BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0760 (PAB0760) DE:HYPOTHETICAL RNA METHYLTRANSFERASE
(410 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75094 probable RNA methyltransferase PAB0760 - Pyrococcus ... 835 0.0
pir||G71070 hypothetical protein PH1259 - Pyrococcus horikoshii ... 678 0.0
pir||C71055 probable RNA methyltransferase - Pyrococcus horikosh... 371 e-102
pir||H75085 probable RNA methyltransferase PAB0719 - Pyrococcus ... 353 3e-96
dbj|BAB04406.1| (AP001509) RNA methyltransferase [Bacillus halod... 171 1e-41
pir||E69793 RNA methyltransferase homolog yefA - Bacillus subtil... 166 4e-40
pir||E72298 hypothetical protein TM1094 - Thermotoga maritima (s... 164 2e-39
pir||S77558 hypothetical protein sll1967 - Synechocystis sp. (st... 157 2e-37
dbj|BAA20428.1| (AB004554) orf1; putative [Synechocystis sp.] 157 2e-37
pir||F69806 RNA methyltransferase homolog yfjO - Bacillus subtil... 152 9e-36
dbj|BAB04616.1| (AP001510) RNA methyltransferase [Bacillus halod... 143 3e-33
pir||E70323 RNA methyltransferase (TrmA-family) - Aquifex aeolic... 138 2e-31
dbj|BAB01724.1| (AB023045) RNA methyltransferase-like protein [A... 123 5e-27
sp|P55137|Y742_CHLTR HYPOTHETICAL RNA METHYLTRANSFERASE CT742 (P... 121 2e-26
pir||H71476 probable rRNA methyltransferse - Chlamydia trachomat... 121 2e-26
pir||B83530 probable RNA methyltransferase PA0933 [imported] - P... 118 1e-25
sp|P55135|YGCA_ECOLI HYPOTHETICAL RNA METHYLTRANSFERASE IN RELA-... 113 5e-24
emb|CAC01942.1| (AJ250970) tRNA(m5U54)methyltransferase [Sacchar... 111 1e-23
sp|P44643|YGCA_HAEIN HYPOTHETICAL RNA METHYLTRANSFERASE HI0333 >... 110 3e-23
sp|Q09833|YAD7_SCHPO HYPOTHETICAL 59.6 KD PROTEIN C4G8.07C IN CH... 110 3e-23
gi|6680315 HpaII tiny fragments locus 9c [Mus musculus] >gi|3183... 109 8e-23
gb|AAA91052.1| (M94254) pCTHom1 gene product [Chlamydia trachoma... 108 1e-22
pir||A82399 probable TrmA family RNA methyltransferase VCA0929 [... 108 1e-22
gb|AAF49200.2| (AE003518) CG3808 gene product [Drosophila melano... 108 2e-22
pir||A82075 probable TrmA family RNA methyltransferase VC2452 [i... 105 1e-21
dbj|BAB15067.1| (AK025106) unnamed protein product [Homo sapiens] 104 1e-21
pir||T50920 hypothetical protein ygcA [imported] - Rubrivivax ge... 104 3e-21
sp|P44083|YBJF_HAEIN HYPOTHETICAL RNA METHYLTRANSFERASE HI0958 >... 101 1e-20
sp|Q9Z721|Y885_CHLPN HYPOTHETICAL RNA METHYLTRANSFERASE CPN0885 ... 101 2e-20
gb|AAF73721.1| (AE002256) RNA methyltransferase, TrmA family [Ch... 101 2e-20
pir||E82569 RNA methyltransferase XF2358 [imported] - Xylella fa... 101 2e-20
sp|P75817|YBJF_ECOLI HYPOTHETICAL RNA METHYLTRANSFERASE IN POTI-... 99 8e-20
dbj|BAB12711.1| (AP002746) putative RNA methyltransferase [Oryza... 96 6e-19
sp|P55136|YGCA_VIBSS HYPOTHETICAL RNA METHYLTRANSFERASE IN RELA ... 88 2e-16
pir||T34574 hypothetical protein SC10A5.06 SC10A5.06 - Streptomy... 87 4e-16
emb|CAB95525.1| (AL359782) possible protein htf9c [Trypanosoma b... 85 2e-15
sp|P23003|TRMA_ECOLI TRNA (URACIL-5-)-METHYLTRANSFERASE (TRNA(M-... 80 5e-14
pir||A81055 tRNA (uracil-5-)-methyltransferase NMB1679 [imported... 77 3e-13
pir||H81821 tRNA (uracil-5-)-methyltransferase (EC 2.1.1.35) NMA... 77 4e-13
sp|P31812|TRMA_HAEIN TRNA (URACIL-5-)-METHYLTRANSFERASE (TRNA(M-... 73 5e-12
pir||G81355 tRNA (uracil-5-)-methyltransferase (EC 2.1.1.35) Cj0... 71 2e-11
dbj|BAB14223.1| (AK022749) unnamed protein product [Homo sapiens] 71 3e-11
dbj|BAA88495.1| (AB023289) (uracil-5-)methyltransferase [Pseudom... 70 4e-11
pir||H82357 tRNA (uracil-5-)-methyltransferase VC0154 [imported]... 69 7e-11
pir||B83057 tRNA (uracil-5-)-methyltransferase PA4720 [imported]... 69 7e-11
>pir||C75094 probable RNA methyltransferase PAB0760 - Pyrococcus abyssi (strain
Orsay) >gi|5458568|emb|CAB50056.1| (AJ248286)
hypothetical RNA METHYLTRANSFERASE [Pyrococcus abyssi]
Length = 410
Score = 835 bits (2134), Expect = 0.0
Identities = 410/410 (100%), Positives = 410/410 (100%)
Query: 1 MRGIIKGVSNDGLGVLGEVLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGK 60
MRGIIKGVSNDGLGVLGEVLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGK
Sbjct: 1 MRGIIKGVSNDGLGVLGEVLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGK 60
Query: 61 CRYFGRCGGCLWQGLKYREQLKLKEEIFKRVTGVEAEIKGSPRIWFFRNISNFIVTVNGI 120
CRYFGRCGGCLWQGLKYREQLKLKEEIFKRVTGVEAEIKGSPRIWFFRNISNFIVTVNGI
Sbjct: 61 CRYFGRCGGCLWQGLKYREQLKLKEEIFKRVTGVEAEIKGSPRIWFFRNISNFIVTVNGI 120
Query: 121 GFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKNGDVHYLQVREGKF 180
GFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKNGDVHYLQVREGKF
Sbjct: 121 GFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKNGDVHYLQVREGKF 180
Query: 181 TGEVMINVIAHIPPSGREELTEAFGFADSVYWSLKRDKRDDPKGIPTLIKGNEFIRESIE 240
TGEVMINVIAHIPPSGREELTEAFGFADSVYWSLKRDKRDDPKGIPTLIKGNEFIRESIE
Sbjct: 181 TGEVMINVIAHIPPSGREELTEAFGFADSVYWSLKRDKRDDPKGIPTLIKGNEFIRESIE 240
Query: 241 GLVYLIHPSTFFQTNSYALPILLKAVESFAEGSKVLDLYSGVGTFSLYLAKKGFEVTGVE 300
GLVYLIHPSTFFQTNSYALPILLKAVESFAEGSKVLDLYSGVGTFSLYLAKKGFEVTGVE
Sbjct: 241 GLVYLIHPSTFFQTNSYALPILLKAVESFAEGSKVLDLYSGVGTFSLYLAKKGFEVTGVE 300
Query: 301 VNEESVRVAKKSAEVNSLDVSFIPGRAEDAKLKGYETLIVDPPRKGLKDFSKRIAKEGPE 360
VNEESVRVAKKSAEVNSLDVSFIPGRAEDAKLKGYETLIVDPPRKGLKDFSKRIAKEGPE
Sbjct: 301 VNEESVRVAKKSAEVNSLDVSFIPGRAEDAKLKGYETLIVDPPRKGLKDFSKRIAKEGPE 360
Query: 361 NLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKLRRR 410
NLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKLRRR
Sbjct: 361 NLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKLRRR 410
>pir||G71070 hypothetical protein PH1259 - Pyrococcus horikoshii
>gi|3257678|dbj|BAA30361.1| (AP000005) 412aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 412
Score = 678 bits (1731), Expect = 0.0
Identities = 308/410 (75%), Positives = 366/410 (89%)
Query: 1 MRGIIKGVSNDGLGVLGEVLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGK 60
MRG I ++ +GLGVLG +LVPFAYPGD VEV TRERFG+ IARDFKL+ SP+R+PGK
Sbjct: 3 MRGKITKINENGLGVLGNILVPFAYPGDEVEVTETRERFGKIIARDFKLMTPSPLRIPGK 62
Query: 61 CRYFGRCGGCLWQGLKYREQLKLKEEIFKRVTGVEAEIKGSPRIWFFRNISNFIVTVNGI 120
C +FG+CGGCLWQGL+YREQLKLKEEIFKR+TG+EAEIKGSPRIW+FRNISNFI+TVNGI
Sbjct: 63 CSHFGKCGGCLWQGLRYREQLKLKEEIFKRITGIEAEIKGSPRIWYFRNISNFIITVNGI 122
Query: 121 GFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKNGDVHYLQVREGKF 180
GFKEFGMP+TVV++ ECP+FSERT Y++A+K FLRE+ L PWNW+ GDVHYLQVREGKF
Sbjct: 123 GFKEFGMPKTVVNIRECPIFSERTPKYLKALKDFLRESNLKPWNWREGDVHYLQVREGKF 182
Query: 181 TGEVMINVIAHIPPSGREELTEAFGFADSVYWSLKRDKRDDPKGIPTLIKGNEFIRESIE 240
TGEVM+N+IAH+P + RE L EAF FADS+YWSLK DK+DDP+G PTL+ GNE IRE +E
Sbjct: 183 TGEVMVNIIAHVPLNYREALMEAFNFADSIYWSLKADKKDDPRGFPTLVLGNEVIREKVE 242
Query: 241 GLVYLIHPSTFFQTNSYALPILLKAVESFAEGSKVLDLYSGVGTFSLYLAKKGFEVTGVE 300
G+ YLIHPS FFQTNSYALP+LLK+VE F EGSKVLDLYSG+GT SLYLAK+GFEVTGVE
Sbjct: 243 GITYLIHPSVFFQTNSYALPLLLKSVEKFCEGSKVLDLYSGIGTLSLYLAKRGFEVTGVE 302
Query: 301 VNEESVRVAKKSAEVNSLDVSFIPGRAEDAKLKGYETLIVDPPRKGLKDFSKRIAKEGPE 360
VN SV +AK+SAE+NS++ +FI G+AEDA+L+GYETLIVDPPRKGLK+FS+RI K+GP
Sbjct: 303 VNGTSVEMAKRSAEINSINATFIQGKAEDAELEGYETLIVDPPRKGLKEFSRRIVKKGPN 362
Query: 361 NLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKLRRR 410
LIYVSCNP +F+LDYRNYLS+AYK++DA+LIDMFPHTPH+EAV+KL RR
Sbjct: 363 TLIYVSCNPLRFILDYRNYLSEAYKVDDALLIDMFPHTPHIEAVIKLVRR 412
>pir||C71055 probable RNA methyltransferase - Pyrococcus horikoshii
>gi|3257554|dbj|BAA30237.1| (AP000005) 407aa long
hypothetical RNA methyltransferase [Pyrococcus
horikoshii]
Length = 407
Score = 371 bits (943), Expect = e-102
Identities = 187/411 (45%), Positives = 268/411 (64%), Gaps = 10/411 (2%)
Query: 1 MRGIIKGVSNDGLGVLGEVLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGK 60
MRG++K +++DG GVLG VLVPF+ PGD VE++ + IA +KL+KSSP+RV +
Sbjct: 1 MRGVVKELNDDGFGVLGNVLVPFSAPGDEVEILKIEKVKKAKIASKWKLIKSSPLRVGAR 60
Query: 61 CRYFGRCGGCLWQGLKYREQLKLKEEIFKRVTGVEAEIKGSPRIWFFRNISNFIVTVNGI 120
C+ FGRCGGC Q L Y QL+ K E +R+ GV+ E+ SPRI+ RN + VTV GI
Sbjct: 61 CKVFGRCGGCSLQHLSYDYQLEFKGERIRRLLGVDVEVIPSPRIFGHRNRIDLAVTVEGI 120
Query: 121 GFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKN--GDVHYLQVREG 178
GF+E G +V + ECPVF + ++ I ++ F+ E ++ WN K G + Y+ +REG
Sbjct: 121 GFRERGKWWKIVDIQECPVFGKTSRKAIERLREFIEEERISVWNVKKDEGFLRYMVLREG 180
Query: 179 KFTGEVMINVIAHIPPSGR-EELTEAFGFADSVYWSLKRDKRDDPKGIPTLIKGNEFIRE 237
KFTGEVM+N++ G+ + ++ F FA S+YWS+ R K D G + G EFI E
Sbjct: 181 KFTGEVMVNLVTK---EGKLPDPSKYFDFATSIYWSVNRTKSDVSYGEVESVWGREFITE 237
Query: 238 SIEGLVYLIHPSTFFQTNSYALPILLKAVESFAEGSKVLDLYSGVGTFSLYLAKKGFEVT 297
++ ++YLIHP++FFQTNSY L+K V EG +VLD+YSGVGTF +YLAK+GF+V
Sbjct: 238 KLDDVIYLIHPNSFFQTNSYQAVNLVKKVSELVEGERVLDMYSGVGTFGIYLAKRGFKVV 297
Query: 298 GVEVNEESVRVAKKSAEVNSLDVSFIPGRAEDAKLKGYETLIVDPPRKGLKD-FSKRIAK 356
G + NE ++ +A+K+A++N +D F + ++ G++T+IVDPPR GL K++ +
Sbjct: 298 GFDSNEFAIEMARKNAKINKVDAVFDVATDREVEVNGFDTVIVDPPRVGLHPKLIKKLNR 357
Query: 357 EGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKL 407
E PE ++YVSCNP F D YKI++ V +DMFPHTPH+E V KL
Sbjct: 358 EKPEVIVYVSCNPKTFARDIEKL---EYKIDEIVALDMFPHTPHLELVAKL 405
