BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0783 (PAB0783) DE:polysaccharide biosynthesis related
protein
(511 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75097 polysaccharide biosynthesis related protein PAB0783 ... 989 0.0
pir||B75099 hypothetical protein PAB2422 - Pyrococcus abyssi (st... 255 1e-66
gb|AAG19075.1| (AE005006) succinoglycan biosynthesis transport p... 130 3e-29
pir||B64433 probable O-antigen transporter homolog - Methanococc... 125 1e-27
pir||A69149 O-antigen transporter related protein - Methanobacte... 124 2e-27
pir||F71152 probable lipopolysaccharide O-side chain biosynthesi... 122 1e-26
gi|11498203 polysaccharide biosynthesis protein, putative [Archa... 118 1e-25
pir||A69144 succinoglycan biosynthesis transport protein - Metha... 117 3e-25
pir||A69063 O-antigen transporter homolog - Methanobacterium the... 115 2e-24
gb|AAC44056.1| (U51197) unknown [Sphingomonas sp. S88] 106 5e-22
emb|CAA07405.1| (AJ006986) repeating unit transporter [Streptoco... 102 1e-20
emb|CAC11841.1| (AL445065) repeating unit transporter related pr... 102 1e-20
emb|CAB59295.1| (AJ131984) putative repeating unit transporter [... 101 2e-20
sp|P39855|CAPF_STAAU CAPF PROTEIN >gi|506702|gb|AAA64645.1| (U10... 96 1e-18
pir||D69727 biosynthesis of teichuronic acid tuaB - Bacillus sub... 95 2e-18
dbj|BAB07430.1| (AP001519) unknown conserved protein in others [... 92 1e-17
gb|AAD52177.1|AF144879_16 (AF144879) unknown [Leptospira interro... 90 4e-17
gb|AAD19923.1| (AF105116) putative oligosaccharide repeat unit t... 89 1e-16
pir||G69992 spore cortex protein homolog ytgP - Bacillus subtili... 89 2e-16
sp|P37781|RFBE_SHIFL PUTATIVE O-ANTIGEN TRANSPORTER >gi|1084131|... 88 3e-16
dbj|BAB04952.1| (AP001511) involved in spore cortex synthesis [B... 88 3e-16
emb|CAB43612.1| (AJ239004) oligosaccharide repeat unit transport... 86 8e-16
gb|AAD12960.1| (AF078135) unknown [Leptospira borgpetersenii] 85 1e-15
gb|AAB66524.1| (AF004325) putative oligosaccharide repeat unit t... 84 3e-15
emb|CAB91648.1| (AJ249463) hypothetical membrane protein [Bacill... 84 3e-15
sp|Q00758|SP5B_BACSU STAGE V SPORULATION PROTEIN B >gi|2127231|p... 83 9e-15
pir||D72354 lipopolysaccharide biosynthesis protein - Thermotoga... 83 9e-15
gb|AAG18688.1| (AE004973) Vng0050c [Halobacterium sp. NRC-1] 82 2e-14
gb|AAC38752.1| (AF030373) repeat unit transporter [Streptococcus... 80 6e-14
gb|AAC69533.1| (AF057294) Cps23fJ [Streptococcus pneumoniae] 80 8e-14
pir||D75095 probable polysaccharide biosynthesis protein PAB0766... 80 8e-14
dbj|BAB06996.1| (AP001518) spore cortex protein [Bacillus halodu... 79 1e-13
gb|AAC60766.1| (U46859) Wzx [Yersinia enterocolitica (type 0:8)] 78 2e-13
pir||F82566 GumJ protein XF2362 [imported] - Xylella fastidiosa ... 77 5e-13
gb|AAD10179.1| (AF026471) Cps2J [Streptococcus pneumoniae] 76 9e-13
sp|P77377|WZXC_ECOLI LIPOPOLYSACCHARIDE BIOSYNTHESIS PROTEIN WZX... 71 2e-11
pir||T44650 capsular polysaccharide repeat unit transporter cpsM... 71 2e-11
gb|AAG24819.1| (AF285085) flippase [Salmonella typhimurium] 71 3e-11
>pir||H75097 polysaccharide biosynthesis related protein PAB0783 - Pyrococcus
abyssi (strain Orsay) >gi|5458597|emb|CAB50085.1|
(AJ248286) polysaccharide biosynthesis related protein
[Pyrococcus abyssi]
Length = 511
Score = 989 bits (2530), Expect = 0.0
Identities = 511/511 (100%), Positives = 511/511 (100%)
Query: 1 MSSEVTQALARIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISF 60
MSSEVTQALARIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISF
Sbjct: 1 MSSEVTQALARIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISF 60
Query: 61 IVATLGFPTSLPREIPVYREKYPEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFK 120
IVATLGFPTSLPREIPVYREKYPEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFK
Sbjct: 61 IVATLGFPTSLPREIPVYREKYPEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFK 120
Query: 121 EPKLVEPLKVISLALPFYALTSMLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIFG 180
EPKLVEPLKVISLALPFYALTSMLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIFG
Sbjct: 121 EPKLVEPLKVISLALPFYALTSMLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIFG 180
Query: 181 KSIKAVVIAYTLSWVVTLFLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILGF 240
KSIKAVVIAYTLSWVVTLFLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILGF
Sbjct: 181 KSIKAVVIAYTLSWVVTLFLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILGF 240
Query: 241 VMTWTDTLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMG 300
VMTWTDTLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMG
Sbjct: 241 VMTWTDTLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMG 300
Query: 301 RVYQMTTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLN 360
RVYQMTTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLN
Sbjct: 301 RVYQMTTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLN 360
Query: 361 GLTLVIIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFWLY 420
GLTLVIIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFWLY
Sbjct: 361 GLTLVIIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFWLY 420
Query: 421 RKTGIHPFTKNYLKPLGIGVLLVGMIKAVHLNVGNIWYALILLGLILVVYSLLVLVVKSL 480
RKTGIHPFTKNYLKPLGIGVLLVGMIKAVHLNVGNIWYALILLGLILVVYSLLVLVVKSL
Sbjct: 421 RKTGIHPFTKNYLKPLGIGVLLVGMIKAVHLNVGNIWYALILLGLILVVYSLLVLVVKSL 480
Query: 481 DREDLELMLEIEKKLGLNLGILKNFLKRFAQ 511
DREDLELMLEIEKKLGLNLGILKNFLKRFAQ
Sbjct: 481 DREDLELMLEIEKKLGLNLGILKNFLKRFAQ 511
>pir||B75099 hypothetical protein PAB2422 - Pyrococcus abyssi (strain Orsay)
>gi|5458607|emb|CAB50095.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 257
Score = 255 bits (644), Expect = 1e-66
Identities = 120/252 (47%), Positives = 177/252 (69%)
Query: 48 VFNLALTILTISFIVATLGFPTSLPREIPVYREKYPEKVNRLISTVILVVVATSIILMAF 107
+FNLALT+L+I+ ++ATLGF +LPRE+ YRE+ P +V LIST +++V S+I A
Sbjct: 1 MFNLALTVLSIALVIATLGFQNALPREVAFYREREPSRVRDLISTALVIVAVNSLIWTAI 60
Query: 108 LFLGSQAIAEVFKEPKLVEPLKVISLALPFYALTSMLVSISQGFGRVREKVYFTNITYPT 167
LFL + I++VFK+ +L L+++ ALPF+ALT++++SIS+GFGRVRE+VYF NI YPT
Sbjct: 61 LFLEAGNISQVFKDARLAHALRIVVFALPFWALTAVIISISRGFGRVREQVYFQNIVYPT 120
Query: 168 LFLAFATLGVIFGKSIKAVVIAYTLSWVVTLFLIVWDYSRVKIFTLELTFDLNIAKSLLT 227
+F+ F +G V AY + V+TL ++ + R+K+F ++ +L + LL
Sbjct: 121 VFMLFVVVGAFLKLPSAFVFGAYVATQVLTLLVLAFSAWRIKLFEFRVSLNLRLGSKLLK 180
Query: 228 FSLPLLLSGILGFVMTWTDTLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPIS 287
S+PL+L GI GFVM WTDTLM+GYY TS VG+YN+ATP+ ++LP+FL S +Y ++
Sbjct: 181 LSVPLMLEGIAGFVMRWTDTLMLGYYRTSEVVGLYNAATPIVRVLPLFLNSVGIIYPSLA 240
Query: 288 SQLYAQGKVKEM 299
+ LYAQGK E+
Sbjct: 241 AILYAQGKTTEL 252
>gb|AAG19075.1| (AE005006) succinoglycan biosynthesis transport protein; Sgb
[Halobacterium sp. NRC-1]
Length = 518
Score = 130 bits (324), Expect = 3e-29
Identities = 113/486 (23%), Positives = 203/486 (41%), Gaps = 8/486 (1%)
Query: 1 MSSEVTQALARIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISF 60
+S AL I+ G + G L + +AR YGV+ LA I +
Sbjct: 17 VSEAERDALVTISHGAVVTSGGVSAQRALVAVVEFALARGLGPVAYGVYALAWRIAQLLS 76
Query: 61 IVATLGFPTSLPREIPVYREKYPEKVNRLISTVILVVVATSIILMAFLFLGSQAI-AEVF 119
+ T G +L R +P + +V L + +++ A ++L + + A
Sbjct: 77 RLVTFGSVPTLQRYLPAADARRRSRVTGL---AYVTTAGVGLLITAGVWLAAPRLNAATV 133
Query: 120 KEPKLVEPLKVISLALPFYALTSMLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIF 179
P ++++ + + L + + + G R +V F + P + L A +
Sbjct: 134 DHPSFPAAMRLLGVVVVLVGLVMVYAATFRADGSARGEVLFNKLLRPAVRLVGALTALAL 193
Query: 180 GKSIKAVVIAYTLSWVVTLFLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILG 239
G S+ V AY S +V + L +RV T L A+ + P+ +S
Sbjct: 194 GYSVVGVAGAYAASMLVLVVLGFPLTARVTGVTPTLRGLRRDARRFYDHAAPVAMSSFGK 253
Query: 240 FVMTWTDTLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEM 299
D L++G LT+ G+YN L + I L SF+ L P++S+L+A G + +
Sbjct: 254 VFQNRADILLVGALLTAVAAGVYNVVLVLVSIAWIPLLSFNQLLPPVASRLHAAGDIDTL 313
Query: 300 GRVYQMTTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGL 359
VY T+ +P+ + ++F + ++ +FG Y L + G + +G
Sbjct: 314 NAVYSSVTRLIVTTVVPILAVELVFGRDLLA-LFGPTYTRGYGPLAVYLAGVFVGSAVGA 372
Query: 360 NGLTLVIIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFWL 419
G L++ M D + A+ N+ L + + + GAA TS++ V N + L
Sbjct: 373 TGWLLMMTDHQYARMALDWLLAVLNVALTYVFVVEFKLVGAALGTSLAIAVQNALQVLLL 432
Query: 420 YRKTGIHPFTKNYLKPLGIGVLLVGMIKAVHLNVGNIWYAL---ILLGLILVVYSLLVLV 476
R G+ PF +L+PL G ++ + V + + A+ +L+GL + +L VL
Sbjct: 433 RRFEGLWPFDATFLRPLAAGAVMAAAMLGVRSLLVDSSLAIAAGVLVGLPSYLGALSVLG 492
Query: 477 VKSLDR 482
V DR
Sbjct: 493 VDPRDR 498
>pir||B64433 probable O-antigen transporter homolog - Methanococcus jannaschii
>gi|1591720|gb|AAB99070.1| (U67549) polysaccharide
biosynthesis protein (capF) isolog [Methanococcus
jannaschii]
Length = 507
Score = 125 bits (310), Expect = 1e-27
Identities = 120/498 (24%), Positives = 232/498 (46%), Gaps = 44/498 (8%)
Query: 24 LISTFLG----FITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSLPREIPVYR 79
L+S FL ++ RVL A + D G+F L ++ + G +L R IP Y
Sbjct: 15 LLSYFLAAPIAYLVRVLYANEIPKLDVGLFYAVLDFFSMLVVFRAFGLDQALIRYIPKYL 74
Query: 80 EKYPEKVNRLISTVILVVVATSII--LMAFLF-LGSQAIAEVFKEPK--------LVEPL 128
+ +++ L S+++ V + +I+ ++AFL + + IAE + + LV +
Sbjct: 75 AE--NRLDMLKSSIVFVGILQTILAFIVAFLVVIFAPYIAEFYINNQGQFTGRLDLVINI 132
