BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0765 (PAB0765) DE:Hypothetical protein
(186 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75095 hypothetical protein PAB0765 - Pyrococcus abyssi (st... 396 e-109
sp|O58984|YC69_PYRHO HYPOTHETICAL PROTEIN PH1269 >gi|7444662|pir... 333 1e-90
gi|11499288 conserved hypothetical protein [Archaeoglobus fulgid... 194 5e-49
sp|O67293|YC50_AQUAE HYPOTHETICAL PROTEIN AQ_1250 >gi|7444663|pi... 161 4e-39
gb|AAK41064.1| Conserved hypothetical protein [Sulfolobus solfat... 152 3e-36
emb|CAB57536.1| (Y18930) hypothetical protein [Sulfolobus solfat... 152 3e-36
sp|O26373|Y273_METTH HYPOTHETICAL PROTEIN MTH273 >gi|7444661|pir... 151 5e-36
emb|CAC12212.1| (AL445066) conserved hypothetical protein [Therm... 129 2e-29
sp|O84741|Y736_CHLTR HYPOTHETICAL PROTEIN CT736 >gi|7444666|pir|... 122 3e-27
pir||F81740 conserved hypothetical protein TC0109 [imported] - C... 120 9e-27
gb|AAG20289.1| (AE005103) Vng2152c [Halobacterium sp. NRC-1] 113 1e-24
sp|Q9Z729|Y877_CHLPN HYPOTHETICAL PROTEIN CPN0877 >gi|7444665|pi... 105 4e-22
sp|O07722|YJ11_MYCTU HYPOTHETICAL 19.8 KDA PROTEIN RV1911C >gi|7... 99 3e-20
sp|P77368|YBCL_ECOLI HYPOTHETICAL 19.5 KDA PROTEIN IN EMRE-RUS I... 92 3e-18
pir||T48152 hypothetical protein T10O8.10 - Arabidopsis thaliana... 84 1e-15
sp|O07723|YJ10_MYCTU HYPOTHETICAL 19.9 KDA PROTEIN RV1910C >gi|7... 83 2e-15
emb|CAC12881.1| (AJ291295) cold-regulated protein [Hordeum vulgare] 82 4e-15
sp|Q9X9Z8|Y502_STRCO HYPOTHETICAL PROTEIN SCI5.02 >gi|7479208|pi... 77 1e-13
sp|O06235|YL40_MYCTU HYPOTHETICAL 18.6 KDA PROTEIN RV2140C >gi|7... 74 1e-12
gb|AAA23513.1| (J04423) ORF 1 [Escherichia coli] 72 5e-12
sp|P12994|YBHB_ECOLI HYPOTHETICAL 17.1 KDA PROTEIN IN MODC-BIOA ... 71 7e-12
pir||C82243 conserved hypothetical protein VC1075 [imported] - V... 70 2e-11
gb|AAG03362.1| (AF024666) Ybhb [Corynebacterium striatum] 68 6e-11
>pir||C75095 hypothetical protein PAB0765 - Pyrococcus abyssi (strain Orsay)
>gi|5458576|emb|CAB50064.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 186
Score = 396 bits (1006), Expect = e-109
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MFLGEFSIMRYLVPLLVFMVLGMGCLGGGGEEMVKVSSVFGNDEFIPAKYTCEGIDVNPP 60
MFLGEFSIMRYLVPLLVFMVLGMGCLGGGGEEMVKVSSVFGNDEFIPAKYTCEGIDVNPP
Sbjct: 1 MFLGEFSIMRYLVPLLVFMVLGMGCLGGGGEEMVKVSSVFGNDEFIPAKYTCEGIDVNPP 60
Query: 61 LRIEGISENAKSLVIIVDDPDAPLGTFTHWIAWNIPPVEEIPEGIPKQGEVEKPIHMIQG 120
LRIEGISENAKSLVIIVDDPDAPLGTFTHWIAWNIPPVEEIPEGIPKQGEVEKPIHMIQG
Sbjct: 61 LRIEGISENAKSLVIIVDDPDAPLGTFTHWIAWNIPPVEEIPEGIPKQGEVEKPIHMIQG 120
Query: 121 RNDFGRIGYNGPCPPRGHGVHHYHFKVYVLDTTLNLRPGATREELEKAMEGHIIQFGELV 180
RNDFGRIGYNGPCPPRGHGVHHYHFKVYVLDTTLNLRPGATREELEKAMEGHIIQFGELV
