BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0782 (PAB0782) DE:Hypothetical protein
(245 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75097 hypothetical protein PAB0782 - Pyrococcus abyssi (st... 466 e-131
pir||E69853 conserved hypothetical protein yjnA - Bacillus subti... 134 1e-30
emb|CAC11726.1| (AL445064) conserved hypothetical membrane prote... 84 2e-15
gb|AAK42433.1| Membrane conserved hypothetical protein [Sulfolob... 83 4e-15
dbj|BAB07173.1| (AP001518) unknown conserved protein [Bacillus h... 81 1e-14
pir||A71165 hypothetical protein PH0518 - Pyrococcus horikoshii ... 80 2e-14
dbj|BAB05177.1| (AP001512) unknown conserved protein [Bacillus h... 80 2e-14
pir||H70015 hypothetical protein yunE - Bacillus subtilis >gi|26... 78 8e-14
pir||F69783 conserved hypothetical protein ydhB - Bacillus subti... 77 2e-13
pir||H69217 hypothetical protein MTH882 - Methanobacterium therm... 76 5e-13
pir||E72774 hypothetical protein APE0183 - Aeropyrum pernix (str... 75 1e-12
gb|AAD10707.1| (AF047001) unknown [Oenococcus oeni temperate bac... 74 1e-12
pir||D71910 hypothetical protein jhp0619 - Helicobacter pylori (... 74 2e-12
pir||E64604 conserved hypothetical integral membrane protein HP0... 73 3e-12
pir||F81376 probable integral membrane protein Cj0343c [imported... 73 3e-12
pir||F71960 hypothetical protein jhp0211 - Helicobacter pylori (... 70 3e-11
pir||C71006 hypothetical protein PH1345 - Pyrococcus horikoshii ... 69 5e-11
dbj|BAB05841.1| (AP001514) unknown conserved protein in others [... 69 6e-11
pir||B64548 conserved hypothetical integral membrane protein HP0... 68 8e-11
pir||A82295 conserved hypothetical protein VC0673 [imported] - V... 68 8e-11
>pir||G75097 hypothetical protein PAB0782 - Pyrococcus abyssi (strain Orsay)
>gi|5458596|emb|CAB50084.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 245
Score = 466 bits (1187), Expect = e-131
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MLTFVLLGFTVGFLVGLTGIGGGALMTPSLIFLGVEPLTAVGTDLLYATITRIFGIVFRY 60
MLTFVLLGFTVGFLVGLTGIGGGALMTPSLIFLGVEPLTAVGTDLLYATITRIFGIVFRY
Sbjct: 1 MLTFVLLGFTVGFLVGLTGIGGGALMTPSLIFLGVEPLTAVGTDLLYATITRIFGIVFRY 60
Query: 61 RKGRIRTDIALKLLAGSVPAILIGGFLIRYFTQVINEYLTIFLGVVLVSSSILGLIKEIK 120
RKGRIRTDIALKLLAGSVPAILIGGFLIRYFTQVINEYLTIFLGVVLVSSSILGLIKEIK
Sbjct: 61 RKGRIRTDIALKLLAGSVPAILIGGFLIRYFTQVINEYLTIFLGVVLVSSSILGLIKEIK 120
Query: 121 LPVKPKVIYVYLLGFIVGFIVQFTSIGAGVIVSFALLNVARVDPRDVIGITLLYGLGLSL 180
LPVKPKVIYVYLLGFIVGFIVQFTSIGAGVIVSFALLNVARVDPRDVIGITLLYGLGLSL
Sbjct: 121 LPVKPKVIYVYLLGFIVGFIVQFTSIGAGVIVSFALLNVARVDPRDVIGITLLYGLGLSL 180
Query: 181 ISSTSYLILGKVNYNILLLLTIGSIPGVYTGTLLSSTTDKEKLKKIMNVLILVIGILILL 240
ISSTSYLILGKVNYNILLLLTIGSIPGVYTGTLLSSTTDKEKLKKIMNVLILVIGILILL
Sbjct: 181 ISSTSYLILGKVNYNILLLLTIGSIPGVYTGTLLSSTTDKEKLKKIMNVLILVIGILILL 240
Query: 241 RRFFQ 245
RRFFQ
Sbjct: 241 RRFFQ 245
>pir||E69853 conserved hypothetical protein yjnA - Bacillus subtilis
>gi|2612912|gb|AAC46336.1| (AF015825) unknown [Bacillus
subtilis] >gi|2633594|emb|CAB13097.1| (Z99110) similar
to hypothetical proteins [Bacillus subtilis]
Length = 254
