BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0795 (PAB0795) DE:rhamnosyl transferase related protein
(352 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75099 rhamnosyl transferase related protein PAB0795 - Pyro... 738 0.0
dbj|BAA94396.1| (AB041266) rhamnosyl transferase [Actinobacillus... 164 1e-39
gb|AAF45033.1|AF146602_1 (AF146602) putative rhamnosyltransferas... 130 3e-29
gi|11497936 rhamnosyl transferase (rfbQ) [Archaeoglobus fulgidus... 129 5e-29
gb|AAB66522.1| (AF004325) putative rhamnosyl transferase [Strept... 129 5e-29
gi|11497935 glycosyl transferase [Archaeoglobus fulgidus] >gi|74... 123 4e-27
pir||B69097 conserved hypothetical protein MTH172 - Methanobacte... 120 3e-26
pir||H75596 probable rhamnosyltransferase - Deinococcus radiodur... 119 6e-26
gb|AAB47844.1| (U61226) orfE gene product [Leptospira interrogan... 87 2e-16
gb|AAD12973.1| (AF078135) unknown [Leptospira borgpetersenii] 87 3e-16
emb|CAB65189.1| (AJ007311) putative glycosyl transferase [Legion... 78 1e-13
gb|AAC44337.1| (U60208) ; orf1 [Porphyromonas gingivalis] 76 8e-13
emb|CAB01937.1| (Z79692) ExpE2 [Sinorhizobium meliloti] 74 2e-12
emb|CAB41458.1| (Y08703) glycosyltransferase [Sinorhizobium meli... 71 2e-11
emb|CAB88917.1| (AL353862) putative integral membrane protein [S... 71 3e-11
pir||S18942 hypothetical protein (whiB 3' region) - Streptomyces... 71 3e-11
gb|AAC18892.1| (L22864) transmembrane protein [Streptomyces aure... 70 5e-11
>pir||F75099 rhamnosyl transferase related protein PAB0795 - Pyrococcus abyssi
(strain Orsay) >gi|5458611|emb|CAB50099.1| (AJ248286)
rhamnosyl transferase related protein [Pyrococcus
abyssi]
Length = 352
Score = 738 bits (1884), Expect = 0.0
Identities = 352/352 (100%), Positives = 352/352 (100%)
Query: 1 MYVNAPRVSIIILNWNGWKDTIECLESLYRITYPNYDVIVVDNGSRDDSVQKIKEYAEGK 60
MYVNAPRVSIIILNWNGWKDTIECLESLYRITYPNYDVIVVDNGSRDDSVQKIKEYAEGK
Sbjct: 1 MYVNAPRVSIIILNWNGWKDTIECLESLYRITYPNYDVIVVDNGSRDDSVQKIKEYAEGK 60
Query: 61 IRVNSKFFDYNPNNKPIKVFEINESEARQGEFNKLVYEKFDPNRRMILIKNNNNYGYAGG 120
IRVNSKFFDYNPNNKPIKVFEINESEARQGEFNKLVYEKFDPNRRMILIKNNNNYGYAGG
Sbjct: 61 IRVNSKFFDYNPNNKPIKVFEINESEARQGEFNKLVYEKFDPNRRMILIKNNNNYGYAGG 120
Query: 121 NNVGIKFALSVLDPGYVLLLNNDTVVDPNFLTELVKVAESDEKIGIVGPKIYYYDYKGRS 180
NNVGIKFALSVLDPGYVLLLNNDTVVDPNFLTELVKVAESDEKIGIVGPKIYYYDYKGRS
Sbjct: 121 NNVGIKFALSVLDPGYVLLLNNDTVVDPNFLTELVKVAESDEKIGIVGPKIYYYDYKGRS 180
Query: 181 DVISFAGEELILWKGTAVRYGEREVDRGQWDKLRVVDKIEGSCMLIKGKVLERIGLFDEK 240
DVISFAGEELILWKGTAVRYGEREVDRGQWDKLRVVDKIEGSCMLIKGKVLERIGLFDEK
