BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0788 (PAB0788) DE:Hypothetical protein
(169 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75098 hypothetical protein PAB0788 - Pyrococcus abyssi (st... 338 2e-92
pir||F75125 hypothetical protein PAB0550 - Pyrococcus abyssi (st... 125 2e-28
gi|11497929 conserved hypothetical protein [Archaeoglobus fulgid... 102 2e-21
sp|Q58384|Y974_METJA HYPOTHETICAL PROTEIN MJ0974 >gi|2128611|pir... 90 2e-17
gi|11498691 conserved hypothetical protein [Archaeoglobus fulgid... 81 9e-15
gi|11497927 conserved hypothetical protein [Archaeoglobus fulgid... 68 5e-11
>pir||F75098 hypothetical protein PAB0788 - Pyrococcus abyssi (strain Orsay)
>gi|5458603|emb|CAB50091.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 169
Score = 338 bits (858), Expect = 2e-92
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MKLRLIFMTSGKFRFFIDSNVILNYFYGDDNAREIIEIAENAGEVFINGIVLTEVSIRYL 60
MKLRLIFMTSGKFRFFIDSNVILNYFYGDDNAREIIEIAENAGEVFINGIVLTEVSIRYL
Sbjct: 1 MKLRLIFMTSGKFRFFIDSNVILNYFYGDDNAREIIEIAENAGEVFINGIVLTEVSIRYL 60
Query: 61 KDETGEKSYTLKRKPELVKNVDKSPPYAVLGKFLYLSDNVLIGEDAVILMDIYGLLPNDA 120
KDETGEKSYTLKRKPELVKNVDKSPPYAVLGKFLYLSDNVLIGEDAVILMDIYGLLPNDA
Sbjct: 61 KDETGEKSYTLKRKPELVKNVDKSPPYAVLGKFLYLSDNVLIGEDAVILMDIYGLLPNDA 120
Query: 121 IILATCKFYGIKYLMSFDSDFREACKGEGIILIESKEKLDEIIKFGDSK 169
IILATCKFYGIKYLMSFDSDFREACKGEGIILIESKEKLDEIIKFGDSK
Sbjct: 121 IILATCKFYGIKYLMSFDSDFREACKGEGIILIESKEKLDEIIKFGDSK 169
>pir||F75125 hypothetical protein PAB0550 - Pyrococcus abyssi (strain Orsay)
>gi|5458230|emb|CAB49719.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 156
Score = 125 bits (312), Expect = 2e-28
Identities = 66/150 (44%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 15 FFIDSNVILNYFYGDDNAREIIEIAENAG-EVFINGIVLTEVSIRYLKDETGEKSYTLKR 73
F IDS +I+ + G+ AR+I+E+ ++ V+IN +V +EV YLK TG+ TLK+
Sbjct: 4 FMIDSTLIIEHLKGNPIARKILEVLIDSDVNVYINDVVASEVIFIYLKLTTGKSYLTLKK 63
Query: 74 KPELVKNVDKSPPYAVLGKFLYLSDNVLIGEDAVILMDIYGLLPNDAIILATCKFYGIKY 133
P +V++VDK+ Y +LG F +L N + A L+D YGLLPNDA+ILAT FY Y
Sbjct: 64 NPVIVRSVDKTSVYELLGMFKFLETNEFVFSIAKRLIDKYGLLPNDALILATAIFYRCDY 123
Query: 134 LMSFDSDFREACKGEGIILIESKEKLDEII 163
L++ DSD++E C+ E I LI +KE+L++ +
Sbjct: 124 LIALDSDYKEPCEAEKIRLISTKEELEKAL 153
>gi|11497929 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450186|pir||C69289 conserved hypothetical protein
AF0315 - Archaeoglobus fulgidus
>gi|2650321|gb|AAB90919.1| (AE001083) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 143
Score = 102 bits (253), Expect = 2e-21
Identities = 57/137 (41%), Positives = 87/137 (62%), Gaps = 6/137 (4%)
Query: 8 MTSGKFRFFIDSNVILNYFYGDDNAREIIEIAENAGEV--FINGIVLTEVSIRYLKDETG 65
MTSG F+D+N+++ + GD A+++I+ E GE+ +IN IV++EV Y++ T
Sbjct: 1 MTSG---VFVDTNILVRHLAGDQKAKKLIDQIE-IGEIRGYINQIVVSEVVFVYMRLLTK 56
Query: 66 EKSYTLKRKPELVKNVDKSPPYAVLGKFLYLSDNVLIGEDAVILMDIYGLLPNDAIILAT 125
+ TLKR E++ +D P Y +L F+ L + LI ++ +M YGLLPNDA+I AT
Sbjct: 57 LDAKTLKRNHEIICKIDLEPVYEILSIFVELQSSNLITVESRKIMSRYGLLPNDALIAAT 116
Query: 126 CKFYGIKYLMSFDSDFR 142
CK YGI+ + +FD DFR
Sbjct: 117 CKHYGIRKIATFDEDFR 133