Score = 134 bits (333), Expect = 1e-30
Identities = 82/252 (32%), Positives = 137/252 (53%), Gaps = 14/252 (5%)
Query: 2 LTFVLLGFTVGFLVGLTGIGGGALMTPSLIFLGVEPLTAVGTDLLYATITRIFGIVFRYR 61
++ +L+G VG LVGLTG+GG AL+TP LI LG+ P AVGTDL+Y +IT++FG+ +R
Sbjct: 3 VSIILMGLFVGALVGLTGVGGAALLTPLLIVLGINPSIAVGTDLVYNSITKLFGVASHWR 62
Query: 62 KGRIRTDIALKLLAGSVPAILIGGFLIRYF-------TQVINEYLTIFLGVVLVSSSI-L 113
+ I + L GS+P+ + ++ F ++I L L +V +S + L
Sbjct: 63 QKTINFKLVKYLAIGSIPSASLAIGILHLFPAFHQHQEEIIKHALGYVLTLVAISIIVRL 122
Query: 114 GLIKEIK------LPVKPKVIYVYLLGFIVGFIVQFTSIGAGVIVSFALLNVARVDPRDV 167
L ++++ +P++ K L+G + GFIV TSIG+G + + A++ + + +
Sbjct: 123 FLDRKLRPNRWQLMPLENKRALTILIGVVFGFIVGLTSIGSGSLFAIAMIYLFNMKASQI 182
Query: 168 IGITLLYGLGLSLISSTSYLILGKVNYNILLLLTIGSIPGVYTGTLLSSTTDKEKLKKIM 227
+G + + L + G V+Y + L +GSIPGV G+ LS L+ IM
Sbjct: 183 VGTDIAHAFLLVTAAGILNASFGSVDYMLAANLLLGSIPGVLIGSHLSPRFSPRPLQFIM 242
Query: 228 NVLILVIGILIL 239
+ILV G+ ++
Sbjct: 243 ASIILVSGLKLI 254
>emb|CAC11726.1| (AL445064) conserved hypothetical membrane protein [Thermoplasma
acidophilum]
Length = 269
Score = 83.9 bits (204), Expect = 2e-15
Identities = 72/259 (27%), Positives = 116/259 (43%), Gaps = 20/259 (7%)
Query: 5 VLLGFTVGFLVGLTGIGGGALMTPSLI-FLGVE-PLTAVGTDLLYATITRIFGIVFRYRK 62
++ G VGF +GL G GG L P LI F+G++ P +GT L I + + RK
Sbjct: 7 IISGIIVGFSLGLIGGGGSILAIPLLIYFVGIKNPHLVIGTTALAVGINALINVYSHLRK 66
Query: 63 GRI--RTDIA------LKLLAGSVPAILIGG----FLIRYFTQVINEYLTIFLGVVLVSS 110
+ RT L +L G+ ++ G FL + VI Y+ I +
Sbjct: 67 KNVSLRTGAIFTVFGILGVLLGTTLGLITPGGKLLFLFSFLMIVIGAYMFITKCKTCKNY 126
Query: 111 SILGLIKEIKLPVKP------KVIYVYLLGFIVGFIVQFTSIGAGVIVSFALLNVARVDP 164
+ P P + I + + G + GF + IG G ++ ALL A +
Sbjct: 127 DAIPKKNNNDDPPDPPKKGLWQKIKLEVFGVLAGFASGYFGIGGGFLIVPALLYSADITM 186
Query: 165 RDVIGITLLYGLGLSLISSTSYLILGKVNYNILLLLTIGSIPGVYTGTLLSSTTDKEKLK 224
+G +L+ L+++ Y I GKV I LL +G I G Y G LSS+ + L+
Sbjct: 187 NLAVGTSLMSVGTFGLVTALRYGIAGKVLVTIALLYVLGGIFGGYAGAKLSSSMKRSTLR 246
Query: 225 KIMNVLILVIGILILLRRF 243
+ +++I+V+GI + + F
Sbjct: 247 RFFSLIIIVVGIYMAIESF 265
>gb|AAK42433.1| Membrane conserved hypothetical protein [Sulfolobus solfataricus]
Length = 293
Score = 82.7 bits (201), Expect = 4e-15
Identities = 64/260 (24%), Positives = 114/260 (43%), Gaps = 25/260 (9%)
Query: 2 LTFVLLGFTVGFLVGLTGIGGGALMTPSLIFL-----GVEPLT---------AVGTDLLY 47
L ++ G VGF +GL G GG L P L++ G+ P + +GT L
Sbjct: 17 LLSIISGILVGFSLGLIGGGGSILAIPLLLYFVGLANGIPPGSPEYTYITHLTLGTTALA 76
Query: 48 ATITRIFGIVFRYRKGRIRTDIALKLLAGSVPAILIGGFLIRYFTQVINEYLTIFLGVVL 107
+ +R+G +R + V +IG +L + + +L FL + +
Sbjct: 77 VGLNSYINSYMHFRRGNVRVPEGIIFTIPGVIGDVIGAYLSHLMSGALILFLFGFLMIAV 136
Query: 108 V-----------SSSILGLIKEIKLPVKPKVIYVYLLGFIVGFIVQFTSIGAGVIVSFAL 156
S + ++ L + KV V GF+VGF + IG G +V L
Sbjct: 137 AIRMWRSKCNPNRSVLYNNSHKLSLRERIKVTKVIPAGFLVGFASGYFGIGGGFLVVPGL 196
Query: 157 LNVARVDPRDVIGITLLYGLGLSLISSTSYLILGKVNYNILLLLTIGSIPGVYTGTLLSS 216
L +D +G +L+ + ++ +Y + G V+ I LL +G + G YTG+ ++S
Sbjct: 197 LFSTGLDMLRAVGTSLIAVGTFGVTAAITYAVYGYVDIVISLLYLLGGVVGGYTGSTIAS 256
Query: 217 TTDKEKLKKIMNVLILVIGI 236
++ L+K+ ++I+V+ I
Sbjct: 257 RMPRQTLRKLFAIIIIVVAI 276
