BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0766 (PAB0766) DE:polysaccharide biosynthesis protein,
putative
(411 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75095 probable polysaccharide biosynthesis protein PAB0766... 811 0.0
pir||D71147 hypothetical protein PH0390 - Pyrococcus horikoshii ... 633 e-180
pir||F71152 probable lipopolysaccharide O-side chain biosynthesi... 201 9e-51
pir||A69149 O-antigen transporter related protein - Methanobacte... 194 1e-48
pir||A69144 succinoglycan biosynthesis transport protein - Metha... 179 6e-44
gb|AAD12960.1| (AF078135) unknown [Leptospira borgpetersenii] 129 6e-29
gb|AAD52177.1|AF144879_16 (AF144879) unknown [Leptospira interro... 128 1e-28
gb|AAC60766.1| (U46859) Wzx [Yersinia enterocolitica (type 0:8)] 120 3e-26
emb|CAB43612.1| (AJ239004) oligosaccharide repeat unit transport... 88 2e-16
pir||F69144 O-antigen transporter - Methanobacterium thermoautot... 85 1e-15
gi|11498203 polysaccharide biosynthesis protein, putative [Archa... 85 2e-15
emb|CAB52225.1| (Z98171) EpsU protein [Streptococcus thermophilus] 84 3e-15
dbj|BAA94395.1| (AB041266) O-antigen transporter [Actinobacillus... 81 2e-14
emb|CAB05927.1| (Z83335) unknown [Streptococcus pneumoniae] 81 3e-14
pir||B64433 probable O-antigen transporter homolog - Methanococc... 80 4e-14
pir||H75097 polysaccharide biosynthesis related protein PAB0783 ... 80 6e-14
pir||T50041 capsular polysaccharide synthesis protein 14L [valid... 79 8e-14
dbj|BAB07430.1| (AP001519) unknown conserved protein in others [... 79 8e-14
gb|AAD19923.1| (AF105116) putative oligosaccharide repeat unit t... 78 1e-13
gb|AAB66524.1| (AF004325) putative oligosaccharide repeat unit t... 78 2e-13
>pir||D75095 probable polysaccharide biosynthesis protein PAB0766 - Pyrococcus
abyssi (strain Orsay) >gi|5458577|emb|CAB50065.1|
(AJ248286) polysaccharide biosynthesis protein, putative
[Pyrococcus abyssi]
Length = 411
Score = 811 bits (2072), Expect = 0.0
Identities = 411/411 (100%), Positives = 411/411 (100%)
Query: 1 MEEGLKARLIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFS 60
MEEGLKARLIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFS
Sbjct: 1 MEEGLKARLIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFS 60
Query: 61 DLGVGYYFMREVARDKGKAKELLPDVLGFKIVLALLNFLVVVTLTLFLPKPGWMKILIIL 120
DLGVGYYFMREVARDKGKAKELLPDVLGFKIVLALLNFLVVVTLTLFLPKPGWMKILIIL
Sbjct: 61 DLGVGYYFMREVARDKGKAKELLPDVLGFKIVLALLNFLVVVTLTLFLPKPGWMKILIIL 120
Query: 121 AGAEGMLTWIAYLFVRIMYAHEVTKYEAIARVIERTWAFFVGGAVLYAYRSLTPFILVIL 180
AGAEGMLTWIAYLFVRIMYAHEVTKYEAIARVIERTWAFFVGGAVLYAYRSLTPFILVIL
Sbjct: 121 AGAEGMLTWIAYLFVRIMYAHEVTKYEAIARVIERTWAFFVGGAVLYAYRSLTPFILVIL 180
Query: 181 LGYTLREILRIKWGSQFLNTVKIRFKPGVWVSLLKESYPFWLIGLFTLIYYRTDMVMLSL 240
LGYTLREILRIKWGSQFLNTVKIRFKPGVWVSLLKESYPFWLIGLFTLIYYRTDMVMLSL
Sbjct: 181 LGYTLREILRIKWGSQFLNTVKIRFKPGVWVSLLKESYPFWLIGLFTLIYYRTDMVMLSL 240
Query: 241 MRGDYETGIYRAAYTLIEVSLFVPNIVVSTTMPSMARLWVEDRKTLNLLFRKSFQMLLGI 300
MRGDYETGIYRAAYTLIEVSLFVPNIVVSTTMPSMARLWVEDRKTLNLLFRKSFQMLLGI
Sbjct: 241 MRGDYETGIYRAAYTLIEVSLFVPNIVVSTTMPSMARLWVEDRKTLNLLFRKSFQMLLGI 300
Query: 301 GILGVAGYYVLARLGITIVFGEKFLPSVPVLRILAFAIPFMFLNSLFGSFMNATGRELTF 360
GILGVAGYYVLARLGITIVFGEKFLPSVPVLRILAFAIPFMFLNSLFGSFMNATGRELTF
Sbjct: 301 GILGVAGYYVLARLGITIVFGEKFLPSVPVLRILAFAIPFMFLNSLFGSFMNATGRELTF 360
Query: 361 TKITSFTALLNVVLNYILIRYYGASGAAVATVVSQVFLLFLAITKSKDEFR 411
TKITSFTALLNVVLNYILIRYYGASGAAVATVVSQVFLLFLAITKSKDEFR
Sbjct: 361 TKITSFTALLNVVLNYILIRYYGASGAAVATVVSQVFLLFLAITKSKDEFR 411
>pir||D71147 hypothetical protein PH0390 - Pyrococcus horikoshii
>gi|3256782|dbj|BAA29465.1| (AP000002) 408aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 408
Score = 633 bits (1615), Expect = e-180
Identities = 306/403 (75%), Positives = 350/403 (85%)
Query: 1 MEEGLKARLIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFS 60
M E LK +LIKNA WLFGAE+ISKLLAYGVIVILSRTLGPEGLGQYSFIFYY+GLLGIFS
Sbjct: 1 MSESLKLKLIKNAAWLFGAEIISKLLAYGVIVILSRTLGPEGLGQYSFIFYYVGLLGIFS 60
Query: 61 DLGVGYYFMREVARDKGKAKELLPDVLGFKIVLALLNFLVVVTLTLFLPKPGWMKILIIL 120
D G+ YYFMREVARDK KA+ELLPDVLG KIVLAL+NF V+ LTLFLPKP WMK+LI+L
Sbjct: 61 DFGISYYFMREVARDKSKAEELLPDVLGLKIVLALINFGVIAVLTLFLPKPRWMKVLILL 120
Query: 121 AGAEGMLTWIAYLFVRIMYAHEVTKYEAIARVIERTWAFFVGGAVLYAYRSLTPFILVIL 180
