BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0757 (PAB0757) DE:THYMIDYLATE KINASE related (EC 2.7.4.9)
(180 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75093 thymidylate kinase related PAB0757 - Pyrococcus abys... 357 4e-98
sp|O58998|YC55_PYRHO HYPOTHETICAL PROTEIN PH1255 >gi|7450212|pir... 320 6e-87
sp|Q58450|YA50_METJA HYPOTHETICAL PROTEIN MJ1050 >gi|2128644|pir... 142 3e-33
gi|11499583 conserved hypothetical protein [Archaeoglobus fulgid... 133 1e-30
sp|O27656|YG19_METTH HYPOTHETICAL PROTEIN MTH1619 >gi|7450210|pi... 109 3e-23
gi|6320035 Ydl166cp [Saccharomyces cerevisiae] >gi|6831740|sp|Q1... 90 1e-17
gb|AAF09498.1| (AF195950) unknown protein [Oryctolagus sp.] 90 1e-17
gb|AAK40785.1| Conserved hypothetical protein [Sulfolobus solfat... 90 1e-17
gb|AAG19442.1| (AE005037) Vng1031c [Halobacterium sp. NRC-1] 89 4e-17
gi|7706212 adrenal gland protein AD-004 [Homo sapiens] >gi|68317... 88 7e-17
pir||T41637 conserved hypothetical protein SPCC830.11c - fission... 78 8e-14
emb|CAC11710.1| (AL445064) conserved hypothetical protein [Therm... 77 1e-13
dbj|BAB10972.1| (AB015471) gene_id:K9B18.5~ref|NP_057367.1~simil... 75 4e-13
>pir||H75093 thymidylate kinase related PAB0757 - Pyrococcus abyssi (strain
Orsay) >gi|5458565|emb|CAB50053.1| (AJ248286)
THYMIDYLATE KINASE related (EC 2.7.4.9) [Pyrococcus
abyssi]
Length = 180
Score = 357 bits (907), Expect = 4e-98
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVDGEVEVEIDELAYFVE 60
MLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVDGEVEVEIDELAYFVE
Sbjct: 1 MLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVDGEVEVEIDELAYFVE 60
Query: 61 KELKDRNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELVDAIL 120
KELKDRNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELVDAIL
Sbjct: 61 KELKDRNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELVDAIL 120
Query: 121 IEAIDEHENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVGIVDWSEVYDEIIPYLRLGGE 180
IEAIDEHENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVGIVDWSEVYDEIIPYLRLGGE
Sbjct: 121 IEAIDEHENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVGIVDWSEVYDEIIPYLRLGGE 180
>sp|O58998|YC55_PYRHO HYPOTHETICAL PROTEIN PH1255 >gi|7450212|pir||B71070 hypothetical
protein PH1255 - Pyrococcus horikoshii
>gi|3257673|dbj|BAA30356.1| (AP000005) 180aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 180
Score = 320 bits (812), Expect = 6e-87
Identities = 153/180 (85%), Positives = 172/180 (95%)
Query: 1 MLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVDGEVEVEIDELAYFVE 60
MLIAITGTPGVGKTT+AKLLA+KL YEYV+L+DFALEKGCGR V+ EVEVEIDELAYF+E
Sbjct: 1 MLIAITGTPGVGKTTVAKLLAKKLNYEYVSLKDFALEKGCGRRVNDEVEVEIDELAYFIE 60
Query: 61 KELKDRNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELVDAIL 120
+ELK +N VLDGHLSHLMPVDLVVVLRAHP++IGERLRERGY +EKIGENVEAELVDA+L
Sbjct: 61 RELKGKNAVLDGHLSHLMPVDLVVVLRAHPKLIGERLRERGYDREKIGENVEAELVDAVL 120
Query: 121 IEAIDEHENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVGIVDWSEVYDEIIPYLRLGGE 180
IEAI+EHENVIEVDTTNK+PE++VEEI+ LI SG+K+RVGIVDWSEVYDEIIPYLRLGGE
Sbjct: 121 IEAIEEHENVIEVDTTNKSPEDVVEEIVSLINSGIKKRVGIVDWSEVYDEIIPYLRLGGE 180
>sp|Q58450|YA50_METJA HYPOTHETICAL PROTEIN MJ1050 >gi|2128644|pir||A64431 hypothetical
protein MJ1050 - Methanococcus jannaschii
>gi|1499895|gb|AAB99053.1| (U67548) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 177
Score = 142 bits (354), Expect = 3e-33
Identities = 75/172 (43%), Positives = 117/172 (67%), Gaps = 8/172 (4%)
Query: 1 MLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVDGEVE---VEIDELAY 57
M IAITGTPGVGKTTI+K+L ++LG + +++ + + E D +++ ++ ++L
Sbjct: 1 MRIAITGTPGVGKTTISKVLRDRLGIKVIDITEAVKKYKLYTEKDEDMDSYVIDFEKLEK 60