>dbj|BAB07173.1| (AP001518) unknown conserved protein [Bacillus halodurans]
Length = 273
Score = 80.8 bits (196), Expect = 1e-14
Identities = 66/264 (25%), Positives = 117/264 (44%), Gaps = 32/264 (12%)
Query: 5 VLLGFTVGFLVGLTGIGGGALMTPSLIFLG--------VEPLTAVGTDLLYATITRIFGI 56
V +G G + L G+GGG ++ P+L++LG V P AVGT LL T +
Sbjct: 7 VCVGLLAGTIGSLMGLGGGIIVVPALLWLGGTALLSEAVTPQVAVGTSLLIMIFTGLSST 66
Query: 57 VFRYRKGRIRTDIALKLLAGSVPAILIGGFLIRYFTQVINEYLTIFLGVVLVSSSILGLI 116
+KG + L GS P L+G +L QV + I+ G+ ++ S L +I
Sbjct: 67 FAYMKKGTVDYKSGLIFFIGSGPGALVGVWL-NQGLQV--QQFQIYFGLFVILMSFLLMI 123
Query: 117 KEIKLPVKPKV-----IYV----------------YLLGFIVGFIVQFTSIGAGVIVSFA 155
+ P++ K +YV L+ F VG + IG G ++ A
Sbjct: 124 RHRLKPMEIKKKGIRRVYVDPEGQRYDYGFQAWLGILIAFFVGLLSGLFGIGGGTLLVPA 183
Query: 156 LLNVARVDPRDVIGITLLYGLGLSLISSTSYLILGKVNYNILLLLTIGSIPGVYTGTLLS 215
++ + P + ++ + +L+SS S+L LG VN+ L G+ G G +L+
Sbjct: 184 MILLFAFPPHVAVATSMFMIIFTALLSSLSHLALGNVNWLFAAGLVPGAWIGAKLGAILN 243
Query: 216 STTDKEKLKKIMNVLILVIGILIL 239
+ + + + + +L +G+ ++
Sbjct: 244 TRLKSDTIVFVFRLFLLFVGLRLI 267
>pir||A71165 hypothetical protein PH0518 - Pyrococcus horikoshii
>gi|3256923|dbj|BAA29606.1| (AP000002) 252aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 252
Score = 80.4 bits (195), Expect = 2e-14
Identities = 63/246 (25%), Positives = 114/246 (45%), Gaps = 10/246 (4%)
Query: 1 MLTFVLLGFTVGFLVGLTGIGGGALMTPSLIFLGVEPLTAVGTDLLYATITRIFGIVFRY 60
+L ++ G G L + G+GGG L+ P+L LGVE A+GT T + Y
Sbjct: 5 LLKSLITGLITGTLAAMFGLGGGFLLVPTLNILGVEIHHAIGTSSASIIFTALSSSYAYY 64
Query: 61 RKGRIRTDIALKLLAGSVPAILIGGFLIRYFTQVIN-EYLTIFLGVVLVSSSILGLIK-- 117
++ +I DI + L + +V IG ++ + T +I+ L + G+ L+ + + K
Sbjct: 65 KQKKIYYDIGIALASTAV----IGAYIGAWLTSIISPSKLKVIFGITLIFVAYRMIKKKP 120
Query: 118 --EIKLPVKPKVIYVYLLGFIVGFIVQFTSIGAGVIVSFALLNVARVDPRDVIGITLLYG 175
E+K V+ + +V + GF G + +G G I++ L V + + +
Sbjct: 121 AEEVKEKVRERRKWVPIGGFFSGVLSGLLGVGGG-IINVPFLTWLGVPIHNAVATSSFAI 179
Query: 176 LGLSLISSTSYLILGKVNYNILLLLTIGSIPGVYTGTLLSSTTDKEKLKKIMNVLILVIG 235
+ S S+ + +LG V L LL G I G G ++ T LK +++L++
Sbjct: 180 IFTSTSSAIKHYLLGNVELYWLPLLVPGLIVGAQIGARIAKKTKARSLKNGFAIVMLILA 239
Query: 236 ILILLR 241
I ++L+
Sbjct: 240 IRMILK 245
>dbj|BAB05177.1| (AP001512) unknown conserved protein [Bacillus halodurans]
Length = 285
Score = 80.4 bits (195), Expect = 2e-14
Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 10/241 (4%)
Query: 2 LTFVLLGFTVGFLVGLTGIGGGALMTPSLIFLGVEPLTAVGTDLLYATITRIFGIVFRYR 61
L FV LG +G G GIGGG ++TP L+ G P +GT L+ + T + G +R
Sbjct: 4 LFFVFLGSIIGIFSGFFGIGGGIILTPLLLLFGFPPAVVIGTSLMLSLGTSLGGAWAHFR 63
Query: 62 KGRIRTDIALKL----LAGSVPAILIGGFL-IRYFTQVINEYLTIFLGVVLVSSSILGLI 116
I + + G+ A+ + FL R ++ IFL SS ++
Sbjct: 64 MKNIHWSHVFIINSAGIVGTQLAVPLMLFLEERQLAEITISLCYIFLLGFFASSMLIPQT 123
Query: 117 KEIKLPV---KPKVIYVYLLGFIVGFIVQFTSIGAGVIVSFALLNVARVDPRDVIGITLL 173
K + P+ P + +G GFI + G + L+++ R P+ +G +L
Sbjct: 124 K--RKPIIRNLPNKLIAVFIGLGAGFISAMLGVSGGFFLVPMLISLLRFAPKKAVGTSLA 181
Query: 174 YGLGLSLISSTSYLILGKVNYNILLLLTIGSIPGVYTGTLLSSTTDKEKLKKIMNVLILV 233
+ + SY + VN+ + LLL IG++ G G +++ ++ ++ ++ L +V