GAE M WI+Y+FV +MYAHEVTKYEAIAR IER WAFFVGG +LY YRSL+PFI+ +L
Sbjct: 121 VGAEAMFMWISYMFVNLMYAHEVTKYEAIARTIERVWAFFVGGTILYLYRSLSPFIIALL 180
Query: 181 LGYTLREILRIKWGSQFLNTVKIRFKPGVWVSLLKESYPFWLIGLFTLIYYRTDMVMLSL 240
+GY +RE LRIKWGS+F+ V+I F+ WV LL++SYPFWLIGLFTLIYYRTDMVMLSL
Sbjct: 181 VGYMIRESLRIKWGSKFVKKVRIYFRLKNWVFLLRKSYPFWLIGLFTLIYYRTDMVMLSL 240
Query: 241 MRGDYETGIYRAAYTLIEVSLFVPNIVVSTTMPSMARLWVEDRKTLNLLFRKSFQMLLGI 300
M+GDYETGIYRAAYTLIEVSLFVPNIVVSTTMPS+ARLW ED++TLN+L +KS Q+L+G+
Sbjct: 241 MKGDYETGIYRAAYTLIEVSLFVPNIVVSTTMPSIARLWKEDKRTLNILMKKSIQILVGL 300
Query: 301 GILGVAGYYVLARLGITIVFGEKFLPSVPVLRILAFAIPFMFLNSLFGSFMNATGRELTF 360
G L +AGY+V ARLGI IVFGEKFLPSVPVLR+LAFA+PFMFLNSLFGSF+NAT +E F
Sbjct: 301 GALALAGYFVFARLGILIVFGEKFLPSVPVLRVLAFAVPFMFLNSLFGSFLNATEKEGVF 360
Query: 361 TKITSFTALLNVVLNYILIRYYGASGAAVATVVSQVFLLFLAI 403
TKIT TALLNVVLNY+LI GA GAA AT++SQ L++
Sbjct: 361 TKITGLTALLNVVLNYLLIMNLGAKGAATATIISQGIATVLSV 403
>pir||F71152 probable lipopolysaccharide O-side chain biosynthesis protein
(O-antigen transpoter) - Pyrococcus horikoshii
>gi|3256824|dbj|BAA29507.1| (AP000002) 432aa long
hypothetical lipopolysaccharide O-side chain
biosynthesis protein (O-antigen transpoter) [Pyrococcus
horikoshii]
Length = 432
Score = 201 bits (507), Expect = 9e-51
Identities = 125/402 (31%), Positives = 216/402 (53%), Gaps = 12/402 (2%)
Query: 8 RLIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFSDLGVGYY 67
R+ KN LF A ++S L + ++ +R LGP G SF G+ G+ ++ G+
Sbjct: 6 RIAKNMAVLFLARIVSMLFGFFYVMYTARHLGPANYGILSFALALNGIFGVIANFGLDPL 65
Query: 68 FMREVARDKGKAKELLPDVLGFKIVLALLNFLVVVTLTLFLPKPGWMKILIILAGAEGML 127
+REVARDK A++ L + L K++ L FL+V + L P + ++ + ++
Sbjct: 66 TVREVARDKTLARKYLANGLVLKLLFGTLTFLIVFVVVNLLGYPEITRKVVYIITLSTII 125
Query: 128 TWIAYLFVRIMYAHEVTKYEAIARVIERTWAFFVGGAVLYAYRSLTPFILV------ILL 181
+ LF I A E ++ +I ++++ + + ++ F ++ I+L
Sbjct: 126 AGLNNLFNDIYQAFERMEFISIGQILQSVCSLIFAIIAIKLGLNVVYFAVIYLIVNSIVL 185
Query: 182 GYTLREILRIKWGSQFLNTVKIRFKPGVWVSLLKESYPFWLIGLFTLIYYRTDMVMLSLM 241
GY ++ W +FL KI W S+++E++PF + +F IYY+ D+VMLS M
Sbjct: 186 GY---HVVITTW--KFLKP-KIEVDFNFWKSVVREAWPFAVTSIFVSIYYQIDIVMLSYM 239
Query: 242 RGDYETGIYRAAYTLIEVSLFVPNIVVSTTMPSMARLWVEDRKTLNLLFRKSFQMLLGIG 301
+GD G Y AAY L+ + L +P I +T P M++ + + +L +F +SF+ ++ IG
Sbjct: 240 KGDKIVGWYNAAYRLVLILLIIPQIYFATVYPVMSKFYSISKDSLRSIFERSFKYMMIIG 299
Query: 302 ILGVAGYYVLARLGITIVFGEKFLPSVPVLRILAFAIPFMFLNSLFGSFMNATGRELTFT 361
I G +LA I +V+G++F P+ L+IL ++ F+N +F + +NAT L T
Sbjct: 300 ISIGLGITLLADKIILLVYGDEFAPATIALQILVWSEVISFVNIVFANLLNATNNSLLNT 359
Query: 362 KITSFTALLNVVLNYILIRYYGASGAAVATVVSQVFLLFLAI 403
K T +A+LNV+LN+ILI Y GA +ATV++++ L + I
Sbjct: 360 KQTLISAILNVILNFILIPKYSYIGAGLATVLTKIVSLIILI 401
>pir||A69149 O-antigen transporter related protein - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621440|gb|AAB84885.1| (AE000823) O-antigen
transporter related protein [Methanobacterium
thermoautotrophicum]
Length = 475
Score = 194 bits (489), Expect = 1e-48
Identities = 120/402 (29%), Positives = 207/402 (50%), Gaps = 8/402 (1%)
Query: 9 LIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFSDLGVGYYF 68
L +N +L A + + L A+ V L+R LG G G S G+ I +DLG+G Y
Sbjct: 10 LARNTAFLLVATLFTNLAAFVWNVYLARYLGTAGFGILSTALALTGIFSILADLGIGTYI 69
Query: 69 MREVARDKGKAKELLPDVLGFKIVLALLNFLVVVTLTLFLPKPGWMKILIILAGAEGMLT 128
RE+AR+ G A+EL+ LG +I+L+ + F++++ L G +I+ +LT
Sbjct: 70 TREIARNPGGARELVAAGLGNRIILSCIVFVLILLFPLTGLYSGTAAAVIVFIAGYMLLT 129
Query: 129 WIAYLFVRIMYAHEVTKYEAIARVIERTWAFFVGGAVLYAYRSLTPFILVILLGYTLREI 188
+ F I + +Y+ + ++ F + G + + L ++ + + Y +
Sbjct: 130 SFSSFFNSIFQGFQRMEYQTVWNILNSL--FILVGVIAVVW--LGGSVVHVAVAYLIAAA 185
Query: 189 LRIKWGSQFLNTVKIRFKPGVWVS--LLKESYPFWLIGLFTLIYYRTDMVMLSLMRGDYE 246
L + + + + F PG+ S +++E+ PF + +F+LIY+ D VMLSLM+GD
Sbjct: 186 LSLVYSATTFT--RRFFTPGLSFSRDMIREAIPFGITSVFSLIYFWIDSVMLSLMKGDVS 243
Query: 247 TGIYRAAYTLIEVSLFVPNIVVSTTMPSMARLWVEDRKTLNLLFRKSFQMLLGIGILGVA 306
G+Y A Y L+ V + + ++ P M+R VE +L + +S + L+ I + +
Sbjct: 244 VGLYNAPYRLLTVITSLYGVYLTAVFPVMSRFHVESEDSLRFTYMRSLKYLIIIAVPLIF 303
Query: 307 GYYVLARLGITIVFGEKFLPSVPVLRILAFAIPFMFLNSLFGSFMNATGRELTFTKITSF 366
+ LA I ++F K+L SVP LR+L A FMF+N + S + + R++T T+IT
Sbjct: 304 TVFTLAGPLIELIFSAKYLESVPALRVLIIATAFMFINGVSSSLLGSANRQITVTRITGV 363
Query: 367 TALLNVVLNYILIRYYGASGAAVATVVSQVFLLFLAITKSKD 408
AL NV LN LI + GA+ ATV+++ + L + +D