Query: 58 FVEK-ELKDRNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELV 116
F+++ E K++ ++LDGH+SHL+ D ++VLR +P II ERL +RGY +K+ EN++AE++
Sbjct: 61 FIDEIEEKEKTIILDGHVSHLLNPDYIIVLRCNPEIIKERLEKRGYKPKKVLENIQAEIL 120
Query: 117 DAILIEAIDEHENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVGIVDWSEVY 168
D L E+ V E+DTTN+ E IV+EII IK K R G+VDW+E Y
Sbjct: 121 DVCLCES---KGKVYEIDTTNRDVENIVDEIIEAIKH-KKERKGVVDWTEKY 168
>gi|11499583 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3123135|sp|O28278|YK01_ARCFU HYPOTHETICAL PROTEIN
AF2001 >gi|7450209|pir||H69499 conserved hypothetical
protein AF2001 - Archaeoglobus fulgidus
>gi|2648537|gb|AAB89254.1| (AE000964) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 178
Score = 133 bits (331), Expect = 1e-30
Identities = 72/182 (39%), Positives = 120/182 (65%), Gaps = 12/182 (6%)
Query: 1 MLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCG-REVDGEVEVEIDELAYFV 59
MLIA+TGTPG GK+++A+ L E+ GY+ + + A + GC E DGE+ ++++ LA +
Sbjct: 1 MLIALTGTPGTGKSSVAERLRER-GYKVATVVELAEKHGCIIDEEDGEIVIDVESLAARI 59
Query: 60 EKELKDRNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELVDAI 119
+ E +++GHLSHL+ D+ +VLR +P ++ ERL+ R +S+EK+ EN+EAE++D I
Sbjct: 60 DFE-----GIVEGHLSHLLKPDVAIVLRCNPAVLRERLKGRNWSEEKLLENLEAEMLDVI 114
Query: 120 LIEAIDEHENVIEVDTTNKTPEEIVEEIIGLIKSGVKRR----VGIVDW-SEVYDEIIPY 174
L+EA++ V E+DTT + EE++E + +I+ + R G +DW SE+ D I +
Sbjct: 115 LVEALEHASEVYEIDTTEMSLEEVIEAVEAIIRGDREARKRYKPGGIDWLSELEDRIEEF 174
Query: 175 LR 176
+R
Sbjct: 175 MR 176
>sp|O27656|YG19_METTH HYPOTHETICAL PROTEIN MTH1619 >gi|7450210|pir||C69083 conserved
hypothetical protein MTH1619 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622745|gb|AAB86092.1| (AE000921) conserved protein
(adenylate kinase related) [Methanobacterium
thermoautotrophicum]
Length = 171
Score = 109 bits (269), Expect = 3e-23
Identities = 69/169 (40%), Positives = 105/169 (61%), Gaps = 8/169 (4%)
Query: 2 LIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKG--CGRE-VDGEVEVEIDELAYF 58
+I ITGTPGVGKTT+A +L E+ G E ++L + +KG GR+ + G +E +I+
Sbjct: 1 MICITGTPGVGKTTLAGILRER-GLEVISLGELIRQKGFVLGRDPIRGYLEADIEAACSH 59
Query: 59 VEKELKDRNVVLDGHLSHLM-PVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELVD 117
++ E++ +VV +GHLSHL +V+VLR HP ++ RL RGY + K+ EN+EAE +D
Sbjct: 60 LQ-EMEGLDVV-EGHLSHLCRSCSMVIVLRLHPEVLRGRLEGRGYPEGKVLENLEAEALD 117
Query: 118 AILIEAIDEH-ENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVGIVDWS 165
+EA + H E V EVDTT ++P E+ + I ++ G VD+S
Sbjct: 118 VCTVEAFEIHGERVHEVDTTGRSPHEVADIITDIMNGSRVCPPGGVDFS 166
>gi|6320035 Ydl166cp [Saccharomyces cerevisiae]
>gi|6831740|sp|Q12055|YDB6_YEAST HYPOTHETICAL 22.7 KDA
PROTEIN IN CDC36-NRP1 INTERGENIC REGION
>gi|2131352|pir||S61047 hypothetical protein YDL166c -
yeast (Saccharomyces cerevisiae)
>gi|1061273|emb|CAA91580.1| (Z67750) putative protein
[Saccharomyces cerevisiae] >gi|1431264|emb|CAA98740.1|
(Z74214) ORF YDL166c [Saccharomyces cerevisiae]
Length = 197
Score = 90.5 bits (221), Expect = 1e-17
Identities = 53/156 (33%), Positives = 88/156 (55%), Gaps = 7/156 (4%)
Query: 3 IAITGTPGVGKTTIAKLLAEKL-GYEYVNLRDFALEKGCGREVDGEVE---VEIDELAYF 58
I +TGTPG GK++ + L KL Y+Y N+ DFA + C D + V+ D+L
Sbjct: 10 IIVTGTPGCGKSSTCEFLKNKLKDYKYYNISDFAKDNDCFEGYDEGRKSHIVDEDKLLDM 69
Query: 59 VEKELKDRNVVLDGHLSHLMP---VDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAEL 115
+E L+ N ++D H++ + P +DLVVVLR + RL RGY KI EN++AE+
Sbjct: 70 LEPLLRQGNSIVDWHVNDVFPERLIDLVVVLRCDNSNLYSRLHARGYHDSKIEENLDAEI 129
Query: 116 VDAILIEAIDEHENVIEVDTTNKTPEEIVEEIIGLI 151
+ + +A++ +E I V+ + T E++V + ++
Sbjct: 130 MGVVKQDAVESYEPHIVVELQSDTKEDMVSNVSRIV 165
>gb|AAF09498.1| (AF195950) unknown protein [Oryctolagus sp.]