Sbjct: 182 SVIFIVFAGFISYSVQTPVNFGLGLLLIIGTLIGSPVGAKMTAFYSEKAMRTLLGSLYIV 241
Query: 234 I 234
I
Sbjct: 242 I 242
>pir||H70015 hypothetical protein yunE - Bacillus subtilis
>gi|2635735|emb|CAB15228.1| (Z99120) yunE [Bacillus
subtilis]
Length = 273
Score = 78.4 bits (190), Expect = 8e-14
Identities = 63/269 (23%), Positives = 118/269 (43%), Gaps = 32/269 (11%)
Query: 5 VLLGFTVGFLVGLTGIGGGALMTPSLIFLG--------VEPLTAVGTDLLYATITRIFGI 56
V+LG G + L G+GGG ++ PSL+FL V P A+GT LL T +
Sbjct: 7 VVLGLIAGTVGSLIGLGGGIVIVPSLMFLSTVTQLFQDVTPQVAIGTSLLVIIFTGLSST 66
Query: 57 VFRYRKGRIRTDIALKLLAGSVPAILIGGFLIRYFTQVINEYLTIFLGV--VLVSSSIL- 113
+ + + L GS P +IG ++ + F + +++ G+ +L+S S++
Sbjct: 67 LAYIKYKTVDYKSGLIFFIGSGPGSMIGAYVSKLFN---SNSFSVWFGIFMILISLSLML 123
Query: 114 ------------GLIKEIKLPVKPKVIYVY------LLGFIVGFIVQFTSIGAGVIVSFA 155
G+I+ + Y Y + F+VGF+ IG G ++ A
Sbjct: 124 KAKARPINKAHKGIIRTFQDDAGEPYTYSYQASVGIAIAFVVGFLGGLFGIGGGSLMVPA 183
Query: 156 LLNVARVDPRDVIGITLLYGLGLSLISSTSYLILGKVNYNILLLLTIGSIPGVYTGTLLS 215
++ + P+ + ++ S+ S S++I G VN+ L L G+ G G ++
Sbjct: 184 MMLLFLFPPKVAVATSMFIIFLSSMTGSVSHMISGHVNWLYALALVPGAWFGGKLGAAIN 243
Query: 216 STTDKEKLKKIMNVLILVIGILILLRRFF 244
+ + IM +++++IG ++ F
Sbjct: 244 RKMQTKTIVMIMRIVLILIGCQLIYEGIF 272
>pir||F69783 conserved hypothetical protein ydhB - Bacillus subtilis
>gi|1945085|dbj|BAA19693.1| (D88802) transmembrane
[Bacillus subtilis] >gi|2632882|emb|CAB12388.1| (Z99107)
similar to hypothetical proteins [Bacillus subtilis]
Length = 259
Score = 76.9 bits (186), Expect = 2e-13
Identities = 59/231 (25%), Positives = 104/231 (44%), Gaps = 10/231 (4%)
Query: 2 LTFVLLGFTVGFLVGLTGIGGGALMTPSLIFLGVEPL-TAVGTDLLYATITRIFGIVFRY 60
+ +L+ F +G ++G G GG + L L P+ TA+GT L T + G Y
Sbjct: 1 MLIILVMFLLGIILGFIGAGGAGFVIALLTLLFHIPIHTALGTSLAGMAFTSLSGAYSHY 60
Query: 61 RKGRIRTDIALKLLAGSVPAILIGGFLIRYFTQVINEYLT---IFLGVVLVSSSILGLIK 117
R+G I+ I L + + G L + + YLT +FL +L+ + ++K
Sbjct: 61 REGNIQMKIGLIVGGFAAVGSFFGAKLTSFIPADLLHYLTAGMLFLSAILILIRLF-ILK 119
Query: 118 EIKLPVKPKVIYVY----LLGFIVGFIVQFTSIGAGVIVSFALLNVARVDPRDVIGITLL 173
E K V + Y +LG G + IG+ + L+ + + R +G T+L
Sbjct: 120 E-KAQVNQSTLSTYTRAVILGIAAGVLSGTFGIGSAPFIQIGLMIMLNLSIRHSVGTTML 178
Query: 174 YGLGLSLISSTSYLILGKVNYNILLLLTIGSIPGVYTGTLLSSTTDKEKLK 224
+ L++ Y+ G V+Y +L+ + +G++ G Y G ++ K LK
Sbjct: 179 VIIPLAVGGGIGYITEGFVDYVLLVKVLVGTMCGAYVGAKFTNLMPKVVLK 229
>pir||H69217 hypothetical protein MTH882 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621976|gb|AAB85380.1| (AE000864)
conserved protein [Methanobacterium thermoautotrophicum]
Length = 261
Score = 75.7 bits (183), Expect = 5e-13
Identities = 69/253 (27%), Positives = 106/253 (41%), Gaps = 27/253 (10%)
Query: 8 GFTVGFLVGLTGIGGGALMTPSLIFL----GVEP----LTAVGTDLLYATITRIFGIVFR 59
G G GL G+GGG ++ P L FL G P TA GT L T + G
Sbjct: 16 GLLAGLATGLLGVGGGFIIAPVLFFLMEAGGTPPDIAIRTAFGTSLAIILPTALSGAHSH 75
Query: 60 YRKGRIRTDIALKL----LAGSVPAILIGGFLIRYFTQVINEYLTIFLGVVLVSSSILGL 115
YR+ + + I + + GSV + Y L F GV+L+ S L
Sbjct: 76 YRRKCVDSRIGITMGVLGACGSVAGVFTASASPAYV-------LRAFFGVLLILVSAQLL 128
Query: 116 IKEIKLPVKPKVIYVYLLGFIVGFIVQFTSIGAGVIVSFALLNVARVDPRDVIGITLLYG 175