Query: 129 KVISLALPFYALTSMLVSISQ---GFGRVREKVYFTNITYPTLFLAFATLGVIFGKSIKA 185
+I +A+ +Y L S++ S GF +++ T + F+ + + A
Sbjct: 133 LII-MAMGYYFLDSIVAFFSNILTGF-QLQNYASSTRVVRILSVFIFSLIFIYLFNVHNA 190
Query: 186 VVIAYTLSWVVTLFLIVWDYSRVK-IFTL----ELTFDLNIAKSLLTFSLPLLLSGILGF 240
V + + + + +I++ Y VK IF ++ F + ++L ++ + +++
Sbjct: 191 YVPSVSYLLMAVVMIIIYGYIVVKKIFPKFAKEKVIFSRKLIRNLFSYGMYVMIGYAGSL 250
Query: 241 VMTWTDTLMIGYYLTSREVGIY-NSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEM 299
++ + D + + Y+ V Y N A P +L F S + P+SS+L+ +G K +
Sbjct: 251 ILGYLDGICLTYFTGLNAVADYRNVAMPTVNILSYFAFSVGAVLFPMSSELWEKGYKKAL 310
Query: 300 GRVYQMTTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGL 359
+ ++ ++ P+ +++ FP I+ +F KYL A+ A+QIL+ G MF TF +
Sbjct: 311 SYGVEKVFLYSLIIVTPLAILMAYFPTVIINILFNPKYLSAAPAIQILSFGAMFLTFNSI 370
Query: 360 NGLTLVIIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFWL 419
L IG ++ I A N++ NI LIP +G+ GAA T Y + F+ W
Sbjct: 371 GFNILNGIGRPNISTKILYIGASFNLIFNILLIPKFGIIGAAITTVFGYFIMWIFQ-IWF 429
Query: 420 YRKTGIHPF-TKNYLKPLGIGV---LLVGMIKAVHLNV-------GNIWYALILLGL--- 465
K H F K ++ + +G+ + V IK + NV G +++ + +LG+
Sbjct: 430 LNKLLEHQFLNKKWILVILVGIFSLIPVMFIKDLIDNVILQLFVCGVVYFGIYILGIFGL 489
Query: 466 -ILVVYSLLVLVVKSLDR 482
I+ +Y + ++ K + R
Sbjct: 490 KIINIYEVKDIISKIIKR 507
>pir||A69149 O-antigen transporter related protein - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621440|gb|AAB84885.1| (AE000823) O-antigen
transporter related protein [Methanobacterium
thermoautotrophicum]
Length = 475
Score = 124 bits (309), Expect = 2e-27
Identities = 118/497 (23%), Positives = 225/497 (44%), Gaps = 53/497 (10%)
Query: 12 IARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSL 71
+AR T + TL + F+ V +AR+ + +G+ + AL + I I+A LG T +
Sbjct: 10 LARNTAFLLVATLFTNLAAFVWNVYLARYLGTAGFGILSTALALTGIFSILADLGIGTYI 69
Query: 72 PREIPVYREKYPEKV-----NRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVE 126
REI E V NR+I + I V V + + L+ G+ A VF
Sbjct: 70 TREIARNPGGARELVAAGLGNRIILSCI-VFVLILLFPLTGLYSGTAAAVIVF------- 121
Query: 127 PLKVISLALPFYALTSMLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIF-GKSIKA 185
I+ + + +S SI QGF R+ + + + +LF+ + V++ G S+
Sbjct: 122 ----IAGYMLLTSFSSFFNSIFQGFQRMEYQTVWNILN--SLFILVGVIAVVWLGGSVVH 175
Query: 186 VVIAYTLSWVVTLFLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILGFVMTWT 245
V +AY ++ ++L ++R + FT L+F ++ ++ ++P ++ + + W
Sbjct: 176 VAVAYLIAAALSLVYSATTFTR-RFFTPGLSF----SRDMIREAIPFGITSVFSLIYFWI 230
Query: 246 DTLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQM 305
D++M+ VG+YN+ L ++ + P+ S+ + + + + Y
Sbjct: 231 DSVMLSLMKGDVSVGLYNAPYRLLTVITSLYGVYLTAVFPVMSRFHVESE-DSLRFTYMR 289
Query: 306 TTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLTLV 365
+ K+ ++ +P+ + I IF KYL++ AL++L I F+ +NG++
Sbjct: 290 SLKYLIIIAVPLIFTVFTLAGPLIELIFSAKYLESVPALRVLIIA---TAFMFINGVSSS 346
Query: 366 IIGESKLNMIGDLI---AALSNILLNIALIPFYGVNGAAFATSVSYIVAN--FFRSFWLY 420
++G + + I AAL N+ LN+ALIP + GA+ AT ++ + F R+
Sbjct: 347 LLGSANRQITVTRITGVAALFNVTLNLALIPRFDFMGASAATVMTEALMTLLFLRT---V 403
Query: 421 RKTGIHPFTKN------YLKPLGIGVLLVGMIKAVHLNVGNIWYALILLGLILVVYSLLV 474
R G P ++ L P ++L+ + ++ LI + L LV Y +
Sbjct: 404 RDLGFGPAWRDLHVAWRILLPAAASIILLLLPLSI----------LIRIPLALVAYIAGI 453
Query: 475 LVVKSLDREDLELMLEI 491
L+ +LD D ++ I
Sbjct: 454 LLTGALDSVDRAVVRSI 470
>pir||F71152 probable lipopolysaccharide O-side chain biosynthesis protein
(O-antigen transpoter) - Pyrococcus horikoshii
>gi|3256824|dbj|BAA29507.1| (AP000002) 432aa long
hypothetical lipopolysaccharide O-side chain
biosynthesis protein (O-antigen transpoter) [Pyrococcus
horikoshii]
Length = 432
Score = 122 bits (302), Expect = 1e-26
Identities = 101/409 (24%), Positives = 184/409 (44%), Gaps = 26/409 (6%)
Query: 11 RIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTS 70
RIA+ ++F ++S GF + ARH ++YG+ + AL + I ++A G
Sbjct: 6 RIAKNMAVLFLARIVSMLFGFFYVMYTARHLGPANYGILSFALALNGIFGVIANFGLDPL 65
Query: 71 LPREIPVYREKYPEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPLKV 130
RE V R+K + V+ ++ T L+ F+ + E+ + + + +
Sbjct: 66 TVRE--VARDKTLARKYLANGLVLKLLFGTLTFLIVFVVVNLLGYPEITR-----KVVYI 118
Query: 131 ISLALPFYALTSMLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIFGKSIKAVVIAY 190
I+L+ L ++ I Q F R+ E + I L FA + + G ++ + Y
Sbjct: 119 ITLSTIIAGLNNLFNDIYQAFERM-EFISIGQILQSVCSLIFAIIAIKLGLNVVYFAVIY 177
Query: 191 TLSWVVTL----FLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILGFVMTWTD 246
+ + L + W + + KI D N KS++ + P ++ I + D
Sbjct: 178 LIVNSIVLGYHVVITTWKFLKPKI-----EVDFNFWKSVVREAWPFAVTSIFVSIYYQID 232
Query: 247 TLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQMT 306
+M+ Y + VG YN+A L +L I + P+ S+ Y+ K + +++ +
Sbjct: 233 IVMLSYMKGDKIVGWYNAAYRLVLILLIIPQIYFATVYPVMSKFYSISK-DSLRSIFERS 291
Query: 307 TKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQIL----AIGFMFHTFLGLNGL 362
K+ ++ + + L + L I ++G+++ A++ALQIL I F+ F L
Sbjct: 292 FKYMMIIGISIGLGITLLADKIILLVYGDEFAPATIALQILVWSEVISFVNIVFANLLNA 351
Query: 363 TLVIIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVA 411
T S LN LI+A+ N++LN LIP Y GA AT ++ IV+
Sbjct: 352 T----NNSLLNTKQTLISAILNVILNFILIPKYSYIGAGLATVLTKIVS 396
>gi|11498203 polysaccharide biosynthesis protein, putative [Archaeoglobus
fulgidus] >gi|7483918|pir||C69324 polysaccharide
biosynthesis protein homolog - Archaeoglobus fulgidus
>gi|2650029|gb|AAB90646.1| (AE001064) polysaccharide
biosynthesis protein, putative [Archaeoglobus fulgidus]
Length = 482
Score = 118 bits (294), Expect = 1e-25
Identities = 111/478 (23%), Positives = 216/478 (44%), Gaps = 21/478 (4%)
Query: 21 AGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSLPREIPVYRE 80
+ LI G + + +AR +G+++LA+++ + LG +L R +
Sbjct: 15 SSVLIGNLAGLVISIYVARVLKPELFGIYSLAISVAFLLMTFTDLGINATLVRYVAHANI 74
Query: 81 KYPEKVNRLISTVILVVVATSIILMA-FLFLGSQAIAE-VFKEPKLVEPLKVISLALPFY 138
K +++ R + + A ++ +A LFLGS IAE F +P+L PL++++L + F+
Sbjct: 75 KGDDELVRGYIRSLTKLKALLVLAVASMLFLGSDFIAEQFFSKPELSLPLRIMALYITFF 134
Query: 139 ALTSMLVSISQGFGR-----VREKVYFTNITYPTLFLAFATLGVIFGKSIKAVVIAYTLS 193
++ + I F VR VY I+ TL LG+ ++ V A LS
Sbjct: 135 SMAGFINGIFNAFNDFKANFVRALVY--EISRATLIFLLLYLGLSVAGALLGYVGASLLS 192
Query: 194 WVVTLFLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILGFVMTWTDTLMIGYY 253
++ L +++ R +F D + ++ F+ L + I V + D++MIG
Sbjct: 193 -LIALLAMLFRKLRNFLFGKAKRVDW---RRIVRFTGYLTVGSITWTVFAYVDSVMIGAM 248
Query: 254 LTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQMTTKWTFLL 313
L S +VG Y +A + + +A L+ P+ QL ++ RV+ ++ ++
Sbjct: 249 LPSEDVGFYRAAYNIVGAVSGIVALPGVLF-PVFVQLESEDLRSAFSRVF----RYASII 303
Query: 314 TLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLTLVIIGESKLN 373
P L++ + + F++G YL A+ + +L+I + + LG G +
Sbjct: 304 AFPCTFGLMVIAEPLVKFVYGADYLQAAGVMVVLSI-LILRSALGFWGALFNAKEMPEYP 362
Query: 374 MIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFWLYRKTGIHPFTKNYL 433
+ + N++LN I G+ GAA AT +S F +F + G+ L
Sbjct: 363 VYATFFGMILNVVLNYVFILRMGIVGAAIATVMSNAFVWFTLAFLSVKHFGVVVRASYIL 422
Query: 434 KPLGIGVLLVGMIKAVHLNVGNIWYALILLGLILVVYSLLVLVVKSLDREDLELMLEI 491
KPL ++ ++ + G++ A++ + + +Y LL+ V++ RED+E + +
Sbjct: 423 KPLTSAAVMTALL--WYAGFGSLADAILKVLVGAGIYFLLLYVLRGFGREDVEYLRSV 478
>pir||A69144 succinoglycan biosynthesis transport protein - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621399|gb|AAB84848.1| (AE000819) succinoglycan
biosynthesis transport protein [Methanobacterium
thermoautotrophicum]
Length = 477
Score = 117 bits (291), Expect = 3e-25
Identities = 110/494 (22%), Positives = 212/494 (42%), Gaps = 40/494 (8%)
Query: 11 RIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTS 70
RI + G+ + +++ + F+ + +AR E+ +G +N A ++ T+ LG
Sbjct: 6 RIVKNIGVTGSAQILTALMSFVFMIYLARFLGEAGFGKYNFAFSLTTLLVTFTDLGVNQL 65
Query: 71 LPREIPVYREKYPEKVNRLISTVILVVVATSIIL--MAFLF-LGSQAIAEVFKEPKLVEP 127
L REI R+ VN + I + + T +++ +A+ F L S A
Sbjct: 66 LVREIARERDLSSYYVNNAVFLKIPLSILTFVLIAVLAWTFNLSSDA------------- 112
Query: 128 LKVISLALPFYALTSMLVSIS-------QGFGRVREKVYFTNITYPTLFLAFATLGV-IF 179
S+ L + + ++L+++S Q + R+ F I LF+ LGV I
Sbjct: 113 ----SILLYLFGIYNILLTVSGTYLSLFQAWERMEYVALFQIIE--RLFIVTLGLGVLIM 166
Query: 180 GKSIKAVVIAYTLSWVVTLFLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILG 239
G + V Y + ++ + + S + + D + K LL LP L+ +
Sbjct: 167 GYGLMVVAWVYVFAGILDI-AVAASLSFRRFIRPSRSIDTGLQKKLLLMGLPFGLNSLFA 225
Query: 240 FVMTWTDTLMIGYYLTSREVGIYNSA-TPLAKMLPIFLASFSYLYMPISSQLYAQGKVKE 298
DT+++G VGIYN+A PL + I S P+ S+ Y +
Sbjct: 226 VFFFKIDTVLLGLLRDDVAVGIYNAAYNPLLALSMIVAGMVSAAVYPVMSR-YFREDAGS 284
Query: 299 MGRVYQMTTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLG 358
+ ++++++ + P+ ++ I + Y A A QILA+
Sbjct: 285 LSGFTRISSRYLAIAGFPVAAGCLVLADRFIGLFYAGGYSGAVPAFQILALFIPIRLVST 344
Query: 359 LNGLTLVIIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFW 418
+ G L I M+ I+A NI+LN+ LIP+Y GAA AT +S ++ ++
Sbjct: 345 ITGTLLSSIDRQGYRMLSVGISAAFNIVLNMILIPYYSYIGAAAATVLSELLLYILFLYY 404
Query: 419 LYRKTGIHPFTKNYLKPLGIGVLLVGMIKAV-HLNVGNIWYALILLGLILVVYSLLVLVV 477
+ + G + ++KP L+ MI + +N+ L+++G ++Y + ++++
Sbjct: 405 IGKAHGDVKLNREFIKPAAASALMALMIYPLREINL------LLVIGAAALIYLISLILL 458
Query: 478 KSLDREDLELMLEI 491
+ ED L++ +
Sbjct: 459 REFREEDRALLMNL 472