Sbjct: 364 AALFNVTLNLALIPRFDFMGASAATVMTEALMTLLFLRTVRD 405
>pir||A69144 succinoglycan biosynthesis transport protein - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621399|gb|AAB84848.1| (AE000819) succinoglycan
biosynthesis transport protein [Methanobacterium
thermoautotrophicum]
Length = 477
Score = 179 bits (449), Expect = 6e-44
Identities = 122/400 (30%), Positives = 205/400 (50%), Gaps = 11/400 (2%)
Query: 8 RLIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFSDLGVGYY 67
R++KN G A++++ L+++ ++ L+R LG G G+Y+F F LL F+DLGV
Sbjct: 6 RIVKNIGVTGSAQILTALMSFVFMIYLARFLGEAGFGKYNFAFSLTTLLVTFTDLGVNQL 65
Query: 68 FMREVARDKGKAKELLPDVLGFKIVLALLNFLVVVTLTLFLPKPGWMKILIILAGAEGML 127
+RE+AR++ + + + + KI L++L F+++ L IL+ L G +L
Sbjct: 66 LVREIARERDLSSYYVNNAVFLKIPLSILTFVLIAVLAWTFNLSSDASILLYLFGIYNIL 125
Query: 128 TWIAYLFVRIMYAHEVTKYEAIARVIERTWAFFVG-GAVLYAYRSLTPFILVILLGYTLR 186
++ ++ + A E +Y A+ ++IER + +G G ++ Y ++V+ Y
Sbjct: 126 LTVSGTYLSLFQAWERMEYVALFQIIERLFIVTLGLGVLIMGYG-----LMVVAWVYVFA 180
Query: 187 EILRIKWGSQFLNTVKIR----FKPGVWVSLLKESYPFWLIGLFTLIYYRTDMVMLSLMR 242
IL I + IR G+ LL PF L LF + +++ D V+L L+R
Sbjct: 181 GILDIAVAASLSFRRFIRPSRSIDTGLQKKLLLMGLPFGLNSLFAVFFFKIDTVLLGLLR 240
Query: 243 GDYETGIYRAAYT-LIEVSLFVPNIVVSTTMPSMARLWVEDRKTLNLLFRKSFQMLLGIG 301
D GIY AAY L+ +S+ V +V + P M+R + ED +L+ R S + L G
Sbjct: 241 DDVAVGIYNAAYNPLLALSMIVAGMVSAAVYPVMSRYFREDAGSLSGFTRISSRYLAIAG 300
Query: 302 ILGVAGYYVLARLGITIVFGEKFLPSVPVLRILAFAIPFMFLNSLFGSFMNATGRELTFT 361
AG VLA I + + + +VP +ILA IP ++++ G+ +++ R+
Sbjct: 301 FPVAAGCLVLADRFIGLFYAGGYSGAVPAFQILALFIPIRLVSTITGTLLSSIDRQGYRM 360
Query: 362 KITSFTALLNVVLNYILIRYYGASGAAVATVVSQVFLLFL 401
+A N+VLN ILI YY GAA ATV+S++ L L
Sbjct: 361 LSVGISAAFNIVLNMILIPYYSYIGAAAATVLSELLLYIL 400
>gb|AAD12960.1| (AF078135) unknown [Leptospira borgpetersenii]
Length = 447
Score = 129 bits (321), Expect = 6e-29
Identities = 116/411 (28%), Positives = 197/411 (47%), Gaps = 47/411 (11%)
Query: 9 LIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFSDLGVGYYF 68
++ N+GWLF ++ + + V ++R LGP+ G+ +++ YI L+G F++LG+
Sbjct: 15 ILYNSGWLFFDKIFRMGMGMFLGVWIARYLGPDSYGKLNYVIAYIALIGSFTNLGLDGVV 74
Query: 69 MREVARDKGKAKELLPDVLGFKIVLALLNFLVVVTLTLFLPKPGWMKILIILAGAEGMLT 128
+RE+ ++K +E+L +++ ++ F V + L + +L E L
Sbjct: 75 VRELIKEKAHKEEILSTSFLLQLIAGIIAFAVAILL------------IPLLRPDESDLF 122
Query: 129 WIAYL--FVRIMYAHEVTKYEAIARVIERTWAF--------FVGGAVLYAYRSL--TPFI 176
W+ +L I A V +Y A+V+ + + + F G +L L PFI
Sbjct: 123 WMVFLVGLTLIFRAVSVVRYWYEAQVLSKYFVWLDNGLFFVFSGVRILLILNGLGIFPFI 182
Query: 177 -------LVILLGYTLREILRIKWGSQFLNTVKIRFKPGVWVSLLKESYPFWLIGLFTLI 229
+ L GY+ L K+ + L+ + ++ +LL++S+ L GL ++
Sbjct: 183 WTGLIESSISLFGYS----LLYKYHNGSLSVLHANWRRA--RTLLRDSWMLLLSGLAVIV 236
Query: 230 YYRTDMVMLSLMRGDYETGIYRAAYTLIEVSLFVPNIVVSTTMPSM--ARLWVEDRKTLN 287
Y R D +M+ M GD GIY AA + EV F+P V S+ P++ A+ + ++
Sbjct: 237 YMRIDQIMIGQMMGDEAVGIYTAAVKISEVWYFIPMAVASSIFPAILKAKEFSQELYLER 296
Query: 288 LLFRKSFQMLLGIGILGVAGYYVLARLGITIVFGEKFLPSVPVLRILAFAIPFMFL---N 344
L SF LL + I L+ I + FGEKF + VL I +A F+FL +
Sbjct: 297 LGLLHSFMFLLALMI--AIPMTFLSDPIIRLFFGEKFSEAGNVLAIHIWAGIFVFLGVAS 354
Query: 345 SLFGSFMNATGRELTFTKITSFTALLNVVLNYILIRYYGASGAAVATVVSQ 395
S + N EL + I+ + N++LNY LI G GAA+ATV+SQ
Sbjct: 355 SRYYLTENLPKGEL-YKSISG--CMTNIILNYFLIPLCGIKGAAIATVISQ 402
>gb|AAD52177.1|AF144879_16 (AF144879) unknown [Leptospira interrogans]
Length = 447
Score = 128 bits (318), Expect = 1e-28
Identities = 114/425 (26%), Positives = 203/425 (46%), Gaps = 50/425 (11%)
Query: 9 LIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFSDLGVGYYF 68
++ N+GWLF ++ + + V ++R LGP+ G+ +++ YI L+G F++LG+
Sbjct: 15 ILHNSGWLFFDKIFRMGMGMFLGVWIARYLGPDSYGKLNYVIAYIALIGSFTNLGLDGVV 74
Query: 69 MREVARDKGKAKELLPDVLGFKIVLALLNFLVVVTLTLFLPKPGWMKILIILAGAEGMLT 128
+RE+ ++K + +E++ +++ + + G + ++ IL E L
Sbjct: 75 VRELIKEKAQKQEIISTSFLLQLIAGIFAY------------GGAILLIPILRPDESDLF 122
Query: 129 WIAYL--FVRIMYAHEVTKYEAIARVIERTWAFFVGGAVLYAYRSLTPFILVILLGYTLR 186
W+ +L I + V KY A+V+ + + + G + + + + IL+IL G+ +
Sbjct: 123 WMVFLVGLTLIFRSVGVIKYWYEAQVLSKYFVWLENG-LFFVFSGVR--ILLILNGFGVF 179
Query: 187 EILRI----------------KWGSQFLNTVKIRFKPGVWVSLLKESYPFWLIGLFTLIY 230
+ + K+ + L+ + +K +LL++S+ L GL ++Y
Sbjct: 180 AFIWVGLIESFISLFGYSLLYKYHNGSLSVLHANWKRA--QTLLRDSWMLLLSGLAVIVY 237
Query: 231 YRTDMVMLSLMRGDYETGIYRAAYTLIEVSLFVPNIVVSTTMPSMARLWVEDRKTL--NL 288