Sbjct: 181 DVISFAGEELILWKGTAVRYGEREVDRGQWDKLRVVDKIEGSCMLIKGKVLERIGLFDEK 240
Query: 241 FFCYWEETDLCFRAKRKGYTLVYVPKAKIWHKIASSSGGTLRPFYIYHMTRNRIWFLIKN 300
FFCYWEETDLCFRAKRKGYTLVYVPKAKIWHKIASSSGGTLRPFYIYHMTRNRIWFLIKN
Sbjct: 241 FFCYWEETDLCFRAKRKGYTLVYVPKAKIWHKIASSSGGTLRPFYIYHMTRNRIWFLIKN 300
Query: 301 ELYKSLKINLLYVFIWEIWFRFLTYLVYYKRPSLFSFYMQGIFDGIRRNKKF 352
ELYKSLKINLLYVFIWEIWFRFLTYLVYYKRPSLFSFYMQGIFDGIRRNKKF
Sbjct: 301 ELYKSLKINLLYVFIWEIWFRFLTYLVYYKRPSLFSFYMQGIFDGIRRNKKF 352
>dbj|BAA94396.1| (AB041266) rhamnosyl transferase [Actinobacillus
actinomycetemcomitans]
Length = 321
Score = 164 bits (412), Expect = 1e-39
Identities = 101/279 (36%), Positives = 161/279 (57%), Gaps = 24/279 (8%)
Query: 7 RVSIIILNWNGWKDTIECLESLYRITYPNYDVIVVDNGSRDDSVQKIKEYA--EGKIRVN 64
R+ IIILN+NGWKDTIECLES+ + Y N+ +IVVDN S++DS+ I +A I
Sbjct: 4 RIYIIILNYNGWKDTIECLESVLKSDYKNFKIIVVDNNSQNDSIGFICNWAVIPESISAE 63
Query: 65 SKFFD--YNPN-NKPIKVFEINESEARQGEFNKLVYEKFDPNRRMILIKNNNNYGYAGGN 121
+ +F+ PN KPIK +ESE Q + + ++IL++ N N G+A GN
Sbjct: 64 NVYFNKFIRPNAEKPIKYSIWSESEFLQ---------QSNIQEKLILVRANENGGFAKGN 114
Query: 122 NVGIKFALSVLDPGYVLLLNNDTVVDPNFLTELVKVAESDEKIGIVGPKIYYYDYKGRSD 181
N+ I++A+ + YV LLNNDTV+ N L++L++ A+ +E IGI G ++YY Y +
Sbjct: 115 NIAIQYAMKDPECRYVWLLNNDTVIKQNTLSKLIEYADKNE-IGICGSSLFYY-YNPKK- 171
Query: 182 VISFAGEELILWKGTAVRYGEREVDRGQWDKLRVVDKIEGSCMLIKGKVLERIGLFDEKF 241
V ++ G + ++ +D + +D + G+ LI +++E+IG E +
Sbjct: 172 VQAYGGHINRFFGTSSHILNVNNID-------KKLDYVVGASFLINKRLIEKIGYLPEDY 224
Query: 242 FCYWEETDLCFRAKRKGYTLVYVPKAKIWHKIASSSGGT 280
F Y+EETD CF A++ G+TL + ++HK S+G +
Sbjct: 225 FLYYEETDYCFNARKNGFTLGIALDSIVYHKEGGSTGAS 263
>gb|AAF45033.1|AF146602_1 (AF146602) putative rhamnosyltransferase [Aeromonas hydrophila]
Length = 295
Score = 130 bits (323), Expect = 3e-29
Identities = 101/348 (29%), Positives = 164/348 (47%), Gaps = 57/348 (16%)
Query: 3 VNAPRVSIIILNWNGWKDTIECLESLYRITYPNYDVIVVDNGSRDDSVQKIKEYAEGKIR 62
+ +P++ ++ + +N + +SL Y NY + VVDN S +S+ K +E +
Sbjct: 1 MKSPKLGLVTVLYNTPSVLPDFFKSLSCQNYKNYTLYVVDNSSTSESLDLAKSLSE-QYA 59
Query: 63 VNSKFFDYNPNNKPIKVFEINESEARQGEFNKLVYEKFDPNRRMILIKNNNNYGYAGGNN 122
V++ F D NN G A GNN
Sbjct: 60 VSTIFID----------------------------------------NQGNNVGVAAGNN 79
Query: 123 VGIKFALSVLDPG--YVLLLNNDTVVD-PNFLTELVKVAESDEKIGIVGPKIYYYDYKGR 179
G AL+ G Y++ +NND + + P +ELVKVA +D+ + ++ P I Y
Sbjct: 80 QG---ALAAGHDGCDYIVFINNDLLFEQPTVFSELVKVA-TDDNVKVLSPLILNYP---- 131
Query: 180 SDVISFAGEELILWKGTAVRYGEREVDRGQWDKLRVVDKIEGSCMLIKGKVLERIGLFDE 239
+ I +AG E+ K A + EV + Q + ++I V E++GL DE
Sbjct: 132 AGNIWYAGGEIDELKAVAPHFMIDEVYQPQTIRRARFTYAPTCFLMIARDVWEQVGLMDE 191