>pir||A69063 O-antigen transporter homolog - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622586|gb|AAB85946.1| (AE000908) O-antigen
transporter homolog [Methanobacterium
thermoautotrophicum]
Length = 366
Score = 115 bits (284), Expect = 2e-24
Identities = 81/360 (22%), Positives = 171/360 (47%), Gaps = 11/360 (3%)
Query: 153 RVREKVYFTNITYPTLFLAFATLGVIFGKSIKAVVIAYTLSWVVTLFLIVWDY--SRVKI 210
R E+V+ + + F G + G S+ +A +S ++ ++ Y
Sbjct: 8 RAVEQVFMITMAVVFVMAGFYAAGAVIGTSMG--FLASAISAIIIFRRLINSYFPPAPPE 65
Query: 211 FTLELTFDLNIAKSLLTFSLPLLLSGILGFVMTWTDTLMIGYYLTSREVGIYNSATPLAK 270
L L +L + K+L++FS+P++++ + + +IGY++ + VG Y +A P+A+
Sbjct: 66 KRLGLREELGLVKTLISFSIPVIITALSEMAIYDISVFVIGYFMATTSVGYYTAADPVAR 125
Query: 271 MLPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQMTTKWTFLLTLPMFLMLVLFPQATIS 330
+ + S + +P +S+ +A + + + LL LPM + + +F +
Sbjct: 126 LPLVISMSVATAVLPAASEAFALKDQNLLETYIVQSYRVVTLLVLPMCVGIAVFSGPLLE 185
Query: 331 FIFGEKYLDASVALQILAIGFMFHTFLGLNGLTLVIIGESKLNMIGDLIAALSNILLNIA 390
+FG ++ + AL IL +G F+T ++ IG +L M + + N++LN+A
Sbjct: 186 LLFGRDFIFGAGALSILVVGMSFYTLFMISSSIAQGIGYPRLPMYVLVGGTIINLVLNVA 245
Query: 391 LIPFYGVNGAAFATSVSYIVANFFRSFWLYRKTGIHPFTKNYLKPLGIGVLLVGMIKAVH 450
L+P G+ G A AT+++ ++ + + TG+ +++ ++ G + +
Sbjct: 246 LVPMLGIEGGALATTLAALIIMIIILWKTTQITGVKLPGMAFIRIATASGVMGGFMILLP 305
Query: 451 LNVGNIWYALILLGLILVVYSLLVLVVKSLDREDLELMLEIEKKLGLNLGILKNFLKRFA 510
N+ + A+I L VY L +L+V +++ D+ L+ ++LG +G L + R A
Sbjct: 306 QNIPGLLAAIIFAPL---VYGLSILLVGGVEKRDVRLI----RRLGARMGPLSGAVARMA 358
>gb|AAC44056.1| (U51197) unknown [Sphingomonas sp. S88]
Length = 452
Score = 106 bits (263), Expect = 5e-22
Identities = 89/386 (23%), Positives = 168/386 (43%), Gaps = 16/386 (4%)
Query: 36 LIARHFSESDYGVFNLALTILTISFIVATLGFPTSLPREIPVYREKYPEKVNRL-ISTVI 94
L+AR F + G F ALT + I++ +G T L R + V + V R +
Sbjct: 61 LVARAFGPAGVGAFGTALTTAQMLVILSLIGLDTILVRTVAVCVSQNRTGVARTAVRHAT 120
Query: 95 LVVVATSIILMAFLFLGSQAIA-EVFKEPKLVEPLKVISLALPFYALTSMLVSISQGFGR 153
V V ++LM + L Q IA + P + L ++ +P A + + +G G
Sbjct: 121 RVAVGGGLVLMVMILLFHQQIATNLLGSPAMAPDLLIMGFLIPVSAYCRLASTTLRGMGD 180
Query: 154 VREKVYFTNITYPTLFLAFATLGVIFGKSIKAVV--IAYTLSWVVTLFLIVWDYSRVKIF 211
+ + L A ++ G + ++ + Y + W+VT+F I
Sbjct: 181 IGKSQMVDGPLGTFLGGAMLAGALLIGVAHNPLLPSVLYLVGWLVTMFAAT-------II 233
Query: 212 TLELTFDLNIAKSL----LTFSLPLLLSGILGFVMTWTDTLMIGYYLTSREVGIYNSATP 267
+T D A+ L L +L++ + F + W T+++ E G++
Sbjct: 234 VRRMTRDWAPAEPLDRPMLRPGFMVLITNVNNFFVDWFATVILAATHGPAEAGLFRVGYQ 293
Query: 268 LAKMLPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQMTTKWTFLLTLPMFLMLVLFPQA 327
+A L + A+ + P+ + Y QG VK + R+ ++T + P+ L +++ P
Sbjct: 294 IASSLKLLSATSETILHPVFAASYEQGDVKRIARIIRITILALLVAASPIALAVLVAPH- 352
Query: 328 TISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLTLVIIGESKLNMIGDLIAALSNILL 387
I +FG+++ + A+Q+L +G +F +G LV+ +L ++ + + + +L
Sbjct: 353 WIMGLFGKQFTAGAAAMQVLVLGQVFGMVFASSGGVLVMANRERLAVVLTMSSVILAAIL 412
Query: 388 NIALIPFYGVNGAAFATSVSYIVANF 413
+ LIP YG GAA A +V + F
Sbjct: 413 ALVLIPPYGALGAAIAIAVPSVFLRF 438
>emb|CAA07405.1| (AJ006986) repeating unit transporter [Streptococcus pneumoniae]
Length = 471
Score = 102 bits (251), Expect = 1e-20
Identities = 109/475 (22%), Positives = 211/475 (43%), Gaps = 30/475 (6%)
Query: 24 LISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSLPREIPVYREKYP 83
L+ L IT + R FS D G + +I+T ++ATLG +EI +R++
Sbjct: 15 LLVIILPIITTPYVTRVFSSDDLGTYGYFSSIVTYFTLLATLGVANYGTKEISAHRKEIG 74
Query: 84 EKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPLKVISLALPFYALTSM 143
+ + S + ++ +A FL + + P+ I L L +
Sbjct: 75 KNFWGIYSLQFGATWLSILLYLALCFLFTS----------MQNPVAYI-LGLSLVSKGLD 123
Query: 144 LVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIFGKSIKAVVIAYTLSWVVTLFLIVW 203
+ + QG R K+ NIT L A +F KS + Y +++T+F ++
Sbjct: 124 ISWLFQGLEDFR-KITVRNITVK---LVGAISIFLFVKSANDL---YLYVFLLTIFELLG 176
Query: 204 DYSR---VKIFTLELTFDLNIAKSLLTFSLPLLLSGILGFVMTWTDTLMIGYYLTSREVG 260
S + F + FD AK L + L L I + D M+G ++++VG
Sbjct: 177 QLSMWLPARQFIGKSYFDWKYAKKHLKPVILLFLPQIAISLYVTLDRTMLGVLASTKDVG 236
Query: 261 IYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQMTTKWTFLLTLPMFLM 320
IY+ A L +L + S + +P S L + G K + ++++M+ L+ P+
Sbjct: 237 IYDQALKLVNILLTLVTSLGSVMLPRVSSLLSSGDYKAVNKMHEMSFLIYNLVIFPIIAG 296
Query: 321 LVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLTLVI-IGESKLNMIGDLI 379
+++ + F G+ + DA A+ I+ F + + G+ ++I ++K M+ +
Sbjct: 297 MLIVNDDFVRFFLGQNFQDARYAIAIMTFRMFFIGWTNIMGIQILIPHNKNKEFMVSTTV 356
Query: 380 AALSNILLNIALIPFYGVNGAAFATSVS----YIVANFFRSFWLYRKTGIHPFTKNYLKP 435
A+ ++ LN+ L+P +G GAA + ++ + + F+ F+L I TK L
Sbjct: 357 PAILSVGLNLLLLPQFGYIGAAIVSVLTEAFVWGIQLFYTRFYLKEVPIIGSMTKTALAS 416
Query: 436 LGIGVLLVGMIKAVHLN-VGNIWYALILLGLILVVYSLLVLVVKSLDREDLELML 489
+ LL+G ++H + N+ +L G ++Y +L +K +D ++L+ ++
Sbjct: 417 AVMYGLLLGSKTSIHFSPTINVLIFSVLGG---IIYLFAILSLKVVDVKELKQII 468
>emb|CAC11841.1| (AL445065) repeating unit transporter related protein [Thermoplasma
acidophilum]
Length = 512
Score = 102 bits (251), Expect = 1e-20
Identities = 106/489 (21%), Positives = 217/489 (43%), Gaps = 26/489 (5%)
Query: 15 GTGIIF--AGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSLP 72
GT +++ G F G + V++ R F+ +D G L L I+ + ++ ++G T++
Sbjct: 9 GTDVLYQYTGAGAQLFSGALFYVVLVRLFNSTDVGAVALFLAIVGLFNLIFSMGLGTAVQ 68
Query: 73 REIPVYREKYPEKVNRLISTVILVVVATSIIL----MAFLFLGSQAIAEVFKEPKLVEPL 128
+ K + +++ ++A +L +AF+ S I+ +F L
Sbjct: 69 HFASYHLGK---REYATAKSIVFKILALGFLLSLGGLAFMLYTSTGISIIFMHTTRYSNL 125
Query: 129 -KVISLALPFYALTSMLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIFGKSIKAVV 187
+++SL L L +L + G R I + T + +G F KS+ ++
Sbjct: 126 IRLLSLVLVGNVLFGILNGAALGLQLFRTSGLMNIIIWVTYYSIALMMGFFF-KSLTYLI 184
Query: 188 IAYT----LSWVVTLFLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILGFVMT 243
I +T + L+ I+ + +LT L L FS+P+LLS I+ + +
Sbjct: 185 IGWTAGIFFGVFMYLYFIITSTRNYRGTPRKLTPSL-----LFQFSIPVLLSSIISYGAS 239
Query: 244 WTDTLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMGRVY 303
+TD ++ + + IYN A +A + ++ + + +P S+ Y G + +
Sbjct: 240 YTDRFIVAGLMPLSSLAIYNFALLIATSIGFLVSPLNNIMLPKFSEFYGMGNRENIRSRT 299
Query: 304 QMTTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLT 363
+ T + +P L + + I + G Y + + A+ I++I F+ N +T
Sbjct: 300 AIATVVVSAVYVPAALGIAALSRMIIVLLAGRYYEEGADAISIVSISSAI--FITSNVMT 357
Query: 364 LVI--IGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFWLYR 421
+I + ++++ + A SN++ +I LIP +G+ GA+ S Y A+F ++ +
Sbjct: 358 QLIAAVRKTRVFIYSSSAALASNLVFSILLIPRFGIEGASIGFSSVY-AASFIVVYYYAK 416
Query: 422 KTGIHPFTKNYLKPLGI-GVLLVGMIKAVHLNVGNIWYALILLGLILVVYSLLVLVVKSL 480
KTG+ L + I +++V ++ + ++ G Y L+ LI + + ++ L
Sbjct: 417 KTGLFRTDMMGLTKIWISSIVMVIIVVFLEVHFGTALYLLVPYILIGALTYMGMIKATRL 476
Query: 481 DREDLELML 489
+ D EL L
Sbjct: 477 IKRDEELFL 485
>emb|CAB59295.1| (AJ131984) putative repeating unit transporter [Streptococcus
pneumoniae]
Length = 471
Score = 101 bits (250), Expect = 2e-20
Identities = 109/475 (22%), Positives = 211/475 (43%), Gaps = 30/475 (6%)
Query: 24 LISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSLPREIPVYREKYP 83
L+ L IT + R FS D G + +I+T ++ATLG +EI +R++
Sbjct: 15 LLVIILPIITTPYVTRVFSSDDLGTYGYFSSIVTYFTLLATLGVANYGTKEISAHRKEIG 74
Query: 84 EKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPLKVISLALPFYALTSM 143
+ + S + ++ +A FL + + P+ I L L +
Sbjct: 75 KNFWGIYSLQFGATWLSILLYLALCFLFTS----------MQNPVAYI-LGLSLVSKGLD 123
Query: 144 LVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIFGKSIKAVVIAYTLSWVVTLFLIVW 203
+ + QG R K+ NIT L A +F KS + Y +++T+F ++
Sbjct: 124 ISWLFQGLEDFR-KITVRNITVK---LVGAISIFLFVKSANDL---YLYVFLLTIFELLG 176
Query: 204 DYSR---VKIFTLELTFDLNIAKSLLTFSLPLLLSGILGFVMTWTDTLMIGYYLTSREVG 260
S + F + FD AK L + L L I + D M+G ++++VG
Sbjct: 177 QLSMWLPARQFIGKSYFDWKYAKKHLKPVILLFLPQIAISLYVTLDRTMLGVLASTKDVG 236
Query: 261 IYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQMTTKWTFLLTLPMFLM 320
IY+ A L +L + S + +P S L + G K + ++++M+ L+ P+
Sbjct: 237 IYDQALKLVNILLTLVTSLGSVMLPRVSSLLSSGDYKAVNKMHEMSFLIYNLVIFPIIAG 296
Query: 321 LVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLTLVI-IGESKLNMIGDLI 379
+++ + F G+ + DA A+ I+ F + + G+ ++I ++K M+ +
Sbjct: 297 MLIVNDDFVRFFLGQNFQDARYAIAIMTFRMFFIGWTNIMGIQILIPHNKNKEFMVSTTV 356
Query: 380 AALSNILLNIALIPFYGVNGAAFATSVS----YIVANFFRSFWLYRKTGIHPFTKNYLKP 435
A+ ++ LN+ L+P +G GAA + ++ + + F+ F+L I TK L
Sbjct: 357 PAVLSVGLNLLLLPQFGYIGAAIVSVLTEAFVWGIQLFYTRFYLKEVPIIGSMTKTALAS 416
Query: 436 LGIGVLLVGMIKAVHLN-VGNIWYALILLGLILVVYSLLVLVVKSLDREDLELML 489
+ LL+G ++H + N+ +L G ++Y +L +K +D ++L+ ++
Sbjct: 417 AVMYGLLLGSKTSIHFSPTINVLIFSVLGG---IIYLFAILSLKVVDVKELKQII 468
>sp|P39855|CAPF_STAAU CAPF PROTEIN >gi|506702|gb|AAA64645.1| (U10927) CapF
[Staphylococcus aureus]
Length = 396
Score = 95.6 bits (234), Expect = 1e-18
Identities = 86/409 (21%), Positives = 182/409 (44%), Gaps = 27/409 (6%)
Query: 19 IFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSLPREIPVY 78
+F ++S F+ ++I R + D G +N AL I F+ +L R + V
Sbjct: 8 MFVANILSALCKFLILLVIVRLGTPEDVGRYNYALVITAPIFLFISLKI-----RSVIVT 62
Query: 79 REKYPEKVNRLISTVILVVVATSIILMAFLFL---GSQAIAEVFKEPKLVEPLKVISLAL 135
+KY N IS ++ + + T I + F+++ G + KL E +K + +
Sbjct: 63 NDKYSP--NEYISAILSLNIITLIFVAIFVYVLGNGDLTTILIVSLIKLFENIKEVPYGI 120
Query: 136 PFYALTSMLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIFGKSIKAVVIAYTLSWV 195
+ L+ IS G + + F ++ ++ F ++ ++ +S +
Sbjct: 121 YQKNESLKLLGISMGIYNILSLILF--------YIIYS-----FSHNLNMALLFLVISCI 167
Query: 196 VTLFLIVWDYSRVKIFTLELTFDLNIAK--SLLTFSLPLLLSGILGFVMTWTDTLMIGYY 253
+ F I+ + K + ++L ++ NIAK + ++PL S LG + T +++
Sbjct: 168 FS-FAIIDRWYLSKYYNIKLHYNNNIAKFKEIFILTIPLAFSSALGSLNTGIPRIVLENL 226
Query: 254 LTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQMTTKWTFLL 313
+GI+++ + + +F S S +++P +LY K E ++ + +
Sbjct: 227 FGKYTLGIFSTIAYVLVIGGLFANSISQVFLPKLRKLYKDEKKIEFEKLTRKMVFIGIFI 286
Query: 314 TLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLTLVIIGESKLN 373
+ ++ + +A +S +FG++Y + ++ L IL+ G +F G T++ G+ +N
Sbjct: 287 GMCSVILSLFLGEALLSLLFGKEYGENNIILIILSFGLLFILSGIFLGTTIIATGKYNVN 346
Query: 374 MIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFWLYRK 422
LI ++ + LIP Y + GAA ++S VA ++ Y++
Sbjct: 347 YKISLILLFCILIFSFLLIPKYSLLGAALTITISQFVA-LISYYYFYKR 394
>pir||D69727 biosynthesis of teichuronic acid tuaB - Bacillus subtilis
>gi|2454557|gb|AAB94863.1| (AF015609) unknown [Bacillus
subtilis] >gi|2636086|emb|CAB15577.1| (Z99122) alternate
gene name: yvhB [Bacillus subtilis]
Length = 483
Score = 95.2 bits (233), Expect = 2e-18
Identities = 106/463 (22%), Positives = 207/463 (43%), Gaps = 53/463 (11%)
Query: 5 VTQALARIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVAT 64
+T+ + A+ T I T+ T + + L+ + +++G+ + T+ + IV
Sbjct: 4 ITKQIMSGAKWTSI---STMCITIIQIVQFALLGNMMTLTEFGLVGMITTVTVFAQIVLD 60
Query: 65 LGFPTSLPREIPVYREKYPEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKL 124
+GF +L + R+ E R +ST+ + + T ++L L++ S IA ++ +L
Sbjct: 61 MGFGAAL-----IQRDDATE---RQLSTLYWLNIMTGVLLFVLLYVSSPVIAGFYQREEL 112
Query: 125 VEPLKVISLALPFYALTSMLVSISQGFGRVREK-VYFTNITYPTLFLAFATLGVI-FGKS 182
V ++++ A+ ++ I Q + + +K ++F ++ +F + G +
Sbjct: 113 VFLVRIL-------AIMFLIAPIGQQYQYMLQKQLHFNTLSKIEIFSNVLSFGYLAIAVF 165
Query: 183 IKAVVIAYTLSWVV---TLFLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILG 239
+ ++AY +S V+ + ++ W R K + FDL K +F L S ++
Sbjct: 166 MMDAILAYVISQVLLQSSKGILYWAVYRKK-WHPAFVFDLRGMKDFFSFGAFQLSSRLVN 224
Query: 240 FVMTWTDTLMIGYYLTSREVGIYNSA-----TPLAKMLPIFLASFSYLYMPISSQLYAQG 294
+ D ++IG ++ + +GIYN A P+ K+ PI + + PI ++ +
Sbjct: 225 RLGANIDMILIGRFIGAEALGIYNLAYQIVTIPVLKINPIV----TRVAFPIFAKNKYEN 280
Query: 295 KVKEMGRVYQMTTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFH 354
V G + TK L++ P+ + LV A I+ +FGEK+L A L +LAI +
Sbjct: 281 SVIREG--FLNMTKMLALVSFPLLIGLVSVSDAFITAVFGEKWLAAVPILNVLAIVGILR 338
Query: 355 TFLGLNGLTLVIIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYI----- 409
+ NG L+ G + L D S +LL L F V + T V+++
Sbjct: 339 VLMNPNGSVLLAKGRADLAFYWD-----SGVLLLYGLSLFAAVQTGSLLT-VAWVYAIIS 392
Query: 410 VANFFRSFWLYR---KTGIHPFTKNYLKPL----GIGVLLVGM 445
V NF WL K + + ++ +KP +G++ G+
Sbjct: 393 VVNFLIGRWLLAYVIKLNLSAYFQSIMKPFLITAAMGIIAFGV 435
>dbj|BAB07430.1| (AP001519) unknown conserved protein in others [Bacillus
halodurans]
Length = 483
Score = 92.1 bits (225), Expect = 1e-17
Identities = 109/474 (22%), Positives = 204/474 (42%), Gaps = 27/474 (5%)
Query: 10 ARIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPT 69
A + + +F L F I +IA S G + L++ + ++A LG
Sbjct: 10 AHMLKKFSYLFISNLGLKFNSLIFSFIIAHWQGASFLGAMFIFLSVHSFGLVLAKLGLFY 69
Query: 70 SLPREIPVYREKYPEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPLK 129
SL EK +VN + I A +I L+AFL L I +F P L +
Sbjct: 70 SL--------EKKLSEVNIDKNKYISSAFAINIALLAFLLL----ILIIFS-PYLDSYIG 116
Query: 130 V--ISLALPFYALTSMLVSISQG-FGRVREKVYFTNITY--PTLFLAFATLGVIFGKSIK 184
+ ++AL F L ++ F + F+ + + LF A + + + + SI+
Sbjct: 117 INNATVALGFSVLLGNFINFGYAIFKSNLQFELFSKLQFFRDFLFRALSIILLFYTSSIE 176
Query: 185 AVVIAYTLSWVVTLFLIVWDYSRVKIFTLELTFDLN-IAKSLLTFSLPLLLSGILGFVMT 243
V+I+ + V L L+++ +V + L + I K L+ + I
Sbjct: 177 VVLISKVM---VELILLIYTVIKVSKYNLSWSSPSKAIIKELIELLRYNSVLEIRTVTFN 233
Query: 244 WTDTLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMGRVY 303
+ D MI ++L VG+Y ++ + I + + P S+ ++GK ++ +
Sbjct: 234 YIDIWMINFFLGDFYVGLYQLVWQISTGVLIVGKALIGVTFPYFSRWSSEGKYDKISKYT 293
Query: 304 QMTTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLT 363
T K + + LP + + + +SF FGE+++ AS+ L IL G +F +
Sbjct: 294 GFTIKLSLFMPLPTLFLSLTYSNEIMSF-FGEEFIRASIVLIILLFGSLFRPLQEITSKL 352
Query: 364 LVIIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFWLYRKT 423
LV G++K++ + + L NI LN LI + GAA AT++S I+ F++ + +
Sbjct: 353 LVSTGKAKISYRISVFSGLLNIALNFILILLLHIEGAALATTLSNIIIASISIFYIKKHS 412
Query: 424 GIH--PFTKNYLKPLGIGVLLVGMIKAVHLNVGNIWYALILLGLILVVYSLLVL 475
I F + ++L+ + + N W ++GLI+ + ++V+
Sbjct: 413 PIEFKAFKAVKSNVMASIIMLLTIYSLQYFNF--FWIVGSIIGLIMWLTVIMVI 464
>gb|AAD52177.1|AF144879_16 (AF144879) unknown [Leptospira interrogans]
Length = 447
Score = 90.5 bits (221), Expect = 4e-17
Identities = 105/422 (24%), Positives = 185/422 (42%), Gaps = 45/422 (10%)
Query: 9 LARIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFP 68
L I +G +F + +G V IAR+ YG N + +A +G
Sbjct: 12 LKDILHNSGWLFFDKIFRMGMGMFLGVWIARYLGPDSYGKLNYVIAY------IALIGSF 65
Query: 69 TSLPREIPVYREKYPEKVNR--LISTVILVVVATSIILMAFLFLGSQAIAEVFK--EPKL 124
T+L + V RE EK + +IST L+ + I F + G+ + + + E L
Sbjct: 66 TNLGLDGVVVRELIKEKAQKQEIISTSFLLQLIAGI----FAYGGAILLIPILRPDESDL 121
Query: 125 VEPLKVISLALPFYALTSMLV-----SISQGFGRVREKVYFTNITYPTLFLAFATLGVIF 179
+ ++ L L F ++ + +S+ F + ++F +F L ++
Sbjct: 122 FWMVFLVGLTLIFRSVGVIKYWYEAQVLSKYFVWLENGLFF-------VFSGVRILLILN 174
Query: 180 GKSIKAVVIAYTLSWVVTLF--LIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGI 237
G + A + + ++LF +++ Y + L + A++LL S LLLSG+
Sbjct: 175 GFGVFAFIWVGLIESFISLFGYSLLYKYHNGSLSVLHANWKR--AQTLLRDSWMLLLSGL 232
Query: 238 LGFVMTWTDTLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLY-AQGKV 296
V D +MIG + VG+Y +A ++++ + ++ M I+S ++ A K
Sbjct: 233 AVIVYMRIDQIMIGQMMGDEAVGVYTAAVKISEV-------WYFIPMTIASSIFPAILKA 285
Query: 297 KEMG-RVY----QMTTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGF 351
KE ++Y + + FLL L + + + I FGEK+ +A V L I
Sbjct: 286 KEFSQKLYLERLSLLHSFMFLLALMIAIPMTFLSDPIIQMFFGEKFSEAGVILAIHIWAG 345
Query: 352 MFHTFLGLNGLTLVIIGE-SKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIV 410
+F FLG+ + K + + L+NI+LN LIP YG+ GAA AT +S +
Sbjct: 346 IF-VFLGVASSRYYLTENLPKGELYKSISGCLANIVLNYFLIPLYGIKGAAIATVISQFI 404
Query: 411 AN 412
A+
Sbjct: 405 AS 406
>gb|AAD19923.1| (AF105116) putative oligosaccharide repeat unit transporter
[Streptococcus pneumoniae]
Length = 481
Score = 88.9 bits (217), Expect = 1e-16
Identities = 104/486 (21%), Positives = 221/486 (45%), Gaps = 48/486 (9%)
Query: 23 TLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSLPREIPVYREKY 82
TL + IT I+R + + G+ + +I ++A+LG T + + R+
Sbjct: 17 TLSNIIFPLITFPYISRILNPNGIGLTSFFSSIGNYGILLASLGISTYGIKAVASVRDDR 76
Query: 83 PEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPLKVISLALPFYALTS 142
+K+++++ ++++ VA SII A L + I ++ +E L+ L+ PF
Sbjct: 77 -DKLSKVVQELMIINVAMSIITTAILLFMTIFITQLNREFSLLLITCGTILSSPF----- 130
Query: 143 MLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIFGKSIKAVVIAYT--LSWVVTLFL 200
+++ + + E Y T + L+ + ++ + +V A S + + L
Sbjct: 131 ---ALNWLYSGMEEYTYITTRSVVFTILSLILIFLLVKRPEDYIVFASISLFSSLSSNIL 187
Query: 201 IVWD---YSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILGFVMTWTDTLMIGYYLTSR 257
+W + +K++ L F + F+ L ++ + T DT+M+G+ +
Sbjct: 188 NLWHSRHFINIKLYK-NLQFKYHFKPMWYLFASLLAVN-----IYTNLDTVMLGFINGNE 241
Query: 258 EVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQMTTKWTFLLTLPM 317
VG Y+ A+ + +L + S S + +P S ++ ++ + ++ F + +P+
Sbjct: 242 AVGYYSVASKVKWILLSLITSISAVLLPRLSFYISKNDTSNFIKMLKESSAVIFFIAIPL 301
Query: 318 FLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLTLVI-IGESKLNMIG 376
+ ++ + +I + G +YL A++A+QIL + F + G ++I + K M+
Sbjct: 302 MVFFIVEAKDSILLLGGSQYLPATLAMQILMPILLISGFSNITGNQILIPMNREKYFMVA 361
Query: 377 DLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFWLYRKTGIHPFTKNYL--- 433
I A+ N++LN+ L+P +G+ GA+ AT + L + T F+K YL
Sbjct: 362 VTIGAVINLILNLLLMPKFGIIGASVATLFAE----------LSQMTVQLHFSKEYLVSN 411
Query: 434 ---KPLGIGVLLVGMIKAVHLNVGN-------IWYALILLGLILVVYSLLVLVVKSLDRE 483
K L + V++ ++ + L + N +Y+L+L G + L LV+ L +E
Sbjct: 412 ISIKSL-VNVIIATVVSTIPLIILNQLITITIPFYSLMLAGF---AFFSLYLVILLLLKE 467
Query: 484 DLELML 489
++ + L
Sbjct: 468 EVTIQL 473
>pir||G69992 spore cortex protein homolog ytgP - Bacillus subtilis
>gi|2293198|gb|AAC00276.1| (AF008220) YtgP [Bacillus
subtilis] >gi|2635489|emb|CAB14983.1| (Z99119) similar
to spore cortex protein [Bacillus subtilis]
Length = 544
Score = 88.5 bits (216), Expect = 2e-16
Identities = 93/457 (20%), Positives = 195/457 (42%), Gaps = 45/457 (9%)
Query: 10 ARIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPT 69
+++ RGT ++ GT IS LG + + + + +F T+ +AT+GFP
Sbjct: 3 SKLLRGTFVLTLGTYISRILGMVYLIPFSIMVGATGGALFQYGYNQYTLFLNIATMGFPA 62
Query: 70 SLPREIPVYREKYPEKVNR-LISTVILVVVATSIILMAFLFLGSQAIAEVFKEPK----- 123
++ + + Y K + +R ++ + V++ T +I L+L + AE+ K
Sbjct: 63 AVSKFVSKYNSKGDYETSRKMLKAGMSVMLVTGMIAFFILYLSAPMFAEISLGGKDNNGL 122
Query: 124 ----LVEPLKVISLALPFYALTSML------------VSISQGFGRVREKVYFTNITYPT 167
+V ++++SLAL + S++ ++SQ ++ ++ + T+
Sbjct: 123 TIDHVVYVIRMVSLALLVVPIMSLVRGFFQGHQMMGPTAVSQVVEQIVRIIFLLSATFLI 182
Query: 168 LFLAFATLGVIFGKSIKAVVIAYTLSWVVTLFLIVWDYSRVKIFTL----ELTFDLNIAK 223