R D +M+ M GD G+Y AA + EV F+P + S+ P++ + +K L
Sbjct: 238 MRIDQIMIGQMMGDEAVGVYTAAVKISEVWYFIPMTIASSIFPAILKAKEFSQKLYLERL 297
Query: 289 LFRKSFQMLLGIGILGVAGYYVLARLGITIVFGEKFLPSVPVLRILAFAIPFMFL---NS 345
SF LL + I L+ I + FGEKF + +L I +A F+FL +S
Sbjct: 298 SLLHSFMFLLALMI--AIPMTFLSDPIIQMFFGEKFSEAGVILAIHIWAGIFVFLGVASS 355
Query: 346 LFGSFMNATGRELTFTKITSFTALLNVVLNYILIRYYGASGAAVATVVSQ-----VFLLF 400
+ N EL + I+ L N+VLNY LI YG GAA+ATV+SQ +F LF
Sbjct: 356 RYYLTENLPKGEL-YKSISG--CLANIVLNYFLIPLYGIKGAAIATVISQFIASTLFNLF 412
Query: 401 LAITK 405
T+
Sbjct: 413 FKRTR 417
>gb|AAC60766.1| (U46859) Wzx [Yersinia enterocolitica (type 0:8)]
Length = 429
Score = 120 bits (298), Expect = 3e-26
Identities = 101/413 (24%), Positives = 201/413 (48%), Gaps = 18/413 (4%)
Query: 8 RLIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFSDLGVGYY 67
+ ++N+GWL ++ S + V ++L++ LGP GQ + Y+ S LG+
Sbjct: 17 KALRNSGWLIFDKIASLTIGLWVGILLAKYLGPANYGQIVYAVTYVTFFQTISILGLDSI 76
Query: 68 FMREVARDKGKAKELLPDVLGFKIVLALLNFLVVVTLTLFLPKPGWMKILIILAGAEGML 127
+R+++ K ++ + + +++++ ++ ++L + +P IL I++ +L
Sbjct: 77 VVRDLSNGVEKCSAIISTIFTARFLMSMVCLIIAISLA-YNSRPDKRLILSIIS--LNIL 133
Query: 128 TWIAYLFVRIMYAHEVTKYEAIARVIERTWAFFVGGAVLYAYRSLTPFILVILLGYTLRE 187
+ +F ++ + ++ A++I + V ++Y + L F ++I++ L
Sbjct: 134 FSVGSVFDYLVQSQSKSRLTICAKLISYIFCAHVKIFMIYLHVELINFSIIIVIEVLLYS 193
Query: 188 ILRIKWGSQFLNTVKIRFK-PGVWV-SLLKESYPFWLIGLFTLIYYRTDMVMLSLMRGDY 245
+ ++ + +K+ V++ S LKES+P L +I+ +++++ + M GD
Sbjct: 194 SILYFLMNKNYSEIKVSLSINSVYLKSALKESWPLMLSAFSVVIFMKSNILFIQHMLGDN 253
Query: 246 ETGIYRAAYTLIEVSLFVPNIVVSTTMPSMARLWVEDRKTLNLLF-RKSFQMLLG----I 300
GIY L E++ F P I+V++ +P +A+L ++ +L F R F M G +
Sbjct: 254 YVGIYSVGANLAELTYFFPAIIVTSFLPILAKLKEKNISEYHLFFHRLMFFMWWGSIFIV 313
Query: 301 GILGVAGYYVLARLGITIVFGEKFLPSVPVLRI-LAFAIPFMFLNSLFGSFMNATGRELT 359
+ G GY++ I ++G KF S + I + IP N+ + +N R
Sbjct: 314 IVFGGIGYFL-----IPYIYGIKFEQSKYIFIIHVITLIPVCVANAQYIWIINER-RSKM 367
Query: 360 FTKITSFTALLNVVLNYILIRYYGASGAAVATVVSQVFLLFLAIT-KSKDEFR 411
F T A L + LNY LIR G GA VAT++SQ+F + I+ SK+ F+
Sbjct: 368 FLVQTLTCAFLAITLNYFLIRKLGLIGAPVATLISQLFQCLILISFLSKNLFK 420
>emb|CAB43612.1| (AJ239004) oligosaccharide repeat unit transporter [Streptococcus
pneumoniae]
Length = 486
Score = 87.8 bits (214), Expect = 2e-16
Identities = 88/388 (22%), Positives = 178/388 (45%), Gaps = 24/388 (6%)
Query: 34 LSRTLGPEGLGQYSFIFYYIGLLGIFSDLGVGYYFMREVA---RDKGKAKELLPDVLGFK 90
+SR L +GLG+ +F I F+ LG+ Y ++ A ++K K + + ++L
Sbjct: 31 VSRVLMADGLGRVTFASSIIDYALTFAMLGMPLYGVKVCAGYIKNKEKLSQTVRELLVIN 90
Query: 91 IVLALLNFLVVVTLTLFLPK--PGWMKILIILAGAEGMLTWIAYLFVRIMYAHEVTKYEA 148
+++ L L++ T+ + +P+ W I+I + + I +L+ + ++
Sbjct: 91 LLVGFLVMLLLATMVIIIPRFRQEWQLIIITSSTIPLNIIGIEWLYKALEDYSYISIRTL 150
Query: 149 IARVIERTWAFFV----GGAVLYAYRSLTPFILVILLGYTLREILRIKWGSQFLNTVKIR 204
+++ F V ++YA ++ +L + ++ SQ LN +K
Sbjct: 151 TFKILGFLLMFLVVRTKDDYMVYAAITVLASHGSFILNFFRSRTFLLENISQRLN-LKQH 209
Query: 205 FKPGVWVSLLKESYPFWLIGLFTLIYYRTDMVMLSLMRGDYETGIYRAAYTLIEVSLFVP 264
KP + + L S+ IY TD+VM+ + D E G Y A + + L V
Sbjct: 210 IKPLLILFFLSVSWT---------IYKNTDVVMMGFLTSDTEIGYYSTALKIRSIVLSVV 260
Query: 265 NIVVSTTMPSMARLWVEDR-KTLNLLFRKSFQMLLGIGILGVAGYYVL-ARLGITIVFGE 322
+ + +P + + + E + + KS ++ + L GY V+ AR I + G
Sbjct: 261 TSLGTVVLPRLVKYYKEGKYNEAKKILNKSSSFIM-LSSLYFIGYIVINAREIILFIAGR 319
Query: 323 KFLPSVPVLRILAFAIPFMFLNSLFG-SFMNATGRELTFTKITSFTALLNVVLNYILIRY 381
+L ++P L++ F+ F+ + ++G + + + G+E + + +LN+ LN+I+I
Sbjct: 320 NYLGAIPTLQVSIFSAIFVGYSIMYGTNILVSIGKENVTIQASIIGVVLNICLNFIMIPK 379
Query: 382 YGASGAAVATVVSQ-VFLLFLAITKSKD 408
+ A GA +AT + + V +L+ I KD
Sbjct: 380 FAALGAGIATSIGEAVMVLYEIIYLGKD 407
>pir||F69144 O-antigen transporter - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621404|gb|AAB84853.1| (AE000819)
O-antigen transporter [Methanobacterium
thermoautotrophicum]
Length = 420
Score = 85.4 bits (208), Expect = 1e-15
Identities = 92/402 (22%), Positives = 179/402 (43%), Gaps = 20/402 (4%)
Query: 8 RLIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFSDLGVGYY 67
R++ N L G +++ LL L+R LGP G+ +F +I I +D G +
Sbjct: 14 RVLDNIISLTGIQLVQYLLPLITFPYLTRVLGPANFGKVAFAVAFITYFQILTDYGFNFS 73
Query: 68 FMREVA---RDKGKAKELLPDVLGFKIVLALLNFLVVVTLTLFLP---KPGWMKILIILA 121
RE++ D + + V+ K +L + F+ ++ +T+FL + ++ +