Query: 240 KFFCYWEETDLCFRAKRKGYTLVYVPKAKIWHKIASSSGGTLRPFYIYHMTRNRIWFLIK 299
++F Y+++TD +R + G+ + +P A I+HK+ SS+GG + F +YH+TRNRI+F+ K
Sbjct: 192 RYFAYYDDTDFLYRIVQSGFLVELIPSALIYHKVGSSTGGDISRFGMYHLTRNRIYFIKK 251
Query: 300 NELYKSLKINLLYVFIWEIWFRFLTYLVYYKRPSLFSFYMQGIFDGIR 347
N I+LLY + + R LT K P L S +GI DG++
Sbjct: 252 NIKGMKKFISLLYTLMTRV-LRMLT----IKNPELRSAIGKGILDGLK 294
>gi|11497936 rhamnosyl transferase (rfbQ) [Archaeoglobus fulgidus]
>gi|7430258|pir||B69290 rhamnosyl transferase (rfbQ)
homolog - Archaeoglobus fulgidus
>gi|2650313|gb|AAB90912.1| (AE001082) rhamnosyl
transferase (rfbQ) [Archaeoglobus fulgidus]
Length = 286
Score = 129 bits (321), Expect = 5e-29
Identities = 106/350 (30%), Positives = 156/350 (44%), Gaps = 78/350 (22%)
Query: 8 VSIIILNWNGWKDTIECLESLYRITYPNYDVIVVDNGSRDDSVQKIKEYAEGKIRVNSKF 67
V I++N+N + DT EC++SL TYP V+VVDNGS + ++K++
Sbjct: 4 VYAIVVNYNNFDDTAECIDSLLNQTYP-CRVVVVDNGSEREVIEKLRR------------ 50
Query: 68 FDYNPNNKPIKVFEINESEARQGEFNKLVYEKFDPNRRMILIKNNNNYGYAGGNNVGIKF 127
+++ E+ E N GYAGG N GI+
Sbjct: 51 -----KYPQVEMLELGE-----------------------------NRGYAGGCNAGIRA 76
Query: 128 ALSVLDPGYVLLLNNDTVVDPNFLTELVKVAESDEKIGIVGPKIYYYDYKGRSDVISFAG 187
+ D YVL+ NND V + + + +V E DE I P + YY G
Sbjct: 77 VIDKAD--YVLISNNDVVFERDAVERMVSEMEEDETIAACQPVVKYY------------G 122
Query: 188 EELILWKGTAVRYGEREVDRGQWDKLRVVD-------KIEGSCMLIKGKVLERIGLFDEK 240
+E I GT + G + +K+ V+ + G MLI+ L+ +G FDE+
Sbjct: 123 DERIWSAGTRIFLGYPVLHLK--NKMVEVEISFDSPFGLVGCAMLIRSSALKDVGFFDEE 180
Query: 241 FFCYWEETDLCFRAKRKGYTLVYVPKAKIWHKIASSSGGTLRPFYIYHMTRNRIWFLIKN 300
F EET+ C RA++KGY L V KA + HK+ S+S G P Y+Y+ RN W ++
Sbjct: 181 LFMMHEETEWCIRARKKGYRLA-VCKAVVRHKV-SASLGLFSPHYLYYTARN--WLIVAR 236
Query: 301 ELYKSLKINLLYVFIWEIWFRFLTYLVYYKRPSLFSFYMQGIFDGIRRNK 350
K++ Y I E R L YLV KR Y++G+ GI K
Sbjct: 237 RAGKAM---FFYALITEP-LRVLYYLVRLKRKGDIIQYLKGVVHGILSRK 282
>gb|AAB66522.1| (AF004325) putative rhamnosyl transferase [Streptococcus
pneumoniae]
Length = 300
Score = 129 bits (321), Expect = 5e-29
Identities = 95/345 (27%), Positives = 170/345 (48%), Gaps = 63/345 (18%)
Query: 7 RVSIIILNWNGWKDTIECLESLYRITYPN-YDVIVVDNGSRDDSVQKIKEYAEGKIRVNS 65
+V I+ILN+N +++TIE ++SL N YD+++VDN S +DSV+++ +
Sbjct: 3 KVCIVILNYNNYEETIERVQSLRSTIKSNEYDIVIVDNNSVNDSVKELSKALS------- 55
Query: 66 KFFDYNPNNKPIKVFEINESEARQGEFNKLVYEKFDPNRRMILIKNNNNYGYAGGNNVGI 125
PIK+ I + N GYA GNN+GI
Sbjct: 56 ----------PIKI-----------------------------ITSLENRGYANGNNIGI 76
Query: 126 KFALSVLDPGY--VLLLNNDTVVDPNFLTELVKVAESDEKIGIVGPKIYYYDYKGRSDVI 183
K+A D GY + +LNNDT+++ +FL + E++ + V P + Y ++++