Sbjct: 121 RNDFGRIGYNGPCPPRGHGVHHYHFKVYVLDTTLNLRPGATREELEKAMEGHIIQFGELV 180
Query: 181 GLYERK 186
GLYERK
Sbjct: 181 GLYERK 186
>sp|O58984|YC69_PYRHO HYPOTHETICAL PROTEIN PH1269 >gi|7444662|pir||B71072 hypothetical
protein PH1269 - Pyrococcus horikoshii
>gi|3257689|dbj|BAA30372.1| (AP000005) 198aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 198
Score = 333 bits (844), Expect = 1e-90
Identities = 150/189 (79%), Positives = 176/189 (92%), Gaps = 3/189 (1%)
Query: 1 MFLGEFSIMRYLVPLLV--FMVLGMGCLGGGGEEM-VKVSSVFGNDEFIPAKYTCEGIDV 57
+ +G IM+ L+P+++ ++LGMGC+GGG E+M +KVSSVFGN+EFIPAKYTCEG+D+
Sbjct: 10 ILVGVPPIMKSLIPIVLATLVILGMGCIGGGEEKMSLKVSSVFGNNEFIPAKYTCEGVDI 69
Query: 58 NPPLRIEGISENAKSLVIIVDDPDAPLGTFTHWIAWNIPPVEEIPEGIPKQGEVEKPIHM 117
NPPL+IEG+S+N KSLVIIVDDPDAP+GTFTHWIAWNIPPV EIPEGIPKQGEV+KPIH+
Sbjct: 70 NPPLKIEGLSDNVKSLVIIVDDPDAPMGTFTHWIAWNIPPVTEIPEGIPKQGEVDKPIHI 129
Query: 118 IQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYVLDTTLNLRPGATREELEKAMEGHIIQFG 177
IQGRNDFGRIGYNGPCPPRGHGVHHYHFKVY LDTTLNL+PGA+R+ELEKAMEGH+IQ+G
Sbjct: 130 IQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYALDTTLNLKPGASRKELEKAMEGHVIQYG 189
Query: 178 ELVGLYERK 186
ELVGLYERK
Sbjct: 190 ELVGLYERK 198
>gi|11499288 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6686189|sp|O28575|YG98_ARCFU HYPOTHETICAL PROTEIN
AF1698 >gi|7444660|pir||A69462 conserved hypothetical
protein AF1698 - Archaeoglobus fulgidus
>gi|2648856|gb|AAB89551.1| (AE000986) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 287
Score = 194 bits (489), Expect = 5e-49
Identities = 91/158 (57%), Positives = 118/158 (74%), Gaps = 8/158 (5%)
Query: 31 EEMVK---VSSVFGNDEFIPAKYTCEGIDVNPPLRIEGISENAKSLVIIVDDPDAPLGTF 87
+EM K V S F N IPAKYTC+G D++PPL IEG+ E+ KSLVII +DPDAP+G F
Sbjct: 133 KEMAKSLTVKSAFENGGKIPAKYTCDGEDISPPLYIEGLREDVKSLVIICEDPDAPMGVF 192
Query: 88 THWIAWNIPPVEEIPEGIPKQGEVEKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFKV 147
THWIAWN+ P EIPE +PK V++P M+QGRNDFG++GYNGPCPP G H Y+F++
Sbjct: 193 THWIAWNVEPTSEIPENVPKTKFVDEP-KMVQGRNDFGKVGYNGPCPPSGE--HRYYFRI 249
Query: 148 YVLDTTLNLRPGATREELEKAMEGHIIQFGELVGLYER 185
Y +DT L+ +R+EL +A+EGHI+Q+GE+ GLY R
Sbjct: 250 YAIDTL--LQGDYSRQELLRAIEGHILQYGEIYGLYSR 285
>sp|O67293|YC50_AQUAE HYPOTHETICAL PROTEIN AQ_1250 >gi|7444663|pir||B70408 conserved
hypothetical protein aq_1250 - Aquifex aeolicus
>gi|2983690|gb|AAC07255.1| (AE000730) hypothetical
protein [Aquifex aeolicus]
Length = 171
Score = 161 bits (404), Expect = 4e-39
Identities = 80/173 (46%), Positives = 108/173 (62%), Gaps = 5/173 (2%)
Query: 15 LLVFMVLGMGCLGGGGEEMVKVSSVFGNDEFIPAKYTCEGIDVNPPLRIEGISENAKSLV 74
+L +++ GG M S F N E IP YTC+G D++P + E + E KS V
Sbjct: 1 MLGSLIVNFKLFSAGGAIMEVFSRSFKNGEEIPKVYTCDGKDISPHIGWEDVPEGTKSFV 60