Sbjct: 74 ATREISIHRDDTERVSLIYSSVMVTKTILLAVTFMAML-VTVFLIDRFRSDYLLYIFTYG 132
Query: 122 GAEGMLTWIAYLFVRIMYAHEVTKYEAIARVIERTWAFF-VGGAVLYAYRSLTPFILVIL 180
G L + + F + ++ ++ +I F V G Y Y L +
Sbjct: 133 LVVGNLLFPVWFFQGVERMRYISILRIVSSLIYTALIFLAVRGPGDYLYVPLINSAGFMA 192
Query: 181 LGYTLREILRIKWGSQFLNTVKIRFKPGVWVSLLKESYPFWLIGLFTLIYYRTDMVMLSL 240
+G + I+ ++G +F+ P L E + ++ L +Y ++ +L L
Sbjct: 193 VGLYSQRIVMREFGVKFMIP-----SPADIREQLLEGWHLFISTLAISLYTTSNRFILGL 247
Query: 241 MRGDYETGIYRAAYTLIEVSLFVPNIVVSTTMPSMARLWVEDRKTLNLLFRKSFQMLLGI 300
+ G Y A + + + + P +R+ +DR+ RK ML+ +
Sbjct: 248 LVSSATLGYYAVAEDITRALQGIVSPISQAIYPYFSRIQKDDRERAKYELRK---MLIFM 304
Query: 301 GIL--GVAGYYV-LARLGITIVFGEKFLPSVPVLRILAFAIPFMFLNSLFG-SFMNATGR 356
G+L G++ V LA L + I+ G + S+P+L+IL F I + N++ G + + G
Sbjct: 305 GVLTFGLSVALVFLAPLIVGILAGPSYDESIPLLQILVFIIFAIGANNILGVQGLVSFGY 364
Query: 357 ELTFTKITSFTALLNVVLNYILIRYYGASGAAVATVVSQVFL 398
+ FT+I F +++V L L+ G++GAAVA V +++ +
Sbjct: 365 KEKFTRIVIFAGVVHVGLLLGLVMLLGSAGAAVAVVTTEIII 406
>gi|11498203 polysaccharide biosynthesis protein, putative [Archaeoglobus
fulgidus] >gi|7483918|pir||C69324 polysaccharide
biosynthesis protein homolog - Archaeoglobus fulgidus
>gi|2650029|gb|AAB90646.1| (AE001064) polysaccharide
biosynthesis protein, putative [Archaeoglobus fulgidus]
Length = 482
Score = 84.7 bits (206), Expect = 2e-15
Identities = 107/421 (25%), Positives = 169/421 (39%), Gaps = 45/421 (10%)
Query: 5 LKARLIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFSDLGV 64
L R++KN + + +I L + + ++R L PE G YS LL F+DLG+
Sbjct: 2 LARRVLKNVIYNSSSVLIGNLAGLVISIYVARVLKPELFGIYSLAISVAFLLMTFTDLGI 61
Query: 65 GYYFMREVARDKGKAKELLPDVLGFKIVLALLNFLVVVTLTL------------FLPKPG 112
+R VA K + L V G+ L L L+V+ + F KP
Sbjct: 62 NATLVRYVAHANIKGDDEL--VRGYIRSLTKLKALLVLAVASMLFLGSDFIAEQFFSKPE 119
Query: 113 W---MKILIILAGAEGMLTWIAYLFVRIMYAHEVTKYEAIARVIERTWAFF--------V 161
++I+ + M +I +F + A+ I R F V
Sbjct: 120 LSLPLRIMALYITFFSMAGFINGIF-NAFNDFKANFVRALVYEISRATLIFLLLYLGLSV 178
Query: 162 GGAVLYAYRSLTPFILVILLGYTLREILRIKWGSQFLNTVKIRFKPGVWVSLLKESYPFW 221
GA+L Y + L+ LL R++ +G + K W +++ +
Sbjct: 179 AGALL-GYVGASLLSLIALLAMLFRKLRNFLFG---------KAKRVDWRRIVRFTGYLT 228
Query: 222 LIGLFTLIYYRTDMVMLSLMRGDYETGIYRAAYTLIEVSLFVPNIVV--STTMPSMARLW 279
+ + ++ D VM+ M + G YRAAY ++ V IV P +L
Sbjct: 229 VGSITWTVFAYVDSVMIGAMLPSEDVGFYRAAYNIVGA---VSGIVALPGVLFPVFVQLE 285
Query: 280 VEDRKTLNLLFRKSFQMLLGIGILGVAGYYVLARLGITIVFGEKFLPSVPVLRILAFAIP 339
ED L F + F+ I G V+A + V+G +L + V+ +L+ I
Sbjct: 286 SED---LRSAFSRVFRYASIIAFPCTFGLMVIAEPLVKFVYGADYLQAAGVMVVLSILIL 342
Query: 340 FMFLNSLFGSFMNATGRELTFTKITSFTALLNVVLNYILIRYYGASGAAVATVVSQVFLL 399
L +G+ NA T F +LNVVLNY+ I G GAA+ATV+S F+
Sbjct: 343 RSALG-FWGALFNAKEMPEYPVYATFFGMILNVVLNYVFILRMGIVGAAIATVMSNAFVW 401
Query: 400 F 400
F
Sbjct: 402 F 402
>emb|CAB52225.1| (Z98171) EpsU protein [Streptococcus thermophilus]
Length = 471
Score = 83.9 bits (204), Expect = 3e-15
Identities = 88/407 (21%), Positives = 185/407 (44%), Gaps = 24/407 (5%)
Query: 8 RLIKNAGWLFGA--EVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFSDLGVG 65
+++KN +L+ A +V ++ I LSR LGP G+G S+ + +F +G+G
Sbjct: 2 QIVKN--YLYNAIYQVFIIIVPLLTIPYLSRILGPSGIGINSYTNSIVQYFVLFGSIGLG 59
Query: 66 YYFMREVA--RDKG-KAKELLPDVLGFKIVLALLNFLVVVTLTLFLPK--PGWMKILIIL 120
Y R++A RD K ++ ++ ++ L + + V + + ++ I +
Sbjct: 60 LYGNRQIAFVRDNQVKMSKVFYEIFILRLFTICLAYFLFVAFLIINGQYYAYYLSQSIAI 119
Query: 121 AGAEGMLTWIAYLFVRIMYAHEVTKYEAIARVIERTWAFFVGGAVLYAYRSLTPFILVIL 180
A ++W A++ + E K + I + A F + +Y L +IL+ +
Sbjct: 120 VAAAFDISW-AFMGI------ENFKVIVLRNFIVKLLALFSIFLFVKSYNDLNIYILITV 172
Query: 181 LGYTLREILRIKWGSQFLNTVKIRFKPGVWVSLLKESYPFWLIGLFTLIYYRTDMVMLSL 240
L + + ++L VK+ ++ + LK+S ++ + IY+ + ML
Sbjct: 173 LSTLIGNLTFFPSLHRYL--VKVNYRELRPIKHLKQSLVMFIPQIALQIYWVLNKTMLGS 230
Query: 241 MRGDYETGIYRAAYTLIEVSLFVPNIVVSTTMPSMARLWVE-DRKTLNLLFRKSFQMLLG 299
+ +G + + ++++ L + + +P +A + + + F +
Sbjct: 231 LDSVTSSGFFDQSDKIVKLVLAIVTATGTVMLPRVANAFAHREYSKIKEYMYAGFSFVSA 290
Query: 300 IGILGVAGYYVLARLGITIVFGEKFLPSVPVLRILAFAIPFM-FLNSLFGSFMNATGREL 358
I I + G + + + F +F +PVL I + AI F+ + N++ ++ T +
Sbjct: 291 ISIPMMFGLIAITPKFVPLFFTSQFSDVIPVLMIESIAIIFIAWSNAIGNQYLLPTNQNK 350
Query: 359 TFTKITSFTALLNVVLNYILIRYYGASGAAVATVVSQ----VFLLFL 401
++T A++N++LN LI Y GA GA++ATV+S+ V+ LF+
Sbjct: 351 SYTVSVIIGAIVNLMLNIPLIIYLGAVGASIATVISEMSVTVYQLFI 397