Sbjct: 77 KYAE---DNGYDYICILNNDTLIEVDFLESCKRELENNSFVAFVSPVLVEYK---DNNLV 130
Query: 184 SFAGEELILWKGTAVRYGEREVDRGQWDKLRVVDKIEGSCMLIKGKVLERIGLFDEKFFC 243
G ++ + +G V R + D I G+C++ K +L+ IG E +F
Sbjct: 131 QSTGGDIFINRGI-VTLKNHGAQRDKLPSKIESDYIGGACLMFKTSILKIIGYIPESYFL 189
Query: 244 YWEETDLCFRAKRKGYTLVYVPKAKIWHKIASSSGGTLRPFYIYHMTRNRIWFLIKNELY 303
++EET+ C+RAK+ GY + + ++ ++HK S S + Y M RNR+ F+ +N +
Sbjct: 190 FYEETEWCYRAKKLGYKNICLTQSYVYHK-GSVSIKAVNGLQEYLMARNRVVFVRRN-IN 247
Query: 304 KSLKIN--LLYVFIWEIWFRFLTYLVYYKRPSLFSFYMQGIFDGI 346
LK + L Y+F+ +++ FL ++ + +Y+ G+F+ I
Sbjct: 248 SKLKYSAFLFYLFMQQLYHCFLRRDCSKRK---YKYYLDGVFNRI 289
>gi|11497935 glycosyl transferase [Archaeoglobus fulgidus]
>gi|7450246|pir||A69290 probable glycosyl transferase
MTH172 - Archaeoglobus fulgidus
>gi|2650314|gb|AAB90913.1| (AE001082) glycosyl
transferase [Archaeoglobus fulgidus]
Length = 324
Score = 123 bits (305), Expect = 4e-27
Identities = 106/346 (30%), Positives = 167/346 (47%), Gaps = 63/346 (18%)
Query: 8 VSIIILNWNGWKDTIECLESLYRITYPNYDVIVVDNGSRDDSVQKIKEYAEGKIRVNSKF 67
++ I++N+NG K ECL S+ TY V+V+DNGS D S ++ F
Sbjct: 2 LTFIVVNYNGEKYLKECLNSIINQTYRKLRVLVIDNGSTDGSRDILRN-----------F 50
Query: 68 FDYNPNNKPIKVFEINESEARQGEFNKLVYEKFDPNRRMILIKNNNNYGYAGGNNVGIKF 127
DY Y +F+ +I+N N G+A N GI+
Sbjct: 51 EDY--------------------------YSRFE------VIRNEENLGFAKAANQGIEM 78
Query: 128 ALSVLDPGYVLLLNNDTVVDPNFLTELVKVAESDEKIGIVGPKIYYYDYKGRSDVISFAG 187
A + +V L+NND ++ N+ E++K A+ D + GI KI + D GR I+ AG
Sbjct: 79 A----NTKFVALVNNDAFLERNWAEEMLKAAD-DLRAGIFASKILFED--GR---INSAG 128
Query: 188 EELILWKGTAV-RYGEREVDRGQWDKLRVVDKIEGSCMLIKGKVLERIGLFDEKFFCYWE 246
+ +G AV G E D GQ+D+ V + + + + E +GLFDE +F Y E
Sbjct: 129 HAI--HRGLAVMERGFLEKDEGQFDEPCYVAGACAAAAMYRRSLFEDVGLFDEDYFMYNE 186
Query: 247 ETDLCFRAKRKGYTLVYVPKAKIWHKIASSSGGTLRPFYIYHMTRNRIWFLIKNELYKSL 306
+ DL RA +G+ ++YVP A +H + S+S G L F +Y+ +RN +W ++KN + + L
Sbjct: 187 DVDLSLRALIRGWKILYVPTAIAYH-LHSASTGFLSDFSVYYNSRNWVWSVVKN-VPRDL 244
Query: 307 KINLLYVFIWEIWFRFLTYLVYYKRPSLFSFYMQGIFDGIRRNKKF 352
LL F + I F + L + R + ++ D IR +KF
Sbjct: 245 ---LLREFPYFILRNFSSMLFFCLRGNF--AILKSKIDAIRELRKF 285
>pir||B69097 conserved hypothetical protein MTH172 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621215|gb|AAB84678.1| (AE000805) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 332
Score = 120 bits (297), Expect = 3e-26
Identities = 95/302 (31%), Positives = 135/302 (44%), Gaps = 57/302 (18%)
Query: 6 PRVSIIILNWNGWKDTIECLESLYRITYPNYDVIVVDNGSRDDSVQKIKEYAEGKIRVNS 65
P II N NG SL R TY ++ V+ +DNGS D SV IK S