Query: 75 IIVDDPDAPLGTFTHWIAWNIP-PVEEIPEGIPKQGEVEKPIHMIQGRNDFGRIGYNGPC 133
+I+DDPDAP+GTFTHW+ ++IP E+ E PK EV + QG NDFGR+GY GPC
Sbjct: 61 LIMDDPDAPIGTFTHWVVYDIPSQTRELLEDFPKVPEVS---GIKQGINDFGRVGYGGPC 117
Query: 134 PPRGHGVHHYHFKVYVLDT-TLNLRPGATREELEKAMEGHIIQFGELVGLYER 185
PPRGHG H Y FKV+ L +L L PGA+R+++E M G I+ ++GLY+R
Sbjct: 118 PPRGHGYHRYFFKVFALSVESLGLPPGASRKDVELKMNGKILAQAHIIGLYKR 170
>gb|AAK41064.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 157
Score = 152 bits (380), Expect = 3e-36
Identities = 75/151 (49%), Positives = 102/151 (66%), Gaps = 5/151 (3%)
Query: 36 VSSVFGNDEFIPAKYTCEGIDVNPPLRIEGISENAKSLVIIVDDPDAPLGTFTHWIAWNI 95
VSS F N++FIP KYTC+G D++P L + ++ NAKS IIV+DPDAP GTF HW+ +NI
Sbjct: 12 VSSAFKNEDFIPIKYTCDGQDLSPELEWDLVT-NAKSYAIIVEDPDAPGGTFIHWVIYNI 70
Query: 96 PPVEEIPEGIPKQGEVEKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYVLDTTLN 155
+PEG+P+ + K + +QG NDFG IGYNGPCPP+ H H Y+F VY +DT L
Sbjct: 71 T-TNRLPEGVPR---LYKSQYGVQGVNDFGNIGYNGPCPPKTHPPHRYYFYVYAIDTILL 126
Query: 156 LRPGATREELEKAMEGHIIQFGELVGLYERK 186
++L+ MEGH I+ G ++G Y+RK
Sbjct: 127 EIKNINADKLKSLMEGHGIERGFVMGKYKRK 157
>emb|CAB57536.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 157
Score = 152 bits (380), Expect = 3e-36
Identities = 75/151 (49%), Positives = 102/151 (66%), Gaps = 5/151 (3%)
Query: 36 VSSVFGNDEFIPAKYTCEGIDVNPPLRIEGISENAKSLVIIVDDPDAPLGTFTHWIAWNI 95
VSS F N++FIP KYTC+G D++P L + ++ NAKS IIV+DPDAP GTF HW+ +NI
Sbjct: 12 VSSAFKNEDFIPIKYTCDGQDLSPELEWDLVT-NAKSYAIIVEDPDAPGGTFIHWVIYNI 70
Query: 96 PPVEEIPEGIPKQGEVEKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYVLDTTLN 155
+PEG+P+ + K + +QG NDFG IGYNGPCPP+ H H Y+F VY +DT L
Sbjct: 71 T-TNRLPEGVPR---LYKSQYGVQGVNDFGNIGYNGPCPPKTHPPHRYYFYVYAIDTILL 126
Query: 156 LRPGATREELEKAMEGHIIQFGELVGLYERK 186
++L+ MEGH I+ G ++G Y+RK
Sbjct: 127 EIKNINADKLKSLMEGHGIERGFVMGKYKRK 157
>sp|O26373|Y273_METTH HYPOTHETICAL PROTEIN MTH273 >gi|7444661|pir||E69134 conserved
hypothetical protein MTH273 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621324|gb|AAB84779.1| (AE000813) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 151
Score = 151 bits (378), Expect = 5e-36
Identities = 69/141 (48%), Positives = 98/141 (68%), Gaps = 5/141 (3%)
Query: 46 IPAKYTCEGIDVNPPLRIEGISENAKSLVIIVDDPDAPLGTFTHWIAWNIPPVEE-IPEG 104
IP++YTC+G +++PPL +G+ AKSL +I DDPDAP +THW+ +NIPP + E
Sbjct: 14 IPSRYTCDGENISPPLSWDGVPGEAKSLALICDDPDAPSKVWTHWVIFNIPPDSTGLEEN 73
Query: 105 IPKQGEVEKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYVLDTTLNLRPGATREE 164
+P G + P +QG ND G +GY GPCPP GVH Y F++Y LDT L+L PGA++E+
Sbjct: 74 VPDAGRL--PDGSVQGYNDSGTLGYRGPCPP--SGVHRYFFRLYALDTVLDLEPGASKED 129
Query: 165 LEKAMEGHIIQFGELVGLYER 185
+ +AMEGH++ +L+GLY R
Sbjct: 130 VLEAMEGHVLGEAKLIGLYRR 150