>pir||H75085 probable RNA methyltransferase PAB0719 - Pyrococcus abyssi (strain
Orsay) >gi|5458501|emb|CAB49989.1| (AJ248286)
hypothetical RNA METHYLTRANSFERASE [Pyrococcus abyssi]
Length = 405
Score = 353 bits (895), Expect = 3e-96
Identities = 181/410 (44%), Positives = 258/410 (62%), Gaps = 9/410 (2%)
Query: 1 MRGIIKGVSNDGLGVLGEVLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGK 60
MRG+I+ +++DG GVL +LVPF+ PGD + V R +A +KLV+SSP+RV +
Sbjct: 1 MRGVIRKLNDDGFGVLKGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPR 60
Query: 61 CRYFGRCGGCLWQGLKYREQLKLKEEIFKRVTGVEAEIKGSPRIWFFRNISNFIVTVNGI 120
C+ FG+CGGC Q L Y QL+ K + KR+ G E E+ SP+I+ RN + +T +GI
Sbjct: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVEVVPSPKIFGHRNRIDLAITKDGI 120
Query: 121 GFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKN--GDVHYLQVREG 178
GF+E G +V +DECPVF + ++ I +K F+ E ++ WN K G + Y+ +REG
Sbjct: 121 GFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREG 180
Query: 179 KFTGEVMINVIAHIPPSGREELTEAFGFADSVYWSLKRDKRDDPKGIPTLIKGNEFIRES 238
KFT EVM+N + + T F F DS+YWS+ R K D G G EFIRE
Sbjct: 181 KFTEEVMVNFVTK--EGNLPDPTNYFDF-DSIYWSVNRSKSDVSYGDIERFWGKEFIRER 237
Query: 239 IEGLVYLIHPSTFFQTNSYALPILLKAVESFAEGSKVLDLYSGVGTFSLYLAKKGFEVTG 298
++ + YLIHP++FFQTNSY L++ V EG K+LD+YSGVGTF +YLAK+GF V G
Sbjct: 238 LDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKG 297
Query: 299 VEVNEESVRVAKKSAEVNSLDVSFIPGRAEDAKLKGYETLIVDPPRKGLKD-FSKRIAKE 357
+ NE ++ +A+++ E+N++D F + +KG++T+IVDPPR GL KR+ +E
Sbjct: 298 FDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGLHPRLVKRLNRE 357
Query: 358 GPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKL 407
P ++YVSCNP F D + Y+I++ V +DMFPHTPHVE V KL
Sbjct: 358 KPGVIVYVSCNPETFARDVK---MLDYRIDEIVALDMFPHTPHVELVAKL 404
>dbj|BAB04406.1| (AP001509) RNA methyltransferase [Bacillus halodurans]
Length = 458
Score = 171 bits (429), Expect = 1e-41
Identities = 128/442 (28%), Positives = 215/442 (47%), Gaps = 44/442 (9%)
Query: 5 IKGVSNDGLGVLG----EVLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGK 60
I+ +++DG GV + +P A PG+ ++ + + G R ++++SP RV
Sbjct: 18 IEDLTHDGAGVAKVDGYALFIPKALPGERLKAKVVKVKKGYGFGRVLNMIEASPDRVEAP 77
Query: 61 CRYFGRCGGCLWQGLKYREQLKLKE----EIFKRVTGVEAEIK----GSPRIWFFRNISN 112
C F +CGGC Q + Y QL+ K+ ++ +R+ + A G W +RN +
Sbjct: 78 CPVFNQCGGCQLQHMSYDAQLRYKQKQVQDVLERIGKITAVTVRPTIGMNEPWRYRNKAQ 137
Query: 113 FIVTVNGIGFKEFGM--------PRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWN 164
V G +E G+ ++ +DEC + E IR +K RE G+ ++
Sbjct: 138 VPV-----GEREGGLIAGFYQERSHRIIDMDECMIQHEENDKVIRQVKELARELGIRGYD 192
Query: 165 WKN--GDVHYLQVREGKFTGEVMINVIAH---IPPSGR--EELTEAFGFADSVYWSLKRD 217
+ G + ++ R GK TGE+M+ +I +P E + +A S+ ++
Sbjct: 193 EEKHRGTLRHVVARYGKNTGEIMVVLITRGEELPHKKTLIERIHKAIPHVKSIVQNVNPK 252
Query: 218 KRDDPKGIPT-LIKGNEFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESFAE--GSK 274
+ + G T ++ G E+I ++I + + I +F+Q N +L FA GS+
Sbjct: 253 RTNVIFGDKTKVLWGEEYIYDTIGDIKFAISARSFYQVNPEQTKVLYDQALEFANLTGSE 312
Query: 275 -VLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSL-DVSFIPGRAEDAKL 332
V+D Y G+GT SL+LA++ V GVE+ E++ AK++A +N +V F G AE
Sbjct: 313 TVIDAYCGIGTISLFLAQQAKHVYGVEIVPEAISDAKRNARLNGFANVQFAVGDAEKVMP 372
Query: 333 KGY------ETLIVDPPRKGLKD-FSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYK 385
Y + ++VDPPRKG + K I P+ ++YVSCNP+ D R Y+
Sbjct: 373 WWYAQGVRADVIVVDPPRKGCDEALLKTILNMKPDRVVYVSCNPATLARDLRVLEDGGYE 432
Query: 386 IEDAVLIDMFPHTPHVEAVVKL 407
+D +DMFP T H+E+V L
Sbjct: 433 TKDVQPVDMFPWTTHIESVAVL 454
>pir||E69793 RNA methyltransferase homolog yefA - Bacillus subtilis
>gi|2632987|emb|CAB12493.1| (Z99107) alternate gene
name: yerS~similar to RNA methyltransferase [Bacillus
subtilis]
Length = 459
Score = 166 bits (416), Expect = 4e-40
Identities = 127/442 (28%), Positives = 212/442 (47%), Gaps = 46/442 (10%)
Query: 8 VSNDGLGVLG----EVLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGKCRY 63
++++G GV + VP A P + ++ TR + G R +L + SP R C
Sbjct: 20 LTHEGAGVAKVQGFPIFVPNALPEEKAQIKVTRVKKGFAFGRLIELKEESPHRTDAPCPI 79
Query: 64 FGRCGGCLWQGLKYREQLKLKE----EIFKRVTGVE-AEIKGSPRI-----WFFRNISNF 113
+ +CGGC Q + Y QL K+ ++ +R+ ++ +++ P + W +RN +
Sbjct: 80 YKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSKVTVHPTLGMEDPWNYRNKAQV 139
Query: 114 IVTVNGIGFKEFGM--------PRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNW 165
V G +E G+ ++ + C + + ++A+K G+ +N
Sbjct: 140 PV-----GEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNE 194
Query: 166 KN--GDVHYLQVREGKFTGEVMINVIAH---IPPSGR--EELTEAFGFADSVYWSLKRDK 218
+ G + ++ VR G TGE+MI I P + E++T F S+ ++ +K
Sbjct: 195 ERHKGWLRHIMVRYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQFPHVKSIVQNINPNK 254
Query: 219 RDDPKGIPT-LIKGNEFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESFAE---GSK 274
+ G T +I G E+I + I + + I +F+Q N +L +AE
Sbjct: 255 TNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEYAELQGEET 314
Query: 275 VLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVN-SLDVSFIPGRAEDAKLK 333
V+D Y G+GT SL+LAK+ +V GVE+ E++ AK++AE+N + + F G AE K
Sbjct: 315 VIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGNTNAEFAVGEAETVIPK 374
Query: 334 GYE------TLIVDPPRKGLKD-FSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKI 386
YE TL+VDPPRKG + + I + P+ ++YVSCNP D R Y
Sbjct: 375 WYEEGITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDLRVLEDGGYVT 434
Query: 387 EDAVLIDMFPHTPHVEAVVKLR 408
+ +DMFPHT HVE V ++
Sbjct: 435 REVQPVDMFPHTNHVECCVLIK 456
>pir||E72298 hypothetical protein TM1094 - Thermotoga maritima (strain MSB8)
>gi|4981638|gb|AAD36170.1|AE001768_19 (AE001768) RNA
methyltransferase, putative [Thermotoga maritima]
Length = 439
Score = 164 bits (411), Expect = 2e-39
Identities = 126/411 (30%), Positives = 200/411 (48%), Gaps = 24/411 (5%)
Query: 19 VLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGKCRYFGRCGGCLWQGLKYR 78
VLV AYPG+ V + + RE+ + + L+K S R+ CRYFGRCGGC W +KY
Sbjct: 26 VLVEGAYPGEEVLIKTYREKRDFSFGKVVSLLKESEDRIKPPCRYFGRCGGCHWMDVKYE 85
Query: 79 EQLKLKEEI----FKRVT-GVEAE-IKGSPRIWFFRNISNFIVTVNGIGFKEFGMPRTVV 132
QL+ K+E+ F+R VE E ++ S ++ +R F +G K+ V+
Sbjct: 86 TQLRYKKEVLIDLFERSNLKVEVEDVEPSDLVFHYRTKMEFHFQGRKLGLKKRNSD-FVI 144
Query: 133 SVDECPVFSERTKLYIRAMKRFLRETGLNPWNW--KNGDVHYLQVREGKFTGEVMINVIA 190
+ +C V E T + +K ++ + +NW + G + +L +R T + M+ +
Sbjct: 145 DIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNWETRKGVLKHLVIRYAFSTDQFMVIFVT 204
Query: 191 HIP--PSGRE---ELTEAFGFADSVYWSLKRDKRDDPKGIPTLIKGNEFIRESIEGLVYL 245
P GR+ + + F S+ + +G + G I E + +
Sbjct: 205 KTESFPWGRDLVRAVLKRFPKIHSIIHVMNSKDSVVLRGPYKTLYGEGVIVEEFDWERFQ 264
Query: 246 IHPSTFFQTNSYALPILLKAV--ESFAEGSK-VLDLYSGVGTFSLYLAKKGFEVTGVEVN 302
I P+ FFQ+N L+ V E +G++ VLDLY+G+GTFS+ + V VE +
Sbjct: 265 IPPTAFFQSNYSITSKLIDHVYREQALQGNEVVLDLYAGIGTFSVRTSFSAARVISVESS 324
Query: 303 EESVRVAKKSAEVNS-LDVSFIPGRAEDAKLKGY----ETLIVDPPRKGL-KDFSKRIAK 356
+V+ K +A +NS ++ ++ D LK Y + +I+DPPR G + K IA+
Sbjct: 325 RVAVKAGKANANINSRKNIEYVEQDVLDF-LKNYSGRADRIILDPPRSGAGPEVMKEIAR 383
Query: 357 EGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKL 407
PE ++YVSC+PS V D + + Y I DMFP T HVE V L
Sbjct: 384 LSPERIVYVSCDPSTLVRDLKVLVENGYSIVRVKPFDMFPQTYHVETAVTL 434
>pir||S77558 hypothetical protein sll1967 - Synechocystis sp. (strain PCC 6803)
>gi|1652483|dbj|BAA17405.1| (D90905) hypothetical
protein [Synechocystis sp.]
Length = 463
Score = 157 bits (393), Expect = 2e-37
Identities = 124/429 (28%), Positives = 218/429 (49%), Gaps = 31/429 (7%)
Query: 11 DGLGVLGE--VLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGKCRYFGRCG 68
+G+G E V VP PGD +EV + + +A+ K+++ S R C +CG
Sbjct: 31 EGIGRFNERVVFVPDTAPGDRLEVRLVKVKRNYALAQLLKILEPSVQRTRPSCIVADKCG 90
Query: 69 GCLWQGLKYREQLKLKE----EIFKRVTGVEA----EIKGSPRIWFFRNISNFIVTVNGI 120
GC WQ L Y+ Q++ K+ + +R+ G + SP +RN + + ++ +
Sbjct: 91 GCQWQHLDYQFQVESKQQQIIDALERIGGFTTLPLEPLLQSPASLGYRNKATYPLSRSKT 150
Query: 121 GFKEFGMPR----TVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWN--WKNGDVHYLQ 174
G + G R +V++++CPV +R L + +K+ + G + ++ K G + +L
Sbjct: 151 GQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGWSIYDEEKKQGKLRHLS 210
Query: 175 VREGKFTGEVMINVI-AH--IPPSGRE--ELTEAFGFADSVYWSLKRDKRDDPKGIPT-L 228
+R G+ TGE+++ +I AH +P + E E + + +++ + + G T +
Sbjct: 211 LRIGQRTGEMLLTLISAHKGLPDLEEQAGEWLERYPDLGGICLNIQPEPNNRIFGDETVV 270
Query: 229 IKGNEFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESF--AEGSKVL-DLYSGVGTF 285
I G RE L + + +TFFQ NS A +LL ++ +G+++L D Y+GVGTF
Sbjct: 271 IAGRGICREKFADLSFSLGANTFFQVNSGAAELLLTRLQQALNLQGAELLVDAYAGVGTF 330
Query: 286 SLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSL-DVSFIPGRAEDAKLKGYE---TLIVD 341
+L LA++ + +EVN++SV +++AE+N + +V F+ G E E L++D
Sbjct: 331 TLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTLSEIPDVLLLD 390
Query: 342 PPRKG-LKDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKA-YKIEDAVLIDMFPHTP 399
PPRKG + + I ++ PE + Y+SC P D + ++ Y I D FP T
Sbjct: 391 PPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFLCAEGFYGITWVQGCDFFPQTA 450
Query: 400 HVEAVVKLR 408
HVE V L+
Sbjct: 451 HVECAVILK 459
>dbj|BAA20428.1| (AB004554) orf1; putative [Synechocystis sp.]