Sbjct: 2 PETYIITPNLNGVSFLEVYFRSLLRQTYEDFRVVFIDNGSSDGSVDFIK----------S 51
Query: 66 KFFDYNPNNKPIKVFEINESEARQGEFNKLVYEKFDPNRRMILIKNNNNYGYAGGNNVGI 125
F +Y + R+ILI+N+ N G+A NN GI
Sbjct: 52 NFSEYLGD-------------------------------RIILIENHENLGFAASNNQGI 80
Query: 126 KFALSVLDPGYVLLLNNDTVVDPNFLTELVKVAESDEKIGIVGPKIYYYDYKGRSDVISF 185
+ AL YV+ LNNDT V P+F+ L+ A DE++G V ++ + + +I
Sbjct: 81 RIALDDPQCRYVVCLNNDTEVLPDFIENLILAAGDDERVGSVQARMIWGQNR---KLIDS 137
Query: 186 AGEELILWKGTAVRYGEREVDRGQWDKLRVVDKIEGSCMLIKGKVLERIGL----FDEKF 241
AG E L G G E ++ R++ G+C L + + LE + + FDE F
Sbjct: 138 AGLEYSL-NGLGFNRGAYEPVENFNERARILGCCAGAC-LYRREALEDVEVDAEYFDEDF 195
Query: 242 FCYWEETDLCFRAKRKGYTLVYVPKAKIWHKIASSSGGT---LRPFYIYHMTRNRIWFLI 298
F Y+E+ DL R + G+ +Y P A ++H GGT + F +YH RN W I
Sbjct: 196 FAYYEDFDLALRLRSAGWDSLYAPDATVYH----YKGGTNPFISDFTVYHNWRNYTWTFI 251
Query: 299 KN 300
KN
Sbjct: 252 KN 253
>pir||H75596 probable rhamnosyltransferase - Deinococcus radiodurans (strain
R1) >gi|6460565|gb|AAF12271.1|AE001862_97 (AE001862)
rhamnosyltransferase, putative [Deinococcus radiodurans]
Length = 271
Score = 119 bits (295), Expect = 6e-26
Identities = 80/268 (29%), Positives = 126/268 (46%), Gaps = 57/268 (21%)
Query: 9 SIIILNWNGWKDTIECLESLYRITYPNYDVIVVDNGSRDDSVQKIKEYAEGKIRVNSKFF 68
+I++LNW KDT++C+ESL D+I+VDN S+D+S+ IKE+ F
Sbjct: 5 AIVLLNWRSAKDTVKCVESLIAAEIRQCDIIIVDNDSQDESINVIKEH----------FT 54
Query: 69 DYNPNNKPIKVFEINESEARQGEFNKLVYEKFDPNRRMILIKNNNNYGYAGGNNVGIKFA 128
D +I++ N G+A G NVGI+ A
Sbjct: 55 DVR------------------------------------VIESGKNGGFAYGCNVGIRAA 78
Query: 129 LSVLDPGYVLLLNNDTVVDPNFLTELVKVAESDEKIGIVGPKIYYYDYKGRSDVISFAGE 188
LS YV LLNNDT+VD L +++ + ++K IVG I ++ +
Sbjct: 79 LSS-GYNYVWLLNNDTIVDKTTLPNMIEEIKRNKK-AIVGSIIRDIEFPWSVQAVGGGTI 136
Query: 189 ELILWKGTAVRYGEREVDRGQWDKLRVVDKIEGSCMLIKGKVLERIGLFDEKFFCYWEET 248
+ G ++ +D + +D + G+ +L+ + LE IGL +E FF YWE+T
Sbjct: 137 NFLTGTGRHIK---------TFDDVDKLDYLLGASILVSREALESIGLLNEDFFMYWEDT 187
Query: 249 DLCFRAKRKGYTLVYVPKAKIWHKIASS 276
+ C RA+RKGY L ++ ++HK S
Sbjct: 188 EFCIRARRKGYFLKVAKQSNVYHKEGGS 215
>gb|AAB47844.1| (U61226) orfE gene product [Leptospira interrogans]
>gi|5814322|gb|AAD52190.1|AF144879_29 (AF144879) unknown
[Leptospira interrogans]
Length = 324
Score = 87.4 bits (213), Expect = 2e-16
Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 9/218 (4%)
Query: 83 NESEARQGEFNKLVYEKFDPNRRMILIKNNNNYGYAGGNNVGIKFALSVLDPGYVLLLNN 142
N+S+ E KL+ +K N+R I ++ N G+AGGNN IK A + LL+N
Sbjct: 37 NDSKDGTQEQLKLLSKK---NKRSIHF-SSKNLGFAGGNNEAIKVAPK---SDWTLLINP 89
Query: 143 DTVVDPNFLTELVKVAESDEKIGIVGPKIYYYDYKGRSDVISFAGEELILWKGTAVRYGE 202
