BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0752 (PAB0752) DE:Hypothetical protein
         (433 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75093 hypothetical protein PAB0752 - Pyrococcus abyssi (st...   852  0.0
pir||E71050 hypothetical protein PH1100 - Pyrococcus horikoshii ...   638  0.0

>pir||B75093 hypothetical protein PAB0752 - Pyrococcus abyssi (strain Orsay)
           >gi|5458559|emb|CAB50047.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 433
           
 Score =  852 bits (2176), Expect = 0.0
 Identities = 433/433 (100%), Positives = 433/433 (100%)

Query: 1   MKRMFEFENENGIRFKVREVLKALTALLILLWLFKGWLRLEAYNEEMVWGIIILIIVVEL 60
           MKRMFEFENENGIRFKVREVLKALTALLILLWLFKGWLRLEAYNEEMVWGIIILIIVVEL
Sbjct: 1   MKRMFEFENENGIRFKVREVLKALTALLILLWLFKGWLRLEAYNEEMVWGIIILIIVVEL 60

Query: 61  LGVGRWIGVTVSGVIFSLAKAAFLIALFLFFGKWLGLPKDFPVDAKTAFAYSIVLGIAGL 120
           LGVGRWIGVTVSGVIFSLAKAAFLIALFLFFGKWLGLPKDFPVDAKTAFAYSIVLGIAGL
Sbjct: 61  LGVGRWIGVTVSGVIFSLAKAAFLIALFLFFGKWLGLPKDFPVDAKTAFAYSIVLGIAGL 120

Query: 121 LVARFNFPITRRGITPKVEKKAYEFEGFSYKGVSLSGSGKAYPIKLGRKRVGWAIEGDIV 180
           LVARFNFPITRRGITPKVEKKAYEFEGFSYKGVSLSGSGKAYPIKLGRKRVGWAIEGDIV
Sbjct: 121 LVARFNFPITRRGITPKVEKKAYEFEGFSYKGVSLSGSGKAYPIKLGRKRVGWAIEGDIV 180

Query: 181 VEAKTPLGIIRRKLMDPVVIWSPISVGSRKTPPNQAFVDTVNSLLETPTTYLRERSAIDL 240
           VEAKTPLGIIRRKLMDPVVIWSPISVGSRKTPPNQAFVDTVNSLLETPTTYLRERSAIDL
Sbjct: 181 VEAKTPLGIIRRKLMDPVVIWSPISVGSRKTPPNQAFVDTVNSLLETPTTYLRERSAIDL 240

Query: 241 GIIKVYEGDDFTYVKLPFIEVIDTPHGEEVRMGPFRIRDGNIRRFSREMLTIQELRNGFK 300
           GIIKVYEGDDFTYVKLPFIEVIDTPHGEEVRMGPFRIRDGNIRRFSREMLTIQELRNGFK
Sbjct: 241 GIIKVYEGDDFTYVKLPFIEVIDTPHGEEVRMGPFRIRDGNIRRFSREMLTIQELRNGFK 300

Query: 301 LTVLDDKITIITEDFKIEVSKDRILYRSSEERLTIGEKYVSLSSGDVSISVGRGIGRIKI 360
           LTVLDDKITIITEDFKIEVSKDRILYRSSEERLTIGEKYVSLSSGDVSISVGRGIGRIKI
Sbjct: 301 LTVLDDKITIITEDFKIEVSKDRILYRSSEERLTIGEKYVSLSSGDVSISVGRGIGRIKI 360

Query: 361 EDTIISASDGKVKVRINGKSYTIESREAFELVLRKAKEIVQEQAEDVIEGLGIDKIKLGR 420
           EDTIISASDGKVKVRINGKSYTIESREAFELVLRKAKEIVQEQAEDVIEGLGIDKIKLGR
Sbjct: 361 EDTIISASDGKVKVRINGKSYTIESREAFELVLRKAKEIVQEQAEDVIEGLGIDKIKLGR 420

Query: 421 RIKELIDELMKHL 433
           RIKELIDELMKHL
Sbjct: 421 RIKELIDELMKHL 433


>pir||E71050 hypothetical protein PH1100 - Pyrococcus horikoshii
           >gi|3257516|dbj|BAA30199.1| (AP000005) 431aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 431
           
