannaschii]
Length = 129
Score = 152 bits (379), Expect = 2e-36
Identities = 81/129 (62%), Positives = 98/129 (75%), Gaps = 2/129 (1%)
Query: 1 MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQD-KRKIIRTYGGNKKVRLTA 59
M++WQGRS RKP+GG ARKKRK E+GREP T VAE+ K K +RT GGN KV++
Sbjct: 1 MSVWQGRSRRKPTGGLYRPARKKRKYEMGREPIETHVAEEAFKIKKVRTRGGNLKVKVVR 60
Query: 60 AAYANVFD-KSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDG 118
+ANV D ++G +KV+II V EN AN + RRN+ITKGAIIETEIG AKVTSRPGQDG
Sbjct: 61 TGFANVLDPETGTCKKVKIITVRENKANIHYVRRNVITKGAIIETEIGLAKVTSRPGQDG 120
Query: 119 VVNAILLEE 127
VNAIL++E
Sbjct: 121 TVNAILIKE 129
>sp|O26309|RS8E_METTH 30S RIBOSOMAL PROTEIN S8E >gi|7440241|pir||D69125 ribosomal protein
S8 - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2621252|gb|AAB84713.1| (AE000807) ribosomal
protein S8 [Methanobacterium thermoautotrophicum]
Length = 127
Score = 142 bits (355), Expect = 1e-33
Identities = 71/128 (55%), Positives = 93/128 (72%), Gaps = 2/128 (1%)
Query: 1 MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAA 60
MAIWQG+S++KPSGGR + R KRK ELGREP+ T++ ++ R +IRT GGN KVRL +
Sbjct: 1 MAIWQGKSMKKPSGGRAKMNRGKRKYELGREPAETKIGDRRVR-LIRTRGGNTKVRLASD 59
Query: 61 AYANVFD-KSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGV 119
NV D ++GK I V+EN AN F RRNIIT+GA++ET +G +VTSRPGQDGV
Sbjct: 60 TRINVVDPETGKVEIAEIRNVVENTANPHFVRRNIITRGAVVETNLGNVRVTSRPGQDGV 119
Query: 120 VNAILLEE 127
+N +L+ E
Sbjct: 120 INGVLIRE 127
>gi|11499735 SSU ribosomal protein S8E (rps8E) [Archaeoglobus fulgidus]
>gi|3914931|sp|O28130|RS8E_ARCFU 30S RIBOSOMAL PROTEIN
S8E >gi|7440240|pir||H69518 SSU ribosomal protein S8E
(rps8E) homolog - Archaeoglobus fulgidus
>gi|2648378|gb|AAB89103.1| (AE000956) SSU ribosomal
protein S8E (rps8E) [Archaeoglobus fulgidus]
Length = 125
Score = 142 bits (355), Expect = 1e-33
Identities = 77/125 (61%), Positives = 93/125 (73%), Gaps = 2/125 (1%)
Query: 3 IWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAAAY 62
IWQGRS RKPSGG ARKKRK ELGRE T + E+ +KI R GGN K++L A Y
Sbjct: 2 IWQGRSRRKPSGGFYRKARKKRKYELGREQVETLIGERKVKKI-RVRGGNYKLKLFADKY 60
Query: 63 ANVFD-KSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVVN 121
ANV+D K GK +V I V+ENPA+ +ARRN+ITKGAII T IGKA+VT+RP Q+GVVN
Sbjct: 61 ANVYDPKQGKVVRVEIESVVENPAHVHYARRNVITKGAIIATSIGKARVTNRPSQEGVVN 120
Query: 122 AILLE 126
A+L+E
Sbjct: 121 AVLIE 125
>emb|CAC12168.1| (AL445066) probable 30S ribosomal protein S8 [Thermoplasma
acidophilum]
Length = 127
Score = 134 bits (334), Expect = 4e-31
Identities = 71/127 (55%), Positives = 92/127 (71%), Gaps = 1/127 (0%)
Query: 1 MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAA 60
M I+QG+S +K +GG + +RKKR+ ELGREP+ T++ + +RK+IRT GGN KV L A