Length = 463
Score = 157 bits (393), Expect = 2e-37
Identities = 124/429 (28%), Positives = 218/429 (49%), Gaps = 31/429 (7%)
Query: 11 DGLGVLGE--VLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGKCRYFGRCG 68
+G+G E V VP PGD +EV + + +A+ K+++ S R C +CG
Sbjct: 31 EGIGRFNERVVFVPDTAPGDRLEVRLVKVKRNYALAQLLKILEPSVQRTRPSCIVADKCG 90
Query: 69 GCLWQGLKYREQLKLKE----EIFKRVTGVEA----EIKGSPRIWFFRNISNFIVTVNGI 120
GC WQ L Y+ Q++ K+ + +R+ G + SP +RN + + ++ +
Sbjct: 91 GCQWQHLDYQFQVESKQQQIIDALERIGGFTXLPLEPLLQSPASLGYRNKATYPLSRSKT 150
Query: 121 GFKEFGMPR----TVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWN--WKNGDVHYLQ 174
G + G R +V++++CPV +R L + +K+ + G + ++ K G + +L
Sbjct: 151 GQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGWSIYDEEKKQGKLRHLS 210
Query: 175 VREGKFTGEVMINVI-AH--IPPSGRE--ELTEAFGFADSVYWSLKRDKRDDPKGIPT-L 228
+R G+ TGE+++ +I AH +P + E E + + +++ + + G T +
Sbjct: 211 LRIGQRTGEMLLTLISAHKGLPDLEEQAGEWLERYPDLGGICLNIQPEPNNRIFGDETVV 270
Query: 229 IKGNEFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESF--AEGSKVL-DLYSGVGTF 285
I G RE L + + +TFFQ NS A +LL ++ +G+++L D Y+GVGTF
Sbjct: 271 IAGRGICREKFADLSFSLGANTFFQVNSGAAELLLTRLQQALNLQGAELLVDAYAGVGTF 330
Query: 286 SLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSL-DVSFIPGRAEDAKLKGYE---TLIVD 341
+L LA++ + +EVN++SV +++AE+N + +V F+ G E E L++D
Sbjct: 331 TLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTLSEIPDVLLLD 390
Query: 342 PPRKG-LKDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKA-YKIEDAVLIDMFPHTP 399
PPRKG + + I ++ PE + Y+SC P D + ++ Y I D FP T
Sbjct: 391 PPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFLCAEGFYGITWVQGCDFFPQTA 450
Query: 400 HVEAVVKLR 408
HVE V L+
Sbjct: 451 HVECAVILK 459
>pir||F69806 RNA methyltransferase homolog yfjO - Bacillus subtilis
>gi|2633126|emb|CAB12631.1| (Z99108) similar to RNA
methyltransferase [Bacillus subtilis]
>gi|2780399|dbj|BAA24300.1| (D78509) YfjO [Bacillus
subtilis]
Length = 466
Score = 152 bits (379), Expect = 9e-36
Identities = 134/436 (30%), Positives = 209/436 (47%), Gaps = 36/436 (8%)
Query: 7 GVSNDGLGVLGE--VLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGKCRYF 64
G++ +G+G + V VP A PG+ V V +T+ + + R K+ K+S RV C +
Sbjct: 26 GINGEGVGYFKKKVVFVPGALPGEEVVVQATKVQPKFSEGRIKKIRKASEHRVAPPCPVY 85
Query: 65 GRCGGCLWQGLKYREQLKLKEEI----------FKRVTGVEAEIKGSPRIWFFRNISNFI 114
+CGGC Q L Y +QL+ K +I FK E G W +RN S F
Sbjct: 86 EQCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYRNKSQFQ 145
Query: 115 VTVNGIGFKEFGM----PRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWN--WKNG 168
+ + G G+ +V + +C V T ++R L + ++ +N + G
Sbjct: 146 IGRSQSGSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFNVSVYNERKRKG 205
Query: 169 DVHYLQVREGKFTGEV-MINVIAHIPPSGREELTEA----FGFADSVYWSLKRDKRDDPK 223
DV + R G TGEV ++ V A +EE+ +A S+ ++ K
Sbjct: 206 DVRTIVTRVGFETGEVQVVLVTAKETLPHKEEIVKAIQKRLPEVKSIIQNVNGAKTSVIF 265
Query: 224 GIPT-LIKGNEFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESFAE---GSKVLDLY 279
G T + G I+E + + + + FFQ N L V+ A+ KV+D Y
Sbjct: 266 GEKTKQLAGKTVIQEVLGDVSFELSARAFFQLNPEQTVKLYDEVKKAAQLTGKEKVVDAY 325
Query: 280 SGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSL-DVSFIPGRAEDAKLK----G 334
GVGT +++A EV G++V +ES+ AKK+A+ + + + +++ G AE K G
Sbjct: 326 CGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMANATYVTGTAEHWLPKWTKEG 385
Query: 335 Y--ETLIVDPPRKGL-KDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVL 391
+ + +IVDPPR G F I K P+ +YVSCNPS D + LSK Y+++
Sbjct: 386 FRPDVVIVDPPRTGCDSTFLDTIKKVKPKRFVYVSCNPSTLAKDLQT-LSKDYRVDYIQP 444
Query: 392 IDMFPHTPHVEAVVKL 407
+DMFP T HVEAV +L
Sbjct: 445 VDMFPQTAHVEAVARL 460
>dbj|BAB04616.1| (AP001510) RNA methyltransferase [Bacillus halodurans]
Length = 463
Score = 143 bits (358), Expect = 3e-33
Identities = 126/438 (28%), Positives = 199/438 (44%), Gaps = 40/438 (9%)
Query: 7 GVSNDGLGVLGE--VLVPFAYPGD--VVEVISTRERFGRTIARDFKLVKSSPIRVPGKCR 62
G++ +G+G V VP A PG+ VVEV + RF R K+ KSSP R+ C
Sbjct: 24 GINGEGVGYFKRHVVFVPGALPGEEVVVEVTDVKPRFAEASIR--KIRKSSPDRISPPCP 81
Query: 63 YFGRCGGCLWQGLKYREQLKLKEEI----FKRVTGVEAEIK------GSPRIWFFRNISN 112
+ +CGGC Q L Y LK K EI F+R T + A+ G W +RN S
Sbjct: 82 VYDQCGGCQLQHLSYEATLKEKREIVKQAFERHTTLRADTLTILPTIGMEDPWAYRNKSQ 141
Query: 113 FIVTVNGIGFKEFGM----PRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKN- 167
+ G + G+ +V + C V + T +K+ +++ + +N +
Sbjct: 142 LQLKTEK-GQVKAGLYVMNTHKLVDLSSCLVQHDATNEASEVVKQIVQDLQIPTYNERKR 200
Query: 168 -GDVHYLQVREGKFTGEVMINVIAHIPPSGR-----EELTEAFGFADSVYWSLKRDKRDD 221
G + + R G TGE+ + ++ + EE+ S+ ++ K
Sbjct: 201 TGILRSVVSRVGFETGELQVILVTTKKDFPKKDLLVEEIKSRLPHVKSLQQNINPKKTSL 260
Query: 222 PKGIPTL-IKGNEFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESFAE---GSKVLD 277
G T+ + G E I E++ + + + FFQ N L V+ A KV+D
Sbjct: 261 IMGDETISLFGEETIEETLGDISFSLSARAFFQLNPKQTVKLYNEVKRAAALTGKEKVID 320
Query: 278 LYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSL-DVSFIPGRAEDAKLKGY- 335
Y GVGT L+LA + EV G++V E++ AK++A+ + +V + G+AE
Sbjct: 321 AYCGVGTIGLWLADQAREVRGMDVIAEAIEDAKENAKRQGITNVQYEVGKAEKIIPSWVR 380
Query: 336 -----ETLIVDPPRKGLKD-FSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDA 389
+ ++VDPPR G D K I + P+ ++YVSCNPS D YK+++
Sbjct: 381 SSWIPDVIVVDPPRTGCDDQLLKTIKQTKPKRIVYVSCNPSTLAKDVEQLQRSGYKVKNI 440
Query: 390 VLIDMFPHTPHVEAVVKL 407
+DMFP T VE+ L
Sbjct: 441 QPVDMFPWTAQVESCTLL 458
>pir||E70323 RNA methyltransferase (TrmA-family) - Aquifex aeolicus
>gi|2982968|gb|AAC06582.1| (AE000681) RNA
methyltransferase (TrmA-family) [Aquifex aeolicus]
Length = 425
Score = 138 bits (343), Expect = 2e-31
Identities = 121/414 (29%), Positives = 192/414 (46%), Gaps = 45/414 (10%)
Query: 19 VLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGKCRYFGRCGGCLWQGLKYR 78
V V FA P ++VE +E+ T A K++ SSP R C Y+G CGGC Q L Y
Sbjct: 28 VFVRFASPKELVEAKVVKEKKDYTEAVVTKVLISSPARRKAPCPYYGECGGCQIQHLNYE 87
Query: 79 EQLKLKEEIFKRVTGVEAEIKGSP--------RIWFFRNISNFIVTVNGIGFKEFGMPRT 130
EQL+ K++I +IK P + + +R F + N +GF + + +
Sbjct: 88 EQLRSKKDILLESLERIGKIKEVPYEGEIPSKKEFNYRVRVQFKIQENRVGFYRWDV-KE 146
Query: 131 VVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKNGDVHYLQVREG---KF-----TG 182
VV V+EC + ER I ++ L+ + + V+Y R+ KF T
Sbjct: 147 VVDVEECLLAHERINELIPHIREVLKVIK----DLQEVHVNYSPTRDEATLKFVTITHTD 202
Query: 183 EVMI-NVIAHIPPSGREELTEAFGFADSVYWSL-KRDKRDDPKGIPTLIKGNEFIRESIE 240
E ++ N++ ++ P E G V SL KR K G E I +
Sbjct: 203 EKLLQNILENVLP----EWVVGIGDYGKVGNSLVKRYK-----------VGREHIFMDVG 247
Query: 241 GLVYLIHPSTFFQTNSYALPILLKAVESFAEG-SKVLDLYSGVGTFSLYLAKKGFEVTGV 299
Y + +FFQ N LK V F+E K LDL+ GVG F++ L+++G + G
Sbjct: 248 KWQYRVSNDSFFQVNYTLWEDFLKEVLDFSESYKKGLDLHCGVGFFTIPLSEQGNFIEGA 307
Query: 300 EVNEESVRVAKKSAEVNSLDVSFIPGRAEDAKLKG-----YETLIVDPPRKGL-KDFSKR 353
+ N +++ A+ +A++N+ D LK ++VDPPR GL ++
Sbjct: 308 DANPSAIKDAEYNAKINNRDNVIFEEATAFKHLKRRIGEVINLVVVDPPRSGLLREERDL 367
Query: 354 IAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKL 407
+ K P+ ++Y+SCNP+ F D + Y+++ LID FP T H+E++ L
Sbjct: 368 LLKNKPDKIVYISCNPTTFARDLKILTKGGYELKRLKLIDNFPQTYHIESIALL 421
>dbj|BAB01724.1| (AB023045) RNA methyltransferase-like protein [Arabidopsis
thaliana]
Length = 554
Score = 123 bits (305), Expect = 5e-27
Identities = 132/475 (27%), Positives = 204/475 (42%), Gaps = 81/475 (17%)
Query: 6 KGVSN-DGLGVLGEVLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGKCRYF 64
KG+ DG G + V+ A PG+ TR + K + V C Y
Sbjct: 85 KGICKVDGTGYV--VMCDRALPGERFLGRVTRRKGSYAEVTKMKTISPHKDLVEAPCEYA 142
Query: 65 GRCGGCLWQGLKYREQLKLKEE---------------------IFKRVTGVEA------- 96
CGGC Q L Y QL+ KEE + K + +
Sbjct: 143 SYCGGCKTQNLSYEAQLRAKEEQVHELIRHVGRFSDNNPGLEIVLKPIVACDIQFHYRNK 202
Query: 97 -EIKGSPRIWFFRNI--------SNFIVTVNGIGFKEFGMPRTVVSVDECPVFSERTKLY 147
E P+ W + NF + ++ GF + V++VD+C + SE L
Sbjct: 203 MEFSFGPQRWLPIEMLNERQDGPKNFALGLHAPGFFD-----KVLNVDKCLLQSEPGNLV 257
Query: 148 IRAMKRFLR--ETGLNPWNWKN--GDVHYLQVREGKF--TG--EVMIN-VIAHIPPSGRE 198
+ A++ R E L+P++ ++ G + +L +R G+ TG E+M+N V + P +
Sbjct: 258 LAAVQDCWRDPELSLSPYDCRSHVGFLKHLMLRTGRNVETGSLELMVNFVTSSYKPELLK 317
Query: 199 ELTEAFGFADSVYWSLKRDKRDDPKGIPT-----LIKGNEFIRESIEGLVYLIHPSTFFQ 253
L + V S+ + + G + I E + GL + I ++FFQ
Sbjct: 318 PLVDRISSIPQVV-SIMNNVNSSVGNTSVGEKEYTLYGKDTITEVLRGLTFQISANSFFQ 376
Query: 254 TNSYALPILLKAVESFA----EGSKV-LDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRV 308
TN++ +L K +E A +GS+V LDL+ G GT L LA++ V G EV +++
Sbjct: 377 TNTHQAEVLYKLIEESAGLKGDGSEVVLDLFCGTGTIGLTLARRAKHVYGYEVVPQAITD 436
Query: 309 AKKSAEVNSLD-VSFIPGR----AED--AKLKGYETLIVDPPRKGL-KDFSKRIAKEGPE 360
A K+A++N ++ +FI G ED + +I DP R G+ K + K
Sbjct: 437 AHKNAQINGIENATFIQGDLNKIGEDFGNNFPKPDIVISDPNRPGMHMKLIKFLLKLKSP 496
Query: 361 NLIYVSCNPSKFV--LDY------RNYLSKAYKIEDAVLIDMFPHTPHVEAVVKL 407