+ P + LGF+ GF+ IG GV++ L+ VA D + +G + L
Sbjct: 129 LSSRISPSGFGRNAAFPLGFLAGFLSGLLGIGGGVVLVPLLVMVAGFDVLEAVGTSSLVI 188
Query: 176 LGLSLISSTSYLI--------LGKVNYNILLLLTIGSIPGVYTGTLLSSTTDKEKLKKIM 227
+ + SY+ +G VN LL+ + S+P G L++ D ++ I
Sbjct: 189 AFTAASGTISYIFTGPGGPFTVGYVNLLQFLLVIVMSVPSSRLGALIAHRVDVRYIRYIF 248
Query: 228 NVLILVIGILILL 240
+L+L G+ +LL
Sbjct: 249 IILLLFTGLKMLL 261
>pir||E72774 hypothetical protein APE0183 - Aeropyrum pernix (strain K1)
>gi|5103574|dbj|BAA79095.1| (AP000058) 270aa long
hypothetical protein [Aeropyrum pernix]
Length = 270
Score = 74.5 bits (180), Expect = 1e-12
Identities = 60/253 (23%), Positives = 120/253 (46%), Gaps = 22/253 (8%)
Query: 5 VLLGFTVGFLVGLTGIGGGALMTPSLIFL-GVEPLTAVGTDLLYATITRIFGIVFRYRKG 63
+L+G L L+G+GGG P +F+ G+ P AVG+ + I I + R+G
Sbjct: 21 ILMGVAAAALASLSGVGGGVFFVPIFLFIVGLPPNIAVGSSKVVVAIVSIVSGLTYLRQG 80
Query: 64 RIRTDIALKLLAGSVPAILIGGFLIRYFTQ-----VINEYLTIFLGVVLVSSSILGLIKE 118
R A L+ +P +G +L+ Y ++ ++T + +L+ ++ L +E
Sbjct: 81 TTRLSRAAPLMVSMIPGAALGAYLVAYIDPRLLEVILGLFITYYSLRLLLVTARKALARE 140
Query: 119 IKLPV--------KPKVIYVYL-LGFIVGFIVQFTSIGAGVIV--SFALLNVARVDPRDV 167
K PV +P Y+ L G G T G G I+ LL +A++ ++
Sbjct: 141 AK-PVEEEGSRGPRPGGRYLMLATGVAAGLFAGLTGTGGGAILVPMLTLLRIAKL--KEA 197
Query: 168 IGITLL-YGLGLSLISSTSYLILGKVNYNILLLLTIGSIPGVYTGTLLSSTTDKEKLKKI 226
+ I++L LG +++S+ ++ G V++ +G++ G G + +S + L+ I
Sbjct: 198 VAISMLSISLG-AVVSAAIHVWTGVVDFGGAAPFALGALIGSILGPMAASRLSTDALRPI 256
Query: 227 MNVLILVIGILIL 239
+ +++L++ + +L
Sbjct: 257 VALVLLLVALRLL 269
>gb|AAD10707.1| (AF047001) unknown [Oenococcus oeni temperate bacteriophage fOg44]
Length = 252
Score = 74.1 bits (179), Expect = 1e-12
Identities = 60/252 (23%), Positives = 119/252 (46%), Gaps = 18/252 (7%)
Query: 5 VLLGFTVGFLVGLTGIGGGALMTPSLI-FLGVEPLTAVGTDLLYATITRIFGIVFRYRKG 63
+++G VG V L G GG A+ L +G+ TA T L+ + I G+ YR+G
Sbjct: 7 IVIGLIVGTFVILFGGGGAAIYLGILTGVVGLNASTAASTSLVTVLPSLILGVWTYYRQG 66
Query: 64 RIRTDIALKLLAGSVPAILIGGFLIRYFTQVINEYLTIFLGVVLVSSSILGLIKEIKLPV 123
I+T + ++L ++PA++IG + Y + +++ +G++L+ I L ++ K V
Sbjct: 67 TIKTRLGNQMLITAIPAVIIGSLISSYIPDNLYKWI---VGIILILLGINMLFQKQKSQV 123
Query: 124 KPKV---------IYVYLLGFIVGFIVQFTSI--GAGVIVSFALLNVARVDPRDVIGITL 172
P + + G I G +V + GA +I L+ ++ V+ L
Sbjct: 124 DPVMSKQINRKGRFKAGICGIIGGLMVGVAGMSGGAPIIAGLFLIGLSTVNAVATSAYVL 183
Query: 173 LYGLGLSLISSTSYLILGKVNYNILLLLTIGSIPGVYTGTLLSSTTDKEKLKKIMNVLIL 232
++ +S I + +++ +V++N + L +G++ G G L + K K+ K + +I
Sbjct: 184 VF---MSAIGTVFHIVGSQVDWNAGISLMVGALIGAAIGPRLLTRLTKSKVGKYIKPVIA 240
Query: 233 VIGILILLRRFF 244
+L+ + F
Sbjct: 241 FFLVLLGFKTLF 252
>pir||D71910 hypothetical protein jhp0619 - Helicobacter pylori (strain J99)
>gi|4155164|gb|AAD06192.1| (AE001493) putative
[Helicobacter pylori J99]
Length = 255
Score = 73.7 bits (178), Expect = 2e-12
Identities = 55/251 (21%), Positives = 116/251 (45%), Gaps = 13/251 (5%)
Query: 4 FVLLGFTVGFLVGLTGIGGGALMTPSLIFLGVEPLTAVGTDLLYATITRIFGIVFRYRKG 63
++ +G G L G+ GIGGG ++ P ++ G ++G +L ++ G V ++K
Sbjct: 7 YIAIGLFTGILSGIFGIGGGMIIVPIMLATGHSFEESIGISILQMVLSSFVGSVLNFKKK 66
Query: 64 RIRTDIALKLLAGSVPAILIGGFLIRYFTQVINEYLTIFLGVVLVSSSILGLIKEIKLPV 123
