BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0790 (PAB0790) DE:Hypothetical protein
(287 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75098 hypothetical protein PAB0790 - Pyrococcus abyssi (st... 574 e-163
pir||G75064 hypothetical protein PAB1002 - Pyrococcus abyssi (st... 108 6e-23
pir||C82942 conserved hypothetical UU038 [imported] - Ureaplasma... 82 8e-15
>pir||H75098 hypothetical protein PAB0790 - Pyrococcus abyssi (strain Orsay)
>gi|5458605|emb|CAB50093.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 287
Score = 574 bits (1464), Expect = e-163
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 1 MDVSDLIKKGESETIEFKRELNDSVYKTLSAFANTDGGILLLGVSNDGKVFGFSGDLDSL 60
MDVSDLIKKGESETIEFKRELNDSVYKTLSAFANTDGGILLLGVSNDGKVFGFSGDLDSL
Sbjct: 1 MDVSDLIKKGESETIEFKRELNDSVYKTLSAFANTDGGILLLGVSNDGKVFGFSGDLDSL 60
Query: 61 ARSIRHNLRINPPIKVEEIGEKKVVIIDVSKSPVPISFKGRYYKRVGAQTVEMGWEDLQR 120
ARSIRHNLRINPPIKVEEIGEKKVVIIDVSKSPVPISFKGRYYKRVGAQTVEMGWEDLQR
Sbjct: 61 ARSIRHNLRINPPIKVEEIGEKKVVIIDVSKSPVPISFKGRYYKRVGAQTVEMGWEDLQR 120
Query: 121 FFLQKSGVTWDSLPSSAALEDLDEETIRKFVHMARNRLPYINENEDVESILDKLGLLEDG 180
FFLQKSGVTWDSLPSSAALEDLDEETIRKFVHMARNRLPYINENEDVESILDKLGLLEDG
Sbjct: 121 FFLQKSGVTWDSLPSSAALEDLDEETIRKFVHMARNRLPYINENEDVESILDKLGLLEDG 180
Query: 181 KITNAALLLFGKEPQRYYIQAKVRIGRFKDPITIIDDKEIGGNLFTQVEEVMKVIMSHIG 240
KITNAALLLFGKEPQRYYIQAKVRIGRFKDPITIIDDKEIGGNLFTQVEEVMKVIMSHIG
Sbjct: 181 KITNAALLLFGKEPQRYYIQAKVRIGRFKDPITIIDDKEIGGNLFTQVEEVMKVIMSHIG 240
Query: 241 VRYEFEGELRRKEIWDYPLDALREAIINALIHRDYTDPSNVQIKIFR 287
VRYEFEGELRRKEIWDYPLDALREAIINALIHRDYTDPSNVQIKIFR
Sbjct: 241 VRYEFEGELRRKEIWDYPLDALREAIINALIHRDYTDPSNVQIKIFR 287
>pir||G75064 hypothetical protein PAB1002 - Pyrococcus abyssi (strain Orsay)
>gi|5458925|emb|CAB50412.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 428
Score = 108 bits (268), Expect = 6e-23
Identities = 79/285 (27%), Positives = 136/285 (47%), Gaps = 10/285 (3%)
Query: 6 LIKKGESETIEFKRELNDSVYKTLSAFANTDGGILLLGVSNDGKVFGFSGDLDSLARSIR 65
LI++GESE IEFK + ++K + A AN GG +++GV DGK+ G + ++ + +
Sbjct: 9 LIREGESERIEFKSRVTKDIHKEICALANAYGGYIIIGVGKDGKLIGCNAK-EAREKISQ 67
Query: 66 HNLRINPPIKVE----EIGEKKVVIIDVSKSPVPISFKGRYYKRVGAQTVEMGWEDLQRF 121
L I PP++++ +I K+ ++I+V KS + G Y RVG + ++
Sbjct: 68 SLLSIIPPVRIKTHVIKIDNKEFLVIEVPKSNTLCTVGGVAYIRVGNSIRPLSIHEIIML 127
