BLASTP 2.0.10 [Aug-26-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PAB0790 (PAB0790) DE:Hypothetical protein (287 letters) Database: ./suso.pep; /banques/blast2/nr.pep 598,487 sequences; 189,106,746 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||H75098 hypothetical protein PAB0790 - Pyrococcus abyssi (st... 574 e-163 pir||G75064 hypothetical protein PAB1002 - Pyrococcus abyssi (st... 108 6e-23 pir||C82942 conserved hypothetical UU038 [imported] - Ureaplasma... 82 8e-15 >pir||H75098 hypothetical protein PAB0790 - Pyrococcus abyssi (strain Orsay) >gi|5458605|emb|CAB50093.1| (AJ248286) hypothetical protein [Pyrococcus abyssi] Length = 287 Score = 574 bits (1464), Expect = e-163 Identities = 287/287 (100%), Positives = 287/287 (100%) Query: 1 MDVSDLIKKGESETIEFKRELNDSVYKTLSAFANTDGGILLLGVSNDGKVFGFSGDLDSL 60 MDVSDLIKKGESETIEFKRELNDSVYKTLSAFANTDGGILLLGVSNDGKVFGFSGDLDSL Sbjct: 1 MDVSDLIKKGESETIEFKRELNDSVYKTLSAFANTDGGILLLGVSNDGKVFGFSGDLDSL 60 Query: 61 ARSIRHNLRINPPIKVEEIGEKKVVIIDVSKSPVPISFKGRYYKRVGAQTVEMGWEDLQR 120 ARSIRHNLRINPPIKVEEIGEKKVVIIDVSKSPVPISFKGRYYKRVGAQTVEMGWEDLQR Sbjct: 61 ARSIRHNLRINPPIKVEEIGEKKVVIIDVSKSPVPISFKGRYYKRVGAQTVEMGWEDLQR 120 Query: 121 FFLQKSGVTWDSLPSSAALEDLDEETIRKFVHMARNRLPYINENEDVESILDKLGLLEDG 180 FFLQKSGVTWDSLPSSAALEDLDEETIRKFVHMARNRLPYINENEDVESILDKLGLLEDG Sbjct: 121 FFLQKSGVTWDSLPSSAALEDLDEETIRKFVHMARNRLPYINENEDVESILDKLGLLEDG 180 Query: 181 KITNAALLLFGKEPQRYYIQAKVRIGRFKDPITIIDDKEIGGNLFTQVEEVMKVIMSHIG 240 KITNAALLLFGKEPQRYYIQAKVRIGRFKDPITIIDDKEIGGNLFTQVEEVMKVIMSHIG Sbjct: 181 KITNAALLLFGKEPQRYYIQAKVRIGRFKDPITIIDDKEIGGNLFTQVEEVMKVIMSHIG 240 Query: 241 VRYEFEGELRRKEIWDYPLDALREAIINALIHRDYTDPSNVQIKIFR 287 VRYEFEGELRRKEIWDYPLDALREAIINALIHRDYTDPSNVQIKIFR Sbjct: 241 VRYEFEGELRRKEIWDYPLDALREAIINALIHRDYTDPSNVQIKIFR 287 >pir||G75064 hypothetical protein PAB1002 - Pyrococcus abyssi (strain Orsay) >gi|5458925|emb|CAB50412.1| (AJ248287) hypothetical protein [Pyrococcus abyssi] Length = 428 Score = 108 bits (268), Expect = 6e-23 Identities = 79/285 (27%), Positives = 136/285 (47%), Gaps = 10/285 (3%) Query: 6 LIKKGESETIEFKRELNDSVYKTLSAFANTDGGILLLGVSNDGKVFGFSGDLDSLARSIR 65 LI++GESE IEFK + ++K + A AN GG +++GV DGK+ G + ++ + + Sbjct: 9 LIREGESERIEFKSRVTKDIHKEICALANAYGGYIIIGVGKDGKLIGCNAK-EAREKISQ 67 Query: 66 HNLRINPPIKVE----EIGEKKVVIIDVSKSPVPISFKGRYYKRVGAQTVEMGWEDLQRF 121 L I PP++++ +I K+ ++I+V KS + G Y RVG + ++ Sbjct: 68 SLLSIIPPVRIKTHVIKIDNKEFLVIEVPKSNTLCTVGGVAYIRVGNSIRPLSIHEIIML 127 Query: 122 FLQKSGVTWDSLPSSAALEDLDEETIRKFVHMARNRLPYINENEDVESILDKLGLLEDGK 181 + +TWD +P + E I F ED L + ++ K