L + L + G + A +I +V L+ I W+ + + + T +L+ K
Sbjct: 183 LKVFNGGLVIAVGYATFAALIG-AFGGLVVLY-IYWNKRKGSLLAMMPNTGPTANLSYKK 240
Query: 224 ---SLLTFSLPLLLSGILGFVMTWTDT-------LMIGYYLTSRE-VGIYNSATPLAKML 272
L +++ P + G+ + + DT + G+ S++ + I M+
Sbjct: 241 MFFELFSYAAPYVFVGLAIPLYNYIDTNTFNKAMIEAGHQAISQDMLAILTLYVQKLVMI 300
Query: 273 PIFLA-SFSYLYMPISSQLYAQGKVKEMGRVYQMTTKWTFLLTLPMFLMLVLFPQATISF 331
P+ LA +F +P ++ + G K + + T + L +P + + L T +F
Sbjct: 301 PVSLATAFGLTLIPTITESFTSGNYKLLNQQINQTMQTILFLIIPAVVGISLLSGPTYTF 360
Query: 332 IFGEKYLDASVALQIL----AIGFMFHTFLGLNGLTLVIIGESKLNMIGDLIAALSNILL 387
+G + L + IL + +F F +N L I + K ++ +I + ++L
Sbjct: 361 FYGSESLHPELGANILLWYSPVAILFSLFT-VNAAILQGINKQKFAVVSLVIGVVIKLVL 419
Query: 388 NIALIPFYGVNGAAFATSVSYIVANFFRSFWLYRKTG 424
N+ LI +GA AT++ YI + + + R G
Sbjct: 420 NVPLIKLMQADGAILATALGYIASLLYGFIMIKRHAG 456
>sp|P37781|RFBE_SHIFL PUTATIVE O-ANTIGEN TRANSPORTER >gi|1084131|pir||JC4069 rfbX protein
- Shigella flexneri >gi|454902|emb|CAA50771.1| (X71970)
rfbE [Shigella flexneri]
Length = 418
Score = 87.8 bits (214), Expect = 3e-16
Identities = 94/419 (22%), Positives = 178/419 (42%), Gaps = 38/419 (9%)
Query: 22 GTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSLPREIPVYREK 81
G I T + + +AR +GV+ +A+ ++ + I +G S+ REI ++R+
Sbjct: 13 GYAIPTLIAIPSLGFLARGLGPEGFGVYTIAIALVGYAGIF-DVGLTRSVIREIAIHRDN 71
Query: 82 YPEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFK-----EPKLVEPLKVISLALP 136
+ E+ ++IST +V S L + S I K + K++++ +P
Sbjct: 72 HHERT-KVISTSTSFLVLFSCFGAFLLLIFSDGIVNYLKISGVEHSDIQLAFKLLAICIP 130
Query: 137 FYALTSMLVSISQG---FG--RVREKVYFTNIT-YPTLF------LAFATLGVIFGKSIK 184
+ L + +I +G FG +++ + + I P +F L+ A G+IF + I
Sbjct: 131 LFILNQLWSAILEGDEKFGIVNIQKSISSSCIAGIPAIFVFYSATLSAAVAGLIFARVIS 190
Query: 185 AVVIAYTLSWVVTLFLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILGFVMTW 244
+V AY Y R I + F K L F + +S I+ VM +
Sbjct: 191 ILVSAY--------------YVRNDIKISGVHFCYKTFKRLFFFGGWMTVSNIISPVMVY 236
Query: 245 TDTLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQ 304
D ++ + + +V Y++ + L I A+ P S + K R
Sbjct: 237 FDRFIVSNIMGAEKVAFYSAPAEVILKLGIIPAAIGRAVFPRLSNIK---DFKAFKRNVN 293
Query: 305 MTTKWTFLLTLPMFLMLVLFPQATISFIFGEKY-LDASVALQILAIGFMFHTFLGLNGLT 363
+ FL+ LP+ ++ +L+ + FGE Y +++ L +L IGF F+ +
Sbjct: 294 KSLLLMFLICLPVIIIGLLYSGLVLKIWFGENYQINSFNILNVLLIGFFFNALAMIPFSA 353
Query: 364 LVIIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFWLYRK 422
+ +G+SK+ + + + L ++ YG+ GAA + S+ I+ WLY +
Sbjct: 354 IQALGKSKITALIHCAELVPYLALLYFMVEKYGLLGAAISWSIRVILDALLLQ-WLYTR 411
>dbj|BAB04952.1| (AP001511) involved in spore cortex synthesis [Bacillus halodurans]
Length = 522
Score = 87.8 bits (214), Expect = 3e-16
Identities = 106/506 (20%), Positives = 212/506 (40%), Gaps = 43/506 (8%)
Query: 14 RGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSLPR 73
+GT I+ LI+ FLGF+ R+++AR G++ +A+ L + + G P ++ +
Sbjct: 8 KGTFILIIAGLITRFLGFVNRIVVARIMGAEGVGLYVMAVPTLLLVITITQFGLPVAISK 67
Query: 74 ---EIPVYREKYPEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPLKV 130
E ++ K ++ST I + ++ + A + L + + + + PL
Sbjct: 68 LVAEADALNDRSRIKRILVVSTTITLTLSI-VFTTAMILLAPMIASTLLTDSRAYWPLVA 126
Query: 131 ISLALPFYALTSMLVSISQGFGRVREKVY------FTNITYPTLFL-AFATLGVIFGKSI 183
IS +P AL+S++ QG ++ Y IT+ L AF LGV + +
Sbjct: 127 ISPIVPIVALSSVMRGYFQGLQNMKPTAYSQVIEQVVRITFVALLTSAFLPLGVEYAAA- 185
Query: 184 KAVVIAYTLSWVVTLFLIVWDYSRVKIFTLELTFDLNIAKSLLTF------SLPLLLSGI 237
+I+ L + +L ++ + R K F + F + + TF S+P S +
Sbjct: 186 -GAMISVVLGELASLLYMIVMFKRKKSFRIRQKFFAYLGEGKKTFVDLMAISVPTTGSRL 244
Query: 238 LGFVMTWTDTLMIGYYLTSREVGIYNSATPLAKM---------LPIFLA-SFSYLYMPIS 287
+G V + + +++ L V + ++ LP F+ S S +P
Sbjct: 245 VGSVSYFFEPIVVAQSLALAGVATAVATQQYGQLAGFVIPLLTLPTFITYSLSVSLVPAI 304
Query: 288 SQLYAQGKVKEMGRVYQMTTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQIL 347
S+ A+ + + + L ++L +F + ++ ++ +A+V ++++
Sbjct: 305 SEAAAKKRYPLIHHRLGQALRLAMLSGGISVVVLYVFAEPVMALMYDAP--EAAVFIKVM 362
Query: 348 AIGFMFHTFLGLNGLTLVIIGESKLNMIGDLIAALSNI--LLNIALIPFYGVNGAAFATS 405
A +F F G TL + +K M+ A+ I + +A P G+ GAA A
Sbjct: 363 APFTIFLYFQGPLQSTLQALNLAKAAMMNSFYGAIVKIAAIFALATRPELGIMGAALAIV 422
Query: 406 VSYIVANFFRSFWLYRKTGIHPFTKNYLKPLGIGVLL---VGMIKAVHLNVGNIW----Y 458
+ ++ + + + T N + VLL V VH + W
Sbjct: 423 IGILLVTTLHFASVVKTISL---TVNIIFIAKASVLLGASVVFSSLVHRYAFSDWPLMIQ 479
Query: 459 ALILLGLILVVYSLLVLVVKSLDRED 484
L+ +GL ++ Y+LL L++ + +E+
Sbjct: 480 TLLAIGLTVLCYALLALLLGLVKKEE 505
>emb|CAB43612.1| (AJ239004) oligosaccharide repeat unit transporter [Streptococcus
pneumoniae]
Length = 486
Score = 86.2 bits (210), Expect = 8e-16
Identities = 108/489 (22%), Positives = 205/489 (41%), Gaps = 66/489 (13%)
Query: 32 ITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSLPREIPVYREKYPEKVNRLIS 91
+T+ I R+F +FN LT+ SFI + FP V R + + R+
Sbjct: 1 MTKKSITRNF------IFNTILTMS--SFIFPLISFPY-------VSRVLMADGLGRVTF 45
Query: 92 TVILVVVATSIILMAFLFLGSQAIAEVFKEPK----LVEPLKVISLALPFYA--LTSMLV 145
++ A + ++ G + A K + V L VI+L + F L + +V
Sbjct: 46 ASSIIDYALTFAMLGMPLYGVKVCAGYIKNKEKLSQTVRELLVINLLVGFLVMLLLATMV 105
Query: 146 SISQGFGRVREKVYFTNITYPT-------LFLAFATLGVIFGKSIKAVVIAYTLSWVVTL 198
I F + + + T+ T P L+ A I +++ ++ + L ++V
Sbjct: 106 IIIPRFRQEWQLIIITSSTIPLNIIGIEWLYKALEDYSYISIRTLTFKILGFLLMFLVVR 165
Query: 199 ----FLIVWDYSRVKIFTLELTFDLNIAKSLLTFSL--------------PLLLSGILGF 240
+++ Y+ + + +F LN +S TF L PLL+ L
Sbjct: 166 TKDDYMV---YAAITVLASHGSFILNFFRSR-TFLLENISQRLNLKQHIKPLLILFFLSV 221
Query: 241 VMTW---TDTLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVK 297
T TD +M+G+ + E+G Y++A + ++ + S + +P + Y +GK
Sbjct: 222 SWTIYKNTDVVMMGFLTSDTEIGYYSTALKIRSIVLSVVTSLGTVVLPRLVKYYKEGKYN 281
Query: 298 EMGRVYQMTTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFL 357
E ++ ++ + L +L +V+ + I FI G YL A LQ+ +F +
Sbjct: 282 EAKKILNKSSSFIMLSSLYFIGYIVINAREIILFIAGRNYLGAIPTLQVSIFSAIFVGYS 341
Query: 358 GLNGLT-LVIIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRS 416
+ G LV IG+ + + +I + NI LN +IP + GA ATS+ V +
Sbjct: 342 IMYGTNILVSIGKENVTIQASIIGVVLNICLNFIMIPKFAALGAGIATSIGEAVMVLYEI 401
Query: 417 FWLYRKTGIHPFTKNYLKPLGIGV-----------LLVGMIKAVHLNVGNIWYALI-LLG 464
+L + + N LK + + + VG +++ + + Y++I + G
Sbjct: 402 IYLGKDGWSYFERLNILKIIVVFIFSTFMLYIMKDFFVGYPLFIYIVISGVIYSIIYIFG 461
Query: 465 LILVVYSLL 473
L+++ +LL
Sbjct: 462 LMILRENLL 470
>gb|AAD12960.1| (AF078135) unknown [Leptospira borgpetersenii]
Length = 447
Score = 85.4 bits (208), Expect = 1e-15
Identities = 101/417 (24%), Positives = 181/417 (43%), Gaps = 35/417 (8%)
Query: 9 LARIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFP 68
L I +G +F + +G V IAR+ YG N + +A +G
Sbjct: 12 LKDILYNSGWLFFDKIFRMGMGMFLGVWIARYLGPDSYGKLNYVIAY------IALIGSF 65
Query: 69 TSLPREIPVYREKYPEKVNR--LISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVE 126
T+L + V RE EK ++ ++ST L+ + II A L + E L
Sbjct: 66 TNLGLDGVVVRELIKEKAHKEEILSTSFLLQLIAGIIAFAVAILLIPLLRP--DESDLFW 123
Query: 127 PLKVISLALPFYALTSMLV-----SISQGFGRVREKVYFTNITYPTLFLAFATLGVIFGK 181
+ ++ L L F A++ + +S+ F + ++F +F L ++ G
Sbjct: 124 MVFLVGLTLIFRAVSVVRYWYEAQVLSKYFVWLDNGLFF-------VFSGVRILLILNGL 176
Query: 182 SIKAVVIAYTLSWVVTLF--LIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILG 239
I + + ++LF +++ Y + L + A++LL S LLLSG+
Sbjct: 177 GIFPFIWTGLIESSISLFGYSLLYKYHNGSLSVLHANW--RRARTLLRDSWMLLLSGLAV 234
Query: 240 FVMTWTDTLMIGYYLTSREVGIYNSATPLAKM---LPIFLASFSYLYMPISSQLYAQGKV 296
V D +MIG + VGIY +A ++++ +P+ +AS + + + + + +
Sbjct: 235 IVYMRIDQIMIGQMMGDEAVGIYTAAVKISEVWYFIPMAVASSIFPAILKAKEFSQELYL 294
Query: 297 KEMGRVYQMTTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTF 356
+ +G ++ + FLL L + + + I FGEK+ +A L I +F F
Sbjct: 295 ERLGLLHS----FMFLLALMIAIPMTFLSDPIIRLFFGEKFSEAGNVLAIHIWAGIF-VF 349
Query: 357 LGLNGLTLVIIGE-SKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVAN 412
LG+ + K + + ++NI+LN LIP G+ GAA AT +S VA+
Sbjct: 350 LGVASSRYYLTENLPKGELYKSISGCMTNIILNYFLIPLCGIKGAAIATVISQFVAS 406
>gb|AAB66524.1| (AF004325) putative oligosaccharide repeat unit transporter
[Streptococcus pneumoniae]
Length = 481
Score = 84.3 bits (205), Expect = 3e-15
Identities = 103/486 (21%), Positives = 220/486 (45%), Gaps = 48/486 (9%)
Query: 23 TLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSLPREIPVYREKY 82
TL + IT I+R + + G+ + +I ++A+LG T + + R+
Sbjct: 17 TLSNIIFPLITFPYISRILNPNGIGLTSFFSSIGNYGILLASLGISTYGIKAVASVRDDR 76
Query: 83 PEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPLKVISLALPFYALTS 142
+K+++++ ++++ VA SII A L + I ++ +E L+ L+ PF
Sbjct: 77 -DKLSKVVQELMIINVAMSIITTAILLFMTIFITQLNREFSLLLITCGTILSSPF----- 130
Query: 143 MLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIFGKSIKAVVIAYT--LSWVVTLFL 200
+++ + + E Y T + L+ + ++ + +V A S + + L
Sbjct: 131 ---ALNWLYSGMEEYTYITTRSVVFKILSLILIFLLVKRPEDYIVFASISLFSSLSSNIL 187
Query: 201 IVWD---YSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILGFVMTWTDTLMIGYYLTSR 257
+W + +K++ L F + F+ L ++ + T DT+M+G+ +
Sbjct: 188 NLWHSRHFINIKLYK-NLQFKYHFKPMWYLFASLLAVN-----IYTNLDTVMLGFINGNE 241
Query: 258 EVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQMTTKWTFLLTLPM 317
VG Y+ A+ + +L + S S + + S ++ ++ + ++ F + +P+
Sbjct: 242 AVGYYSVASKVKWILLSLITSISAVLLLRLSFYISKNDTSNFIKMLKESSAVIFFIAIPL 301
Query: 318 FLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLTLVI-IGESKLNMIG 376