+ + L + AG + GF+++ V ++ L + +++V S I ++K K +
Sbjct: 67 SLDFSLGLLIGAGGLIGASFSGFILKI---VSSKILMVIFALLVVYSMIQFVLKPKKKDL 123
Query: 124 KPKV-------IYVYLLGFIVGFIVQFTSIGAGVIVSFALLNVARVDPRDVIGITLLYGL 176
+ ++L+G + GF IG G+++ + D + + + L + L
Sbjct: 124 ITDTKRYHLQGLKLFLIGALTGFFAITLGIGGGMLMVPLMHYFLGYDSKKCVALGLFFIL 183
Query: 177 GLSLISSTSYLILGKVNYNILL---LLTIGSIPGVYTGTLLSSTTDKEKLKKIMNVLILV 233
S+ + S + +N +LL ++ +GS+ GV G EK+ K + + +
Sbjct: 184 FSSISGAFSLMYHHIINKEVLLAGAIVGLGSVMGVSIGIKWIMGLLNEKMHKALILGVYG 243
Query: 234 IGILILLRRFF 244
+ +LI+L + F
Sbjct: 244 LSLLIVLYKIF 254
>pir||E64604 conserved hypothetical integral membrane protein HP0677 -
Helicobacter pylori (strain 26695)
>gi|2313804|gb|AAD14882.1| (AE000581) conserved
hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 255
Score = 73.4 bits (177), Expect = 3e-12
Identities = 55/251 (21%), Positives = 116/251 (45%), Gaps = 13/251 (5%)
Query: 4 FVLLGFTVGFLVGLTGIGGGALMTPSLIFLGVEPLTAVGTDLLYATITRIFGIVFRYRKG 63
++ +G G L G+ GIGGG ++ P ++ G ++G +L ++ G V ++K
Sbjct: 7 YIAIGLFTGILSGIFGIGGGLIIVPIMLATGHSFEESIGISILQMALSSFVGSVLNFKKK 66
Query: 64 RIRTDIALKLLAGSVPAILIGGFLIRYFTQVINEYLTIFLGVVLVSSSILGLIKEIKLPV 123
+ + L + AG + GF+++ V ++ L + +++V S I ++K K +
Sbjct: 67 SLDFSLGLLIGAGGLIGASFSGFVLKI---VSSKILMVIFALLVVYSMIQFVLKPKKKDL 123
Query: 124 KPKV-------IYVYLLGFIVGFIVQFTSIGAGVIVSFALLNVARVDPRDVIGITLLYGL 176
+ ++L+G + GF IG G+++ + D + + + L + L
Sbjct: 124 IADTKRYHLQGLKLFLIGTLTGFFAITLGIGGGMLMVPLMHYFLGYDSKKCVALGLFFIL 183
Query: 177 GLSLISSTSYLILGKVNYNILL---LLTIGSIPGVYTGTLLSSTTDKEKLKKIMNVLILV 233
S+ + S + +N +LL ++ +GS+ GV G EK+ K + + +
Sbjct: 184 FSSISGAFSLMYHHIINKEVLLAGAIVGLGSVMGVSIGIKWIMGLLNEKMHKALILGVYG 243
Query: 234 IGILILLRRFF 244
+ +LI+L + F
Sbjct: 244 LSLLIVLYKLF 254
>pir||F81376 probable integral membrane protein Cj0343c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6967818|emb|CAB74180.1| (AL139075) putative integral
membrane protein [Campylobacter jejuni]
Length = 261
Score = 73.4 bits (177), Expect = 3e-12
Identities = 52/244 (21%), Positives = 107/244 (43%), Gaps = 9/244 (3%)
Query: 2 LTFVLLGFTVGFLVGLTGIGGGALMTPSLIFLGVEPLTAVGTDLLYATITRIFGIVFRYR 61
L ++++G G GL GIGGG ++ PS+ LG A+G +L +FG Y+
Sbjct: 6 LPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHAIGISVLQMIFAAVFGSYINYK 65
Query: 62 KGRIRTDIALKLLAGSVPAILIGGFLIRYFTQVINEYLTIFLGVVLVSSSILGLIKEI-- 119
K + + + G + G L++ + V + + + + G+ + I
Sbjct: 66 KKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTSVFLAVSCIFFIKYAFGIKENIVQ 125
Query: 120 -KLPVKPKVIYVYLLGFIVGFIVQFTSIGAGVIVSFALLNVARVDPRDVIGITLLYGLGL 178
+ V K + +++ G G IG G++++ L D + V+ ++L + +
Sbjct: 126 NQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIAPILAYFLGYDSKKVVSLSLFFVIFA 185
Query: 179 SLISSTSYLILGKVNYNIL---LLLTIGSIPGVYTGTLLSSTTDKEKLKKIMNVLILVIG 235
S+ S+ G ++ ++ +L+ I S+ GV+ G + +K + +L+ V
Sbjct: 186 SVSGIISFSNSGVIDSEVIHKGILVGIASMVGVFIGIKI---IEKMHISAHRKILLCVYA 242
Query: 236 ILIL 239
+ IL
Sbjct: 243 LSIL 246
>pir||F71960 hypothetical protein jhp0211 - Helicobacter pylori (strain J99)
>gi|4154732|gb|AAD05794.1| (AE001459) putative