Sbjct: 128 STELGALTWDEVPVE-PFNNAKREYIEWFFDAMEKARGRKIPKEDWNRYLRSIKAVKGDK 186 Query: 182 ITNAALLLFGKEPQRYYIQAKVRIGRFKDPITIIDDKEIGGNLFTQVEEVMKVIMSHIGV 241 +TNA +L F + ++ R +PI KE G ++ ++E+ + + Sbjct: 187 LTNAGVLFFTDVETMPHAGGRIIYMRGDEPIA---TKEFHGPIWKVIDEMFNELERNF-K 242 Query: 242 RYEFEGELRRKEIWDYPLDALREAIINALIHRDYTDPSNVQIKIF 286 E +R I +YP A+REAIINA HR+YT S+V++ ++ Sbjct: 243 WLEVTVGAKRVRIPEYPPRAVREAIINAFAHRNYTISSDVRVFVY 287 >pir||C82942 conserved hypothetical UU038 [imported] - Ureaplasma urealyticum >gi|6898985|gb|AAF30443.1|AE002103_8 (AE002103) conserved hypothetical [Ureaplasma urealyticum] Length = 463 Score = 81.9 bits (199), Expect = 8e-15 Identities = 80/287 (27%), Positives = 128/287 (43%), Gaps = 30/287 (10%) Query: 10 GESETIEFKRELND----SVYKTLSAFANTDGGILLLGVSNDGKVFG---FSGDLDSLAR 62 GE+ + K +L S K++ FAN GG L+ GV+ + V G + D + ++ Sbjct: 9 GETNFYDKKEKLEKKKIKSWLKSVCTFANGQGGKLIFGVNENNNVLGLENYLNDSEFISE 68 Query: 63 SIRHNLRINPP--IKVEEIGEKKVVIIDVSKSPVPISF-----KGRYYKRVGAQTVEMGW 115 +I+ + P I++ E K ++I+ + P F YKRVG Q+V Sbjct: 69 TIKTKIDNIPEFDIEINEYENKIILILTIFPGRNPPYFLVDNGSKTPYKRVGNQSVIASI 128 Query: 116 EDLQRFFLQKSGVTWDSLPSSAALEDLDEETIRKFVHMARNRLPYINENEDVESILDKLG 175 DL + L+ T+DSL S+ L+D+ M +N EN + L Sbjct: 129 NDLLNWCLRSQNRTYDSLVSNKLLKDVS-------FLMLKNEYQKHTENLWEDKFLKSFE 181 Query: 176 LLEDGKITNAALLLFGKEPQRYYIQAKVRIGRFKDP------ITIIDDKEIGGNLFTQVE 229 L+++ A LF Q Y Q+ V R+ I +DD E GNL + Sbjct: 182 LIDNNNYLTNAGALFADGYQVY--QSGVFCTRWNGKTKTNGLIEALDDAEFEGNLLFLLN 239 Query: 230 EVMKVIMSHIGVRYEFEGELRRKEIWDYPLDALREAIINALIHRDYT 276 + I + + +G L R + +YP+ A++E I+NALIHRDY+ Sbjct: 240 SSINFIKRNSKNMWR-KGVLYRIQYPEYPIKAVQEVIVNALIHRDYS 285 Database: ./suso.pep Posted date: Jul 6, 2001 5:57 PM Number of letters in database: 840,471 Number of sequences in database: 2977 Database: /banques/blast2/nr.pep Posted date: Dec 14, 2000 12:46 PM Number of letters in database: 188,266,275 Number of sequences in database: 595,510 Lambda K H 0.319 0.140 0.397 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105654210 Number of Sequences: 2977 Number of extensions: 4453867 Number of successful extensions: 12865 Number of sequences better than 1.0e-10: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 12860 Number of HSP's gapped (non-prelim): 3 length of query: 287 length of database: 189,106,746 effective HSP length: 56 effective length of query: 231 effective length of database: 155,591,474 effective search space: 35941630494 effective search space used: 35941630494 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 164 (68.3 bits)