+ ++ + +I + G +YL A++A+QIL + F + G ++I + K M+
Sbjct: 302 MVFFIVEAKDSILLLGGSQYLPATLAMQILMPILLISGFSNITGNQILIPMNREKYFMVA 361
Query: 377 DLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFWLYRKTGIHPFTKNYL--- 433
I A+ N++LN+ L+P +G+ GA+ AT + L + T F+K YL
Sbjct: 362 VTIGAVINLILNLLLMPKFGIIGASVATLFAE----------LSQMTVQLHFSKEYLVSN 411
Query: 434 ---KPLGIGVLLVGMIKAVHLNVGN-------IWYALILLGLILVVYSLLVLVVKSLDRE 483
K L + V++ ++ + L + N +Y+L+L G + L LV+ L +E
Sbjct: 412 ISIKSL-VNVIIATVVSIIPLIILNQLITITIPFYSLMLAGF---AFFSLYLVILLLLKE 467
Query: 484 DLELML 489
++ + L
Sbjct: 468 EVTIQL 473
>emb|CAB91648.1| (AJ249463) hypothetical membrane protein [Bacillus anthracis]
Length = 506
Score = 84.3 bits (205), Expect = 3e-15
Identities = 100/524 (19%), Positives = 214/524 (40%), Gaps = 69/524 (13%)
Query: 11 RIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTS 70
+ +G I+ T +S LG ++ + + G+F L + I+ ++ G P +
Sbjct: 4 KFVKGAAILTITTFLSKVLGSFFQIPLQNIAGDEVLGIFRLVFPVYMIALTLSVAGVPLA 63
Query: 71 LPREIPVYREKYPEK-VNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPLK 129
+ + I EK + + +L ++ ++ V ++ + + +GS A + PL
Sbjct: 64 ISKLIAELHEKNDQDGIAKLFTSASIIGVIFGVLGFSVIMIGSSMFANMLGGQDTRLPLI 123
Query: 130 VISLALPFYALTSMLVSISQGFG--------RVREKVYFTNITYPTLFLAFATLGVIFGK 181
V S AL ++ QGFG +V E+ F + + LA A L V + K
Sbjct: 124 VTSFALLIAPYMAVYRGYFQGFGDMIPTGVSQVIEQ--FIRVFF---MLAIAFLFVYWNK 178
Query: 182 SIKAV----VIAYTLSWVVTLFLIVWDYS----RVKIFTLELTFDLNIAKSLLTFSLPLL 233
V +I L + +L + Y R K T L + AK +L S+P+
Sbjct: 179 ESDVVAGGAMIGSCLGVITSLIYLRLKYVKSIYRYKSNTYSLQDFKDNAKKILQVSIPIA 238
Query: 234 LSGILGFVMTWTDTLMIGYYL------TSREVGIYNSATPLAKMLPIFLASFSYLYMPIS 287
+ + V+ D++ I + L + GIY+ +++ +F ++ + +P+
Sbjct: 239 IGALSMPVLNLVDSVTIPHMLHESTTTIQEQFGIYSRGFAFTQLIVVFASAMVFPLIPLL 298
Query: 288 SQLYAQGKVKEMGRVYQMTTKWTFLLTLPMFLMLV---------LFPQAT----ISFIFG 334
+ + + + + T +LT P+ + L+ LF A ++ + G
Sbjct: 299 TAALTKKDIALAKQTIERTNDLAHVLTTPITIWLMALTIPLNVGLFTDAKGSGMLAILIG 358
Query: 335 EKYLDASVALQILAIGFMFHTFLGLNG---LTLVIIGESKLNMIGDLIAALSNILLNIAL 391
Y +L +L+IG + G+N +++G A+ ++LNI L
Sbjct: 359 SSYF---TSLMVLSIGIL----QGINRSKQAAWIVVG-----------ASFVKVILNIVL 400
Query: 392 IPFYGVNGAAFATSVSYIVANFFRSFWLYRKTGIHPFTKNYLKPLGIGVLL-VGM----- 445
+ +G+ GAA++T + YI+ ++ ++ + +G+ ++ +G+
Sbjct: 401 VSQFGITGAAYSTLIIYIMICIVNYIYIRKELAYSIHMGRFFAVIGVSSIVGIGLYFTST 460
Query: 446 -IKAVHLNVGNIWYALILLGLILVVYSLLVLVVKSLDREDLELM 488
I V + I Y+ + + L +Y + L + + ++ + +
Sbjct: 461 FINVVDSRIITIIYSGLAFCVALFIYGICALKLNWISKKQIPFL 504
>sp|Q00758|SP5B_BACSU STAGE V SPORULATION PROTEIN B >gi|2127231|pir||I39989 spore cortex
synthesis protein spoVB - Bacillus subtilis
>gi|143655|gb|AAA22806.1| (M76666) sporulation protein
[Bacillus subtilis] >gi|2635232|emb|CAB14727.1| (Z99118)
alternate gene name: spoIIIF [Bacillus subtilis]
>gi|6977812|emb|CAB75337.1| (Y15896)
sporulation-specific protein [Bacillus subtilis]
Length = 518
Score = 82.7 bits (201), Expect = 9e-15
Identities = 107/505 (21%), Positives = 214/505 (42%), Gaps = 39/505 (7%)
Query: 14 RGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSLPR 73
+GT I+ A +++ LGF+ RV+IAR E G++ +A ++ + G P ++ +
Sbjct: 8 KGTLILIAAGMVTRMLGFVNRVVIARFIGEEGVGLYMMAAPTFFLATTLTQFGLPVAISK 67
Query: 74 EI--PVYREKYPEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPLKVI 131
+ R + + N L+ ++ + V + I FLF + + + + PL I
Sbjct: 68 LVAEASARGDHQKTKNILVMSLTITGVLSLIFTPLFLFFAPVMAETMLTDKRTLYPLLAI 127
Query: 132 SLALPFYALTSMLVSISQG--------FGRVREKVYFTNI--TYPTLFLAFATLGVIFGK 181
+ +P A++S+L QG +V E+V ++ T+FL + G
Sbjct: 128 TPVVPIIAISSVLRGYFQGKQNMNPLAMSQVLEQVVRISLVAVCTTIFLPYGIEYAAAGA 187
Query: 182 SIKAVVIAYTLSWVVTLFLIVWDYSRVKI---FTLELTFDLNIAKSLLTFSLPLLLSGIL 238
+ +V A L+ ++ LF+ +KI F + L++ SLP S +
Sbjct: 188 MLSSV--AGELASLLYLFVCFKYKKTIKIRKHFLQSIKNGKQTFTQLMSVSLPTTGSRFI 245
Query: 239 GFVMTWTDTLMIGYYLTSREVGI------YNSATPLAK---MLPIFLA-SFSYLYMPISS 288
G + + + +++ L V Y T A LP F+ S S +P S
Sbjct: 246 GNLSWFFEPIVVAQSLAIAGVATVAATKQYGELTGFAMTLLTLPSFITYSLSTALVPAIS 305
Query: 289 QLYAQGKVKEMGRVYQMTTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILA 348
+ Q K++ + + + L ++L +F + ++G A+V ++++A
Sbjct: 306 EGMEQKKLQVVEYRLEQAMRLCLLSGGISVVILFVFADELMRVMYGSS--GAAVFIKVMA 363
Query: 349 IGFMFHTFLGLNGLTLVIIGESKLNMIGDLIAAL--SNILLNIALIPFYGVNGAAFATSV 406
F+ + F G L + + M+ LI AL + ++ +A P G+ GAA A
Sbjct: 364 PFFLLYYFQGPLQAVLQALNLAGAAMMNSLIGALVKTGLIFVLATRPSLGIMGAALAIVT 423
Query: 407 SYIVANFFRSFWLYRKTGIHPFTKNYLKPLGIGVLLVGMIKAV---HLNVGNIWYALILL 463
++ + + + I K Y + +++ G I + +++ G A+ L
Sbjct: 424 GMVLVTLLHAATVSKVLPISIKIKEYALSFAV-IVICGFISSAIKQYISFG-ASEAVNLA 481
Query: 464 GLI---LVVYSLLVLVVKSLDREDL 485
G I +Y +L+LV + + +++L
Sbjct: 482 GWIAASAAIYMILLLVFRLIKKDEL 506
>pir||D72354 lipopolysaccharide biosynthesis protein - Thermotoga maritima
(strain MSB8) >gi|4981141|gb|AAD35705.1|AE001736_3
(AE001736) lipopolysaccharide biosynthesis protein
[Thermotoga maritima]
Length = 479
Score = 82.7 bits (201), Expect = 9e-15
Identities = 86/395 (21%), Positives = 166/395 (41%), Gaps = 21/395 (5%)
Query: 22 GTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSLPREIPVYREK 81
GT + F T + + ++G + T+ +I +VA LG P S R P +K
Sbjct: 18 GTWFRALISFFTTPITTWMINPEEFGKATMFSTVYSILLLVALLGTPNSFLRFFP---QK 74
Query: 82 YPEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPLKVISLALPFYALT 141
E+ L+ + ++ V SI+L +F+ +I F VI +A
Sbjct: 75 SEEEKPVLLWSSVMPPVLLSILLSLVVFIFRSSI-NTFLVGTPDSKAHVILIA------- 126
Query: 142 SMLVSISQGFGR--VREKVYFTNITYPTLFLAFATLGVIFGKSIKAVVIAYTLSWVVTLF 199
+++ I Q F VR K + + + + +G I ++ YTL + LF
Sbjct: 127 TLITGIFQTFNLNLVRSKGRAILFSAIQVIQSLSQMGFIVLYALLVSRDFYTLLYA-QLF 185
Query: 200 LIVWDYSRVKIFTLELTFDLNIAKSL----LTFSLPLLLSGILGFVMTWTDTLMIGYYLT 255
V + +F F + I K L + + P + SG+L +++ W D ++ Y +
Sbjct: 186 SNVVALAVGMLFERSYWFPVKIDKKLVFEVIKYGYPFVFSGLLLWLLNWIDRFVLRLYTS 245
Query: 256 SREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQMTTKWTFLLTL 315
++G+Y++A + + + FS L+ P + + Y + +M +++ + L
Sbjct: 246 FSDIGLYSAAFKIVSAMSLLTTGFSTLWYPFAYEQYEKNPEDKM--IFKRALDYMAFLVF 303
Query: 316 PMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLTLVIIGESKLNMI 375
+L+ F + I + Y A+ L + + T + + ++ ++
Sbjct: 304 SAGFLLLSF-KDVIFLLLARSYRPAAAISPFLILNPVMITMAIVVARGIDFSKKTYWFIV 362
Query: 376 GDLIAALSNILLNIALIPFYGVNGAAFATSVSYIV 410
D AAL N+ N L+P G GAA +T +S+I+
Sbjct: 363 SDGAAALFNLAGNFLLVPTLGAKGAAVSTGLSFII 397
>gb|AAG18688.1| (AE004973) Vng0050c [Halobacterium sp. NRC-1]
Length = 480
Score = 81.9 bits (199), Expect = 2e-14
Identities = 92/412 (22%), Positives = 168/412 (40%), Gaps = 32/412 (7%)
Query: 9 LARIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFP 68
+ R+ GI ++ + + +I + G++ TIL + + A+ G
Sbjct: 3 IRRLFSDAGISALRVIVLSIRSLLIISIITKLIGSGAQGIW---ATILALVGLFASAG-- 57
Query: 69 TSLPREIPVYREKYPEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPL 128
L + R +++ S + V + SI+ A ++ S AI V +
Sbjct: 58 -GLHMHGALIRYSPSSDASQVFSDTLTVTLMMSILTGAIFYILSGAILSVINPSGDISTT 116
Query: 129 KVISLALPFYALTSMLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIFGKSIKAVVI 188
+I A+ Y S+L S + R +V Y L +A I+ +V+
Sbjct: 117 LMIPAAV--YTGASLLSSFLSNYPRALRRVK----RYEALLIAL--------NGIEVIVL 162
Query: 189 AYTLS---------WVVTLFLIVWDYSRVKIFTLE-LTF-DLNIAKSLLTFSLPLLLSGI 237
A TL W + L I++D+ + +F+ + LT D++ L +++P++ +
Sbjct: 163 AVTLYLSESLLDGFWALALTHIIFDFVFLFVFSRDDLTIPDISTFPLYLRYAVPMVPKEL 222
Query: 238 LGFVMTWTDTLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVK 297
G +++ D ++I +L GIY + ++ L F+ P + + +
Sbjct: 223 SGTLLSHADKILIIRFLGPSAAGIYTVSYTISSFLQKLAGIFNSTLYPNVTAAWENEEFD 282
Query: 298 EMGRVYQMTTKWTFLLTLPMFLMLVLFPQATISFIFG-EKYLDASVALQILAIGFMFHTF 356
E+ R Y + L LP L A + FI E ++ + ILA+GF F
Sbjct: 283 ELSRFYSNFLRGYVLFALPAIGGLSFLSVAILRFISTPEIAVNGEWIVPILAVGFAFQGA 342
Query: 357 LGLNGLTLVIIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSY 408
G L E+ I A + N+ LN+ L+P G+ GAA AT+VS+
Sbjct: 343 EGFLSYPLQAAEETTRLSIITFFAVILNLCLNLVLLPIIGLEGAAVATTVSF 394
>gb|AAC38752.1| (AF030373) repeat unit transporter [Streptococcus pneumoniae]
Length = 461
Score = 80.0 bits (194), Expect = 6e-14
Identities = 103/476 (21%), Positives = 203/476 (42%), Gaps = 36/476 (7%)
Query: 12 IARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSL 71
+A+ TGI S L F+ + R + ++YG ++L T + + + TL ++
Sbjct: 7 LAKNTGIFALANFSSKILIFLLVPIYTRVLTTTEYGFYDLVYTTIQLFVPILTLNISEAV 66
Query: 72 PREIPVYREKYPEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPLKV- 130
R + K + S +L + SI L + + +F L+ +
Sbjct: 67 MR----FLMKDGVSKKSVFSIAVLDIFIGSIAFALLLLVNN-----LFSLSDLISQYSIY 117
Query: 131 ISLALPFYALTSMLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIFGKSIKAVVIAY 190
I + FY L + L+ S+G ++ I+ + L V+F + IA
Sbjct: 118 IFVIFVFYTLNNFLIQFSKGIDKIGVTAISGVISTAVMLAMNVILLVLFDWGLLGFFIAN 177
Query: 191 TLSWVVTLFLIVWDYSRVKIFTL-ELTFDLNIAKSLLTFSLPLLLSGILGFVMTWTDTLM 249
+V+ IV S+++++ L E+ D + ++ ++LPL+L+ +++W
Sbjct: 178 VCGYVIPCIYIV---SKLRLWELFEIKIDKKLQWEMVYYALPLVLN-----ILSWWVNNT 229
Query: 250 IGYYLTSREVGIYNSA-TPLAKMLPIFLASFSYLYMPI--SSQLYAQGKVKEMGRVYQMT 306
Y+ + VGI SA +A +P L++ S +++ S + Q + V M
Sbjct: 230 SNRYIVTAIVGIQASAIISVAYKIPQILSTISAIFIQSWQISAIKIQEDKSDTTFVSNML 289
Query: 307 TKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLTLVI 366
+ LL L + ++LF + + +FG + A + L I +F+ G G +
