BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0793 (PAB0793) DE:Hypothetical protein
         (479 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75099 hypothetical protein PAB0793 - Pyrococcus abyssi (st...   979  0.0
gb|AAG18699.1| (AE004975) Vng0061c [Halobacterium sp. NRC-1]           77  4e-13

>pir||C75099 hypothetical protein PAB0793 - Pyrococcus abyssi (strain Orsay)
           >gi|5458608|emb|CAB50096.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 479
           
 Score =  979 bits (2504), Expect = 0.0
 Identities = 479/479 (100%), Positives = 479/479 (100%)

Query: 1   MKGKHRGSAMVFKSITTIAKSIVKRNDATKRLVLRVYNQYQGRKAKKELYLRIKNIDFDE 60
           MKGKHRGSAMVFKSITTIAKSIVKRNDATKRLVLRVYNQYQGRKAKKELYLRIKNIDFDE
Sbjct: 1   MKGKHRGSAMVFKSITTIAKSIVKRNDATKRLVLRVYNQYQGRKAKKELYLRIKNIDFDE 60

Query: 61  YIDTSNKPDLNVIILTVDCLRYLNLSFTGYQRETTPFMDSLKAKFRAVSAAPWTYPSVAS 120
           YIDTSNKPDLNVIILTVDCLRYLNLSFTGYQRETTPFMDSLKAKFRAVSAAPWTYPSVAS
Sbjct: 61  YIDTSNKPDLNVIILTVDCLRYLNLSFTGYQRETTPFMDSLKAKFRAVSAAPWTYPSVAS 120

Query: 121 ILTGLYPHNHNAYIHSKIKNFDTLKAFKPIKKSVLTLPEILFAFGYEIYFGTAIDVASYP 180
           ILTGLYPHNHNAYIHSKIKNFDTLKAFKPIKKSVLTLPEILFAFGYEIYFGTAIDVASYP
Sbjct: 121 ILTGLYPHNHNAYIHSKIKNFDTLKAFKPIKKSVLTLPEILFAFGYEIYFGTAIDVASYP 180

Query: 181 LKSRVVPKLYLGDTPAEELLNDLRKWISKRKNSFFAYLQLGDVHEPIVPPEKFRNYFGQV 240
           LKSRVVPKLYLGDTPAEELLNDLRKWISKRKNSFFAYLQLGDVHEPIVPPEKFRNYFGQV
Sbjct: 181 LKSRVVPKLYLGDTPAEELLNDLRKWISKRKNSFFAYLQLGDVHEPIVPPEKFRNYFGQV 240

Query: 241 ENIPNIERWDFRRPEEQKGKEFEKYRRNRMLLYDNTLRYVDYAIERLYAFLEDSGLLDST 300
           ENIPNIERWDFRRPEEQKGKEFEKYRRNRMLLYDNTLRYVDYAIERLYAFLEDSGLLDST
Sbjct: 241 ENIPNIERWDFRRPEEQKGKEFEKYRRNRMLLYDNTLRYVDYAIERLYAFLEDSGLLDST 300

Query: 301 ILLITADHGEEFWEHAELEAENFYDPRGYYGVGHGHNVFNEIIEVPILFDGAIKKKGDFT 360
           ILLITADHGEEFWEHAELEAENFYDPRGYYGVGHGHNVFNEIIEVPILFDGAIKKKGDFT
Sbjct: 301 ILLITADHGEEFWEHAELEAENFYDPRGYYGVGHGHNVFNEIIEVPILFDGAIKKKGDFT 360

Query: 361 ENRVSSVDIMPTVLDLLGVSHSLTFDGQNVFEVKNKKRPLLSEAAGYGYEKKALIMGRYK 420
           ENRVSSVDIMPTVLDLLGVSHSLTFDGQNVFEVKNKKRPLLSEAAGYGYEKKALIMGRYK
Sbjct: 361 ENRVSSVDIMPTVLDLLGVSHSLTFDGQNVFEVKNKKRPLLSEAAGYGYEKKALIMGRYK 420

Query: 421 LLYAPDDGVQWLFDLKKDPSEQHPIKDREVTSVFVDKLNKMLKEDEKRRLINALRKVRI 479
           LLYAPDDGVQWLFDLKKDPSEQHPIKDREVTSVFVDKLNKMLKEDEKRRLINALRKVRI
Sbjct: 421 LLYAPDDGVQWLFDLKKDPSEQHPIKDREVTSVFVDKLNKMLKEDEKRRLINALRKVRI 479


>gb|AAG18699.1| (AE004975) Vng0061c [Halobacterium sp. NRC-1]
           Length = 451
           
 Score = 77.3 bits (187), Expect = 4e-13
 Identities = 79/291 (27%), Positives = 122/291 (41%), Gaps = 38/291 (13%)

Query: 194 TPAEELLNDLRKWISKRKNSFFAYLQLGDVHEPIVPPEKFRNYFGQVENIP-----NIER 248
           T AE L++ L  WI +R + +FA+L   D H P   P+ ++  F   E IP      + R
Sbjct: 160 TRAETLIDSLVDWIDERNDQWFAWLHPMDTHAPYEAPDDYQEQFLD-EPIPRRRSQKLAR 218

Query: 249 WDFRRPEEQKGKEFEKYRRNRMLLYDNTLRYVDYAIERLY-AFLEDSGLLDSTILLITAD 307
                P+E    E+E  ++    LY     Y+D  I RL  +F E     ++T+L+ TAD
Sbjct: 219 KATHHPDELSDDEWELQQQ----LYKAECSYLDDQIGRLLDSFPEPE--RENTLLVFTAD 272

Query: 308 HGEEFWEHAELEAENFYDPRGYYGVGHGHNVFNEIIEVPILFDGAIKKKGDFTENRVSSV 367
           HGE   EH                 GH    + E+I VP     A   +      + + +
Sbjct: 273 HGEMHGEHGL--------------GGHPQQFWEEVIHVPCAI-SAPGFEATTVNEQAALI 317

Query: 368 DIMPTVLDLLGVSHSLTFDGQNVF----EVKNKKRPLLSEAAGYGYEKKALIMGRYKLLY 423
           DI PT+LD +G+     +DG +V      V+ ++   +   +        +       L 
Sbjct: 318 DIPPTILDAVGIDAPEYWDGMSVLPDEGTVQEREYVFVDVESELNRNHAGVRRSDNWKLM 377

Query: 424 APDDGVQWLFDLKKDPSEQHPIKDR-----EVTSVFVDKLNKMLKEDEKRR 469
             DD  + L DL  +P E+ P + R     E      D L+  L E E+RR
Sbjct: 378 RHDDEGELLLDLDTNP-EEDPEQTRLNDAPEAYRALTDSLDNHLDEMERRR 427


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.140    0.410 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184575194
Number of Sequences: 2977
Number of extensions: 8327592
Number of successful extensions: 20950
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20947
Number of HSP's gapped (non-prelim): 2
length of query: 479
length of database: 189,106,746
effective HSP length: 55
effective length of query: 424
effective length of database: 156,189,961
effective search space: 66224543464
effective search space used: 66224543464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 167 (69.5 bits)