D+ + NF +E + ES K + + D + +I AG+ + G A R G
Sbjct: 90 DSRLSDNFFSECERTLESKGKEYSIISFLMLKDNQEEKKLIDGAGD-IYHVSGAAWRRGY 148
Query: 203 REVDRGQWDKLRVVDKIEGSCMLIKGKVLERIGLFDEKFFCYWEETDLCFRAKRKGYTLV 262
+ + ++ + + G M I+ +V ERIG FD FFCY E+ DL FRA+ G ++
Sbjct: 149 KRILSEEYLRESEIFSACGGAMAIRTEVYERIGGFDSDFFCYMEDVDLSFRARLMGERVL 208
Query: 263 YVPKAKIWHKIASSSGGTLRPFYIYHMTRNRIWFLIKN 300
+ P K++H S F +Y+ RN + KN
Sbjct: 209 FSPNIKVYHH-GFGSTEEKSTFSLYYGLRNALVVYWKN 245
>gb|AAD12973.1| (AF078135) unknown [Leptospira borgpetersenii]
Length = 324
Score = 87.0 bits (212), Expect = 3e-16
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 12/232 (5%)
Query: 83 NESEARQGEFNKLVYEKFDPNRRMILIKNNNNYGYAGGNNVGIKFALSVLDPGYVLLLNN 142
N+S+ E KL+ EK +RR+I + N G+AGGNN IK A + LL+N
Sbjct: 37 NDSKDGTQEQLKLLSEK---DRRLIHF-SPKNLGFAGGNNEAIKIAPK---SDWTLLINP 89
Query: 143 DTVVDPNFLTELVKVAESDEKIGIVGPKIYYYDYKGRSDVISFAGEELILWKGTAVRYGE 202
D+ + +F +E K ES K + + D + +I AG+ + G A R G
Sbjct: 90 DSRLSDDFFSECEKTLESKGKEYSIVSFLMLKDNQVEKKLIDGAGD-IYHVSGAAWRRGY 148
Query: 203 REVDRGQWDKLRVVDKIEGSCMLIKGKVLERIGLFDEKFFCYWEETDLCFRAKRKGYTLV 262
+ V ++ + + G M I+ +V +R+G FD FFCY E+ DL FRA+ G ++
Sbjct: 149 KRVLSEEYLRESEIFSACGGAMAIRTEVYKRMGGFDSDFFCYMEDVDLSFRARLTGERVL 208
Query: 263 YVPKAKIWHKIASSSGGTLRPFYIYHMTRNRIWFLIKNELYKSLKINLLYVF 314
+ P KI+H S F +Y+ RN + KN L L Y+F
Sbjct: 209 FSPNIKIYHH-GFGSTKEKSAFSLYYGLRNALVVYWKN---MPLSYALRYIF 256
>emb|CAB65189.1| (AJ007311) putative glycosyl transferase [Legionella pneumophila]
Length = 339
Score = 78.4 bits (190), Expect = 1e-13
Identities = 68/245 (27%), Positives = 108/245 (43%), Gaps = 41/245 (16%)
Query: 106 MILIKNNNNYGYAGGNNVGIKFALSVLDP--GYVLLLNNDTVVDPNFLTELVKVAESDEK 163
+I++ +N N G+A GNN I++ LDP ++ LLN D ++L E+V ++ +
Sbjct: 77 IIIVVSNINLGFAAGNNKAIEY----LDPKVNWIALLNPDAYPHKDWLLEMVSAIKTHPQ 132
Query: 164 IGIVGPKIYY----YDYKGRSDVISFAGEELILWKGTAVRYGERE-VDRGQWDKLRVVDK 218
+G K+ Y G DV +G+ A R R+ +D+ D +
Sbjct: 133 YAFMGSKLICENEPYLLDGTGDVYHISGK--------AWRLNHRKPLDKAPKDMQELFAP 184
Query: 219 IEGSCMLIKGKVLERIGLFDEKFFCYWEETDLCFRAKRKGYTLVYVPKAKIWHKIASSSG 278
+ L + + FDE++FCY+E+ DL FR GY Y+P A IA +G
Sbjct: 185 CAAAA-LYRRDAFNAVKGFDEQYFCYYEDVDLAFRLWLAGYKGCYIPTA-----IAEHTG 238
Query: 279 GTL----RPFYIYHMTRNRIWFLIKNE----LYKSLKINLLYVFIWEIWFRFLTYLVYYK 330
+ FY Y+ RN +W KN L +L ++LL T L++ K
Sbjct: 239 SAITKKHSDFYTYYGHRNLVWTYFKNMPLLLLIATLPLHLL--------LNIATLLLFIK 290
Query: 331 RPSLF 335
R F
Sbjct: 291 RKQTF 295
>gb|AAC44337.1| (U60208) ; orf1 [Porphyromonas gingivalis]
Length = 322
Score = 75.7 bits (183), Expect = 8e-13