>dbj|BAA94395.1| (AB041266) O-antigen transporter [Actinobacillus
actinomycetemcomitans]
Length = 425
Score = 81.1 bits (197), Expect = 2e-14
Identities = 93/406 (22%), Positives = 177/406 (42%), Gaps = 22/406 (5%)
Query: 8 RLIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFSDLGVGYY 67
+L++N LF + ++ +L + L R LG E G SF+ I +F+D G
Sbjct: 16 KLLENFISLFLLQGMNYILPLLLFPYLVRVLGVENFGILSFVTAVIAYFILFTDYGFNIT 75
Query: 68 FMREVARDK---GKAKELLPDVLGFKIVLALLNFLVVVTLTLFLPKPGWMKILIILAGAE 124
R+++ +K K E+ V+ K++L + +FLV+ L + GW K I
Sbjct: 76 ATRDISINKDNNNKVSEIFSSVIIIKLLLGIFSFLVLYVLVYTV--QGWKKYNYIYFLTF 133
Query: 125 GMLTWIAYLFVRIMYAHEVTKYEAIARVIERTWAFFVGGAVLYAYRSLTPFILVILLGYT 184
G + L + E K+ AI V+ R + +++ Y I + L +
Sbjct: 134 GSILGQILLPIWFYQGMEKMKFFAIFNVLAR----IISTILIFLYVKEPEDIYFVPLVNS 189
Query: 185 LREILRIKWGSQFL---NTVKIRF---KPGVWVSLLKESYPFWLIGLFTLIYYRTDMVML 238
+ I I G+ FL IRF + V + K + +L F+ Y ++++L
Sbjct: 190 IAMI--ISGGTSFLVIRTLFNIRFQIQRFEVLIYYFKNGWNVFLSMFFSNFYRNFNILVL 247
Query: 239 SLMRGDYETGIYRAAYTLIEVSLFVPNIVVSTTMPSMARLWVEDRKTLNLLFRKSFQMLL 298
L+ D G Y A LI++ +IV + P + ++++ + K F ++
Sbjct: 248 GLLTNDLFVGYYAIAEKLIKIIQVSQDIVGNVLFPYFSEKFIKNNQYFFNFNNKFFPYIV 307
Query: 299 G-IGILGVAGYYVLARLGITIVFGEKFLPSVPV-LRILAFAIPFMFLNSLFGSF-MNATG 355
IL + Y++ +L +F E SV + ++I++ I LN FG + + G
Sbjct: 308 SCYFILWFSTYFLSDQL--AQLFNEDVNGSVSLDIKIMSIVILIGGLNYYFGILGLLSMG 365
Query: 356 RELTFTKITSFTALLNVVLNYILIRYYGASGAAVATVVSQVFLLFL 401
+ F+ T + N+ ++++ + ++ GA+ + V S+ LL +
Sbjct: 366 KNKYFSDCIIITGISNIFISFLFVYFWDDIGASFSLVASEFILLIM 411
>emb|CAB05927.1| (Z83335) unknown [Streptococcus pneumoniae]
Length = 346
Score = 80.8 bits (196), Expect = 3e-14
Identities = 55/221 (24%), Positives = 99/221 (43%), Gaps = 7/221 (3%)
Query: 176 ILVILLGYTLREILRIKWGSQFLNTVKIRFKPGV--WVSLLKESYPFWLIGLFTLIYYRT 233
I ++ L Y + E LRI + N + + + ++ K + ++ L Y
Sbjct: 116 IKMVFLVYAINEFLRIILFLYYYNMFPVFEHISIKEFFTIYKFGFLSMILTLLITFNYSI 175
Query: 234 DMVMLSLMRGDYETGIYRAAYTLIEVSLFVPNIVVSTTMPSMARLWVEDRKTLNLLFRKS 293
D++ML M Y GIY A T + L VP+ A+ E K +N + + S
Sbjct: 176 DIIMLKQMSSSYNVGIYSVAVTFSNMFLMVPDSFKEILFGDSAKRTFEKNKAINAI-KVS 234
Query: 294 FQMLLGIGILGVAGYYVLARLGITIVFGEKFLPSVPVLRILAFAIPFMFLNSLFGSFMNA 353
F + IL + G+ IT+++G ++ + P+ ++ M + +
Sbjct: 235 FLFM----ILLIIGFLSFGEFAITLLYGSSYIKAFPITLVIFLGSLSMIFFKILQPIYIS 290
Query: 354 TGRELTFTKITSFTALLNVVLNYILIRYYGASGAAVATVVS 394
G++ KI S +AL+N+ LN+ LI Y +GAA+A+ +S
Sbjct: 291 QGKQSVAIKILSVSALINISLNWYLIPNYQITGAAIASAIS 331
>pir||B64433 probable O-antigen transporter homolog - Methanococcus jannaschii
>gi|1591720|gb|AAB99070.1| (U67549) polysaccharide
biosynthesis protein (capF) isolog [Methanococcus
jannaschii]
Length = 507
Score = 80.4 bits (195), Expect = 4e-14
Identities = 89/426 (20%), Positives = 174/426 (39%), Gaps = 52/426 (12%)
Query: 6 KARLIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFSDLGVG 65
K + +K W + ++ +AY V V+ + + +G + + + +L +F G+
Sbjct: 4 KEKAVKGVSWHLLSYFLAAPIAYLVRVLYANEIPKLDVGLFYAVLDFFSMLVVFRAFGLD 63
Query: 66 YYFMREVAR--DKGKAKELLPDVLGFKIVLALLNFLVVVTLTLFLPKPGW---------- 113
+R + + + + L ++ I+ +L F+V + +F P
Sbjct: 64 QALIRYIPKYLAENRLDMLKSSIVFVGILQTILAFIVAFLVVIFAPYIAEFYINNQGQFT 123
Query: 114 ------MKILIILAGAEGMLTWIAYLFVRIMYAHEVTKYEAIARVIERTWAFFVGGAVLY 167
+ ILII+A L I F I+ ++ Y + RV+ F +Y
Sbjct: 124 GRLDLVINILIIMAMGYYFLDSIVAFFSNILTGFQLQNYASSTRVVRILSVFIFSLIFIY 183
Query: 168 AYRS-----------LTPFILVILLGYTLREILRIKWGSQFLNTVKIRFKPGVWVSLLKE 216
+ L +++I+ GY + + + K+ + K+ F L++
Sbjct: 184 LFNVHNAYVPSVSYLLMAVVMIIIYGYIVVKKIFPKFAKE-----KVIFSR----KLIRN 234
Query: 217 SYPFWLIGLFTLIYYRTDMVM-------LSLMRGDYETGIYR-AAYTLIEVSLFVPNIVV 268
+ + G++ +I Y +++ L+ G YR A + + + V
Sbjct: 235 LFSY---GMYVMIGYAGSLILGYLDGICLTYFTGLNAVADYRNVAMPTVNILSYFAFSVG 291
Query: 269 STTMPSMARLWVED-RKTLNLLFRKSF-QMLLGIGILGVAGYYVLARLGITIVFGEKFLP 326
+ P + LW + +K L+ K F L+ + L + Y + I I+F K+L
Sbjct: 292 AVLFPMSSELWEKGYKKALSYGVEKVFLYSLIIVTPLAILMAYFPTVI-INILFNPKYLS 350
Query: 327 SVPVLRILAFAIPFMFLNSLFGSFMNATGRELTFTKITSFTALLNVVLNYILIRYYGASG 386
+ P ++IL+F F+ NS+ + +N GR TKI A N++ N +LI +G G
Sbjct: 351 AAPAIQILSFGAMFLTFNSIGFNILNGIGRPNISTKILYIGASFNLIFNILLIPKFGIIG 410
Query: 387 AAVATV 392
AA+ TV
Sbjct: 411 AAITTV 416
>pir||H75097 polysaccharide biosynthesis related protein PAB0783 - Pyrococcus
abyssi (strain Orsay) >gi|5458597|emb|CAB50085.1|