>sp|Q58384|Y974_METJA HYPOTHETICAL PROTEIN MJ0974 >gi|2128611|pir||F64421 hypothetical
protein MJ0974 - Methanococcus jannaschii
>gi|1591637|gb|AAB98979.1| (U67540) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 149
Score = 89.7 bits (219), Expect = 2e-17
Identities = 49/131 (37%), Positives = 80/131 (60%), Gaps = 3/131 (2%)
Query: 14 RFFIDSNVILNYFYGDDNAREIIEIAENAGEV--FINGIVLTEVSIRYLKDETGEKSYTL 71
+ F DSN+++ + G A+++IE EN E+ FIN IV++EV Y++ T ++ Y +
Sbjct: 10 KIFFDSNILIYHLCGKVEAKKLIEKVENK-EICGFINPIVISEVLFFYIRATTNKRHYDI 68
Query: 72 KRKPELVKNVDKSPPYAVLGKFLYLSDNVLIGEDAVILMDIYGLLPNDAIILATCKFYGI 131
K+ PE++K++D + + F L N I + + ++ Y LLPNDA+I +TCKFY I
Sbjct: 69 KKHPEILKSLDLDIVFELFSIFQILDLNSEIVKISREIIKKYCLLPNDALICSTCKFYKI 128
Query: 132 KYLMSFDSDFR 142
+ SFD DF+
Sbjct: 129 NKICSFDDDFK 139
>gi|11498691 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450187|pir||B69386 conserved hypothetical protein
AF1091 - Archaeoglobus fulgidus
>gi|2649497|gb|AAB90151.1| (AE001028) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 139
Score = 80.8 bits (196), Expect = 9e-15
Identities = 54/131 (41%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 14 RFFIDSNVILNYFYGD-DNAREIIEIAENAG-EVFINGIVLTEVSIRYLKDETGEKSYTL 71
R F DSNV L++ D A E++E E+ E +N IV++EV YL+ +G K Y L
Sbjct: 2 RVFFDSNVFLHHLADTKDEATELLERVEDGTFEGIVNDIVVSEVIYGYLRATSGLKPYEL 61
Query: 72 KRKPELVKNVDKSPPYAVLGKFLYLSDNVLIGEDAVILMDIYGLLPNDAIILATCKFYGI 131
++K L ++D P + G F L N +G I Y LLPNDA+I ATCK YGI
Sbjct: 62 RKKI-LTIDMDLKPVEELFGLFELLPCNFGVGLTKFIKK--YKLLPNDALIAATCKHYGI 118
Query: 132 KYLMSFDSDFR 142
+ +FD DFR
Sbjct: 119 NKIATFDEDFR 129
>gi|11497927 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450183|pir||A69289 conserved hypothetical protein
AF0313 - Archaeoglobus fulgidus
>gi|2650322|gb|AAB90920.1| (AE001083) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 150
Score = 68.3 bits (164), Expect = 5e-11
Identities = 53/140 (37%), Positives = 74/140 (52%), Gaps = 12/140 (8%)
Query: 14 RFFIDSNVILNYFYGDDNAREIIEIAENAGEVFINGIVLTEVSIRYLKDETG-----EKS 68
+ F D++ + YF G++NAR I E +N E F + V+ E + +K EK
Sbjct: 2 KVFFDTSFFVEYFRGNENARRIYEELKNY-EYFTSLNVVEETTYILMKFTASDFVKLEKH 60
Query: 69 YTLKRKPELVKNV-DKSPPYAVLGKFLYLSDNVLI----GEDAVI-LMDIYGLLPNDAII 122
Y + +K + NV +KS A L L D I D V+ +M+ Y LLPNDA+I
Sbjct: 61 YEVIKKLKEDSNVYEKSLKNAKLFYSSILHDGFQILPLPSWDLVLEIMERYRLLPNDALI 120
Query: 123 LATCKFYGIKYLMSFDSDFR 142
ATCK YGIK + +FD DFR
Sbjct: 121 AATCKHYGIKKIATFDEDFR 140
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.144 0.406
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62956210
Number of Sequences: 2977
Number of extensions: 2613532
Number of successful extensions: 5743
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5734
Number of HSP's gapped (non-prelim): 6
length of query: 169
length of database: 189,106,746
effective HSP length: 53
effective length of query: 116
effective length of database: 157,386,935
effective search space: 18256884460
effective search space used: 18256884460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)