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 8/203 (3%)
Query: 108 LIKNNNNYGYAGGNNVGIKFALSVLDPGYVLLLNNDTVVDPNFLTELVKVAESDEKIGIV 167
LI NYG+A G N A++ + V+LLN+D V +L + + + + V
Sbjct: 44 LILFPENYGFAEGYNR----AIAQTECDCVVLLNSDVEVSEGWLDAPLALLQERSDVAAV 99
Query: 168 GPKIYYYDYKGRSDVISFAGEELILWKGTAVR---YGEREVDRGQWDKLRVVDKIEGSCM 224
PKI K + AG + W R + E D GQ+D + V G+ +
Sbjct: 100 QPKIRALRDKHAFEYAGAAGGYVDRWGYPFCRGRIFDTVETDTGQYDDIAEVFWASGAAL 159
Query: 225 LIKGKVLERIGLFDEKFFCYWEETDLCFRAKRKGYTLVYVPKAKIWHKIASSSGGTLRPF 284
I+ +V +G D +FF + EE DLC+R +G+ + P + ++H + S P
Sbjct: 160 FIRRQVYMAVGGLDPRFFAHQEEIDLCWRLHSRGWRIAVAPSSTVFH-LGGGSLDMKNPR 218
Query: 285 YIYHMTRNRIWFLIKNELYKSLK 307
+Y RN + L KN +LK
Sbjct: 219 KVYLNFRNNLLMLYKNLPETALK 241
>emb|CAB01937.1| (Z79692) ExpE2 [Sinorhizobium meliloti]
Length = 749
Score = 74.1 bits (179), Expect = 2e-12
Identities = 47/168 (27%), Positives = 83/168 (48%), Gaps = 7/168 (4%)
Query: 106 MILIKNNNNYGYAGGNNVGIKFALSVLDPGYVLLLNNDTVVD-PNFLTELVKVAESDEKI 164
M L+ N N GYA N G +FA + V++LN+D V P +L +L++ +
Sbjct: 526 MKLVVMNRNSGYARACNAGARFARGSV----VVMLNSDVVPSAPGWLQKLIRPLMEQRSL 581
Query: 165 GIVGPKIYYYDYKGRSDVISFAGEELILWKGTAVRYGEREVDRGQWDKLRVVDKIEGSCM 224
G +GPK+ + D + + FA ++ +W G D R V I G+C+
Sbjct: 582 GAIGPKLIFEDGSLQHAALYFARDQRGIWLNHHFHKG-MPGDYAPAQLARSVPGITGACL 640
Query: 225 LIKGKVLERIGLFDEKFFCY-WEETDLCFRAKRKGYTLVYVPKAKIWH 271
+ + ++ E + + E + +E++DLC + +R GY + Y P A ++H
Sbjct: 641 VTRREIYELVDGYTEDYVIGDYEDSDLCLKIRRCGYDIAYEPSACLYH 688
>emb|CAB41458.1| (Y08703) glycosyltransferase [Sinorhizobium meliloti]
Length = 749
Score = 71.0 bits (171), Expect = 2e-11
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 19/174 (10%)
Query: 106 MILIKNNNNYGYAGGNNVGIKFALSVLDPGYVLLLNNDTVVDP-NFLTELVKVAESDEKI 164
M L+ + N GYA N G +FA + +++LN+D V +L L++ + +
Sbjct: 526 MKLVVMSRNGGYARACNAGARFARGAV----IVMLNSDVVPSAAGWLQRLIRPLMEQKSL 581
Query: 165 GIVGPKIYYYDYKGRSDVISFAGEELILW------KGTAVRYGEREVDRGQWDKLRVVDK 218
G +GPK+ + D + + FA ++ +W KG Y + R V
Sbjct: 582 GAIGPKLIFEDGSLQHAGLYFARDQRGIWLNHHFHKGMPGDYAPAQFSRS-------VPG 634
Query: 219 IEGSCMLIKGKVLERIGLFDEKFFCY-WEETDLCFRAKRKGYTLVYVPKAKIWH 271
I G+C++ + + ER+ + E + +E++DLC + +R GY +VY P A ++H
Sbjct: 635 ITGACLVTRRETYERVDGYTEDYVIGDYEDSDLCLKIRRCGYDIVYEPSACLYH 688
>emb|CAB88917.1| (AL353862) putative integral membrane protein [Streptomyces
coelicolor A3(2)]
Length = 1268
Score = 70.6 bits (170), Expect = 3e-11
Identities = 45/147 (30%), Positives = 78/147 (52%), Gaps = 10/147 (6%)
Query: 136 YVLLLNNDTVVDPNFLTELVKVAESDEKIG-----IVGPKIY-YYDYKGRSDVISFAGEE 189