[Helicobacter pylori J99]
Length = 277
Score = 69.9 bits (168), Expect = 3e-11
Identities = 68/270 (25%), Positives = 116/270 (42%), Gaps = 40/270 (14%)
Query: 6 LLGFTVGFLVGLTGIGGGALMTPSLIFLGVEPLTAVGTDLLYATITRIFGIVFRYRKGRI 65
L+G G G GIGGG ++ PS IF AVG L+ + + G + Y+KG
Sbjct: 11 LVGLFTGITAGFFGIGGGEIVVPSAIFAHFSYSHAVGISLMQMLFSSVVGSIINYKKG-- 68
Query: 66 RTDIALKLLAGSVPAI--LIGGFLIRYFTQVINEYLTIFLGVVLVSSSIL---------- 113
L L GS A+ L+G L + +VIN+ + + + VV+V + +
Sbjct: 69 ----LLDLKEGSFAALGGLMGAILGSFILKVINDKILMSVFVVVVCYTFIKYAFSSNKKP 124
Query: 114 --------GLIKEIKLPVKPKVI----------YVYLLGFIVGFIVQFTSIGAGVIVSFA 155
L K P K + I + L GF+ G +G G+++
Sbjct: 125 EHFEEMHFDLHANNKTPEKKRAIPFVSMDRTHGVLMLAGFVTGIFSIPLGMGGGILMVPF 184
Query: 156 LLNVARVDPRDVIGITLLYGLGLSL---ISSTSYLILGKVNYNILLLLTIGSIPGVYTGT 212
L + D + ++ + L + + SL IS + +L ++ ++ +G+ GV G
Sbjct: 185 LGYFLKYDSKKIVPLGLFFVVFASLSGVISLYNGKVLDDISVQAGVITGVGAFLGVGIGI 244
Query: 213 LLSSTTDKEKLKKIMNVLILVIGILILLRR 242
L + + EK+ KI+ +LI + IL L +
Sbjct: 245 KLIALAN-EKVHKILLLLIYALSILATLHK 273
>pir||C71006 hypothetical protein PH1345 - Pyrococcus horikoshii
>gi|3257768|dbj|BAA30451.1| (AP000006) 242aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 242
Score = 69.1 bits (166), Expect = 5e-11
Identities = 52/236 (22%), Positives = 112/236 (47%), Gaps = 5/236 (2%)
Query: 6 LLGFTVGFLVGLTGIGGGALMTPSLIFLGVEPLTAVGTDLLYATITRIFGIVFRYRKGRI 65
L+ F + + + G+G + P + +LGV +TA T L T++ + V + G++
Sbjct: 8 LISFILSVIFSIGGVGSAIAIVPVMAWLGVPLMTAKPTGLFINTLSMLSATVKNLKHGKL 67
Query: 66 RTDIALKLLAGSVPAILIGGFLIRYFTQVINEYLTIFLGVVLVSSSILGLIKEIKLPVKP 125
+ L +L + +G + ++ + IF+ ++ S ++L K K
Sbjct: 68 ELKLGLPILLVATMVAPLGAYTGKFIPR--RYIFLIFMAFLVYSGTMLLFFKPRKRAENG 125
Query: 126 K-VIYVYLLGFIVGFIVQFTSIGAGVIVSFALLNVARVDPRDVIGITLLYGLGLSLISST 184
++ ++G I GF+ +G G I+S AL+ + +P+ V T L SL
Sbjct: 126 NHLVEGSVIGGIAGFLGGLLGVGGGGIISPALIMLG-YEPKKVAATTALVVFFSSLSGFL 184
Query: 185 SYLILGKVNYNILLLLTIGSIPGVYTGT-LLSSTTDKEKLKKIMNVLILVIGILIL 239
+Y +G ++ +L ++I ++ G + GT L+ E++KK + +++ ++ + +L
Sbjct: 185 TYWGMGTLDLRLLAWVSISALAGGWIGTHLMHFKMSSEQVKKAIGMILYLMVVKML 240
>dbj|BAB05841.1| (AP001514) unknown conserved protein in others [Bacillus
halodurans]
Length = 259
Score = 68.7 bits (165), Expect = 6e-11
Identities = 66/249 (26%), Positives = 115/249 (45%), Gaps = 21/249 (8%)
Query: 1 MLTFVLL-GFTVGFLVGLTGIGGGALMTPSLIFLGVEPLTAVGTDLLYATITRIFGIVFR 59
+L F+L GF F+ + G GGG + P+L+F G+ P A+GT+ L ATI + +
Sbjct: 8 VLIFLLASGFVAAFIDSVVG-GGGLISIPALLFAGLPPSVALGTNKLAATIGALTSTINF 66
Query: 60 YRKGRIRTDIALKLLAGSVPAILIGGFLIRY----FTQVINEYLTIFLGVVLVSSSILGL 115
+ G I + LL S+ +G ++++ F + I +L I + + V G+
Sbjct: 67 LQSGHINKKLVFTLLPLSIVGSALGVYIVQLIPSEFLRPIILFLLILVTIYTVFKKNWGM 126
Query: 116 IKEIK-LPVKP---KVIYVYLLGFIVGFIVQFTSIGAGVIVSFALLNVARVDPRDVIGIT 171
+K LP K + V +LGF GF+ T G+ +I F LL V+ G
Sbjct: 127 ESNVKHLPGKMIGFVIFAVLMLGFYDGFLGAGT--GSFLIFLFLLLGFNFVES---AGNA 181
Query: 172 LLYGLGLSLISSTSYLILGKVNYNILLLLTIGSIPGVYTGTLLSSTTDKEKLKKIMNVLI 231
+ LG + + ++++ V++ + + I I G Y G+ ++ +K +
Sbjct: 182 KVLNLGSNFAALITFMLFQSVHFFYGIAMGIAMIVGAYVGSRVAIKRGAAYVK------V 235
Query: 232 LVIGILILL 240