>emb|CAC12212.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 161
Score = 129 bits (321), Expect = 2e-29
Identities = 73/154 (47%), Positives = 90/154 (58%), Gaps = 10/154 (6%)
Query: 34 VKVSSVFGNDEFIPAKYTCEGIDVNPPLRIEGISENAKSLVIIVDDPDAPLGTFTHWIAW 93
VKV FG IP +YTC+G D P + +EG KSL +IVDDPDAP G FTH I +
Sbjct: 16 VKVEG-FGKGSQIPVEYTCDGEDRMPAIAVEGFPSGTKSLALIVDDPDAPSGLFTHCIIY 74
Query: 94 NIP-PVEEIPEGIPKQGEVEKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYVLDT 152
NIP V+ I I KQ V + G NDFG GY GPCPP G H Y+FKV LDT
Sbjct: 75 NIPTSVKVIDSSILKQTGV------LSGVNDFGNKGYGGPCPPPGK-PHRYYFKVLALDT 127
Query: 153 TLNLRPGATREELEKAMEGHIIQFGELVGLYERK 186
TL + G R++ + A+ GH++ E +G Y RK
Sbjct: 128 TLT-KAGMKRKDFDNAVRGHVLGQAEYMGTYLRK 160
>sp|O84741|Y736_CHLTR HYPOTHETICAL PROTEIN CT736 >gi|7444666|pir||G71477 hypothetical
protein ybcL - Chlamydia trachomatis (serotype D, strain
UW3/Cx) >gi|3329194|gb|AAC68331.1| (AE001344)
hypothetical protein [Chlamydia trachomatis]
Length = 150
Score = 122 bits (303), Expect = 3e-27
Identities = 66/159 (41%), Positives = 87/159 (54%), Gaps = 16/159 (10%)
Query: 33 MVKVSSVFGNDEFIPAKYTCEGIDVNPPLRIEGISENAKSLVIIVDDPDAPL-----GTF 87
M S F IP KY+C+G+ ++PPL + AKSLV+IV+DPD P G +
Sbjct: 1 MQLTSQAFSYGRPIPKKYSCQGVGISPPLSFSDVPREAKSLVLIVEDPDVPPSVREDGLW 60
Query: 88 THWIAWNIPP-VEEIPEGIPKQGEVEKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFK 146
HWI +N+ P V + EG I +QG N G IGY PCPP H Y+F
Sbjct: 61 IHWIVYNLSPVVSNLAEG--------AQIFAVQGLNTAGEIGYCPPCPP--DAKHRYYFY 110
Query: 147 VYVLDTTLNLRPGATREELEKAMEGHIIQFGELVGLYER 185
Y LD L+ G T+E+L +AM+GHII EL+G YE+
Sbjct: 111 AYALDVVLSDEEGVTKEQLLEAMDGHIIATAELMGTYEK 149
>pir||F81740 conserved hypothetical protein TC0109 [imported] - Chlamydia
muridarum (strain Nigg) >gi|7190144|gb|AAF38988.1|
(AE002278) conserved hypothetical protein [Chlamydia
muridarum]
Length = 150
Score = 120 bits (299), Expect = 9e-27
Identities = 66/159 (41%), Positives = 85/159 (52%), Gaps = 16/159 (10%)
Query: 33 MVKVSSVFGNDEFIPAKYTCEGIDVNPPLRIEGISENAKSLVIIVDDPDAPL-----GTF 87
M S F IP KY+C+G+ ++PPL I AKSL +IV+DPD P G +
Sbjct: 1 MQLTSQAFSYGRPIPKKYSCQGVGISPPLSFSDIPSEAKSLALIVEDPDVPANVREDGLW 60
Query: 88 THWIAWNIPP-VEEIPEGIPKQGEVEKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFK 146
HWI +N+ P V + EG I +QG N G IGY PCPP H Y+F
Sbjct: 61 IHWIVYNLSPIVSNLAEG--------AQIFAVQGINTAGEIGYCPPCPP--DAKHRYYFY 110
Query: 147 VYVLDTTLNLRPGATREELEKAMEGHIIQFGELVGLYER 185
Y LD L G T+E+L +AMEGHI+ EL+G YE+
Sbjct: 111 AYALDVVLPEEEGVTKEQLLEAMEGHILATAELMGTYEQ 149
>gb|AAG20289.1| (AE005103) Vng2152c [Halobacterium sp. NRC-1]
Length = 216
Score = 113 bits (281), Expect = 1e-24
Identities = 65/149 (43%), Positives = 81/149 (53%), Gaps = 13/149 (8%)