Length = 172
Score = 90.5 bits (221), Expect = 1e-17
Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 6/156 (3%)
Query: 3 IAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVDGEVEVEI---DELAYFV 59
I +TGTPGVGKTT+ K LA + G +YVN+ D A E D E I D + +
Sbjct: 6 ILLTGTPGVGKTTLGKELASRSGLKYVNVGDLAREGELYDGFDEEYNCPILDEDRVIDEL 65
Query: 60 EKELKDRNVVLDGHLSHLMP---VDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELV 116
+ +++D V++D H P +V VLR ++ +RL RGYS++K+ +N++ E+
Sbjct: 66 DTQMRDGGVIVDYHGCDFFPERWFHIVFVLRTETSVLYKRLETRGYSEKKLNDNIQCEIF 125
Query: 117 DAILIEAIDEHENVIEVDTTNKTPEEIVEEIIGLIK 152
+ EA++ ++ I + PEE+ E I ++K
Sbjct: 126 QVLYEEAMESYKEEIVHQLPSNKPEELEENISQILK 161
>gb|AAK40785.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 187
Score = 90.1 bits (220), Expect = 1e-17
Identities = 59/169 (34%), Positives = 96/169 (55%), Gaps = 11/169 (6%)
Query: 1 MLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVD---GEVEVEIDELAY 57
M+I +TGTPGVGKT +K L+E L Y++L F +E E D ++ D++
Sbjct: 1 MIIIVTGTPGVGKTVASKKLSEALNLNYLSLSQFVIENKLYTEYDELRQSYIIDEDKVKE 60
Query: 58 FVEKELKDRNVVLDG-HLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELV 116
+EK + ++V++ + S + DLVVVLR +P + L+ RG++ K+ ENVEAE++
Sbjct: 61 ELEKIISTSHLVIETIYPSLVSTADLVVVLRKNPFSLYNELKGRGWADIKVAENVEAEIL 120
Query: 117 DAILIEAIDE-HENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVGIVDW 164
I EA + + V EVDTT + E+I+ +I+ K+ G ++W
Sbjct: 121 GVISQEAREAFKDKVCEVDTTEMSTEQILNKILN------KQCDGPIEW 163
>gb|AAG19442.1| (AE005037) Vng1031c [Halobacterium sp. NRC-1]
Length = 169
Score = 88.5 bits (216), Expect = 4e-17
Identities = 60/173 (34%), Positives = 96/173 (54%), Gaps = 13/173 (7%)
Query: 1 MLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVD---GEVEVEIDELA- 56
M +A+TGTPG GKTT L L ++N D +G VD G V++D +
Sbjct: 1 MRVAVTGTPGTGKTTATGRLDTALDVAHLN--DLVGTEGLYDGVDADRGSKIVDVDAVRD 58
Query: 57 YFVEKELKDRNVVLDGHLSH-LMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAEL 115
+F +E +V+++ HL+H L +D VVVLR P + RL++RG S EK EN ++E
Sbjct: 59 HFAGRE----DVLVESHLAHRLDDLDAVVVLRCAPETLATRLQDRGDSPEKAAENADSEA 114
Query: 116 VDAILIEAIDEH--ENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVGIVDWSE 166
+ IL EA+ H + V E+DTT+++P+ + I ++ + G VD+++
Sbjct: 115 LAIILSEAVRGHGADAVYEIDTTDRSPDAVAAAIQAVLDGDREPSAGTVDYTD 167
>gi|7706212 adrenal gland protein AD-004 [Homo sapiens]
>gi|6831735|sp|Q9Y3D8|AD04_HUMAN ADRENAL GLAND PROTEIN
AD-004 (CGI-137) >gi|4929743|gb|AAD34132.1|AF151895_1
(AF151895) CGI-137 protein [Homo sapiens]
>gi|6523801|gb|AAF14860.1|AF110777_1 (AF110777) adrenal
gland protein AD-004 [Homo sapiens]
Length = 172
Score = 87.8 bits (214), Expect = 7e-17
Identities = 52/163 (31%), Positives = 89/163 (53%), Gaps = 9/163 (5%)
Query: 3 IAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVDGEVEVEI---DELAYFV 59
I +TGTPGVGKTT+ K LA K G +Y+N+ D A E+ D E + I D + +
Sbjct: 6 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDEL 65
Query: 60 EKELKDRNVVLDGHLSHLMP---VDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELV 116
+ ++++ V++D H P +V VLR ++ ERL RGY+++K+ +N++ E+
Sbjct: 66 DNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIF 125