Sbjct: 1 MTIFQGKSGKKATGGSLKQSRKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTA 60
Query: 61 AYANVFDKSGKG-RKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGV 119
ANV+D S K +K +II V NPAN + +RNII KG +I TEIG A VTSRPGQDGV
Sbjct: 61 ETANVYDASEKKIKKAKIITVKANPANSHYVQRNIINKGTVIATEIGDAVVTSRPGQDGV 120
Query: 120 VNAILLE 126
+NA LL+
Sbjct: 121 INAKLLK 127
>sp|Q9YDY0|RS8E_AERPE 30S RIBOSOMAL PROTEIN S8E >gi|7440243|pir||G72670 probable
ribosomal protein S8 APE0789 - Aeropyrum pernix (strain
K1) >gi|5104452|dbj|BAA79767.1| (AP000060) 136aa long
hypothetical 30S ribosomal protein S8 [Aeropyrum pernix]
Length = 136
Score = 126 bits (313), Expect = 1e-28
Identities = 67/131 (51%), Positives = 95/131 (72%), Gaps = 4/131 (3%)
Query: 1 MAIWQGRSLRKPSGG-RIVLARKKRKRELGREPSNTRV--AEQDKRKIIRTYGGNKKVRL 57
M I+Q R +KPSGG R + KRK GR P+ T + AE+++RK +R GG+ K++
Sbjct: 1 MGIYQWRDKKKPSGGKRRYYYKVKRKYAAGRPPTYTTLSAAEEEERKPVRARGGSYKIKA 60
Query: 58 TAAAYANVFD-KSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQ 116
A+A V + K+G+ RK RI+R++E PA+R++ARR II KGA+I+T +G+A VTSRPGQ
Sbjct: 61 KKVAFAVVSNPKTGEARKARILRIVETPAHREYARRGIIVKGAVIDTTLGRAVVTSRPGQ 120
Query: 117 DGVVNAILLEE 127
+GVVNA+LLEE
Sbjct: 121 EGVVNAVLLEE 131
>gb|AAK40509.1| LSU ribosomal protein S8E (rps8E) [Sulfolobus solfataricus]
Length = 133
Score = 113 bits (281), Expect = 6e-25
Identities = 63/127 (49%), Positives = 82/127 (63%), Gaps = 1/127 (0%)
Query: 1 MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAA 60
M +QG RK +GG R KRK E+G P+ T ++ +D R RT GGN KVRL
Sbjct: 1 MGFYQGPDNRKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYT 60
Query: 61 AYANVFDKS-GKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGV 119
ANV D + +KV+I+ ++E PAN++ ARR II +GA I TE G A VTSRPGQDGV
Sbjct: 61 TTANVLDPATNTAKKVKILEILETPANKELARRGIIIRGAKIRTEAGLAVVTSRPGQDGV 120
Query: 120 VNAILLE 126
+NA+LL+
Sbjct: 121 INAVLLK 127
>sp|P49402|RS8E_HALMA 30S RIBOSOMAL PROTEIN S8E (HS23) >gi|629389|pir||S49022 ribosomal
protein S8.eR [validated] - Haloarcula marismortui
Length = 123
Score = 106 bits (263), Expect = 8e-23
Identities = 60/122 (49%), Positives = 81/122 (66%), Gaps = 2/122 (1%)
Query: 5 QGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAAAYAN 64
QGRS RK +GGR KK+K ELG++ T+V EQ + K + + G +KVR A+
Sbjct: 4 QGRSPRKRTGGRRRPNHKKKKHELGKDTVETQVGEQ-RLKTVDSRGNTQKVRAVKTDVAS 62
Query: 65 VFDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVVNAIL 124
+ D + + I V+ENP+N +ARRNIITKGAI+ET G+A+VTSRPGQ G VNA+L
Sbjct: 63 IAD-GAETIEATIENVVENPSNPNYARRNIITKGAILETSEGQARVTSRPGQHGQVNAVL 121
Query: 125 LE 126
+E
Sbjct: 122 VE 123
>gb|AAG19920.1| (AE005076) 30S ribosomal protein S8E; Rps8e [Halobacterium sp.
