BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0786 (PAB0786) DE:Hypothetical protein
         (133 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75098 hypothetical protein PAB0786 - Pyrococcus abyssi (st...   265  2e-70
gi|11497915 A. fulgidus predicted coding region AF0300 [Archaeog...    71  5e-12

>pir||D75098 hypothetical protein PAB0786 - Pyrococcus abyssi (strain Orsay)
           >gi|5458601|emb|CAB50089.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 133
           
 Score =  265 bits (669), Expect = 2e-70
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MYLVDTNVFLEIFLNQEKANEAEEFLTKTPTEYSHISDFSLYSIGIILSRQKKYAVFSDF 60
           MYLVDTNVFLEIFLNQEKANEAEEFLTKTPTEYSHISDFSLYSIGIILSRQKKYAVFSDF
Sbjct: 1   MYLVDTNVFLEIFLNQEKANEAEEFLTKTPTEYSHISDFSLYSIGIILSRQKKYAVFSDF 60

Query: 61  VEDVLLEGGVTLLRLSPFDLGSVINAAERFNLDFDDAYQYTLARKYNLKIVSFDSDFDKT 120
           VEDVLLEGGVTLLRLSPFDLGSVINAAERFNLDFDDAYQYTLARKYNLKIVSFDSDFDKT
Sbjct: 61  VEDVLLEGGVTLLRLSPFDLGSVINAAERFNLDFDDAYQYTLARKYNLKIVSFDSDFDKT 120

Query: 121 DIGRLLPAQALRR 133
           DIGRLLPAQALRR
Sbjct: 121 DIGRLLPAQALRR 133


>gi|11497915 A. fulgidus predicted coding region AF0300 [Archaeoglobus fulgidus]
           >gi|7483402|pir||D69287 hypothetical protein AF0300 -
           Archaeoglobus fulgidus >gi|2650343|gb|AAB90942.1|
           (AE001084) A. fulgidus predicted coding region AF0300
           [Archaeoglobus fulgidus]
           Length = 50
           
 Score = 71.0 bits (171), Expect = 5e-12
 Identities = 30/45 (66%), Positives = 39/45 (86%)

Query: 87  AERFNLDFDDAYQYTLARKYNLKIVSFDSDFDKTDIGRLLPAQAL 131
           ++++ LDFDDAYQY LA+KYNL+IVSF+SDFD+TD GR LP Q +
Sbjct: 2   SKKYKLDFDDAYQYALAKKYNLEIVSFNSDFDRTDAGRALPEQVI 46


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.140    0.387 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46258375
Number of Sequences: 2977
Number of extensions: 1744376
Number of successful extensions: 3864
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3862
Number of HSP's gapped (non-prelim): 2
length of query: 133
length of database: 189,106,746
effective HSP length: 54
effective length of query: 79
effective length of database: 156,788,448
effective search space: 12386287392
effective search space used: 12386287392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)