BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0753 (PAB0753) DE:Hypothetical protein
         (212 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75093 hypothetical protein PAB0753 - Pyrococcus abyssi (st...   415  e-115
pir||D71050 hypothetical protein PH1099 - Pyrococcus horikoshii ...   229  1e-59

>pir||C75093 hypothetical protein PAB0753 - Pyrococcus abyssi (strain Orsay)
           >gi|5458560|emb|CAB50048.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 212
           
 Score =  415 bits (1056), Expect = e-115
 Identities = 212/212 (100%), Positives = 212/212 (100%)

Query: 1   MIFHRIRKVIVNSVNGTITVEGVDDDFVTVEYEIHGEADVEVKQEGDTLIVREKPKERRI 60
           MIFHRIRKVIVNSVNGTITVEGVDDDFVTVEYEIHGEADVEVKQEGDTLIVREKPKERRI
Sbjct: 1   MIFHRIRKVIVNSVNGTITVEGVDDDFVTVEYEIHGEADVEVKQEGDTLIVREKPKERRI 60

Query: 61  FGIIKTSSEGRADIWISVPRNVEVEISSVNGPIKAENCLVRSVNSTNSGITLKGVEVSEV 120
           FGIIKTSSEGRADIWISVPRNVEVEISSVNGPIKAENCLVRSVNSTNSGITLKGVEVSEV
Sbjct: 61  FGIIKTSSEGRADIWISVPRNVEVEISSVNGPIKAENCLVRSVNSTNSGITLKGVEVSEV 120

Query: 121 RTVNGSITGSIELAKDLDVKAVNGRIELEIQDIEGDGMITAVNGSIKLTLTEFCDVTIIA 180
           RTVNGSITGSIELAKDLDVKAVNGRIELEIQDIEGDGMITAVNGSIKLTLTEFCDVTIIA
Sbjct: 121 RTVNGSITGSIELAKDLDVKAVNGRIELEIQDIEGDGMITAVNGSIKLTLTEFCDVTIIA 180

Query: 181 KTVNGKVEAPPREGRYELRVHTVNGSVKVEVI 212
           KTVNGKVEAPPREGRYELRVHTVNGSVKVEVI
Sbjct: 181 KTVNGKVEAPPREGRYELRVHTVNGSVKVEVI 212


>pir||D71050 hypothetical protein PH1099 - Pyrococcus horikoshii
           >gi|3257515|dbj|BAA30198.1| (AP000005) 208aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 208
           
 Score =  229 bits (579), Expect = 1e-59
 Identities = 114/210 (54%), Positives = 160/210 (75%), Gaps = 4/210 (1%)

Query: 1   MIFHRIRKVIVNSVNGTITVEGVDDDFVTVEYEIHGEADVEVKQEGDTLIVREKPKERRI 60
           MIF+ I++VIV+SVNG+I V+G + D+V +EYEI G+ADV +++E DTLI++EK K R I
Sbjct: 1   MIFYGIKRVIVSSVNGSIRVKGSNIDYVKLEYEIQGDADVRIEREEDTLIIKEKLKRRWI 60

Query: 61  FGIIKTSSEGRADIWISVPRNVEVEISSVNGPIKAENCLVRSVNSTNSGITLKGVEVSEV 120
            GI+    +G+ +I ++VP  VEVEI+SVNGPI+AENC +  + STNS ITLK  ++ +V
Sbjct: 61  LGIL--GRDGKVNISLTVPSEVEVEITSVNGPIRAENCRITGIKSTNSSITLKDAKIGKV 118

Query: 121 RTVNGSITGSIELAKDLDVKAVNGRIELEIQDIEGDGMITAVNGSIKLTLTEFCDVTIIA 180
            TVNG++ GS++L ++ +VK VNG I+L+I +IEGDG I+ VNG + LT+ +  DV I A
Sbjct: 119 HTVNGTVRGSVKLTEEPEVKTVNGNIDLKIYEIEGDGKISTVNGGVNLTIMD--DVKINA 176

Query: 181 KTVNGKVEAPPREGRYELRVHTVNGSVKVE 210
           KTV GK+E PP EG +ELR+ TVNGS+ VE
Sbjct: 177 KTVTGKIEVPPMEGVHELRIATVNGSITVE 206


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.314    0.135    0.367 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72139582
Number of Sequences: 2977
Number of extensions: 2787728
Number of successful extensions: 8435
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8424
Number of HSP's gapped (non-prelim): 3
length of query: 212
length of database: 189,106,746
effective HSP length: 59
effective length of query: 153
effective length of database: 153,796,013
effective search space: 23530789989
effective search space used: 23530789989
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 163 (67.9 bits)