NRC-1]
Length = 124
Score = 103 bits (255), Expect = 7e-22
Identities = 62/124 (50%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 4 WQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAAAYA 63
+QGRS R +G R+ KK K ELGREP+ T V E + + + G +KVR+ +
Sbjct: 3 YQGRSKRSKTGARLRPRSKKSKSELGREPTETTVGEP-RFRTVDVRGDAEKVRVLSTNVV 61
Query: 64 NVFDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVVNAI 123
NV SG R I V N AN +ARRNIITKGAIIET+ G A+VTSRPGQDG VNA
Sbjct: 62 NVATDSGAERAT-IEDVSANDANPNYARRNIITKGAIIETDAGTARVTSRPGQDGQVNAT 120
Query: 124 LLEE 127
++E
Sbjct: 121 RVDE 124
>sp|O14049|RS8_SCHPO 40S RIBOSOMAL PROTEIN S8 >gi|7489959|pir||T38527 40s ribosomal
protein - fission yeast (Schizosaccharomyces pombe)
>gi|2414627|emb|CAB16376.1| (Z99259) 40s ribosomal
protein s8. [Schizosaccharomyces pombe]
Length = 200
Score = 70.2 bits (169), Expect = 8e-12
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 7 RSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAAAYANV- 65
R R +G + RKKRK ELGR+PSNTR+ + + +R GGNKK R N
Sbjct: 8 RHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHE-VRVRGGNKKFRALRLDSGNFS 66
Query: 66 FDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKV 110
+ G +K RII+V +P+N + R N +TK AI++ + +V
Sbjct: 67 WGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRV 111
>emb|CAB86469.1| (AL163481) 40s ribosomal protein s8 [Schizosaccharomyces pombe]
Length = 200
Score = 70.2 bits (169), Expect = 8e-12
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 7 RSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAAAYANV- 65
R R +G + RKKRK ELGR+PSNTR+ + + +R GGNKK R N
Sbjct: 8 RHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHE-VRVRGGNKKFRALRLDSGNFS 66
Query: 66 FDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKV 110
+ G +K RII+V +P+N + R N +TK AI++ + +V
Sbjct: 67 WGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRV 111
>gi|6319399 Ribosomal protein S8A (S14A) (rp19) (YS9); Rps8ap [Saccharomyces
cerevisiae] >gi|6320949|ref|NP_011028.1| Ribosomal
protein S8B (S14B) (rp19) (YS9); Rps8bp [Saccharomyces
cerevisiae] >gi|464725|sp|P05754|RS8_YEAST 40S RIBOSOMAL
PROTEIN S8 (S14) (YS9) (RP19) >gi|625512|pir||S45591
ribosomal protein S8.e, cytosolic - yeast (Saccharomyces
cerevisiae) >gi|407523|emb|CAA81525.1| (Z26879)
ribosomal protein S8 [Saccharomyces cerevisiae]
>gi|536115|emb|CAA84893.1| (Z35833) ORF YBL072c
[Saccharomyces cerevisiae] >gi|603340|gb|AAB64657.1|
(U18839) Rps8bp: Ribosome protein, small subunit
[Saccharomyces cerevisiae]
Length = 200
Score = 67.1 bits (161), Expect = 7e-11
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 7 RSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAAAYANV- 65
R R +G + RKKRK ELGR+P+NT++ + + +RT GGNKK R N
Sbjct: 8 RHKRSATGAKRAQFRKKRKFELGRQPANTKIGAK-RIHSVRTRGGNKKYRALRIETGNFS 66
Query: 66 FDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETE 104
+ G +K RI V+ +P+N + R N +TK AI++ +
Sbjct: 67 WASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQID 105
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.135 0.371
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44021716
Number of Sequences: 2977
Number of extensions: 1590132
Number of successful extensions: 4368
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4339
Number of HSP's gapped (non-prelim): 16
length of query: 127
length of database: 189,106,746
effective HSP length: 56
effective length of query: 71
effective length of database: 155,591,474
effective search space: 11046994654
effective search space used: 11046994654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 160 (66.7 bits)