+IYVSCNP+ LDY L YK+ +DMFPHTPH+E V L
Sbjct: 497 RIIYVSCNPATCARDLDYLCHGVEEKNLKGCYKLMSVQPVDMFPHTPHIECVCLL 551
>sp|P55137|Y742_CHLTR HYPOTHETICAL RNA METHYLTRANSFERASE CT742 (PROTEIN HOM1)
>gi|6578112|gb|AAC68337.2| (AE001345) rRNA
Methyltransferse [Chlamydia trachomatis]
Length = 396
Score = 121 bits (300), Expect = 2e-26
Identities = 104/396 (26%), Positives = 177/396 (44%), Gaps = 56/396 (14%)
Query: 61 CRYFGRCGGCLWQGLKYREQLKLKEEIFKRV-------TGVEAEIKGSPRIWFFRNIS-N 112
C++FG CGGC ++Y LK KE + + I SP + + +
Sbjct: 8 CKHFGVCGGCSSPQMEYASSLKTKELALHNLFAPLIPSQNILPVIPCSPLLRGRNKMEFS 67
Query: 113 FIVTVNG---IGFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLR-----ETGLNPWN 164
F TV+G +GF P+ + + EC + ER + + + P N
Sbjct: 68 FYQTVDGEKTLGFISPSKPKKGIPITECLMIDERAMDILNITRSWWTAHPDLSAYYPPLN 127
Query: 165 WKNGDVHYLQVREGKFTGEVMINVIAHIPPSGREELTEAFGFAD--------------SV 210
G + + VR G + + MI + SGREE S+
Sbjct: 128 --KGSLCTITVRVGNISNDFMIILTT----SGREEFAVPLNIIQEWQQSLLDSGLPITSI 181
Query: 211 YWSLKRDKRDDPKGIPTL-IKGNEFIRE--SIEGLVYLIH--PSTFFQTNSYALPILLKA 265
+W K R+ P T + G F+++ SI+G L H P +FFQ S +++
Sbjct: 182 FWEEKLSARNSPTTFRTTHLYGAPFLKQQLSIDGRSSLFHIRPRSFFQPQSLQAEKIIQT 241
Query: 266 VESFAEG---SKVLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSLDVSF 322
++ F + +LDLY G G + LA ++ GVE+ ++V A+++ ++NS+D+
Sbjct: 242 IKEFIDPCGEETLLDLYCGAGIIGILLAPYVKKIIGVELVPDAVASAQENIQLNSVDMEV 301
Query: 323 IPGRAEDAK--------LKGYETLIVDPPRKGLKDFS-KRIAKEGPENLIYVSCNPSKFV 373
EDAK L + +++DPPR G+++ + K + + P+ ++YVSCNP +
Sbjct: 302 F---LEDAKQFCKRNENLPSPDIVVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQI 358
Query: 374 LDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKLRR 409
+ + + Y++ ID FPHT H+E +V L R
Sbjct: 359 QECSVLVEQGYQLRRMQPIDQFPHTNHLENIVLLER 394
>pir||H71476 probable rRNA methyltransferse - Chlamydia trachomatis (serotype
D, strain UW3/Cx)
Length = 430
Score = 121 bits (300), Expect = 2e-26
Identities = 104/396 (26%), Positives = 177/396 (44%), Gaps = 56/396 (14%)
Query: 61 CRYFGRCGGCLWQGLKYREQLKLKEEIFKRV-------TGVEAEIKGSPRIWFFRNIS-N 112
C++FG CGGC ++Y LK KE + + I SP + + +
Sbjct: 42 CKHFGVCGGCSSPQMEYASSLKTKELALHNLFAPLIPSQNILPVIPCSPLLRGRNKMEFS 101
Query: 113 FIVTVNG---IGFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLR-----ETGLNPWN 164
F TV+G +GF P+ + + EC + ER + + + P N
Sbjct: 102 FYQTVDGEKTLGFISPSKPKKGIPITECLMIDERAMDILNITRSWWTAHPDLSAYYPPLN 161
Query: 165 WKNGDVHYLQVREGKFTGEVMINVIAHIPPSGREELTEAFGFAD--------------SV 210
G + + VR G + + MI + SGREE S+
Sbjct: 162 --KGSLCTITVRVGNISNDFMIILTT----SGREEFAVPLNIIQEWQQSLLDSGLPITSI 215
Query: 211 YWSLKRDKRDDPKGIPTL-IKGNEFIRE--SIEGLVYLIH--PSTFFQTNSYALPILLKA 265
+W K R+ P T + G F+++ SI+G L H P +FFQ S +++
Sbjct: 216 FWEEKLSARNSPTTFRTTHLYGAPFLKQQLSIDGRSSLFHIRPRSFFQPQSLQAEKIIQT 275
Query: 266 VESFAEG---SKVLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSLDVSF 322
++ F + +LDLY G G + LA ++ GVE+ ++V A+++ ++NS+D+
Sbjct: 276 IKEFIDPCGEETLLDLYCGAGIIGILLAPYVKKIIGVELVPDAVASAQENIQLNSVDMEV 335
Query: 323 IPGRAEDAK--------LKGYETLIVDPPRKGLKDFS-KRIAKEGPENLIYVSCNPSKFV 373
EDAK L + +++DPPR G+++ + K + + P+ ++YVSCNP +
Sbjct: 336 F---LEDAKQFCKRNENLPSPDIVVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQI 392
Query: 374 LDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKLRR 409
+ + + Y++ ID FPHT H+E +V L R
Sbjct: 393 QECSVLVEQGYQLRRMQPIDQFPHTNHLENIVLLER 428
>pir||B83530 probable RNA methyltransferase PA0933 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946837|gb|AAG04322.1|AE004527_9 (AE004527) probable
RNA methyltransferase [Pseudomonas aeruginosa]
Length = 450
Score = 118 bits (293), Expect = 1e-25
Identities = 111/428 (25%), Positives = 186/428 (42%), Gaps = 42/428 (9%)
Query: 5 IKGVSNDGLGVLGEV----LVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGK 60
I+ +++DG G+ E V PG+ +E R AR +L SS +R
Sbjct: 31 IERLAHDGRGIAHEAGMTWFVSGGLPGEELEARVLGARSKVVDARSERLFSSSDLRRREP 90
Query: 61 CRYFGRCGGCLWQGLKYREQLKLKE----EIFKRVTGVEAEIKGSPRI---WFFRNISNF 113
C GRCGGC Q L++ EQL LK+ E +R G+E E +P + + +R +
Sbjct: 91 CTVAGRCGGCTLQHLEHGEQLALKQRTLQEQLQRFAGIEPEEWAAPLVGPEFGYRRRARI 150
Query: 114 IVTVNG------IGFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKN 167
V + +GF+ + +V+ DEC V + RA+ L++ K
Sbjct: 151 AVRWDARARRLDVGFRA-SASQEIVAFDECLVLVPPLQTIARALPALLQDFR------KP 203
Query: 168 GDVHYLQVREGKFTGEVMINVIAHIPPSGREELTEAFGFADSVYWSLKRDKRDDPKGIPT 227
+ ++++ F G ++ H E+ F + L + P +
Sbjct: 204 ESIGHVEL----FHGTASALLLRHTTALVDEDRQRLAAFCSAHQAQLWLQGAEQPLPVEP 259
Query: 228 LIKGNEFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESF---AEGSKVLDLYSGVGT 284
+ + + L Y P F Q N+ +++ + +VLDL+ G+G
Sbjct: 260 AAELGYSLGDWQLTLAY--RPGDFVQVNAPVNESMIRQALDWLAPTADERVLDLFCGLGN 317
Query: 285 FSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSL--------DVSFIPGRAEDAKLKGYE 336
FSL LA++ V GVE V A +A N L D+S A A+ +G+
Sbjct: 318 FSLPLARRVARVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKALAEAPWAE-QGFT 376
Query: 337 TLIVDPPRKGLKDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFP 396
+++DPPR G + + ++ G ++YVSCNP+ D + Y+++ A ++DMFP
Sbjct: 377 AVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDMFP 436
Query: 397 HTPHVEAV 404
T HVEA+
Sbjct: 437 QTAHVEAM 444
>sp|P55135|YGCA_ECOLI HYPOTHETICAL RNA METHYLTRANSFERASE IN RELA-BARA INTERGENIC REGION
>gi|7449341|pir||E65060 ygcA protein - Escherichia coli
(strain K-12) >gi|882679|gb|AAA69295.1| (U29580)
alternate gene name ygcA; ORF_f433 [Escherichia coli]
>gi|1789148|gb|AAC75827.1| (AE000362) putative enzyme
[Escherichia coli K12]
Length = 433
Score = 113 bits (279), Expect = 5e-24
Identities = 105/407 (25%), Positives = 179/407 (43%), Gaps = 30/407 (7%)
Query: 19 VLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGKCRYFGRCGGCLWQGLKYR 78
+ +P P + EV T ++ A+ + + SP R +C +FG CGGC Q
Sbjct: 39 LFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVD 98
Query: 79 EQLKLKEEIFKRVTGVEAEIKGSPRIWFFRNIS----NFIVTVNGI--GFKEFGMPRTVV 132
Q + K R+ + + W +R + N++ + GF++ G +V
Sbjct: 99 LQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS-DIV 157
Query: 133 SVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKNGDVHYLQVREGKFTGEVMINVIAHI 192
V +CP+ + + + + ++ L G G V +Q G +++ A +
Sbjct: 158 DVKQCPILAPQLEALLPKVRACL---GSLQAMRHLGHVELVQATSGTL---MILRHTAPL 211
Query: 193 PPSGREELTEAFGFADSVYWSLKRDKRDDPKGIPTLIKGNEFIRESIEGLVYLIHPSTFF 252
+ RE+L E F ++ + L D I + G +S GL P F
Sbjct: 212 SSADREKL-ERFSHSEGLDLYLAPDSE-----ILETVSGEMPWYDS-NGLRLTFSPRDFI 264
Query: 253 QTNSYA-LPILLKAVE--SFAEGSKVLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVA 309
Q N+ ++ +A+E +VLDL+ G+G F+L LA + V GVE V
Sbjct: 265 QVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKG 324
Query: 310 KKSAEVNSL-DVSFIPGRAEDAKLK------GYETLIVDPPRKGLKDFSKRIAKEGPENL 362
+++A +N L +V+F E+ K G++ +++DP R G ++I K P +
Sbjct: 325 QQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRI 384
Query: 363 IYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKLRR 409
+YVSCNP+ D L Y I ++DMFPHT H+E++V R
Sbjct: 385 VYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431
>emb|CAC01942.1| (AJ250970) tRNA(m5U54)methyltransferase [Saccharomyces cerevisiae]
Length = 569
Score = 111 bits (275), Expect = 1e-23
Identities = 124/462 (26%), Positives = 209/462 (44%), Gaps = 93/462 (20%)
Query: 19 VLVPFAYPGDVV--EVISTRERFGRTIARDFKLVKSSPIRVPGKCR--YFGRCGGCLWQG 74
V++PF PGDVV +V T + + D +V+ SP+R R YFG+ G +
Sbjct: 129 VIIPFGLPGDVVNIKVFKTHPYYVESDLLD--VVEKSPMRRDDLIRDKYFGKSSGSQLEF 186
Query: 75 LKYREQLKLKEEIFKRVTGVEAEIKGSPRIWFFRNISNFIVTVNG--------------- 119
L Y +QL+LK R T + A +PR+ + + F TV
Sbjct: 187 LTYDDQLELK-----RKTIMNAYKFFAPRLVAEKLLPPFDTTVASPLQFGYRTKITPHFD 241
Query: 120 --------------IGFKEFGMPR------------TVVSVDECPVFSE-RTKLYIRAMK 152
+GF + G P+ +++ +DEC + +E K +
Sbjct: 242 MPKRKQKELSVRPPLGFGQKGRPQWRKDTLDIGGHGSILDIDECVLATEVLNKGLTNERR 301
Query: 153 RFLRETGLNPWNWKNGDVHYLQVREGKFTGEVMINVIAHIPPSGREELTEAFGFADS--V 210
+F +E N+K G + +RE ++ P+ E+LTE ++ +
Sbjct: 302 KFEQEFK----NYKKGAT--ILLRENT-------TILDPSKPT-LEQLTEEASRDENGDI 347
Query: 211 YWSLKRDKRDDPKGIPTLIKG-NEFIRESIEGLVYLIHPSTFFQTNSYALPILLKAV--- 266
+ DK+++ + T + + + E ++G + FFQ N+ LPI+ K V
Sbjct: 348 SYVEVEDKKNNVRLAKTCVTNPRQIVTEYVDGYTFNFSAGEFFQNNNSILPIVTKYVRDN 407
Query: 267 -ESFAEGSK-----VLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSLD- 319
++ A+G ++D Y G G FS+ +K +V GVE++ +SV A+K+A+ N ++
Sbjct: 408 LQAPAKGDDNKTKFLVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVEN 467
Query: 320 VSFIPGRAEDAKLKGYET------LIVDPPRKGLKD-FSKRIAKEGPENLIYVSCNPSKF 372
FI G+AE + +T +I+DPPRKG + F K++A P +IY+SCN
Sbjct: 468 CRFIVGKAEKL-FESIDTPSENTSVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQ 526
Query: 373 VLDYRNYLSK-----AYKIEDAVLIDMFPHTPHVEAVVKLRR 409