L IGI + L
Sbjct: 236 LFIGITVTL 244
>pir||B64548 conserved hypothetical integral membrane protein HP0226 -
Helicobacter pylori (strain 26695)
>gi|2313315|gb|AAD07292.1| (AE000542) conserved
hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 277
Score = 68.3 bits (164), Expect = 8e-11
Identities = 67/270 (24%), Positives = 116/270 (42%), Gaps = 40/270 (14%)
Query: 6 LLGFTVGFLVGLTGIGGGALMTPSLIFLGVEPLTAVGTDLLYATITRIFGIVFRYRKGRI 65
L+G G G GIGGG ++ PS IF AVG L+ + + G + Y+KG
Sbjct: 11 LVGLFTGITAGFFGIGGGEIVVPSAIFAHFSYSHAVGISLMQMLFSSVVGSIINYKKG-- 68
Query: 66 RTDIALKLLAGSVPAI--LIGGFLIRYFTQVINEYLTIFLGVVLVSSSIL---------- 113
L L GS A+ L+G L + ++I++ + + + VV+V + +
Sbjct: 69 ----LLDLREGSFAALGGLMGAILGSFILKIIDDKILMAVFVVVVCYTFIKYAFSSNKKP 124
Query: 114 --------GLIKEIKLPVKPKVI----------YVYLLGFIVGFIVQFTSIGAGVIVSFA 155
L K P K + I + L GF+ G +G G+++
Sbjct: 125 KHFEEMHFDLHANNKTPEKKRAIPFVSMDRTHGVLMLAGFVTGIFSIPLGMGGGILMVPF 184
Query: 156 LLNVARVDPRDVIGITLLYGLGLSL---ISSTSYLILGKVNYNILLLLTIGSIPGVYTGT 212
L + D + ++ + L + + SL IS + +L ++ ++ IG+ GV G
Sbjct: 185 LGYFLKYDSKKIVPLGLFFVVFASLSGVISLYNGRVLDNISVQAGVITGIGAFLGVGIGI 244
Query: 213 LLSSTTDKEKLKKIMNVLILVIGILILLRR 242
L + + EK+ KI+ +LI + IL L +
Sbjct: 245 KLIALAN-EKVHKILLLLIYALSILATLHK 273
>pir||A82295 conserved hypothetical protein VC0673 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655111|gb|AAF93838.1|
(AE004153) conserved hypothetical protein [Vibrio
cholerae]
Length = 264
Score = 68.3 bits (164), Expect = 8e-11
Identities = 60/258 (23%), Positives = 116/258 (44%), Gaps = 24/258 (9%)
Query: 5 VLLGFTVGFLVGLTGIGGGALMTPSLIFLGVEPLTAVGTDLL--YATITRIFGIVFRYRK 62
+LLG VG L GL GIGGG L+ P+L+FL P + T+++ A T + I+
Sbjct: 10 LLLGAVVGVLAGLLGIGGGLLVVPALLFL--LPYAGISTEIVMQLALATSLATIILTSGS 67
Query: 63 GRIR----TDIALKLLAGSVPAILIGGFLIRYFTQVI-NEYLTIFLGVVLVSSSI--LGL 115
+ ++ + ++ +P +++GGFL + I ++YL GV+++ S+
Sbjct: 68 SALNHLKLGNVDVFVVKWLMPGVVVGGFLGSVVAEWIPSQYLPKVFGVIVLCLSVQMYRS 127
Query: 116 IKEIKLPVKPKVIYVYLLGFIVGFIVQFTSIGAGVIVSFALLNVARVDPRDVIGITLLYG 175
I+ ++ P L G +G I IG G + S LN ++ + IG + + G
Sbjct: 128 IRALQNHPMPSAWITTLCGTGIGVISSLAGIGGGSL-SVPFLNRHGIEMKKAIGSSSVCG 186
Query: 176 LGLSLISSTSYLI------------LGKVNYNILLLLTIGSIPGVYTGTLLSSTTDKEKL 223
+++ +++ LG V LL + S+ G L++ +L
Sbjct: 187 FAIAISGMIGFILHGYQVENLPQYSLGYVYLPALLAIATTSMLTTRIGAKLATQMPTARL 246
Query: 224 KKIMNVLILVIGILILLR 241
K+ + ++ + + +L +
Sbjct: 247 KRFFAIFLMCVAVTMLFQ 264
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.331 0.152 0.424
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82484500
Number of Sequences: 2977
Number of extensions: 3451866
Number of successful extensions: 13494
Number of sequences better than 1.0e-10: 20
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 13438
Number of HSP's gapped (non-prelim): 34
length of query: 245
length of database: 189,106,746
effective HSP length: 52
effective length of query: 193
effective length of database: 157,985,422
effective search space: 30491186446
effective search space used: 30491186446
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 164 (68.3 bits)