(AJ248286) polysaccharide biosynthesis related protein
[Pyrococcus abyssi]
Length = 511
Score = 79.6 bits (193), Expect = 6e-14
Identities = 91/408 (22%), Positives = 175/408 (42%), Gaps = 18/408 (4%)
Query: 7 ARLIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFSDLGVGY 66
AR+ + G +F +IS L + V+++R G ++ + + I + LG
Sbjct: 10 ARIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPT 69
Query: 67 YFMREVARDKGKAKELLPDVLGFKIVLALLNFLVVVTLTLFLPKPGWMKILIILAGAEGM 126
RE+ + K E + ++ ++L ++ +++ LFL ++ E +
Sbjct: 70 SLPREIPVYREKYPEKVNRLIS-TVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPL 128
Query: 127 LTWIAYLFVRIMYAHEVTKYEAIARVIERTWAFFVGGAVLY-AYRSLTPF----ILVILL 181
L + + V+ + RV E+ + + L+ A+ +L I +++
Sbjct: 129 KVISLALPFYALTSMLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIFGKSIKAVVI 188
Query: 182 GYTLREILR---IKWGSQFLN--TVKIRFKPGVWVSLLKESYPFWLIGLFTLIYYRTDMV 236
YTL ++ I W + T+++ F + SLL S P L G+ + TD +
Sbjct: 189 AYTLSWVVTLFLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILGFVMTWTDTL 248
Query: 237 MLSLMRGDYETGIYRAAYTLIEVSLFVPNIVVSTT---MPSMARLWVEDR-KTLNLLFRK 292
M+ E GIY +A L ++ +P + S + MP ++L+ + + K + +++
Sbjct: 249 MIGYYLTSREVGIYNSATPLAKM---LPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQM 305
Query: 293 SFQMLLGIGILGVAGYYVLARLGITIVFGEKFLPSVPVLRILAFAIPFMFLNSLFGSFMN 352
+ + + + + + I+ +FGEK+L + L+ILA F L G +
Sbjct: 306 TTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLTLV 365
Query: 353 ATGRELTFTKITSFTALLNVVLNYILIRYYGASGAAVATVVSQVFLLF 400
G AL N++LN LI +YG +GAA AT VS + F
Sbjct: 366 IIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANF 413
>pir||T50041 capsular polysaccharide synthesis protein 14L [validated] -
Streptococcus pneumoniae >gi|2198545|emb|CAA59772.1|
(X85787) putative repeating unit transporter
[Streptococcus pneumoniae]
Length = 487
Score = 79.2 bits (192), Expect = 8e-14
Identities = 97/416 (23%), Positives = 183/416 (43%), Gaps = 50/416 (12%)
Query: 8 RLIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFSDLGVGYY 67
++ KN + G ++I LSR LG E LG +SF +F LG+ Y
Sbjct: 4 KISKNLAYNIGYQLIGIAFPLITSPYLSRILGAENLGIHSFTISVALYFMMFMLLGIANY 63
Query: 68 FMREVARDKGKAKELLPDVLGFKIVLALLNFLVVVTLTLFLPKPGW---------MKILI 118
R +A K + KE+L + I L V+VT+ + W +++ +
Sbjct: 64 GNRTIATVKREGKEILSKTF-WNIYYVQLLMSVLVTIAYLIYLYFWVSSYKFIAILQLFL 122
Query: 119 ILAGAEGMLTWIAYL---FVRIMYAHEVTKYEAIARVIERTWAFFVGGAVLYAYRSLTPF 175
+L+ A +TW+ Y F +I++ + + K + + ++F + L+ Y +
Sbjct: 123 LLSNAVD-ITWLFYGLEDFKQIVFRNALVKLLGLFLI----FSFVHESSDLWKYTLINGG 177
Query: 176 ILVILLGYTLREILRIKWGSQF--LNTVKIRFKPGVWVSLLKESYPFWLIGLFTLIYYRT 233
V L+G L WG L+ VKI+ K +S +K ++ L I+
Sbjct: 178 --VTLVGQLLL------WGQLKGRLSWVKIQKKD--LLSHIKPILVLFIPVLAISIFSNM 227
Query: 234 DMVMLSLMRGDYETGIYRAAYTLIEVSLFVPNIVVSTTMPSMARLWVEDRKT-------L 286
D ML LM G + G Y A +I++ + + + +P + L E ++ +
Sbjct: 228 DKYMLGLMVGVKQVGFYDNANRIIDIPKALIAALEAVMLPRTSYLLAEGQEEKSNYYIEV 287
Query: 287 NLLFRKSFQMLLGIGILGVAGYYVLARLGITIVFGEKFLPSVPVLRILA----FAIPFMF 342
+L+ +L GI+ V+ + L + +GE+FL S ++ +A F++P
Sbjct: 288 TILYAMMISSVLIFGIISVSDIFSL------VFWGEEFLESGRLIAAMAPVFVFSVPGNI 341
Query: 343 LNSLFGSFMNATGRELTFTKITSFTALLNVVLNYILIRYYGASGAAVATVVSQVFL 398
+ + ++ ++ + AL+N++LN LI+ +GA GA ++TV+++ L
Sbjct: 342 IRT---QYLIPRAKDKDYVLSLIIGALVNILLNCFLIKPFGAMGATISTVLAEFVL 394
>dbj|BAB07430.1| (AP001519) unknown conserved protein in others [Bacillus
halodurans]
Length = 483
Score = 79.2 bits (192), Expect = 8e-14
Identities = 102/416 (24%), Positives = 184/416 (43%), Gaps = 39/416 (9%)
Query: 7 ARLIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLG-IFSDLGVG 65
A ++K +LF + + K + I++ G LG FIF + G + + LG+
Sbjct: 10 AHMLKKFSYLFISNLGLKFNSLIFSFIIAHWQGASFLGAM-FIFLSVHSFGLVLAKLGLF 68
Query: 66 YYF---MREVARDKGKAKELLPDVLGFKIVLALLNFLVVVTLTLFLPKPGWMKILIILAG 122
Y + EV DK K F I +ALL FL+++ L +F P ++ I +
Sbjct: 69 YSLEKKLSEVNIDKNKYISS-----AFAINIALLAFLLLI-LIIFSP---YLDSYIGINN 119
Query: 123 AEGMLTWIAYLFVRIMYAHEVTK----YEAIARV-IERTWAFFVGGAVLYAYRSLTPFIL 177
A L + L I + + + K +E +++ R + F +L Y S +L
Sbjct: 120 ATVALGFSVLLGNFINFGYAIFKSNLQFELFSKLQFFRDFLFRALSIILLFYTSSIEVVL 179
Query: 178 V-------ILLGYTLREILR--IKWGSQFLNTVKIRFKPGVWVSLLKESYPFWLIGLFTL 228
+ ILL YT+ ++ + + W S +K + LL+ + ++ + T+
Sbjct: 180 ISKVMVELILLIYTVIKVSKYNLSWSSPSKAIIK------ELIELLRYNS---VLEIRTV 230