D +L + A++IE D FP T HVE+V ++R
Sbjct: 527 ARDVEYFLKETENGSAHQIESIRGFDFFPQTHHVESVCIMKR 568
>sp|P44643|YGCA_HAEIN HYPOTHETICAL RNA METHYLTRANSFERASE HI0333 >gi|1074356|pir||C64148
hypothetical protein HI0333 - Haemophilus influenzae
(strain Rd KW20) >gi|1573302|gb|AAC21995.1| (U32718) RNA
methyltransferase, putative [Haemophilus influenzae Rd]
Length = 438
Score = 110 bits (273), Expect = 3e-23
Identities = 103/405 (25%), Positives = 183/405 (44%), Gaps = 40/405 (9%)
Query: 24 AYPGDVVE--VISTRERFGRTIARDFKLVKSSPIRVPGKCRYFGRCGGCLWQGLKYREQL 81
A P + VE ++ + ++G I + +++ SP R+ KC +F RCGGC Q + Q
Sbjct: 44 ALPHEKVECRILEDKRQYGHAIVKKWRV--KSPERLEPKCAHFMRCGGCQGQHIPIEMQR 101
Query: 82 KLKEE-IFKRVTGVEAE-IKGSPRI----WFFRNISNFIVTVNG------IGFKEFGMPR 129
K KE +FKR++ +++E I P I W +R + N +GF++
Sbjct: 102 KAKESALFKRLSKLQSEPISFQPMICGDAWAYRRRVRLSLWFNPSTKQIEMGFRQKNT-N 160
Query: 130 TVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKNGDVHYLQVREGKFTGEVMINVI 189
++ V C V + + L + + G + + G +++
Sbjct: 161 DLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK---QLGHIELVAADNGV---AMLLRYT 214
Query: 190 AHIPPSGREELTEAFGFADSVYWSLKRDKRDDPKGIPTLIKGNEFIRESIEGLVYLIHPS 249
++ R L + F + + L+ DK GI + + + S +G+
Sbjct: 215 KNLAEIDRTLLLK-FAEQEKLMLFLQSDK-----GIEQIYGDAPYYQFS-DGIKLHFDIR 267
Query: 250 TFFQTNSYALPILLKAVESFAEGSK---VLDLYSGVGTFSLYLAKKGFEVTGVEVNEESV 306
F Q NS ++ + E S+ VLDL+ G+G F+L LAK+ G+E E V
Sbjct: 268 DFIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMV 327
Query: 307 RVAKKSAEVNSL-DVSFIPGRAEDAKLK------GYETLIVDPPRKGLKDFSKRIAKEGP 359
+ A ++AE N + ++ F + + ++ + +++DPPR G + +
Sbjct: 328 QKAAQNAERNQIKNIEFFQADLDQSFVEQPWANQSFNKILLDPPRSGAAFALNALCELKA 387
Query: 360 ENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAV 404
E ++YVSCNP+ V D + YKIE + +IDMFPHT H+E++
Sbjct: 388 EKILYVSCNPATLVRDAEILCNFGYKIEKSAVIDMFPHTGHLESI 432
>sp|Q09833|YAD7_SCHPO HYPOTHETICAL 59.6 KD PROTEIN C4G8.07C IN CHROMOSOME I
>gi|2130434|pir||S62484 hypothetical protein SPAC4G8.07c
- fission yeast (Schizosaccharomyces pombe)
>gi|7491148|pir||T38852 hypothetical protein SPAC4G8.07c
- fission yeast (Schizosaccharomyces pombe)
>gi|1022352|emb|CAA91208.1| (Z56276) hypothetical
protein [Schizosaccharomyces pombe]
Length = 527
Score = 110 bits (273), Expect = 3e-23
Identities = 115/448 (25%), Positives = 187/448 (41%), Gaps = 94/448 (20%)
Query: 9 SNDGLGVLGE----VLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPG--KCR 62
S DG+G++ V+VPF PGD+V+ +A +++ S R KC
Sbjct: 124 SGDGIGLVCNDQYAVVVPFTLPGDIVKAKLHFLADTYALADFLEVISPSEDRDDTLIKCP 183
Query: 63 YFGRCGGCLWQGLKYREQLKLKEEIFKRVTGVEAEIK-----------GSPRIWFFRN-- 109
YF +CGGC +Q L Y +QL K+ + ++ +++ GSP + +R
Sbjct: 184 YFAKCGGCQYQMLSYDKQLLQKKRVVEKAFQYYSKLDSSLLPAIKDTVGSPLQYNYRTKI 243
Query: 110 ISNFIVTVNG------IGFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPW 163
+F V G IGF+E G R V+ ++ECP+ TK + + +
Sbjct: 244 TPHFDVPKGGTKGPLIIGFQEKGR-RRVMDIEECPI---ATKTINEEYPKIIED------ 293
Query: 164 NWKNGDVHYLQVREGKFTGEVMINVIAHIPPSGREELTEAFGFADSVYWSLKRDKRDDPK 223
+Q R F I L RD +
Sbjct: 294 ---------VQSRANTFKRGATI---------------------------LMRDSATEDG 317
Query: 224 GIPTLIKGNEFIRESIEGLVYLIHPSTFFQTN--------SYALPILLKAV--ESFAEGS 273
+ +RE L + FFQ N SY LL +
Sbjct: 318 KHCVITDHKMIVREQFGDLSFTFPAGAFFQNNNSILEKFTSYVREQLLNPFGRKEHQRPK 377
Query: 274 KVLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSL-DVSFIPGRAEDAKL 332
+D Y G G FS+ +K V GVE++ +SVR A+++A+ N++ + +FI G+AE
Sbjct: 378 YFVDAYCGSGLFSVACSKGFLSVIGVEISADSVRYAEENAKRNNVSNATFIVGQAEKI-F 436
Query: 333 KGYET------LIVDPPRKGL-KDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLS---- 381
ET +++DPPRKG + F ++ + P ++Y+SCN D LS
Sbjct: 437 SSIETPPNETAMVIDPPRKGCDQSFLNQLLEYSPYRIVYISCNVHTQARDVGFLLSQEKG 496
Query: 382 KAYKIEDAVLIDMFPHTPHVEAVVKLRR 409
++YKI++ D+FP + HVE+++ L +
Sbjct: 497 RSYKIDEIRGFDLFPQSHHVESILTLTK 524
>gi|6680315 HpaII tiny fragments locus 9c [Mus musculus]
>gi|3183977|emb|CAA39515.1| (X56044) protein Htf9C [Mus
musculus]
Length = 677
Score = 109 bits (269), Expect = 8e-23
Identities = 102/361 (28%), Positives = 163/361 (44%), Gaps = 51/361 (14%)
Query: 98 IKGSPRIWFFRNISNFIVTV------NGIGF---KEFGMPRTVVSVDECPVFSERTKLYI 148
+K SP+ +RN F+V V N +G K G V + + E TK +
Sbjct: 284 VKPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVV 343
Query: 149 RAMKRFLRETGLNPWNWKNGDVHYLQVR-EGKFTGEVMINVIAHIPPSGREELT------ 201
+A + F+R T + ++ + H+ Q+ G+ M H EE+
Sbjct: 344 KAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSSRGQAMAIAYFHPQKLSSEEVAGLKASL 403
Query: 202 ---------EAFGFADSVYWSLKRDKRDDPKGIPTL-IKGNEFIRESIEGLVYLIHPSTF 251
+A G + + K +G+P + G++ I+E + GL + I P F
Sbjct: 404 VCHFMEGPGKASGVTSLYFVEEGQRKTPSQEGLPLEHMAGDQCIQEDLLGLTFRISPHAF 463
Query: 252 FQTNSYALPILLKAVESFAE---GSKVLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRV 308
FQ N+ A +L ++ +A+ GS VLD+ G GT L LA K V G+E+ +E+V
Sbjct: 464 FQVNTPAAEVLYTVIQEWAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVED 523
Query: 309 AKKSAEVNSL-DVSFIPGRAED------AKLKGYETL-IVDPPRKGLKDFSKRI----AK 356
A+ +A N L +V F GRAED ++L ++ + ++DPPR GL SK I
Sbjct: 524 ARMNALTNELSNVEFHCGRAEDLVPGLVSRLSSHQLVAVLDPPRAGL--HSKVILAIRKA 581
Query: 357 EGPENLIYVSCNPSKFVLDY--------RNYLSKAYKIEDAVLIDMFPHTPHVEAVVKLR 408
E + L+YVSCNP + ++ + AV +D+FP TPH E ++
Sbjct: 582 ENIKRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFHPVKAVAVDLFPQTPHCEMLILFE 641
Query: 409 R 409
R
Sbjct: 642 R 642
>gb|AAA91052.1| (M94254) pCTHom1 gene product [Chlamydia trachomatis]
Length = 333
Score = 108 bits (268), Expect = 1e-22
Identities = 90/337 (26%), Positives = 155/337 (45%), Gaps = 48/337 (14%)
Query: 112 NFIVTVNG---IGFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLR-----ETGLNPW 163
+F TV+G +GF P+ + + EC + ER + + + P
Sbjct: 4 SFYQTVDGEKTLGFISPSKPKKGIPITECLMIDERAMDILNITRSWWTAHPDLSAYYPPL 63
Query: 164 NWKNGDVHYLQVREGKFTGEVMINVIAHIPPSGREELTEAFGFAD--------------S 209
N G + + VR G + + MI + SGREE S
Sbjct: 64 N--KGSLCTITVRVGNISNDFMIILTT----SGREEFAVPLNIIQEWQQSLLDSGLPITS 117
Query: 210 VYWSLKRDKRDDPKGIPTL-IKGNEFIRE--SIEGLVYLIH--PSTFFQTNSYALPILLK 264
++W K R+ P T + G F+++ SI+G L H P +FFQ S +++
Sbjct: 118 IFWEEKLSARNSPTTFRTTHLYGAPFLKQQLSIDGRSSLFHIRPRSFFQPQSLQAEKIIQ 177
Query: 265 AVESFAEG---SKVLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSLDVS 321
++ F + +LDLY G GT + LA ++ GVE+ ++V A+++ ++NS+D+
Sbjct: 178 TIKEFIDPCGEETLLDLYCGRGTIGILLAPYVKKIIGVELVPDAVASAQENIQLNSVDME 237
Query: 322 FIPGRAEDAK--------LKGYETLIVDPPRKGLKDFS-KRIAKEGPENLIYVSCNPSKF 372
EDAK L + +++DPPR G+++ + K + + P+ ++YVSCNP
Sbjct: 238 VF---LEDAKQFCKRNENLPSPDIVVIDPPRCGMQNKALKYLLRMAPKKIVYVSCNPLTQ 294
Query: 373 VLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKLRR 409
+ + + + Y++ ID FPHT H+E +V L R
Sbjct: 295 IQECSVLVEQGYQLRHMQPIDQFPHTNHLENIVLLER 331
>pir||A82399 probable TrmA family RNA methyltransferase VCA0929 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9658366|gb|AAF96826.1| (AE004420) TrmA family RNA
methyltransferase, putative [Vibrio cholerae]
Length = 375
Score = 108 bits (268), Expect = 1e-22
Identities = 90/379 (23%), Positives = 180/379 (46%), Gaps = 33/379 (8%)
Query: 60 KCRYF--GRCGGCLWQGLKYREQLKLKEEIFKRVTGVEAEIKGSPRIWF----FRNISNF 113
+C +F RC C Y EQ+ K++ + + +++ P + FRN +
Sbjct: 2 QCEFFIQKRCTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVTSADTAFRNKAKM 61
Query: 114 IVTVNG----IGFKEF-GMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNW--K 166
+V +G ++ G P ++V+ CP++ + + + ++ ++R G+ P+N K
Sbjct: 62 VVLGAAHAPILGIEDAQGQPLSLVT---CPLYPQPMQELLAYLENWIRIAGIPPYNKLKK 118
Query: 167 NGDVHYLQVREGKFTGEVMINVIA--HIPPSGREE----LTEAFGFADSVYWSLKRDKRD 220
G++ ++ + + +G+ M+ +A H E L AF + + +++
Sbjct: 119 KGELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMA 178
Query: 221 DPKGIPTL-IKGNEFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESFAEG---SKVL 276
+G + + + + E + +I P +FFQTN L ++ +++
Sbjct: 179 RLEGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMW 238
Query: 277 DLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSLD-VSFI---PGRAEDAKL 332
DL+ GVG F+L+ A VTG+E+ E++ A++SA++ +D +SF + +++
Sbjct: 239 DLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQM 298
Query: 333 KGYETLIVDPPRKGL-KDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVL 391
E ++V+PPR+GL + + ++ P+ ++Y SCNP V D S Y++
Sbjct: 299 SAPELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELSS--YQMIRVQW 356
Query: 392 IDMFPHTPHVEAVVKLRRR 410
DMFPHT H E + L R+
Sbjct: 357 FDMFPHTDHAEVLTLLVRK 375
>gb|AAF49200.2| (AE003518) CG3808 gene product [Drosophila melanogaster]
Length = 642
Score = 108 bits (266), Expect = 2e-22
Identities = 105/367 (28%), Positives = 162/367 (43%), Gaps = 54/367 (14%)
Query: 97 EIKGSPRIWFFRNISNFIVTVNGIGFKEFGMPR--------TVVSVDECPVFSERTKLYI 148