Query: 117 DAILIEAIDEHENVIEVDTTNKTPEEI---VEEIIGLIKSGVK 156
+ EA ++ I + PEE+ V++I+ I+ +K
Sbjct: 126 QVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQWIK 168
>pir||T41637 conserved hypothetical protein SPCC830.11c - fission yeast
(Schizosaccharomyces pombe) >gi|5738876|emb|CAB52884.1|
(AL109850) conserved hypothetical protein
[Schizosaccharomyces pombe]
Length = 175
Score = 77.6 bits (188), Expect = 8e-14
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 6/147 (4%)
Query: 3 IAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVDGE---VEVEIDELAYFV 59
I I GTPG GKTT+A+ +AE E + + D E D + +V+ D++ ++
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTELENICIGDVVKENHLHFGFDEKWKTYDVDEDKVLDYL 70
Query: 60 EKELKDRNVVLDGHLSHLMP---VDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELV 116
E +L ++D H L +DLVVVLR + ERL RGYS EKI EN EAE++
Sbjct: 71 EPKLLKGGCIIDWHTCGLFSEELIDLVVVLRTDHSKLWERLESRGYSLEKIQENNEAEIM 130
Query: 117 DAILIEAIDEHENVIEVDTTNKTPEEI 143
L EA + + I V+ +++ EE+
Sbjct: 131 QICLEEARESFDPKIVVELPSESIEEM 157
>emb|CAC11710.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 166
Score = 77.3 bits (187), Expect = 1e-13
Identities = 45/124 (36%), Positives = 76/124 (61%), Gaps = 7/124 (5%)
Query: 2 LIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVDGEVEVEIDELAYFVEK 61
LI I+G PG GK+TI LL + LGY V A++ GC + G+ EV++D L+ +
Sbjct: 19 LICISGIPGTGKSTICNLLND-LGYTCVEGNALAVKYGC---LSGD-EVDVDCLSDRMRS 73
Query: 62 ELKDRNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELVDAILI 121
+ + ++ H +HL+P ++V++L A + +R+ +RGYS EKI EN++A+ D I
Sbjct: 74 D--NFKGIVAAHYAHLLPCNIVIILEADESALRQRMMDRGYSPEKIDENLDAQRSDTIYA 131
Query: 122 EAID 125
E+++
Sbjct: 132 ESLE 135
>dbj|BAB10972.1| (AB015471) gene_id:K9B18.5~ref|NP_057367.1~similar to unknown
protein [Arabidopsis thaliana]
Length = 178
Score = 75.3 bits (182), Expect = 4e-13
Identities = 47/151 (31%), Positives = 74/151 (48%), Gaps = 6/151 (3%)
Query: 3 IAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVDGEVE---VEIDELAYFV 59
+ ITGTPG GK+T A LAE Y+ + D EK D E+E + D + +
Sbjct: 16 LLITGTPGTGKSTTASALAEATNLRYICIGDLVKEKEFYHGWDNELECHFINEDSVIDEL 75
Query: 60 EKELKDRNVVLDGHLSHLMP---VDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELV 116
+ + + ++D H P D VVVLR ++ +RL RGYS K+ N++ E+
Sbjct: 76 DDAMIEGGNIVDYHGCDFFPQRWFDRVVVLRTENSVLYDRLTNRGYSGTKLSNNLQCEMY 135
Query: 117 DAILIEAIDEHENVIEVDTTNKTPEEIVEEI 147
+L EA D ++ I + + T E+I +
Sbjct: 136 QVLLEEAHDSYDEEIVTELQSNTIEDISNNV 166
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.141 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68765790
Number of Sequences: 2977
Number of extensions: 2963857
Number of successful extensions: 14069
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 14044
Number of HSP's gapped (non-prelim): 14
length of query: 180
length of database: 189,106,746
effective HSP length: 55
effective length of query: 125
effective length of database: 156,189,961
effective search space: 19523745125
effective search space used: 19523745125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.5 bits)
S2: 162 (67.5 bits)