Sbjct: 290 LYYNALL-LIIASGIILFVKPISNILFGISFYSAWELVPFLIISSLFNAISGCIGAIMGA 348
Query: 367 IGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFWLYRKTGIH 426
++ L+ ++NI+LNI L G G ++S ++A+F + RK +
Sbjct: 349 KMDTHNIAKSALVGMIANIILNIVLTFLMGPQG----ITISTLIASFL--IFYMRKDSVK 402
Query: 427 PFTKNYLKPLGIGVLLVGMIKAVHLNVGNIWYALILLGLILVVYSLLVL--VVKSL 480
+ + + +L+ ++KA L I+ I+ LI +V +L +L V+K L
Sbjct: 403 EINSETYRAIYLSWILL-VVKACLL----IYMDFIIGALIAMVINLFLLKDVIKPL 453
>gb|AAC69533.1| (AF057294) Cps23fJ [Streptococcus pneumoniae]
Length = 461
Score = 79.6 bits (193), Expect = 8e-14
Identities = 103/476 (21%), Positives = 203/476 (42%), Gaps = 36/476 (7%)
Query: 12 IARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSL 71
+A+ TGI S L F+ + R + ++YG ++L T + + + TL ++
Sbjct: 7 LAKNTGIFALANFSSKILIFLLVPIYTRVLTTTEYGFYDLVYTTIQLFVPILTLNISEAV 66
Query: 72 PREIPVYREKYPEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPLKV- 130
R + K + S +L + SI L + + +F L+ +
Sbjct: 67 MR----FLMKDGVSKKSVFSIAVLDIFIGSIAFALLLLVNN-----LFSLSDLISQYSIY 117
Query: 131 ISLALPFYALTSMLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIFGKSIKAVVIAY 190
I + FY L + L+ S+G ++ I+ + L V+F + IA
Sbjct: 118 IFVIFVFYTLNNFLIQFSKGIDKIGVTAISGVISTAVMLAMNVILLVVFDWGLLGFFIAN 177
Query: 191 TLSWVVTLFLIVWDYSRVKIFTL-ELTFDLNIAKSLLTFSLPLLLSGILGFVMTWTDTLM 249
+V+ IV SR++++ L E+ D + ++ ++LPL+L+ +++W
Sbjct: 178 VCGYVIPCIYIV---SRLRLWELFEIKIDKKLQWEMVYYALPLVLN-----ILSWWVNNT 229
Query: 250 IGYYLTSREVGIYNSA-TPLAKMLPIFLASFSYLYMPI--SSQLYAQGKVKEMGRVYQMT 306
Y+ + VGI SA +A +P L++ S +++ S + Q + V M
Sbjct: 230 SDRYIVTAIVGIQASAIISVAYKIPQILSTISAIFIQSWQISAIKIQEDKSDTTFVSNML 289
Query: 307 TKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLTLVI 366
+ LL L + ++LF + + +FG + A + L I +F+ G G +
Sbjct: 290 LYYNALL-LIIASGIILFVKPISNILFGISFYSAWELVPFLIISSLFNAISGCIGAIMGA 348
Query: 367 IGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFWLYRKTGIH 426
++ L+ ++NI+LNI L G G ++S ++A+F + RK +
Sbjct: 349 KMDTHNIAKSALVGMIANIILNIVLTFLMGPQG----ITISTLIASFL--IFYMRKDSVK 402
Query: 427 PFTKNYLKPLGIGVLLVGMIKAVHLNVGNIWYALILLGLILVVYSLLVL--VVKSL 480
+ + + +L+ +++A L I+ I+ LI +V +L +L V+K L
Sbjct: 403 EINSETYRAIYLSWILL-VVEACLL----IYMDFIIGALIAMVINLFLLKDVIKPL 453
>pir||D75095 probable polysaccharide biosynthesis protein PAB0766 - Pyrococcus
abyssi (strain Orsay) >gi|5458577|emb|CAB50065.1|
(AJ248286) polysaccharide biosynthesis protein, putative
[Pyrococcus abyssi]
Length = 411
Score = 79.6 bits (193), Expect = 8e-14
Identities = 91/408 (22%), Positives = 175/408 (42%), Gaps = 18/408 (4%)
Query: 10 ARIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPT 69
AR+ + G +F +IS L + V+++R G ++ + + I + LG
Sbjct: 7 ARLIKNAGWLFGAEVISKLLAYGVIVILSRTLGPEGLGQYSFIFYYIGLLGIFSDLGVGY 66
Query: 70 SLPREIPVYREKYPEKVNRLIS-TVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPL 128
RE+ + K E + ++ ++L ++ +++ LFL ++ E +
Sbjct: 67 YFMREVARDKGKAKELLPDVLGFKIVLALLNFLVVVTLTLFLPKPGWMKILIILAGAEGM 126
Query: 129 KVISLALPFYALTSMLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIFGKSIKAVVI 188
L + + V+ + RV E+ + + L+ A+ +L I +++
Sbjct: 127 LTWIAYLFVRIMYAHEVTKYEAIARVIERTWAFFVGGAVLY-AYRSLTPF----ILVILL 181
Query: 189 AYTLSWVVTLFLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILGFVMTWTDTL 248
YTL ++ I W + T+++ F + SLL S P L G+ + TD +
Sbjct: 182 GYTLREILR---IKWGSQFLN--TVKIRFKPGVWVSLLKESYPFWLIGLFTLIYYRTDMV 236
Query: 249 MIGYYLTSREVGIYNSATPLAKM---LPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQM 305
M+ E GIY +A L ++ +P + S + MP ++L+ + + K + +++
Sbjct: 237 MLSLMRGDYETGIYRAAYTLIEVSLFVPNIVVSTT---MPSMARLWVEDR-KTLNLLFRK 292
Query: 306 TTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLTLV 365
+ + + + + + I+ +FGEK+L + L+ILA F L G +
Sbjct: 293 SFQMLLGIGILGVAGYYVLARLGITIVFGEKFLPSVPVLRILAFAIPFMFLNSLFGSFMN 352
Query: 366 IIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANF 413
G AL N++LN LI +YG +GAA AT VS + F
Sbjct: 353 ATGRELTFTKITSFTALLNVVLNYILIRYYGASGAAVATVVSQVFLLF 400
>dbj|BAB06996.1| (AP001518) spore cortex protein [Bacillus halodurans]
Length = 539
Score = 79.2 bits (192), Expect = 1e-13
Identities = 110/525 (20%), Positives = 215/525 (40%), Gaps = 60/525 (11%)
Query: 10 ARIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPT 69
+++ RGT ++ A TLIS LGFI + + ++ + I +AT+G P
Sbjct: 4 SKLVRGTMVLTAATLISKILGFIYVIPFTALVGTTGLALYQFGYSQYVILLSLATMGVPL 63
Query: 70 SLPREIPVYREKYP-EKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFK-------E 121
++ + + Y+ E RL + ++++ T + LF + +A V +
Sbjct: 64 AVSKFVAKYQSLGDYETGYRLFRSGVVLMTITGTLSFLALFFAAPFLANVMNPGEEDLTQ 123
Query: 122 PKLVEPLKVISLALPFYALTSMLVSISQGF--------GRVREKVYFTNITYPTLFLAFA 173
+++ ++++S+AL S++ QG+ +V E++ I + L AF
Sbjct: 124 AEVILSIRMVSVALIVVPAMSIIRGYFQGYQSMGPTAVSQVVEQI--VRIVF-ILGAAFT 180
Query: 174 TLGVIFGKSIKAVVIAYTLSWV-----VTLFLIVWDYSR------VKIFTLELTFDL-NI 221
L V+ G AV A ++V + + W R V+ T+ L ++
Sbjct: 181 VLNVLNGDMATAVGFATFAAFVGAIGGLAVLAYYWFKRRKGILEQVEKSTVRHNLTLKDM 240
Query: 222 AKSLLTFSLPLLLSGILGFVMTWTDTLMIGYYLTSRE--------VGIYNSATPLAKMLP 273
K L+ ++LPL G+ + + DT I L E +G+ A ++P
Sbjct: 241 YKELILYALPLSFVGLAIPLFQFVDTYTIKGALIGTEFESISTDFIGVLTQAVHKVVLIP 300
Query: 274 IFLA-SFSYLYMPISSQLYAQGKVKEMGRVYQMTTKWTFLLTLPMFL-MLVLFPQATISF 331
+ LA + S +P ++ + G +K++ + T + + +P + M VL +
Sbjct: 301 MALATALSVTLIPTITRSFTDGDMKKLKQQTTQTFQIILFIAIPAAVGMAVLAYPIYGAL 360
Query: 332 IFGEKYLDASVALQILAIGFMFHTFLGLNGLTLVIIGESKLNMIGDLIAALSNILLNIAL 391
F L +V I F F ++ L I ++ +I ++ L ++ N+
Sbjct: 361 YFENLELGGNVMRYYGPITLCFSLF-AVSAALLQGINRQRMAVIALIVGLLIKLVTNVPF 419
Query: 392 IPFYGVNGAAFATSVSYIVANFFRSFWLYRKTGIHPFTKNYLKPLGIGVLLVGMIKAVHL 451
+ ++G NG F++ + +VA + W K G F + L I V
Sbjct: 420 LHWFGPNGVIFSSYLGNVVA-IGINIWAIAKYGQFDFRLVAKRTLLITV----------- 467
Query: 452 NVGNIWYALILLGLILVVYSLLVLVVKSLDREDLELMLEIEKKLG 496
+ALI+ G + +V LL V+ + R D ++ + +G
Sbjct: 468 ------FALIMGGAVYIVTHLLSYVINATSRGDYFILTFVGVTVG 506
>gb|AAC60766.1| (U46859) Wzx [Yersinia enterocolitica (type 0:8)]
Length = 429
Score = 78.0 bits (189), Expect = 2e-13
Identities = 95/414 (22%), Positives = 181/414 (42%), Gaps = 29/414 (7%)
Query: 5 VTQALARIARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVAT 64
+ ++L + R +G + + S +G +L+A++ ++YG A+T +T ++
Sbjct: 11 LNKSLNKALRNSGWLIFDKIASLTIGLWVGILLAKYLGPANYGQIVYAVTYVTFFQTISI 70
Query: 65 LGFPTSLPREIPVYREKYPEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKL 124
LG + + R++ EK + +IST+ A ++ M L + + +L
Sbjct: 71 LGLDSIVVRDL----SNGVEKCSAIISTIF---TARFLMSMVCLIIAISLAYNSRPDKRL 123
Query: 125 VEPLKVISLALPFYALTSMLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIF----- 179
+ L +ISL + F ++ S+ + Q + R + I+Y +F A + +I+
Sbjct: 124 I--LSIISLNILF-SVGSVFDYLVQSQSKSRLTICAKLISY--IFCAHVKIFMIYLHVEL 178
Query: 180 -GKSIKAVVIAYTLSWVVTLFLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGIL 238
SI +VI L + FL+ +YS +K+ L+ + KS L S PL+LS
Sbjct: 179 INFSI-IIVIEVLLYSSILYFLMNKNYSEIKV---SLSINSVYLKSALKESWPLMLSAFS 234
Query: 239 GFVMTWTDTLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKE 298
+ ++ L I + L VGIY+ LA++ F A ++PI ++L K K
Sbjct: 235 VVIFMKSNILFIQHMLGDNYVGIYSVGANLAELTYFFPAIIVTSFLPILAKL----KEKN 290
Query: 299 MGRVYQMTTKWTFLLTLPMFLMLVLF---PQATISFIFGEKYLDASVALQILAIGFMFHT 355
+ + + F + ++++F I +I+G K+ + I I +
Sbjct: 291 ISEYHLFFHRLMFFMWWGSIFIVIVFGGIGYFLIPYIYGIKFEQSKYIFIIHVITLIPVC 350
Query: 356 FLGLNGLTLVIIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYI 409
+ ++ SK+ ++ L A I LN LI G+ GA AT +S +
Sbjct: 351 VANAQYIWIINERRSKMFLVQTLTCAFLAITLNYFLIRKLGLIGAPVATLISQL 404
>pir||F82566 GumJ protein XF2362 [imported] - Xylella fastidiosa (strain 9a5c)
>gi|9107538|gb|AAF85161.1|AE004046_4 (AE004046) GumJ
protein [Xylella fastidiosa]
Length = 510
Score = 76.9 bits (186), Expect = 5e-13
Identities = 118/530 (22%), Positives = 221/530 (41%), Gaps = 51/530 (9%)
Query: 1 MSSEVTQALARIARGTGIIFAGTLISTFLG--------FITRVLIARHFSESDYGVFNLA 52
MS V A R G + T LG F VL+AR + DYG+ +
Sbjct: 1 MSDSVVSVSAVSERSLASRALGGAVVTMLGQGARVVIQFSIIVLLARLLNPHDYGLMAMV 60
Query: 53 LTILTISFIVATLGFPTSL--PREIPVYREKYPEKVNRLISTVILVVVATSIILMAFLFL 110
I+ ++ I+ G ++ ++I + +N +I + +VV F+
Sbjct: 61 TAIVGVADILRDFGLSSAAIQAKQITNAQRDNLFWINSVIGLALSLVV----------FV 110
Query: 111 GSQAIAEVFKEPKLVEPLKVISLALPFYALTSMLVSISQGFGRVRE--KVYFTNITYPTL 168
+Q IA+ ++EP LV +V+++ + L M R ++ ++I L
Sbjct: 111 AAQLIADFYREPALVTITQVLAIN---FLLNGMATQYRANLSREMRFGQLALSDIGAQVL 167
Query: 169 FLAFATLGVIFGKSIKAVVIAYTLSWVVTLFLIVWDYSRVKIFTLELTFDLNIAK-SLLT 227
L + G + A+V+ + V L + + V L + + S L+
Sbjct: 168 GLLVGVSVALVGWGVWALVLQQVVQAVANLVIAM-----VCARWLPGGYRRGVPMGSFLS 222
Query: 228 FSLPLLLSGILGFVMTWTDTLMIGYYLTSREVGIYNSATPLAKM-LPIFLASFSYLYMPI 286
F L+++ +L + ++IGY L +G+YN A L M L +A S + +P+
Sbjct: 223 FGWNLMVAQLLSYANRSVGQVIIGYRLGPNVLGLYNRAFQLLMMPLNQVIAPASSVALPV 282
Query: 287 SSQLYAQGKVKEMGRVYQMTTKW-TFLLTLPMFLMLVLFPQAT--ISFIFGEKYLDASVA 343
SQL + R + T +L + + L QAT I + GEK+ A +
Sbjct: 283 LSQLQ-----DDRARFDSFLLRGQTMMLHVIVALFAFSCAQATPLIVLVLGEKWRSAVLL 337
Query: 344 LQILAIGFMFHTFLGLNGLTLVIIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFA 403
QIL + M + + + G + +++ +++ + ++L + + ++GV G A
Sbjct: 338 FQILTLAGMTQSASYASYWLFLARGLIRDHLLFSIVSHVF-LVLCVCIGAYWGVFGVAIG 396
Query: 404 TSVSYIVANFFRSFWLYRKT---GIHPFTKNYLKPLGIGVL-LVGMIKAVHLNVGNIWYA 459