E+ SP + +RN + F V N +G G V V + P E+ K
Sbjct: 212 EVLPSPTVNGYRNKNEFTVGKNSVGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAA 271
Query: 149 RAMKRFLRETGLNPWNWKNGDVHY--LQVREGKFTGEVMINVIAHIPPSGREELTEAFGF 206
R+ + +R++ P+N H+ L VR TGE+M+ + +E E
Sbjct: 272 RSFQDLVRKSKFLPFNPDGNIGHFRQLMVRCSSATGELMLVAGIYSSNLSEDEQVELKQE 331
Query: 207 ADSVYWSLKRDK--------------RDDPKGIPTL--IKGNEFIRESIEGLVYLIHPST 250
S Y L D R+ + I + I G+ I ++I+GL + I P
Sbjct: 332 LKSFYEDLANDAPYKCSSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLA 391
Query: 251 FFQTNSYALPILL-KAVESFA--EGSKVLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVR 307
FFQ N+ +L KA++ A + + +LD+ G GT +L AK +V GVE+ ++++
Sbjct: 392 FFQINTEGANVLYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIK 451
Query: 308 VAKKSAEVNSL-DVSFIPGRAED-AKLKGYETL-------------IVDPPRKGL--KDF 350
A+ +AE N + + F G A+D K E L +VDPPR GL +
Sbjct: 452 DAEFNAEANGIKNAKFFTGNADDFIKSMVREALYDQEPGKPLDLIAVVDPPRAGLHHRSI 511
Query: 351 SKRIAKEGPENLIYVSCNP---SKFVLDYRNYLSKAYKIE-----DAVLIDMFPHTPHVE 402
+ + + L+YVSCNP + ++ SK YK E AV +DMFPHT H E
Sbjct: 512 AAIRSADAINRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTE 571
Query: 403 AVVKLRR 409
V+ R
Sbjct: 572 LVILFER 578
>pir||A82075 probable TrmA family RNA methyltransferase VC2452 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9657029|gb|AAF95594.1| (AE004315) TrmA family RNA
methyltransferase, putative [Vibrio cholerae]
Length = 440
Score = 105 bits (259), Expect = 1e-21
Identities = 98/413 (23%), Positives = 188/413 (44%), Gaps = 46/413 (11%)
Query: 19 VLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGKCRYFGRCGGCLWQGLKYR 78
+ V A PG+ V + T + + K++K S RV C ++ +CGGC Q L
Sbjct: 40 LFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERVAPFCAHYAQCGGCDLQHLDRA 99
Query: 79 EQLKLKEEIFKRV------------TGVEAEIKGSPRIWFFRNISNFIVTVNGIGFKEFG 126
Q+ K++ ++ V ++ +G R + + +GF+
Sbjct: 100 GQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRR-K 158
Query: 127 MPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKNGD-VHYLQVREGKFTGEVM 185
+ +V+V CPV + + L E W + + ++++ +G T ++
Sbjct: 159 QSKAIVNVTHCPVLEPSLNALLPDLNALLSE-------WSQPERLGHVELVKGDNTRVLV 211
Query: 186 INVIAHIPPSGREELTEAFGFAD----SVYWSLKRDKRDDPKGIPTLIKGNEFIRESIEG 241
+ + + ++ LT+ FA ++Y L+ + +G + E+
Sbjct: 212 LRHLGALIEQDQQRLTD---FASQNQLTLYLMLEAGELQHVQGEAP------YCEETGSR 262
Query: 242 LVYLIHPSTFFQTNSYALPILLKAVESFAEGS---KVLDLYSGVGTFSLYLAKKGFEVTG 298
L +L PS F Q N ++ ++ E S +VLDL+ G+G F+L LAK+ V G
Sbjct: 263 LSFL--PSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVG 320
Query: 299 VEVNEESVRVAKKSAEVNSLD-VSFIPGRAEDAKLKG------YETLIVDPPRKGLKDFS 351
VE +E V+ A +A++N ++ V+F E + +++DP R G +
Sbjct: 321 VEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAKVLLDPARAGAEGIV 380
Query: 352 KRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAV 404
+++ G + ++YVSCNP+ D ++ LS+ +++E ++DMFPHT H+E++
Sbjct: 381 DQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESM 433
>dbj|BAB15067.1| (AK025106) unnamed protein product [Homo sapiens]
Length = 475
Score = 104 bits (258), Expect = 1e-21
Identities = 107/361 (29%), Positives = 170/361 (46%), Gaps = 51/361 (14%)
Query: 98 IKGSPRIWFFRNISNFIVTV------NGIGF---KEFGMPRTVVSVDECPVFSERTKLYI 148
++ SP+ +RN F+V V N +G K G V + + E TK +
Sbjct: 80 VRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVV 139
Query: 149 RAMKRFLRETGLNPWNWKNGDVHYLQ--VREGKFTGEVMI----------NVIAHIPPSG 196
+A + F+R T + ++ + H+ Q VR + + I +A + S
Sbjct: 140 KAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRRHQAMAIAYFHPQKLSPEELAELKTSL 199
Query: 197 REELTEAFGFADSV--YWSLKRDKRDDP--KGIPTL-IKGNEFIRESIEGLVYLIHPSTF 251
+ T G A V + ++ +R P +G+P + G+ I E + GL + I P F
Sbjct: 200 AQHFTAGPGRASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAF 259
Query: 252 FQTNSYALPILLKAVESFAE---GSKVLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRV 308
FQ N+ A +L ++ +A+ GS VLD+ G GT L LA+K V GVE+ E+V
Sbjct: 260 FQVNTPAAEVLYTVIQDWAQLDAGSMVLDVCCGTGTIGLALARKVKRVIGVELCPEAVED 319
Query: 309 AKKSAEVNSL-DVSFIPGRAED------AKLKGYETL-IVDPPRKGLKD---FSKRIAKE 357
A+ +A+ N L +V F GRAED ++L + I+DPPR GL + R AK
Sbjct: 320 ARVNAQDNELSNVEFHCGRAEDLVPTLVSRLASQHLVAILDPPRAGLHSKVILAIRRAK- 378
Query: 358 GPENLIYVSCNPSKFVLDYRNYLSKA---------YKIEDAVLIDMFPHTPHVEAVVKLR 408
L+YVSCNP + ++ + L +A ++ AV +D+FP TPH E ++
Sbjct: 379 NLRRLLYVSCNPRAAMGNFVD-LCRAPSNRVKGIPFRPVKAVAVDLFPQTPHCEMLILFE 437
Query: 409 R 409
R
Sbjct: 438 R 438
>pir||T50920 hypothetical protein ygcA [imported] - Rubrivivax gelatinosus
>gi|7416824|dbj|BAA94073.1| (AB034704) similar to YgcA
of Escherichia coli [Rubrivivax gelatinosus]
Length = 473
Score = 104 bits (256), Expect = 3e-21
Identities = 113/431 (26%), Positives = 191/431 (44%), Gaps = 53/431 (12%)
Query: 19 VLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGKCRYFG----RCGGCLWQG 74
V + A PG+ V+V +R + L + S RV C +FG CGGC Q
Sbjct: 29 VFIEGALPGETVQVQVSRRKNQWEQGVLSALARESSQRVRPGCPHFGLHAGACGGCKMQH 88
Query: 75 LKYREQLKLKEEIFKRVTGVEAEIKGSPRI-------WFFR---NISNFIVTVNGI---G 121
L Q+ +K+ + + ++K + W +R +S V G+ G
Sbjct: 89 LHPAAQVAVKQRVLEDNLWHLGKVKPERLLRPIHGPAWGYRWRARLSVRYVPKKGVVLVG 148
Query: 122 FKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKNGDVHYLQVREGKFT 181
F E R V + ECPV + + A++ + + + +++ G
Sbjct: 149 FHE-RKSRYVADMLECPVLPAKVSAMLPALRELIGAME------QRDRLPQIELAAGD-- 199
Query: 182 GEVMINVIAHIPP--SGREELTEAFGFADSVYWSLKRDKRDDPKGIPTLIKGNEFIRESI 239
EV+ V+ H+ P +G AFG V W L+ P+ + L +G + S+
Sbjct: 200 -EVIALVLRHLEPLSAGDAARLRAFGAEHGVQWWLQPK---GPETVHRLDEGGPQLAYSL 255
Query: 240 E--GLVYLIHPSTFFQTNSYALPILL-KAVESFAEG--SKVLDLYSGVGTFSLYLAKKGF 294
G+ P+ F Q N +L+ +AV A +++D + G+G F+L LA++
Sbjct: 256 PEYGVTMPFKPTDFTQVNPQINRVLVDRAVRLLAPQPHERIVDWFCGLGNFTLPLARRAA 315
Query: 295 EVTGVEVNEESVRVAKKSAEVNSL--DVSFIPGR-----AEDAKLKG-YETLIVDPPRKG 346
V G+E +E V+ A+++A N L + SF A++ G + +VDPPR+G
Sbjct: 316 AVHGIEGSETLVQRARENAAANGLAANTSFAARNLFEMSADELMTSGAADAWLVDPPREG 375
Query: 347 LKDFSKRIA----KEG---PENLIYVSCNPSKFVLDYRNYLSKA-YKIEDAVLIDMFPHT 398
+K +A +EG P ++YVSCNP+ D + A ++ A +++MFPHT
Sbjct: 376 AFALAKSLAELRGREGWTPPRRIVYVSCNPATLARDAGLIVHLAGFRCVAAGVVNMFPHT 435
Query: 399 PHVEAVVKLRR 409
HVE++ R
Sbjct: 436 AHVESIAVFER 446
>sp|P44083|YBJF_HAEIN HYPOTHETICAL RNA METHYLTRANSFERASE HI0958 >gi|1074579|pir||B64017
probable RNA methyltransferase HI0958 - Haemophilus
influenzae (strain Rd KW20) >gi|1573984|gb|AAC22619.1|
(U32777) RNA methyltransferase, putative [Haemophilus
influenzae Rd]
Length = 392
Score = 101 bits (250), Expect = 1e-20
Identities = 98/395 (24%), Positives = 171/395 (42%), Gaps = 54/395 (13%)
Query: 61 CRYF--GRCGGCLWQGLKYREQLKLKEEIFKRVTGVEAEIKGSPRIWF---------FRN 109
CRY+ C C W + +QL K+ K+ I W FRN
Sbjct: 4 CRYYQQNECRSCQWLEIPCSQQLTEKQYHLKQQL---ISINYDEAQWVAPFQSNQQGFRN 60
Query: 110 ISNFIVT------VNGIGFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPW 163
+ +V+ + GI K P++ + + +CP++ +K F+ GL P+
Sbjct: 61 KAKMVVSGSVERPILGI-LKNPNDPQSAIDLCDCPLYPTHFSAIFSILKDFIGRAGLVPY 119
Query: 164 NW--KNGDVHYLQVREGKFTGEVMINVIAH----IPPSGRE--ELTEAFGFADSVYWSLK 215
N + G++ Y+ + E T ++M+ + +P RE +L E + + +L+
Sbjct: 120 NIAKQKGELKYILLTESIATEKLMLRFVLRTENKLPLIRRELPKLLEKLPHLEVISINLQ 179
Query: 216 RDKRDDPKGIPTL-IKGNEFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESFAEGSK 274
+G + + +F+ E+ G+ I P FFQTN L + +
Sbjct: 180 PQHAAILEGEQEIFLTEQQFLPENFNGIPLFIRPRGFFQTNPKVAAGLYATAQQWVAEFP 239
Query: 275 VL---DLYSGVGTFSLYLAK-------KGFEVTGVEVNEESVRVAKKSAEV--------N 316
+ DL+ GVG F L+ AK K ++TG+E++ ++ A SA++
Sbjct: 240 IYNLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQ 299
Query: 317 SLDVSFIPGRAEDAKLKGYETLIVDPPRKGL-KDFSKRIAKEGPENLIYVSCNPSKFVLD 375
SLD + + + K + +IV+PPR+G+ K+ S+ + + P ++Y SCN D
Sbjct: 300 SLDAASVIENKNENKP---DLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKD 356
Query: 376 YRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKLRRR 410
++ YK L DMFP T H E +V L R+
Sbjct: 357 LQHLT--CYKPLKIQLFDMFPQTSHYEVLVLLERK 389
>sp|Q9Z721|Y885_CHLPN HYPOTHETICAL RNA METHYLTRANSFERASE CPN0885 >gi|7468543|pir||A72023
rRNA methyltransferse - Chlamydophila pneumoniae (strain
CWL029) >gi|4377204|gb|AAD19023.1| (AE001669) rRNA
Methyltransferse [Chlamydophila pneumoniae CWL029]
Length = 401
Score = 101 bits (248), Expect = 2e-20
Identities = 102/399 (25%), Positives = 172/399 (42%), Gaps = 58/399 (14%)
Query: 61 CRYFGRCGGCLWQGLKYREQLKLKEEIFKRVTG-------VEAEIKGSPRIWFFRNIS-N 112
C +FG CGGC + Y + LK KEE+ ++ + I SP + + +
Sbjct: 7 CPHFGVCGGCSFPQSNYSDSLKKKEELLHQLFAPLVPSDMIAPIIPCSPSLRGRNKMEFS 66
Query: 113 FIVTVNG---IGFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRE-----TGLNPWN 164
F T G +GF P+ + V C + E+T ++ + + + P N
Sbjct: 67 FFQTYEGEKSLGFISSTKPKKGIPVTTCLLIHEQTMDILKLTREWWDKHPELMAYFPPKN 126