Query: 37 SSVFGNDEFIPAKYTCEGIDVNPPLRIEGISENAKSLVIIVDDPDA--PLG-TFTHWIAW 93
S+ F + IP +YT G DVNPPL I G+ E+A +LV++VDDPDA P G + HW+ W
Sbjct: 73 SNAFADGAAIPDRYTRSGADVNPPLSIAGVPEDAATLVLVVDDPDAVDPAGEVWLHWLVW 132
Query: 94 NIPPVE-EIPEGIPKQGEVEKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYVLDT 152
NIP IP P G NDFG Y GP PP H Y FK+Y LDT
Sbjct: 133 NIPASRTRIP-------AAWTPTEPTVGTNDFGERDYGGPAPP--DDTHLYRFKLYALDT 183
Query: 153 TLNLRPGATREELEKAMEGHIIQFGELVG 181
TL L AT + A+ GH++ +LVG
Sbjct: 184 TLILPQDATERTVGNAVRGHVLASTQLVG 212
>sp|Q9Z729|Y877_CHLPN HYPOTHETICAL PROTEIN CPN0877 >gi|7444665|pir||C72024 conserved
hypothetical protein CP0992 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
>gi|4377195|gb|AAD19015.1| (AE001668) YbcL family-CT736
hypothetical protein [Chlamydophila pneumoniae CWL029]
>gi|7189906|gb|AAF38771.1| (AE002257) conserved
hypothetical protein [Chlamydophila pneumoniae AR39]
>gi|8979251|dbj|BAA99085.1| (AP002548) YbcL family-CT736
hypothetical protein [Chlamydophila pneumoniae J138]
Length = 150
Score = 105 bits (259), Expect = 4e-22
Identities = 60/159 (37%), Positives = 83/159 (51%), Gaps = 16/159 (10%)
Query: 33 MVKVSSVFGNDEFIPAKYTCEGIDVNPPLRIEGISENAKSLVIIVDDPDAPL-----GTF 87
M +S F IP KYTC+G ++PPL + A+SL +IV+DPD P G +
Sbjct: 1 MQLLSPAFAYGAPIPKKYTCQGAGISPPLTFVDVPGAAQSLALIVEDPDVPKEIRSDGLW 60
Query: 88 THWIAWNI-PPVEEIPEGIPKQGEVEKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFK 146
HWI +N+ + + EG I +QG N G+ Y GPCPP H Y F
Sbjct: 61 IHWIVYNLSTTITNLAEG--------AEIFAVQGLNTSGKPVYEGPCPPDKQ--HRYFFT 110
Query: 147 VYVLDTTLNLRPGATREELEKAMEGHIIQFGELVGLYER 185
++ LD L TR++L +AME HII+ EL+G YE+
Sbjct: 111 LFALDVVLPEEENVTRDQLYEAMEFHIIEQAELMGTYEK 149
>sp|O07722|YJ11_MYCTU HYPOTHETICAL 19.8 KDA PROTEIN RV1911C >gi|7478227|pir||D70519
probable lppC protein - Mycobacterium tuberculosis
(strain H37RV) >gi|2225949|emb|CAB10030.1| (Z97193) lppC
[Mycobacterium tuberculosis]
Length = 201
Score = 99.1 bits (243), Expect = 3e-20
Identities = 66/194 (34%), Positives = 87/194 (44%), Gaps = 32/194 (16%)
Query: 15 LLVFMVLGMGCLGGGG------------------------EEMVKVSSVFGNDEFIPAKY 50
L + + LG GC GGGG E + S +F + IP ++
Sbjct: 15 LALVVALG-GCGGGGGDSRETPPYVPKATTVDATTPAPAAEPLTIASPMFADGAPIPVQF 73
Query: 51 TCEGIDVNPPLRIEGISENAKSLVIIVDDPDAPLGTFTHWIAWNIPPVEEIPEGIPKQGE 110
+C+G +V PPL + A L ++VDDPDA G + HWI I P G G+
Sbjct: 74 SCKGANVAPPLTWSSPA-GAAELALVVDDPDAVGGLYVHWIVTGIAP----GSGSTADGQ 128
Query: 111 VEKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYVLDTTLNLRPGATREELEKAME 170
H + N GR GY GPCPP G G HHY F +Y L L L PGAT + +A+
Sbjct: 129 TPAGGHSVP--NSGGRQGYFGPCPPAGTGTHHYRFTLYHLPVALQLPPGATGVQAAQAIA 186
Query: 171 GHIIQFGELVGLYE 184
LVG +E
Sbjct: 187 QAASGQARLVGTFE 200