S+S + W R T G F +G GV M + + N+W
Sbjct: 397 YSISLALIWPLSIIWAARITPVPGWEMFFNGMRAIVGYGVCAFASMYASQWCDESNLWKQ 456
Query: 460 LILLGL-ILVVYSLLVLVVKSLDREDLELMLEIEKKLGLNLGILKNFLKR 508
LI+ L +LV +++L L+ + R+ L ++ K+G++ ++ +FL R
Sbjct: 457 LIVGALAMLVAFAVLSLLWSAFRRDVLSII-----KIGMSSSVVSSFLLR 501
>gb|AAD10179.1| (AF026471) Cps2J [Streptococcus pneumoniae]
Length = 469
Score = 76.1 bits (184), Expect = 9e-13
Identities = 111/501 (22%), Positives = 214/501 (42%), Gaps = 46/501 (9%)
Query: 12 IARGTGIIFAGTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSL 71
+ + G++ S L F+ L S SDYG ++L T TIS ++ + S
Sbjct: 8 LLKNIGLLTLSNFGSKILVFLMVPLYTSVLSTSDYGTYDLFNT--TISLLIPIISINISE 65
Query: 72 PREIPVYREKYPEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPL-KV 130
V R EK + + I+ + +II+ FL + + +F + PL K
Sbjct: 66 G----VLRFALDEKND----SSIVYSIGWNIIIKGFLVV---VLGIIFNNIFNIFPLLKE 114
Query: 131 ISLALPFYALTSMLVSISQGFGRVREKVYFTNITYPTLFLAFATLGVIFGKSIKAVVIAY 190
S+ L++++ F R +KV +I ++ ++F I ++ Y
Sbjct: 115 NSITFLLLYLSTIVYQFLSSFIRGIDKVSILSIAAILNTISILGFNILFLIIIPLGLVGY 174
Query: 191 TLSWVVTLFL----IVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILGFVMTWTD 246
S ++ L L +++ S+ I L + + + L+++S+PL+L+ + ++ D
Sbjct: 175 FWSNILGLVLPSLYLIYKISQYNIKYTSLQ-NKKLQQRLVSYSIPLILNSLGWWINNAID 233
Query: 247 TLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQMT 306
++ + GIY+ + +L IF F+ ++ S + Y + Q+
Sbjct: 234 RYVVIAFCGVAVNGIYSVGYKIPSILNIFANIFNQAWILSSVKSYRDEDSEYF--FSQVY 291
Query: 307 TKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLTLVI 366
K+ ++ L L L+ + F++ ++ DA + L I +F G G
Sbjct: 292 NKYNMIMVLISGL-LISCSKILAKFLYMNEFYDAWKFVPFLLIANVFGAISGFAGGIFSA 350
Query: 367 IGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFWLYRKTGIH 426
+ +SK+ L+ A+ NI+ + +YG GAA AT +SY V W+ R +H
Sbjct: 351 VKDSKIYSQSTLVGAIVNIIFTFVFVYYYGAIGAAIATMISYFVV------WIIR---VH 401
Query: 427 PFTKNYLKPLGIGVLLVGMIKAVHLNVGNIWYALIL-LGLILVVYSLLVLVVKSLDREDL 485
K Y+K L + + + V V I+ +++L L ++Y + V++ L
Sbjct: 402 TMRK-YIK------LKIFIRRDVFSYVLLIFQSIVLWLENSYILYPIQVVLF-------L 447
Query: 486 ELMLEIEKKLGLNLGILKNFL 506
L++ K++ +G LK FL
Sbjct: 448 LLVMLFYKEIKSIIGELKKFL 468
>sp|P77377|WZXC_ECOLI LIPOPOLYSACCHARIDE BIOSYNTHESIS PROTEIN WZXC
>gi|7429515|pir||E64970 hypothetical protein b2046 -
Escherichia coli (strain K-12)
>gi|1407619|gb|AAC77849.1| (U38473) putative export
protein [Escherichia coli] >gi|1736748|dbj|BAA15899.1|
(D90842) Succinoglycan biosynthesis transport protein
ExoT. [Escherichia coli] >gi|1736752|dbj|BAA15902.1|
(D90843) Succinoglycan biosynthesis transport protein
ExoT. [Escherichia coli] >gi|1788359|gb|AAC75107.1|
(AE000295) probable export protein [Escherichia coli
K12]
Length = 492
Score = 71.4 bits (172), Expect = 2e-11
Identities = 106/501 (21%), Positives = 201/501 (39%), Gaps = 64/501 (12%)
Query: 23 TLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSLPREIPVYREKY 82
T+I LG + ++AR +G+ ++L I+ ++ ++ G S+ +
Sbjct: 18 TVIIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDFGIANSIIQR-------- 69
Query: 83 PEKVNRL-ISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPLKVISLALPFYALT 141
++++ L ++T+ + V I++ +FL S I +V P L +K +SLA
Sbjct: 70 -KEISHLELTTLYWLNVGLGIVVCVAVFLLSDLIGDVLNNPDLAPLIKTLSLAF------ 122
Query: 142 SMLVSISQGFGRVREKVYFTN---ITYPTLFLAFATLGVI---FGKSIKAVVIAYTLSWV 195
+++ Q F + +K N + + LA T V+ F ++ Y ++
Sbjct: 123 -VVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTCTVVSAHFWPLAMTAILGYLVNSA 181
Query: 196 VTLFLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILGFVMTWTDTLMIGYYLT 255
V L + Y KI+ L F L L F L I+ ++ T TL++ L
Sbjct: 182 VRTLL--FGYFGRKIYRPGLHFSLASVAPNLRFGAWLTADSIINYLNTNLSTLVLARILG 239
Query: 256 SREVGIYNSATPLAKMLPIFL-ASFSYLYMPISSQLYAQGKVKEMGRVYQMTTKWTFLLT 314
+ G YN A +A + P+ L + + P +++ Q +++ + ++
Sbjct: 240 AGVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKI--QDDTEKLRVNFYKLLSVVGIIN 297
Query: 315 LPMFLMLVLFPQATISFIFGEKYLDASVALQILA-----------------------IGF 351
P L L++ + +FGEK+ LQ+L I F
Sbjct: 298 FPALLGLMVVSNNFVPLVFGEKWNSIIPVLQLLCVVGLLRSVGNPIGSLLMAKARVDISF 357
Query: 352 MFHTFLGLNGLTLVIIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVA 411
F+ F + ++IG IG + L ++N L F + ++ YI+
Sbjct: 358 KFNVFKTFLFIPAIVIGGQMAGAIGVTLGFLLVQIINTILSYFVMIKPVLGSSYRQYIL- 416
Query: 412 NFFRSFWLYRKTGIHPFTKNYLKPLGI---GVLLVGMIKAVHLNVGNIWYALILLGLILV 468
S WL + +Y LGI G L +GM+ AV + G + + ++ ++L
Sbjct: 417 ----SLWLPFYLSLPTLVVSY--ALGIVLKGQLALGMLLAVQIATGVLAFVVM---IVLS 467
Query: 469 VYSLLVLVVKSLDREDLELML 489
+ L+V V + R + ML
Sbjct: 468 RHPLVVEVKRQFCRSEKMKML 488
>pir||T44650 capsular polysaccharide repeat unit transporter cpsM [imported] -
Streptococcus agalactiae >gi|3721922|dbj|BAA33752.1|
(AB017355) capsular polysaccharide [Streptococcus
agalactiae] >gi|5381189|dbj|BAA82286.1| (AB028896)
CpsIaL [Streptococcus agalactiae]
>gi|5823219|gb|AAD53073.1|AF163833_13 (AF163833) CpsM
[Streptococcus agalactiae]
Length = 466
Score = 71.4 bits (172), Expect = 2e-11
Identities = 107/480 (22%), Positives = 203/480 (42%), Gaps = 60/480 (12%)
Query: 16 TGIIFA-GTLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSLPRE 74
+G I+ G L+ L FIT + R S YG ++L + + I I+ +G TS
Sbjct: 9 SGFIYTLGNLLVQGLAFITLPIYTRVISTEVYGQYSLYVAWMNI--IMLFIGLQTS--GS 64
Query: 75 IPVYREKYPEKVNRLISTVILV--VVATSIILMAFLFLGSQAIAEVFKEP--KLVEPLKV 130
+ R KY E+ + V + I+L+AFLF A F E L+
Sbjct: 65 LSSARVKYGEEFKSYSGSAFSVGNIWFLIILLIAFLFRSFLAPLVGFSESIFLLMVCQSY 124
Query: 131 ISLALPFY---------ALTSMLVSISQGFGRVREKVYFTNITYPTLFLAFAT----LGV 177
S + F+ +L ++++S++ V +LFL F L
Sbjct: 125 ASYVVTFFGQYFIQQQRSLANLILSLANAVSSVAL----------SLFLIFHWSDDFLSR 174
Query: 178 IFGKSIKAVVIAYTLSWVVTLFLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGI 237
+FG + ++ + F ++ +S+ ++ + ++T S+PL+ +
Sbjct: 175 VFGAFVPTIITG------IVAFAYIYYHSKS-------FYNPKYFRFIVTVSVPLIFHLL 221
Query: 238 LGFVMTWTDTLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVK 297
++ D +M+ ++EV +Y+ L ++ I L S + ++P +
Sbjct: 222 GHQLLGQLDRIMLARLYNTKEVAMYSFGYSLGMIIQIVLNSINMAWIPWFFDARKE---- 277
Query: 298 EMGRVYQMTTKWTFLLTLPMFLML---VLFPQATISFIFGEKYLDASVALQILAIGFMFH 354
++ Q++T + L L +FL L +FP+ + G+KY + + ++ + + F
Sbjct: 278 ---KLLQLSTYISRYLYLGVFLTLGYLTVFPELA-QIMGGDKYSSSVQFISLIIVSY-FL 332
Query: 355 TFLGLNGLTLVII-GESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANF 413
FL + + + IG L+AA N LLN+ LIP Y GAA AT +SY+
Sbjct: 333 VFLYTFPVNIQFFYANTTWIPIGTLLAAGVNWLLNLVLIPHYAAYGAAMATIISYLALLI 392
Query: 414 FRSFWLYRKTGIHPFTKNYLKPLGIGVLLVGMIKAVHLNVGNIWYALILLGLILVVYSLL 473
F + K H + + + + ++ +++ + NI L +IL+VYS++
Sbjct: 393 FHH--IVSKVKYHYSDVSVRQYIILSGIVFSYAMLMNMFLDNIVIRWSLGIIILIVYSIV 450
>gb|AAG24819.1| (AF285085) flippase [Salmonella typhimurium]
Length = 492
Score = 71.0 bits (171), Expect = 3e-11
Identities = 106/507 (20%), Positives = 203/507 (39%), Gaps = 79/507 (15%)
Query: 23 TLISTFLGFITRVLIARHFSESDYGVFNLALTILTISFIVATLGFPTSLPREIPVYREKY 82
T++ LG I ++AR +G+ ++L I+ ++ ++ G S+ + + +
Sbjct: 18 TIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLE- 76
Query: 83 PEKVNRLISTVILVVVATSIILMAFLFLGSQAIAEVFKEPKLVEPLKVISLALPFYALTS 142
++T+ + V I++ A +F S AIA V P L +K +SLA
Sbjct: 77 -------LTTLYWLNVGLGIVVFAVVFWLSDAIAHVLHNPDLAPLIKTLSLAF------- 122
Query: 143 MLVSISQGFGRVREKVYFTN---ITYPTLFLAFATLGVI---FGKSIKAVVIAYTLSWVV 196
+++ Q F + +K N + T LA T VI + ++ Y ++ V
Sbjct: 123 IVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTVISAHYWPLALTAILGYLVNSAV 182
Query: 197 TLFLIVWDYSRVKIFTLELTFDLNIAKSLLTFSLPLLLSGILGFVMTWTDTLMIGYYLTS 256
L + Y KI+ L F L + L F L I+ ++ T TL++ L +
Sbjct: 183 RTLL--FGYFGRKIYRPGLHFSLASVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGA 240
Query: 257 REVGIYNSA-----TPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQMTTKWTF 311
G YN A P AK+ PI + + P +++ Q +++ +
Sbjct: 241 SVAGGYNLAYNVAVVPPAKLNPI----ITRVLFPAFAKI--QDDTEKLRVNFYKLLSVVG 294
Query: 312 LLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILA----------------------- 348
++ P L L++ + +FGEK+ LQ+L
Sbjct: 295 IINFPALLGLMVVANNFVPLVFGEKWNSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVD 354
Query: 349 IGFMFHTFLGLNGLTLVIIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSY 408
I F F+ F + ++IG IG + L ++N L F + ++ Y
Sbjct: 355 ISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQIINTILSYFVMIKPVLGSSYRQY 414
Query: 409 IVANFFRSFWLYRKTGIHPFTKNYLKPLGIGVLLVGMIKAVHLNVGNIWYALILLGLILV 468
I+ S WL + F +Y G G L+ G +L + ++ +++G++
Sbjct: 415 IL-----SLWLPFYLSLPTFITSY----GAGKLVDG-----YLPLSGVFALQVMVGIL-- 458
Query: 469 VYSLLVLVVKSLDREDLELMLEIEKKL 495
S +++++ S + L++EI+ +L
Sbjct: 459 --SFILMIIFSRN----ALVMEIKNQL 479
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.329 0.144 0.415
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165156262
Number of Sequences: 2977
Number of extensions: 6599759
Number of successful extensions: 29565
Number of sequences better than 1.0e-10: 38
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 29475
Number of HSP's gapped (non-prelim): 46
length of query: 511
length of database: 189,106,746
effective HSP length: 55
effective length of query: 456
effective length of database: 156,189,961
effective search space: 71222622216
effective search space used: 71222622216
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 167 (69.5 bits)