Query: 165 WKNGDVHYLQVREGKFTGEVMINVIAHIPPSGREE-----------LTEAFGFADSVYWS 213
G + L VR G M+ + P R L+ + A S+YW
Sbjct: 127 --KGSLCTLTVRTGSPQQNFMVILTTSGTPEYRVNEACIDEWKEILLSSSLNIA-SIYWE 183
Query: 214 LKRDKRDDPKGIPT-----LIKGNEFIRESIE------GLVYLIHPSTFFQTNSYALPIL 262
K R GI T L+ G I++ + + + P +FFQ +
Sbjct: 184 EKVAAR----GISTYYETKLLYGAPSIQQKLSLPSDGNSASFSLRPRSFFQPQITQAAKI 239
Query: 263 LKAVESFA--EGSK-VLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSLD 319
++ + F EGS+ +LDLY G GT + L+ V GVE+ ++V A+++ + N+ +
Sbjct: 240 IETAKEFINPEGSETLLDLYCGAGTIGIMLSPYVKNVIGVEIIPDAVASAQENIKANNKE 299
Query: 320 VSFIPGRAEDAKL--------KGYETLIVDPPRKGLKD-FSKRIAKEGPENLIYVSCNPS 370
+ EDAK K + +I+DPPR G++ K I + G ++Y+SCNP
Sbjct: 300 -DCVEVYLEDAKAFCKRNENCKAPDVIIIDPPRCGMQSKVLKYILRIGSPKIVYISCNPK 358
Query: 371 KFVLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKLRR 409
+ + +S Y+I+ ID FP++ H+E ++ L R
Sbjct: 359 TQFQECADLISGGYRIKKMQPIDQFPYSTHLENIILLER 397
>gb|AAF73721.1| (AE002256) RNA methyltransferase, TrmA family [Chlamydophila
pneumoniae AR39] >gi|8979259|dbj|BAA99093.1| (AP002548)
rRNA methyltransferse [Chlamydophila pneumoniae J138]
Length = 401
Score = 101 bits (248), Expect = 2e-20
Identities = 102/399 (25%), Positives = 172/399 (42%), Gaps = 58/399 (14%)
Query: 61 CRYFGRCGGCLWQGLKYREQLKLKEEIFKRVTG-------VEAEIKGSPRIWFFRNIS-N 112
C +FG CGGC + Y + LK KEE+ ++ + I SP + + +
Sbjct: 7 CPHFGVCGGCSFPQSNYSDSLKKKEELLHQLFAPLVPSDMIAPIIPCSPSLRGRNKMEFS 66
Query: 113 FIVTVNG---IGFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRE-----TGLNPWN 164
F T G +GF P+ + V C + E+T ++ + + + P N
Sbjct: 67 FFQTYEGEKSLGFISSTKPKKGIPVTTCLLIHEQTMDILKLTREWWDKHPELMAYFPPKN 126
Query: 165 WKNGDVHYLQVREGKFTGEVMINVIAHIPPSGREE-----------LTEAFGFADSVYWS 213
G + L VR G M+ + P R L+ + A S+YW
Sbjct: 127 --KGSLCTLTVRTGSPQQNFMVILTTSGTPEYRVNEACIDEWKEILLSSSLNIA-SIYWE 183
Query: 214 LKRDKRDDPKGIPT-----LIKGNEFIRESIE------GLVYLIHPSTFFQTNSYALPIL 262
K R GI T L+ G I++ + + + P +FFQ +
Sbjct: 184 EKVAAR----GISTYYETKLLYGAPSIQQKLSLPSDGNSASFSLRPRSFFQPQITQAAKI 239
Query: 263 LKAVESFA--EGSK-VLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSLD 319
++ + F EGS+ +LDLY G GT + L+ V GVE+ ++V A+++ + N+ +
Sbjct: 240 IETAKEFINPEGSETLLDLYCGAGTIGIMLSPYVKNVIGVEIIPDAVASAQENIKANNKE 299
Query: 320 VSFIPGRAEDAKL--------KGYETLIVDPPRKGLKD-FSKRIAKEGPENLIYVSCNPS 370
+ EDAK K + +I+DPPR G++ K I + G ++Y+SCNP
Sbjct: 300 -DCVEVYLEDAKAFCKRNENCKAPDVIIIDPPRCGMQSKVLKYILRIGSPKIVYISCNPK 358
Query: 371 KFVLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKLRR 409
+ + +S Y+I+ ID FP++ H+E ++ L R
Sbjct: 359 TQFQECADLISGGYRIKKMQPIDQFPYSTHLENIILLER 397
>pir||E82569 RNA methyltransferase XF2358 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9107532|gb|AAF85157.1|AE004045_15
(AE004045) RNA methyltransferase [Xylella fastidiosa]
Length = 443
Score = 101 bits (248), Expect = 2e-20
Identities = 121/444 (27%), Positives = 198/444 (44%), Gaps = 62/444 (13%)
Query: 8 VSNDGLGVL---GE----VLVPFAYPGDVV--EVISTRERFGRTIARDFKLVKSSPIRVP 58
+S+DG GV GE V A PG+VV E ++ F AR +++++SP RV
Sbjct: 19 LSHDGRGVARPHGEGDKVTFVTGALPGEVVIVEPVARNRHFDE--ARVVEVLQASPQRVI 76
Query: 59 GKCRYFGRCGGCLWQGLKYREQLKLKEEIF----KRVTGVEAEIKGSPRI----WFFRNI 110
+C +FG C GC+ Q L Q+ K+ + +R+ V E + P + W +R
Sbjct: 77 PRCSHFGVCSGCVLQHLAEDAQVVSKQRVLLESLERIGRVSPE-RVLPALAAESWGYRRK 135
Query: 111 SNFIVTV------NGIGFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWN 164
F V +GF+E PR V V C + K L T LN +
Sbjct: 136 GRFSVRWVEKKGRTLVGFREHD-PRFVADVSVCHTVVPQV-----GEKIALLATLLNSLD 189
Query: 165 WKNGDVHYLQVREGKFTGEVMINVIAHIPPSGREELTEAFGFADSVYWSLKRDKRDDPKG 224
+ DV ++ G + + + + + R L E FG + L+ + +
Sbjct: 190 GRR-DVPQIEFIAGDAVVALTVRHLQPLSEADRLALIE-FGKEHGIAIFLQSGGVESVR- 246
Query: 225 IPTLIKGNEFI---RESIEGLVYLIHPSTFFQTN--------SYALPILLKAVESFAEGS 273
L+ +E + R + ++ P F Q N ++AL +L G
Sbjct: 247 ---LLWPDEVLLAFRLKPWDVEFVFRPLDFIQINGGLNEKMIAHALDLL-----GAGFGE 298
Query: 274 KVLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSLDVS--FIPGRAEDAK 331
+VLDL+ G+G F+L LA+ EV GVE + V A+++A N L + F+ D +
Sbjct: 299 RVLDLFCGLGNFTLPLARTVDEVVGVEGDIGLVERARENARRNGLGNAEFFVADLTRDQR 358
Query: 332 -----LKGYETLIVDPPRKGLKDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKI 386
+G++ L++DPPR G + K++ + E ++YVSC+P D +++ +
Sbjct: 359 DAPWMRQGFDKLLLDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFV 418
Query: 387 EDAV-LIDMFPHTPHVEAVVKLRR 409
AV +DMFPHT HVE++ R
Sbjct: 419 LRAVGAMDMFPHTAHVESIAVFDR 442
>sp|P75817|YBJF_ECOLI HYPOTHETICAL RNA METHYLTRANSFERASE IN POTI-ARTJ INTERGENIC REGION
>gi|7466849|pir||C64824 probable RNA methyltransferase
ybjF - Escherichia coli >gi|1787083|gb|AAC73946.1|
(AE000187) putative enzyme [Escherichia coli K12]
>gi|4062444|dbj|BAA35573.1| (D90724) Hypothetical RNA
methyltransferase HI0958 (EC 2.1.1.-). [Escherichia
coli]
Length = 375
Score = 99.1 bits (243), Expect = 8e-20
Identities = 99/372 (26%), Positives = 159/372 (42%), Gaps = 37/372 (9%)
Query: 65 GRCGGCLWQGLKYREQLKLKEEIFKRVTG---VE---AEIKGSPRIWFFRNISNFIVTVN 118
GRC C W EQL K K + VE A + G + FRN + +V+
Sbjct: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQ--GFRNKAKMVVS-G 65
Query: 119 GIGFKEFGMPR---TVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNW--KNGDVHYL 173
+ GM T + +CP++ A+K F+ GL P+N K G++ Y+
Sbjct: 66 SVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYI 125
Query: 174 QVREGKFTGEVMINVIAHIPPSGREELTEAFGFADSVYWSLKRDKRDDPKGIPTLIKGN- 232
+ E + G +M+ + + +L +A + LK + +++G
Sbjct: 126 LLTESQSDGGMMLRFVLR-SDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGET 184
Query: 233 -------EFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESFAEGSKVL---DLYSGV 282
+ + E + I P +FFQTN L + V DL+ GV
Sbjct: 185 EIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGV 244
Query: 283 GTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSLDVSFIPGRAED----AKLKG--YE 336
G F L+ A ++TG+E+ E++ AK+SA L ++ + +A D A +G E
Sbjct: 245 GGFGLHCATPDMQLTGIEIASEAIACAKQSAA--ELGLTRLQFQALDSTQFATAQGDVPE 302
Query: 337 TLIVDPPRKGL-KDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMF 395
++V+PPR+G+ K ++ P +IY SCN D R ++IE L DMF
Sbjct: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMF 360
Query: 396 PHTPHVEAVVKL 407
PHT H E + L
Sbjct: 361 PHTAHYEVLTLL 372
>dbj|BAB12711.1| (AP002746) putative RNA methyltransferase [Oryza sativa]
>gi|10934074|dbj|BAB16852.1| (AP002537) putative RNA
methyltransferase [Oryza sativa]
Length = 557
Score = 96.3 bits (236), Expect = 6e-19
Identities = 91/325 (28%), Positives = 154/325 (47%), Gaps = 40/325 (12%)
Query: 120 IGFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRET--GLNPWNWKN--GDVHYLQV 175
+G G V+ V++C + SE + ++ + GL P++ G + +L +
Sbjct: 233 LGLHAPGFFDKVLHVEKCLLQSEPADKVLAIVQETWLDPALGLTPYDVHKHVGFLKHLMI 292
Query: 176 REGK--FTG--EVMINVIAHI-PPSGREELT-------EAFGFADSVYWSLKRDKRDDPK 223
R G+ TG EVM+N + P E L E ++V S+ + +
Sbjct: 293 RTGRNITTGAPEVMVNFVTSCYKPELLEPLVNNITKIPEVVSIMNNVNTSVGNTSVGEEE 352
Query: 224 GIPTLIKGNEFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESFA----EGSKV-LDL 278
+ G I E + GL + I ++FFQTN+ +L K + A +GS++ LDL
Sbjct: 353 ---YTLYGKPTITEMLRGLTFQISANSFFQTNTKQADVLYKLIGESAGLKGDGSEIILDL 409
Query: 279 YSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSL-DVSFIPG---RAEDAKLKG 334
+ G GT L LA++ V G EV E++ AKK+A++N + + +F+ G + + K
Sbjct: 410 FCGTGTIGLTLARRAKHVYGYEVVPEAIADAKKNAKLNGISNATFVQGDLNKINETFGKE 469
Query: 335 Y---ETLIVDPPRKGL-KDFSKRIAKEGPENLIYVSCNPSKFV--LDY------RNYLSK 382
+ + +I DP R G+ K + + ++YVSCNP+ LDY L
Sbjct: 470 FPKPDIIISDPNRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDLDYLCHGVEEKDLKG 529
Query: 383 AYKIEDAVLIDMFPHTPHVEAVVKL 407
Y+++ + +DMFPHTPH+E + L
Sbjct: 530 CYELKTVIPVDMFPHTPHIECICVL 554
>sp|P55136|YGCA_VIBSS HYPOTHETICAL RNA METHYLTRANSFERASE IN RELA 5'REGION (ORFA)
>gi|537618|gb|AAA62209.1| (U13769) unknown [Vibrio sp.]
Length = 220
Score = 87.8 bits (214), Expect = 2e-16
Identities = 48/138 (34%), Positives = 75/138 (53%), Gaps = 7/138 (5%)
Query: 274 KVLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSLD-VSFIPGRAEDAKL 332
+VLDL+ G+G FSL LA++ V GVE +E V A +A N LD +F ++
Sbjct: 67 RVLDLFCGLGNFSLPLARRAKAVVGVEGVDEMVARATANAAANGLDNATFYQANLDEDVT 126
Query: 333 K------GYETLIVDPPRKGLKDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKI 386
K ++ +++DP R G + I P ++YVSCNP+ D + L + YK+
Sbjct: 127 KLVWAQEQFDKILLDPARAGAAGVMQHIVNLAPSKVVYVSCNPATLARDSQMLLQQGYKL 186
Query: 387 EDAVLIDMFPHTPHVEAV 404
++DMFPHT H+E++
Sbjct: 187 ARLGMMDMFPHTGHLESM 204
>pir||T34574 hypothetical protein SC10A5.06 SC10A5.06 - Streptomyces coelicolor
>gi|2815315|emb|CAA16438.1| (AL021529) SC10A5.06,
unknown, len: 458; similar to M. tubercul osis
hypothetical protein TR:O07191 (EMBL:Z96072) MTCY05A6.