>sp|P77368|YBCL_ECOLI HYPOTHETICAL 19.5 KDA PROTEIN IN EMRE-RUS INTERGENIC REGION
>gi|7444659|pir||G64786 ybcL protein - Escherichia coli
>gi|1778459|gb|AAB40742.1| (U82598) YbhB homolog
[Escherichia coli] >gi|1786757|gb|AAC73646.1| (AE000160)
orf, hypothetical protein [Escherichia coli K12]
Length = 183
Score = 92.4 bits (226), Expect = 3e-18
Identities = 45/105 (42%), Positives = 60/105 (56%), Gaps = 2/105 (1%)
Query: 50 YTCEGIDVNPPLRIEGISENAKSLVIIVDDPDAPLGT-FTHWIAWNIPP-VEEIPEGIPK 107
+ CEG + +P L G+ E KS + V DPDAP G+ + HW NIP V +P +
Sbjct: 44 FGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATVTYLPVDAGR 103
Query: 108 QGEVEKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYVLDT 152
+ + P +QGRNDFG G+ G CPP+G HHY FKV+ L T
Sbjct: 104 RDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKT 148
>pir||T48152 hypothetical protein T10O8.10 - Arabidopsis thaliana
>gi|7320708|emb|CAB81913.1| (AL161746) putative protein
[Arabidopsis thaliana]
Length = 162
Score = 84.3 bits (205), Expect = 1e-15
Identities = 53/154 (34%), Positives = 81/154 (52%), Gaps = 14/154 (9%)
Query: 31 EEMVKVSSVFGNDEFIPAKYTCEGI----DVNPPLRIEGISENAKSLVIIVD-----DPD 81
EE+ VS ND +P KYT G D++PPL + E K+L ++V+ DP
Sbjct: 4 EELRLVSPTIDNDGKLPRKYTMAGQGVKKDISPPLEWYNVPEGTKTLALVVEDIDAPDPS 63
Query: 82 APLGTFTHWIAWNIPP-VEEIPEGIPKQGEVEKPIHMIQGRNDFGRIGYNGPCPPRGHGV 140
PL +T W+ +IPP ++ +PEG G ++ + +G ND G+ GP P HG
Sbjct: 64 GPLVPWTVWVVVDIPPEMKGLPEGY--SGNEDQTTGIREGNNDHKIPGWRGPLLP-SHG- 119
Query: 141 HHYHFKVYVLDTTLNLRPGATREELEKAMEGHII 174
H + FK++ LD + T+E L A+EGH++
Sbjct: 120 HRFQFKLFALDDKPKIGHTVTKERLLIAIEGHVL 153
>sp|O07723|YJ10_MYCTU HYPOTHETICAL 19.9 KDA PROTEIN RV1910C >gi|7476963|pir||C70519
hypothetical protein Rv1910c - Mycobacterium
tuberculosis (strain H37RV) >gi|2225950|emb|CAB10054.1|
(Z97193) hypothetical protein Rv1910c [Mycobacterium
tuberculosis]
Length = 197
Score = 83.1 bits (202), Expect = 2e-15
Identities = 52/155 (33%), Positives = 69/155 (43%), Gaps = 11/155 (7%)
Query: 30 GEEMVKVSSVFGNDEFIPAKYTCEGIDVNPPLRIEGISENAKSLVIIVDDPDAPLGTFTH 89
G+ + S F + IP +YTC+G ++ PPL A ++VDDPDAP + H
Sbjct: 53 GDVLTISSPAFADGAPIPEQYTCKGANIAPPLTWSAPFGGA----LVVDDPDAPREPYVH 108
Query: 90 WIAWNIPPVEEIPEGIPKQGEVEKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYV 149
WI I P G + E P I N G+ Y GPCPP G G HHY F +Y
Sbjct: 109 WIVIGIAP------GAGSTADGETPGGGISLPNSSGQPAYTGPCPPAGTGTHHYRFTLYH 162
Query: 150 LDTTLNLRPGATREELEKAMEGHIIQFGELVGLYE 184
L L A + + +Q L+G YE
Sbjct: 163 LPAVPPLAGLAGTQAARVIAQAATMQ-ARLIGTYE 196
>emb|CAC12881.1| (AJ291295) cold-regulated protein [Hordeum vulgare]
Length = 164
Score = 82.3 bits (200), Expect = 4e-15
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 11/154 (7%)
Query: 39 VFGNDEFIPAKYTCEGI----DVNPPLRIEGISENAKSLVIIVDDPDAPLGT-FTHWIAW 93