Query: 122 FLQKSGVTWDSLPSSAALEDLDEETIRKFVHMARNRLPYINENEDVESILDKLGLLEDGK 181
+ +TWD +P + E I F ED L + ++ K
Sbjct: 128 STELGALTWDEVPVE-PFNNAKREYIEWFFDAMEKARGRKIPKEDWNRYLRSIKAVKGDK 186
Query: 182 ITNAALLLFGKEPQRYYIQAKVRIGRFKDPITIIDDKEIGGNLFTQVEEVMKVIMSHIGV 241
+TNA +L F + ++ R +PI KE G ++ ++E+ + +
Sbjct: 187 LTNAGVLFFTDVETMPHAGGRIIYMRGDEPIA---TKEFHGPIWKVIDEMFNELERNF-K 242
Query: 242 RYEFEGELRRKEIWDYPLDALREAIINALIHRDYTDPSNVQIKIF 286
E +R I +YP A+REAIINA HR+YT S+V++ ++
Sbjct: 243 WLEVTVGAKRVRIPEYPPRAVREAIINAFAHRNYTISSDVRVFVY 287
>pir||C82942 conserved hypothetical UU038 [imported] - Ureaplasma urealyticum
>gi|6898985|gb|AAF30443.1|AE002103_8 (AE002103)
conserved hypothetical [Ureaplasma urealyticum]
Length = 463
Score = 81.9 bits (199), Expect = 8e-15
Identities = 80/287 (27%), Positives = 128/287 (43%), Gaps = 30/287 (10%)
Query: 10 GESETIEFKRELND----SVYKTLSAFANTDGGILLLGVSNDGKVFG---FSGDLDSLAR 62
GE+ + K +L S K++ FAN GG L+ GV+ + V G + D + ++
Sbjct: 9 GETNFYDKKEKLEKKKIKSWLKSVCTFANGQGGKLIFGVNENNNVLGLENYLNDSEFISE 68
Query: 63 SIRHNLRINPP--IKVEEIGEKKVVIIDVSKSPVPISF-----KGRYYKRVGAQTVEMGW 115
+I+ + P I++ E K ++I+ + P F YKRVG Q+V
Sbjct: 69 TIKTKIDNIPEFDIEINEYENKIILILTIFPGRNPPYFLVDNGSKTPYKRVGNQSVIASI 128
Query: 116 EDLQRFFLQKSGVTWDSLPSSAALEDLDEETIRKFVHMARNRLPYINENEDVESILDKLG 175
DL + L+ T+DSL S+ L+D+ M +N EN + L
Sbjct: 129 NDLLNWCLRSQNRTYDSLVSNKLLKDVS-------FLMLKNEYQKHTENLWEDKFLKSFE 181
Query: 176 LLEDGKITNAALLLFGKEPQRYYIQAKVRIGRFKDP------ITIIDDKEIGGNLFTQVE 229
L+++ A LF Q Y Q+ V R+ I +DD E GNL +
Sbjct: 182 LIDNNNYLTNAGALFADGYQVY--QSGVFCTRWNGKTKTNGLIEALDDAEFEGNLLFLLN 239
Query: 230 EVMKVIMSHIGVRYEFEGELRRKEIWDYPLDALREAIINALIHRDYT 276
+ I + + +G L R + +YP+ A++E I+NALIHRDY+
Sbjct: 240 SSINFIKRNSKNMWR-KGVLYRIQYPEYPIKAVQEVIVNALIHRDYS 285
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.397
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105654210
Number of Sequences: 2977
Number of extensions: 4453867
Number of successful extensions: 12865
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12860
Number of HSP's gapped (non-prelim): 3
length of query: 287
length of database: 189,106,746
effective HSP length: 56
effective length of query: 231
effective length of database: 155,591,474
effective search space: 35941630494
effective search space used: 35941630494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)