10C (405 aa), fasta scores; opt: 455 z-score: 878.5 E():
0, 38.4% identity in 417 aa overlap, and weakly simialar
to s everal pu>
Length = 458
Score = 87.0 bits (212), Expect = 4e-16
Identities = 104/430 (24%), Positives = 171/430 (39%), Gaps = 67/430 (15%)
Query: 17 GEVL-VPFAYPGD-VVEVISTRERFGRTIARD-FKLVKSSPIRVPGKCRYFG--RCGGCL 71
G+VL V PG+ VV ++ E R + D +++ S R+ C + G RCGGC
Sbjct: 50 GQVLFVRHTLPGERVVARVTEGEEGARFLRADAVEILDPSKDRIEAPCPFAGPGRCGGCD 109
Query: 72 WQGLKYREQLKLKEEI----FKRVTGVEAEIKG--------------SPRIWFFRNISNF 113
WQ K Q +LK E+ +R+ G+ E G + ++ +R F
Sbjct: 110 WQHAKPGAQRRLKGEVVAEQLQRLAGLTPEEAGWDGTVMPAEGDKLPAGQVPSWRTRVQF 169
Query: 114 IVTVNGIGFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKNGDVHYL 173
V +G + +D C + +E E G+ +W
Sbjct: 170 AVDADGRAGLRRHRSHEIEPIDHCMIAAEGVS-----------ELGIERRDWPG----MA 214
Query: 174 QVREGKFTGEVMINVIAHIPPSGREELTEAFGFADSVYWSLKRDKRDDPKGIPTLIKGNE 233
V TG VI P R + E D ++ ++D G + G
Sbjct: 215 TVEAIAATGSQDRQVILTPRPGARLPIVEL----DRPVSVMRVGEKD---GGVHRVHGRP 267
Query: 234 FIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESFA---EGSKVLDLYSGVGTFSLYLA 290
F+RE + Y + F+Q + A L+ AV +G LDLY GVG F+ LA
Sbjct: 268 FVRERADDRTYRVGSGGFWQVHPKAADTLVTAVMQGLLPRKGDMALDLYCGVGLFAGALA 327
Query: 291 KKGFE---VTGVEVNEESVRVAKKSAEVNSLDVSFIPGRAEDAKLKGY---------ETL 338
+ + V G+E + +V A+ + +F R E K++ + +
Sbjct: 328 DRVGDQGAVLGIESGKRAVEDARHNL------AAFDRVRIEQGKVESVLPRTGIDEVDLI 381
Query: 339 IVDPPRKGL-KDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPH 397
++DPPR G + + ++ G + YV+C+P+ D + Y++ + D+FP
Sbjct: 382 VLDPPRAGAGRKTVQHLSTLGARRIAYVACDPAALARDLGYFQDGGYRVRTLRVFDLFPM 441
Query: 398 TPHVEAVVKL 407
T HVE V L
Sbjct: 442 TAHVECVAIL 451
>emb|CAB95525.1| (AL359782) possible protein htf9c [Trypanosoma brucei]
Length = 559
Score = 84.7 bits (206), Expect = 2e-15
Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 24/212 (11%)
Query: 222 PKGIPTLIKGNEFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESFAE---GSKVLDL 278
P+ ++ G+ + E + GL + + P++FFQ N+ + +LL+ + AE + +LDL
Sbjct: 344 PEAPRHVLFGSATLTEHLLGLQFELSPTSFFQVNTAGMELLLRETVAVAELTPETTLLDL 403
Query: 279 YSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSL-DVSFIPGRAEDAKLKGYET 337
G GT + LAK V G+E+ E +VR A+ +AE N + + +F GR E
Sbjct: 404 CCGTGTIGIALAKHVKRVIGIELVESAVRDARLNAERNGVRNATFNCGRVEHLLPSVISQ 463
Query: 338 L----------IVDPPRKGLKDFSKRIAKEGP--ENLIYVSCNPSKFVLD--------YR 377
L I+DPPR G+ + + L+Y+SC D +
Sbjct: 464 LSPEDRKDIVAILDPPRAGVTPTVLKWIRGTATIRRLVYISCEQKALQRDCPPLTKPATK 523
Query: 378 NYLSKAYKIEDAVLIDMFPHTPHVEAVVKLRR 409
Y + + IDMFPHTPHVE V L R
Sbjct: 524 AYRESPFNVVAGFAIDMFPHTPHVEMVAVLSR 555
>sp|P23003|TRMA_ECOLI TRNA (URACIL-5-)-METHYLTRANSFERASE
(TRNA(M-5-U54)-METHYLTRANSFERASE) (RUMT)
>gi|96525|pir||A37321 tRNA (uracil-5-)-methyltransferase
(EC 2.1.1.35) - Escherichia coli
>gi|148051|gb|AAA24691.1| (M57568) m-5-U54 transfer RNA
methyltransferase [Escherichia coli]
>gi|396312|gb|AAC43071.1| (U00006) tRNA
(uracil-5)-methyltransferase [Escherichia coli]
>gi|1790403|gb|AAC76947.1| (AE000470) tRNA
(uracil-5-)-methyltransferase [Escherichia coli K12]
Length = 366
Score = 80.0 bits (194), Expect = 5e-14
Identities = 63/200 (31%), Positives = 95/200 (47%), Gaps = 31/200 (15%)
Query: 229 IKGNEFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESFAEGSK--VLDLYSGVGTFS 286
+ G E I +E ++F Q N+ +L+ +GSK +L+LY G G FS
Sbjct: 174 VAGKEMIYRQVE--------NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFS 225
Query: 287 LYLAKKGFEVTGVEVNEESVRVAKKSAEVNSLD-VSFIPGRAED---------------- 329
L LA+ V E+ + SV A+ + N +D V I AE+
Sbjct: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285
Query: 330 AKLKGY--ETLIVDPPRKGLKDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKIE 387
LK Y ET+ VDPPR GL ++++ + P ++Y+SCNP + LS+ +K+E
Sbjct: 286 IDLKSYQCETIFVDPPRSGLDSETEKMVQAYP-RILYISCNPETLCKNLET-LSQTHKVE 343
Query: 388 DAVLIDMFPHTPHVEAVVKL 407
L D FP+T H+E V L
Sbjct: 344 RLALFDQFPYTHHMECGVLL 363
>pir||A81055 tRNA (uracil-5-)-methyltransferase NMB1679 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226932|gb|AAF42027.1| (AE002518) tRNA
(uracil-5-)-methyltransferase [Neisseria meningitidis
MC58]
Length = 362
Score = 77.3 bits (187), Expect = 3e-13
Identities = 61/208 (29%), Positives = 102/208 (48%), Gaps = 34/208 (16%)
Query: 227 TLIKGN-EFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESFAEG--SKVLDLYSGVG 283
TL GN +F IEG +F Q N+ +L+ AEG S +L+LY G G
Sbjct: 163 TLKVGNRDFRYRQIEG--------SFTQPNAAVCQKMLEWACRTAEGLGSDLLELYCGNG 214
Query: 284 TFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSLD------------VSFIPGRAEDAK 331
F+L L++ +V E+++ SV A+ + E N + G+ E +
Sbjct: 215 NFTLPLSRYFRQVLATEISKTSVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKR 274
Query: 332 LK---------GYETLIVDPPRKGLKDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSK 382
LK + T+ VDPPR G+ + + ++ + +N+IY+SCNP + + L++
Sbjct: 275 LKDGGIALTDYAFSTIFVDPPRAGIDEETLKLVSQF-DNIIYISCNPETLRANL-DTLAE 332
Query: 383 AYKIEDAVLIDMFPHTPHVEAVVKLRRR 410
+ +E A L D FP T H+E+ V L+++
Sbjct: 333 THAVERAALFDQFPFTHHIESGVLLKKK 360
>pir||H81821 tRNA (uracil-5-)-methyltransferase (EC 2.1.1.35) NMA1938 [imported]
- Neisseria meningitidis (group A strain Z2491)
>gi|7380570|emb|CAB85158.1| (AL162757) tRNA
(uracil-5-)-methyltransferase [Neisseria meningitidis
Z2491]
Length = 362
Score = 76.9 bits (186), Expect = 4e-13
Identities = 62/208 (29%), Positives = 100/208 (47%), Gaps = 34/208 (16%)
Query: 227 TLIKGN-EFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESFAEG--SKVLDLYSGVG 283
TL GN +F IEG F Q N+ +L+ AEG +L+LY G G
Sbjct: 163 TLKVGNRDFRYRQIEG--------GFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNG 214
Query: 284 TFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSLD------------VSFIPGRAEDAK 331
F+L L++K V E+++ SV A+ + E N + G+ E A+
Sbjct: 215 NFTLPLSEKFERVLATEISKTSVGAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFAR 274
Query: 332 LK---------GYETLIVDPPRKGLKDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSK 382
LK + T+ VDPPR G+ + + ++ + +N+IY+SCNP + + L +
Sbjct: 275 LKDGGIALTDYAFSTIFVDPPRAGIDEETLKLVSQF-DNIIYISCNPETLRANL-DTLVE 332
Query: 383 AYKIEDAVLIDMFPHTPHVEAVVKLRRR 410
+ +E A L D FP T H+E+ V L+++
Sbjct: 333 THVVERAALFDQFPFTHHIESGVLLKKK 360
>sp|P31812|TRMA_HAEIN TRNA (URACIL-5-)-METHYLTRANSFERASE
(TRNA(M-5-U54)-METHYLTRANSFERASE) (RUMT)
>gi|1075394|pir||C64098 tRNA
(uracil-5-)-methyltransferase (EC 2.1.1.35) -
Haemophilus influenzae (strain Rd KW20)
>gi|1573862|gb|AAC22505.1| (U32766) tRNA
(uracil-5-)-methyltransferase (trmA) [Haemophilus
influenzae Rd]
Length = 363
Score = 73.4 bits (177), Expect = 5e-12
Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 23/189 (12%)
Query: 243 VYLIHPSTFFQTNSYALPILLKAVESFAEGSK--VLDLYSGVGTFSLYLAKKGFEVTGVE 300
VY ++F Q N+ +L+ + S+ +L+LY G G FS+ LA+ +V E
Sbjct: 177 VYRQVENSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATE 236
Query: 301 VNEESVRVAKKSAEVNSLD-VSFIPGRAED----------------AKLKGYE--TLIVD 341
+ + SV A+ + N +D + I AE+ LK YE T+ VD
Sbjct: 237 IAKPSVAAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVD 296
Query: 342 PPRKGLKDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTPHV 401
PPR GL + ++ + + ++Y+SCNP + D LSK ++IE A L D FP+T H+
Sbjct: 297 PPRAGLDPDTVKLV-QNYDRILYISCNPHT-LCDNLVELSKTHRIEKAALFDQFPYTDHM 354
Query: 402 EAVVKLRRR 410
E+ + L R+
Sbjct: 355 ESGLWLIRK 363
>pir||G81355 tRNA (uracil-5-)-methyltransferase (EC 2.1.1.35) Cj0831c [imported]
- Campylobacter jejuni (strain NCTC 11168)
>gi|6968277|emb|CAB73096.1| (AL139076) tRNA
(uracil-5-)-methyltransferase [Campylobacter jejuni]
Length = 357
Score = 71.0 bits (171), Expect = 2e-11
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 23/155 (14%)
Query: 275 VLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEV-NSLDVSFIPGRAEDAKLK 333
+L+LY G G F+L LA F++ E+++ ++ A K+ E+ N+ ++ F +E+ L
Sbjct: 205 LLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCELNNTTNIHFARLSSEELSLA 264
Query: 334 ------------------GYETLIVDPPRKGL-KDFSKRIAKEGPENLIYVSCNPSKFVL 374
+ ++VDPPR GL K I K G N+IY+SCNP
Sbjct: 265 IKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYG--NIIYISCNPMTLKE 322
Query: 375 DYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKLRR 409
+ + LS +++E+ L D F +TPH+E V L +
Sbjct: 323 NLKE-LSLTHRVEEFALFDQFVNTPHLECGVFLSK 356
>dbj|BAB14223.1| (AK022749) unnamed protein product [Homo sapiens]
Length = 504
Score = 70.6 bits (170), Expect = 3e-11
Identities = 61/211 (28%), Positives = 95/211 (44%), Gaps = 33/211 (15%)
Query: 228 LIKGNEFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESFA---EGSKVLDLYSGVGT 284
L+ G +I E + L I P FFQ N+ +L + V + +LD+ G G
Sbjct: 298 LLFGEPYIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVNSDTILLDICCGTGV 357
Query: 285 FSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSLDVS-FIPGRAED---AKLKGYE---- 336
L LA+ V G+E+ E++V A+ +A N + S F G+AE LK E
Sbjct: 358 IGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKEDGQS 417
Query: 337 -TLIVDPPRKGL--------KDF---------SKRIAKEGPENLIYVSCNPSKFVLDYRN 378
+V+P R GL ++F S ++ E N+I + C P +
Sbjct: 418 IVAVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPA----KK 473
Query: 379 YLSKAYKIEDAVLIDMFPHTPHVEAVVKLRR 409
L + + ++ AV +D+FPHTPH E V+ R
Sbjct: 474 LLGEPFVLQQAVPVDLFPHTPHCELVLLFTR 504
>dbj|BAA88495.1| (AB023289) (uracil-5-)methyltransferase [Pseudomonas fluorescens]
Length = 363
Score = 70.2 bits (169), Expect = 4e-11
Identities = 80/310 (25%), Positives = 134/310 (42%), Gaps = 45/310 (14%)
Query: 129 RTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKNGDVHYLQVREGKFTGEVMINV 188
RT + ++E P+ S R + +K + + + K V +L G+ MI +
Sbjct: 71 RTPILIEEFPIASLRINQLMPQLKAAWQASAA--LSHKLFQVEFLTT----LAGDAMITL 124
Query: 189 IAHIPPSGREELTEAFGFADSVYWSL---KRDKRDDPKGIPTLIKGNEFIRESIE----G 241
H P T A A + S+ + KRD + G +++ E ++
Sbjct: 125 CYHRPLDEHWH-TAANKLAADLNVSIIGRSKGKRD--------VIGRDYVVEKLDVGGRT 175
Query: 242 LVYLIHPSTFFQTNSYALPILLK-AVESFAEGSK-VLDLYSGVGTFSLYLAKKGFEVTGV 299
Y F Q N +L A E+ + S +L+LY G G F+L LA + +V
Sbjct: 176 FSYRQPEGAFTQPNGTVNQKMLNWAFEALGDRSDDLLELYCGNGNFTLPLATRVRKVLAT 235
Query: 300 EVNEESVRVAKKSAEVNSLD-VSFIPGRAED----------------AKLKGYE--TLIV 340
E+++ SV A + + N++D V+ + AE+ LK YE ++ V
Sbjct: 236 EISKTSVNAALSNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFV 295
Query: 341 DPPRKGLKDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTPH 400
DPPR G+ + + + EN++Y+SCNP + L ++I + D FP T H
Sbjct: 296 DPPRAGMDPDTCELTRRF-ENILYISCNPETLAANIAQ-LHDTHRITQCAMFDQFPWTHH 353
Query: 401 VEAVVKLRRR 410
+E+ V L RR
Sbjct: 354 MESGVLLTRR 363
>pir||H82357 tRNA (uracil-5-)-methyltransferase VC0154 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9654556|gb|AAF93331.1| (AE004105) tRNA
(uracil-5-)-methyltransferase [Vibrio cholerae]
Length = 369
Score = 69.5 bits (167), Expect = 7e-11
Identities = 57/191 (29%), Positives = 90/191 (46%), Gaps = 25/191 (13%)
Query: 243 VYLIHPSTFFQTNSYALPILLKAVESFAEGSK--VLDLYSGVGTFSLYLAKKGFEVTGVE 300
VY ++F Q N+ +L+ + SK +L+LY G G FSL LA+ V E
Sbjct: 180 VYKQVENSFTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATE 239
Query: 301 VNEESVRVAKKSAEVNSL-DVSFIPGRAED------------------AKLKGY--ETLI 339
+ + SV A+ + N + +V I AE+ L+ Y T+
Sbjct: 240 LAKPSVEAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIF 299
Query: 340 VDPPRKGLKDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTP 399
VDPPR G+ D +G E ++Y+SCNP + + + L + +++ L D FP+T
Sbjct: 300 VDPPRSGM-DIDTCKMVQGYERILYISCNP-ETLQENLQVLGETHQVVRFALFDQFPYTH 357
Query: 400 HVEAVVKLRRR 410
H+EA V L R+
Sbjct: 358 HMEAGVMLERK 368
>pir||B83057 tRNA (uracil-5-)-methyltransferase PA4720 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950979|gb|AAG08106.1|AE004885_11 (AE004885) tRNA
(uracil-5-)-methyltransferase [Pseudomonas aeruginosa]
Length = 363
Score = 69.5 bits (167), Expect = 7e-11
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 21/155 (13%)
Query: 275 VLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSLD-VSFIPGRAE----- 328
+L+LY G G F+L LA + +V E+++ SV A + N++D VS + AE
Sbjct: 211 LLELYCGNGNFTLPLATRVRKVLATEISKSSVNAALANLADNAVDNVSLVRLSAEELTQA 270
Query: 329 -----------DAKLKGYE--TLIVDPPRKGLKDFSKRIAKEGPENLIYVSCNPSKFVLD 375
D LK Y ++ VDPPR G+ + +A+ E ++Y+SCNP +
Sbjct: 271 LNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDPDTCELARRF-ERILYISCNPETLAQN 329
Query: 376 YRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKLRRR 410
L ++I L D FP+T H+E+ V L RR
Sbjct: 330 IAQ-LHDTHRISRCALFDQFPYTHHMESGVLLERR 363
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.420
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155939174
Number of Sequences: 2977
Number of extensions: 6744837
Number of successful extensions: 14918
Number of sequences better than 1.0e-10: 45
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 14768
Number of HSP's gapped (non-prelim): 59
length of query: 410
length of database: 189,106,746
effective HSP length: 54
effective length of query: 356
effective length of database: 156,788,448
effective search space: 55816687488
effective search space used: 55816687488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)