V +D +P +YT EG D++PPL G+ A+SL ++V D DA +THW+
Sbjct: 13 VSAHDGRLPRQYTLEGQGAKKDISPPLEWYGVPGGARSLALVVQDIDADERVPWTHWVVA 72
Query: 94 NIPPVEE-IPEGIPKQG---EVEKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYV 149
NI P E+ +PEG G + +G ND+ + G+ GP P HG H F++Y
Sbjct: 73 NISPEEKGLPEGFSGAGGNANAGGEGGLQEGVNDWKQPGWRGPVPD-SHG-HRIQFRLYA 130
Query: 150 LDTTLNLRPGATREELEKAMEGHIIQFGELVGLY 183
LD L+L T +++ +A+EGH++ EL ++
Sbjct: 131 LDDVLSLGNKVTVDKVMEAIEGHVLGEAELTAVF 164
>sp|Q9X9Z8|Y502_STRCO HYPOTHETICAL PROTEIN SCI5.02 >gi|7479208|pir||T36855 conserved
hypothetical protein SCI5.02 - Streptomyces coelicolor
>gi|5123530|emb|CAB45286.1| (AL079332) conserved
hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 179
Score = 77.3 bits (187), Expect = 1e-13
Identities = 40/98 (40%), Positives = 52/98 (52%), Gaps = 2/98 (2%)
Query: 56 DVNPPLRIEGISENAKSLVIIVDDPDAPLGT-FTHWIAWNIPP-VEEIPEGIPKQGEVEK 113
+ +P LR EG KS + DPDAP G+ F HW+ ++IP V E+P G
Sbjct: 43 NTSPHLRWEGFPAETKSFAVTCYDPDAPTGSGFWHWVVFDIPASVTELPVGAGSGAFEGL 102
Query: 114 PIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYVLD 151
P +Q RND+G G+ G PP G G H Y F VY +D
Sbjct: 103 PQGAVQARNDYGSKGFGGAAPPPGDGPHRYVFTVYAVD 140
>sp|O06235|YL40_MYCTU HYPOTHETICAL 18.6 KDA PROTEIN RV2140C >gi|7444667|pir||H70577
hypothetical protein Rv2140c - Mycobacterium
tuberculosis (strain H37RV) >gi|2104338|emb|CAB08653.1|
(Z95388) hypothetical protein Rv2140c [Mycobacterium
tuberculosis]
Length = 176
Score = 73.7 bits (178), Expect = 1e-12
Identities = 49/136 (36%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Query: 54 GIDVNPPLRIEGISENAKSLVIIVDDPDAP-LGTFTHWIAWNIPP-VEEIPEGIPKQGEV 111
G D +P LR G +S + V DPDAP L F HW N+P V E+PEG+ E+
Sbjct: 43 GADASPQLRWSGFPSETRSFAVTVYDPDAPTLSGFWHWAVANLPANVTELPEGVGDGREL 102
Query: 112 EKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYVLDT-TLNLRPGATREELEKAME 170
P + ND G Y G PP GHGVH Y+ V+ + L+L A+ L +
Sbjct: 103 --PGGALTLVNDAGMRRYVGAAPPPGHGVHRYYVAVHAVKVEKLDLPEDASPAYLGFNLF 160
Query: 171 GHIIQFGELVGLYERK 186
H I + G YE++
Sbjct: 161 QHAIARAVIFGTYEQR 176
>gb|AAA23513.1| (J04423) ORF 1 [Escherichia coli]
Length = 158
Score = 71.8 bits (173), Expect = 5e-12
Identities = 45/130 (34%), Positives = 69/130 (52%), Gaps = 10/130 (7%)
Query: 53 EGIDVNPPLRIEGISENAKSLVIIVDDPDAPLGT-FTHWIAWNIPP-VEEIPEGIPKQGE 110
+G +++P L + + KS V+ DPDAP G+ + HW+ N+P +P+G G
Sbjct: 26 DGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGS-GL 84
Query: 111 VEKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYVLD-TTLNLRPGATREELEKAM 169
V P ++Q R DFG+ GY+G PP+G H Y F V+ LD +++ GA+ AM
Sbjct: 85 VAMPDGVLQTRTDFGKTGYDGAAPPKGE-THRYIFTVHALDIERIDVDEGAS-----AAM 138
Query: 170 EGHIIQFGEL 179
G + F L
Sbjct: 139 VGFNVHFHSL 148