 Score =  638 bits (1628), Expect = 0.0
 Identities = 300/433 (69%), Positives = 375/433 (86%), Gaps = 2/433 (0%)

Query: 1   MKRMFEFENENGIRFKVREVLKALTALLILLWLFKGWLRLEAYNEEMVWGIIILIIVVEL 60
           MK MF  E   GIRFK+R+ LKA+TALLI+LWLFKGWLRLEAYNEEMVW II LII+ E+
Sbjct: 1   MKIMFSVEE--GIRFKIRDALKAITALLIILWLFKGWLRLEAYNEEMVWAIITLIIITEI 58

Query: 61  LGVGRWIGVTVSGVIFSLAKAAFLIALFLFFGKWLGLPKDFPVDAKTAFAYSIVLGIAGL 120
           LGVGRWIG+T+SG+I SLAKAAFLIA+FLFFGKWL LPKDFP+DAKTAFAYS+VLGIAG+
Sbjct: 59  LGVGRWIGITISGIILSLAKAAFLIAIFLFFGKWLDLPKDFPIDAKTAFAYSVVLGIAGI 118

Query: 121 LVARFNFPITRRGITPKVEKKAYEFEGFSYKGVSLSGSGKAYPIKLGRKRVGWAIEGDIV 180
           LVA+F+FP+++  + P+VEKKAY+F GFSY  V LSG GKAYPIKLGRKR+GWAIEG+++
Sbjct: 119 LVAKFDFPLSKGEVYPRVEKKAYKFNGFSYGKVKLSGEGKAYPIKLGRKRIGWAIEGEVI 178

Query: 181 VEAKTPLGIIRRKLMDPVVIWSPISVGSRKTPPNQAFVDTVNSLLETPTTYLRERSAIDL 240
           VEA TPLG+I+RKL+ PV IW+ I++ S K  PN  FVDT NSLL  PTTY +E+S+IDL
Sbjct: 179 VEADTPLGVIKRKLIAPVAIWTSINIASEKASPNLTFVDTANSLLSAPTTYTKEKSSIDL 238

Query: 241 GIIKVYEGDDFTYVKLPFIEVIDTPHGEEVRMGPFRIRDGNIRRFSREMLTIQELRNGFK 300
           GI+KVYEG+DFTYVKLPF+EV++TP GEEV++GPF+IR+G+  +  ++M+TIQELRNGFK
Sbjct: 239 GILKVYEGEDFTYVKLPFLEVVETPQGEEVKIGPFKIREGSTEKPRKDMITIQELRNGFK 298

Query: 301 LTVLDDKITIITEDFKIEVSKDRILYRSSEERLTIGEKYVSLSSGDVSISVGRGIGRIKI 360
           LT+L +++TI TEDFKIE   DRILY+S EE+L IG+ YVSL SG +SISVGR  G+I+I
Sbjct: 299 LTILGERLTITTEDFKIETIGDRILYKSGEEKLAIGDGYVSLDSGTISISVGRDSGKIRI 358

Query: 361 EDTIISASDGKVKVRINGKSYTIESREAFELVLRKAKEIVQEQAEDVIEGLGIDKIKLGR 420
           EDT+ISAS+GKVK+RI  K+Y IES EAF+LVL KA+EIV+EQA+D+IEGLGID+ +L R
Sbjct: 359 EDTVISASEGKVKIRIGSKNYIIESEEAFKLVLEKAREIVEEQADDIIEGLGIDRARLNR 418

Query: 421 RIKELIDELMKHL 433
           RIKEL+++LM+++
Sbjct: 419 RIKELVEKLMEYI 431


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.143    0.410 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155363990
Number of Sequences: 2977
Number of extensions: 6744511
Number of successful extensions: 17319
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17313
Number of HSP's gapped (non-prelim): 2
length of query: 433
length of database: 189,106,746
effective HSP length: 55
effective length of query: 378
effective length of database: 156,189,961
effective search space: 59039805258
effective search space used: 59039805258
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)