++ LL++D +P L +L++V +++ ++G +VGPK+ +YD + +V
Sbjct: 140 WLWLLHDDCAPEPEALAQLLRVVDTEYELGRDDVAVVGPKLRGWYDRRQLLEVGVSIANS 199
Query: 190 LILWKGTAVRYGEREVDRGQWDKLRVVDKIEGSCMLIKGKVLERIGLFDEKFFCYWEETD 249
W G RE D+GQ D +R V + + MLI+ V ER+G FD + ++ D
Sbjct: 200 GRRWTGL----DRREQDQGQHDHVRTVLSVSTAGMLIRRDVFERLGGFDRRLPLMRDDVD 255
Query: 250 LCFRAKRKGYTLVYVPKAKIWHKIASS 276
LC+RA G ++ P+A + H A+S
Sbjct: 256 LCWRAHAAGLRVLVAPEAVVRHAEAAS 282
>pir||S18942 hypothetical protein (whiB 3' region) - Streptomyces coelicolor
>gi|49003|emb|CAA44176.1| (X62287) regulatory protein
[Streptomyces coelicolor A3(2)]
Length = 914
Score = 70.6 bits (170), Expect = 3e-11
Identities = 45/147 (30%), Positives = 78/147 (52%), Gaps = 10/147 (6%)
Query: 136 YVLLLNNDTVVDPNFLTELVKVAESDEKIG-----IVGPKIY-YYDYKGRSDVISFAGEE 189
++ LL++D +P L +L++V +++ ++G +VGPK+ +YD + +V
Sbjct: 140 WLWLLHDDCAPEPEALAQLLRVVDTEYELGRDDVAVVGPKLRGWYDRRQLLEVGVSIANS 199
Query: 190 LILWKGTAVRYGEREVDRGQWDKLRVVDKIEGSCMLIKGKVLERIGLFDEKFFCYWEETD 249
W G RE D+GQ D +R V + + MLI+ V ER+G FD + ++ D
Sbjct: 200 GRRWTGL----DRREQDQGQHDHVRTVLSVSTAGMLIRRDVFERLGGFDRRLPLMRDDVD 255
Query: 250 LCFRAKRKGYTLVYVPKAKIWHKIASS 276
LC+RA G ++ P+A + H A+S
Sbjct: 256 LCWRAHAAGLRVLVAPEAVVRHAEAAS 282
>gb|AAC18892.1| (L22864) transmembrane protein [Streptomyces aureofaciens]
Length = 1219
Score = 69.9 bits (168), Expect = 5e-11
Identities = 41/142 (28%), Positives = 76/142 (52%), Gaps = 5/142 (3%)
Query: 136 YVLLLNNDTVVDPNFLTELVKVAESDEKIGIVGPKIY-YYDYKGRSDVISFAGEELILWK 194
++ LL++D+ +P+ L EL++VA+ + ++GPK+ +YD K + W
Sbjct: 140 WLWLLHDDSAPEPDALAELLRVADENPDAAVIGPKLRGWYDKKQLLEAGVTIARSGRCWT 199
Query: 195 GTAVRYGEREVDRGQWDKLRVVDKIEGSCMLIKGKVLERIGLFDEKFFCYWEETDLCFRA 254
G RE D+GQ D++R V + + ML++ V + +G FD + ++ DLC+RA
Sbjct: 200 GL----DRREQDQGQHDQVRPVLSVSTAGMLVRRDVYDALGGFDRRLPLMRDDVDLCWRA 255
Query: 255 KRKGYTLVYVPKAKIWHKIASS 276
+T++ P A + H A++
Sbjct: 256 HSADHTVLVAPDAVLRHAEAAA 277
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.143 0.445
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142782400
Number of Sequences: 2977
Number of extensions: 6266332
Number of successful extensions: 14358
Number of sequences better than 1.0e-10: 17
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 14314
Number of HSP's gapped (non-prelim): 28
length of query: 352
length of database: 189,106,746
effective HSP length: 50
effective length of query: 302
effective length of database: 159,182,396
effective search space: 48073083592
effective search space used: 48073083592
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)