>sp|P12994|YBHB_ECOLI HYPOTHETICAL 17.1 KDA PROTEIN IN MODC-BIOA INTERGENIC REGION
>gi|7429184|pir||Q3ECBA conserved hypothetical protein
ybhB - Escherichia coli >gi|1786990|gb|AAC73860.1|
(AE000180) orf, hypothetical protein [Escherichia coli
K12]
Length = 158
Score = 71.4 bits (172), Expect = 7e-12
Identities = 38/101 (37%), Positives = 57/101 (55%), Gaps = 4/101 (3%)
Query: 53 EGIDVNPPLRIEGISENAKSLVIIVDDPDAPLGT-FTHWIAWNIPP-VEEIPEGIPKQGE 110
+G +++P L + + KS V+ DPDAP G+ + HW+ N+P +P+G G
Sbjct: 26 DGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGS-GL 84
Query: 111 VEKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYVLD 151
V P ++Q R DFG+ GY+G PP+G H Y F V+ LD
Sbjct: 85 VAMPDGVLQTRTDFGKTGYDGAAPPKGE-THRYIFTVHALD 124
>pir||C82243 conserved hypothetical protein VC1075 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655543|gb|AAF94234.1|
(AE004189) conserved hypothetical protein [Vibrio
cholerae]
Length = 180
Score = 70.2 bits (169), Expect = 2e-11
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 45 FIPAKYTCEGIDVNPPLRIEGISENAKSLVIIVDDPDAPLGT-FTHWIAWNIPPVEE-IP 102
F+ + C G +++P L + KS I DPDAP G+ + HW+A +I + +
Sbjct: 41 FVFNGFGCSGDNLSPQLSWNNAPKGTKSFAITAYDPDAPTGSGWWHWVALDIAADQHNVA 100
Query: 103 EGIPKQGEVEKPIHMIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYVL 150
G KQ + + ++ ND+G G+ G CPP+GHG+H Y F V+ L
Sbjct: 101 RGAAKQLKGVRELN-----NDYGFSGFGGACPPQGHGMHRYQFTVWAL 143
>gb|AAG03362.1| (AF024666) Ybhb [Corynebacterium striatum]
Length = 177
Score = 68.3 bits (164), Expect = 6e-11
Identities = 45/131 (34%), Positives = 63/131 (47%), Gaps = 4/131 (3%)
Query: 58 NPPLRIEGISENAKSLVIIVDDPDAPLGT-FTHWIAWNIPP-VEEIPEGIPKQGEVEKPI 115
+P L G E K+ + DPDAP + F HW A+NIP V E+P G + ++
Sbjct: 49 SPQLSWSGAPEGTKTYAVTCFDPDAPTASGFWHWSAFNIPADVTELPAGAGAKDDLGVGA 108
Query: 116 HMIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYVLDTTLNLRPGATREELEKAMEGHIIQ 175
++ G D G GY G PP GHG H Y F V+ +DT L A +L + H +
Sbjct: 109 VVLTG--DSGVKGYYGANPPAGHGPHRYLFAVHAVDTELPADEIANPTQLGFNLNFHSLG 166
Query: 176 FGELVGLYERK 186
+ G YE +
Sbjct: 167 RAIIWGWYENQ 177
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.146 0.457
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82626619
Number of Sequences: 2977
Number of extensions: 3968897
Number of successful extensions: 8298
Number of sequences better than 1.0e-10: 23
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 8247
Number of HSP's gapped (non-prelim): 23
length of query: 186
length of database: 189,106,746
effective HSP length: 47
effective length of query: 139
effective length of database: 160,977,857
effective search space: 22375922123
effective search space used: 22375922123
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)