Query: 229 IYYRTDMVMLSLMRGDYETGIYRAAYTLIEVSLFVPNIVVSTTMPSMARLWVEDRKTLNL 288
+ D+ M++ GD+ G+Y+ + + L V ++ T P +R W + K +
Sbjct: 231 TFNYIDIWMINFFLGDFYVGLYQLVWQISTGVLIVGKALIGVTFPYFSR-WSSEGKYDKI 289
Query: 289 LFRKSFQMLLGIGILGVAGYYVLARLG-ITIVFGEKFLPSVPVLRILAFAIPFMFLNSLF 347
F + L + + + L I FGE+F+ + VL IL F F L +
Sbjct: 290 SKYTGFTIKLSLFMPLPTLFLSLTYSNEIMSFFGEEFIRASIVLIILLFGSLFRPLQEIT 349
Query: 348 GSFMNATGRELTFTKITSFTALLNVVLNYILIRYYGASGAAVATVVSQVFLLFLAI 403
+ +TG+ +I+ F+ LLN+ LN+ILI GAA+AT +S + + ++I
Sbjct: 350 SKLLVSTGKAKISYRISVFSGLLNIALNFILILLLHIEGAALATTLSNIIIASISI 405
>gb|AAD19923.1| (AF105116) putative oligosaccharide repeat unit transporter
[Streptococcus pneumoniae]
Length = 481
Score = 78.4 bits (190), Expect = 1e-13
Identities = 91/401 (22%), Positives = 177/401 (43%), Gaps = 51/401 (12%)
Query: 34 LSRTLGPEGLGQYSFIFYYIGLLGI-FSDLGVGYYFMREVAR---DKGKAKELLPDVLGF 89
+SR L P G+G SF F IG GI + LG+ Y ++ VA D+ K +++ +++
Sbjct: 31 ISRILNPNGIGLTSF-FSSIGNYGILLASLGISTYGIKAVASVRDDRDKLSKVVQELMII 89
Query: 90 KIVLALLNFLVVVTLTLFLPKPG-WMKILIILAG----AEGMLTWIAYLFVRIMYAHEVT 144
+ ++++ +++ +T+F+ + +L+I G + L W+ Y +T
Sbjct: 90 NVAMSIITTAILLFMTIFITQLNREFSLLLITCGTILSSPFALNWLYSGMEEYTY---IT 146
Query: 145 KYEAIARVIERTWAFFVGGAVLYAYRSLTPFILVILLGYTLREILRIKWGSQFLN----- 199
+ ++ F ++ F + L IL + F+N
Sbjct: 147 TRSVVFTILSLILIFL----LVKRPEDYIVFASISLFSSLSSNILNLWHSRHFINIKLYK 202
Query: 200 --TVKIRFKPGVWVSLLKESYPFWLIGLFTLIYYRTDMVMLSLMRGDYETGIYRAAYTLI 257
K FKP +W Y F + L IY D VML + G+ G Y A +
Sbjct: 203 NLQFKYHFKP-MW-------YLFASL-LAVNIYTNLDTVMLGFINGNEAVGYYSVASKVK 253
Query: 258 EVSLFVPNIVVSTTMPSMARLWVEDRKTLNL--LFRKSFQMLLGIGILGVAGYYVLARLG 315
+ L + + + +P ++ ++ T N + ++S ++ I I + + V A+
Sbjct: 254 WILLSLITSISAVLLPRLS-FYISKNDTSNFIKMLKESSAVIFFIAIPLMVFFIVEAKDS 312
Query: 316 ITIVFGEKFLPSVPVLRILAFAIPFMFLNSLFGSFMNATG--------RELTFTKITSFT 367
I ++ G ++LP+ ++IL +P + L F N TG RE F +
Sbjct: 313 ILLLGGSQYLPATLAMQIL---MPIL----LISGFSNITGNQILIPMNREKYFMVAVTIG 365
Query: 368 ALLNVVLNYILIRYYGASGAAVATVVSQVFLLFLAITKSKD 408
A++N++LN +L+ +G GA+VAT+ +++ + + + SK+
Sbjct: 366 AVINLILNLLLMPKFGIIGASVATLFAELSQMTVQLHFSKE 406
>gb|AAB66524.1| (AF004325) putative oligosaccharide repeat unit transporter
[Streptococcus pneumoniae]
Length = 481
Score = 78.0 bits (189), Expect = 2e-13
Identities = 93/403 (23%), Positives = 179/403 (44%), Gaps = 55/403 (13%)
Query: 34 LSRTLGPEGLGQYSFIFYYIGLLGIF-SDLGVGYYFMREVAR---DKGKAKELLPDVLGF 89
+SR L P G+G SF F IG GI + LG+ Y ++ VA D+ K +++ +++
Sbjct: 31 ISRILNPNGIGLTSF-FSSIGNYGILLASLGISTYGIKAVASVRDDRDKLSKVVQELMII 89
Query: 90 KIVLALLNFLVVVTLTLFLPKPGW-MKILIILAG----AEGMLTWIAYLFVRIMYAHEVT 144
+ ++++ +++ +T+F+ + +L+I G + L W+ Y +T
Sbjct: 90 NVAMSIITTAILLFMTIFITQLNREFSLLLITCGTILSSPFALNWLYSGMEEYTY---IT 146
Query: 145 KYEAIARVIERTWAFFVGGAVLYAYRSLTPFILVILLGYTLREILRIKWGSQFLNT---- 200
+ +++ F + + F + L IL + F+N
Sbjct: 147 TRSVVFKILSLILIFLL----VKRPEDYIVFASISLFSSLSSNILNLWHSRHFINIKLYK 202
Query: 201 ---VKIRFKPGVWVSLLKESYPFWLIGLFTLIYYRTDMVMLSLMRGDYETGIYRAAYTLI 257
K FKP +W Y F + L IY D VML + G+ G Y A
Sbjct: 203 NLQFKYHFKP-MW-------YLFASL-LAVNIYTNLDTVMLGFINGNEAVGYYSVAS--- 250
Query: 258 EVSLFVPNIVVSTTMPSMARL--WVEDRKTLNLL--FRKSFQMLLGIGILGVAGYYVLAR 313
+V + +++ S + + RL ++ T N + ++S ++ I I + + V A+
Sbjct: 251 KVKWILLSLITSISAVLLLRLSFYISKNDTSNFIKMLKESSAVIFFIAIPLMVFFIVEAK 310
Query: 314 LGITIVFGEKFLPSVPVLRILAFAIPFMFLNSLFGSFMNATG--------RELTFTKITS 365
I ++ G ++LP+ ++IL +P + L F N TG RE F +
Sbjct: 311 DSILLLGGSQYLPATLAMQIL---MPIL----LISGFSNITGNQILIPMNREKYFMVAVT 363
Query: 366 FTALLNVVLNYILIRYYGASGAAVATVVSQVFLLFLAITKSKD 408
A++N++LN +L+ +G GA+VAT+ +++ + + + SK+
Sbjct: 364 IGAVINLILNLLLMPKFGIIGASVATLFAELSQMTVQLHFSKE 406
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.331 0.147 0.438
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142681440
Number of Sequences: 2977
Number of extensions: 5805364
Number of successful extensions: 25328
Number of sequences better than 1.0e-10: 20
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 25290
Number of HSP's gapped (non-prelim): 23
length of query: 411
length of database: 189,106,746
effective HSP length: 52
effective length of query: 359
effective length of database: 157,985,422
effective search space: 56716766498
effective search space used: 56716766498
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 166 (69.1 bits)