BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0796 (PAB0796) DE:SUGAR TRANSFERASE RELATED PROTEIN
(331 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75099 sugar transferase related protein PAB0796 - Pyrococc... 671 0.0
emb|CAC12176.1| (AL445066) conserved hypothetical protein [Therm... 83 6e-15
gb|AAK43339.1| Glycosyltransferase, putative [Sulfolobus solfata... 82 1e-14
pir||G75005 hyaluronan synthase related PAB1314 - Pyrococcus aby... 75 9e-13
pir||A71157 hypothetical protein PH0456 - Pyrococcus horikoshii ... 73 6e-12
gb|AAD12967.1| (AF078135) unknown [Leptospira borgpetersenii] 69 9e-11
>pir||G75099 sugar transferase related protein PAB0796 - Pyrococcus abyssi
(strain Orsay) >gi|5458612|emb|CAB50100.1| (AJ248286)
SUGAR TRANSFERASE RELATED PROTEIN [Pyrococcus abyssi]
Length = 331
Score = 671 bits (1712), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MRISLITTVKNEENSIRAFLESILQQSRPPDEFIIVDGGSTDKTVEILQEYTPLFKRKNI 60
MRISLITTVKNEENSIRAFLESILQQSRPPDEFIIVDGGSTDKTVEILQEYTPLFKRKNI
Sbjct: 1 MRISLITTVKNEENSIRAFLESILQQSRPPDEFIIVDGGSTDKTVEILQEYTPLFKRKNI 60
Query: 61 IYKIIVKKGANIAKGRNIAISNSSGDIIACTDAGCVLSKAWLEEIARSFEQDPSVDIVSG 120
IYKIIVKKGANIAKGRNIAISNSSGDIIACTDAGCVLSKAWLEEIARSFEQDPSVDIVSG
Sbjct: 61 IYKIIVKKGANIAKGRNIAISNSSGDIIACTDAGCVLSKAWLEEIARSFEQDPSVDIVSG 120
Query: 121 WYEPLATSKFEEIVAEITYPKLKKVLRNPSKFLPSSRSIAFKKKCWKKVGGYPEWLYTAE 180
WYEPLATSKFEEIVAEITYPKLKKVLRNPSKFLPSSRSIAFKKKCWKKVGGYPEWLYTAE
Sbjct: 121 WYEPLATSKFEEIVAEITYPKLKKVLRNPSKFLPSSRSIAFKKKCWKKVGGYPEWLYTAE 180
Query: 181 DTLYDILLKRAGCKFVFNPNAVVYWKVRENLRKLFRQYYNYAKGDGEANLFFWRYFLVCY 240
DTLYDILLKRAGCKFVFNPNAVVYWKVRENLRKLFRQYYNYAKGDGEANLFFWRYFLVCY
Sbjct: 181 DTLYDILLKRAGCKFVFNPNAVVYWKVRENLRKLFRQYYNYAKGDGEANLFFWRYFLVCY 240
Query: 241 FPIIAILISLIYWRTNNVSPLLLGIIYLTGLISYLFGEVIYRGGSVRKILVNLPLALIIE 300
FPIIAILISLIYWRTNNVSPLLLGIIYLTGLISYLFGEVIYRGGSVRKILVNLPLALIIE
Sbjct: 241 FPIIAILISLIYWRTNNVSPLLLGIIYLTGLISYLFGEVIYRGGSVRKILVNLPLALIIE 300
Query: 301 ITILVARTIGYTYGFLKRFKYKKTTKELTRL 331
ITILVARTIGYTYGFLKRFKYKKTTKELTRL
Sbjct: 301 ITILVARTIGYTYGFLKRFKYKKTTKELTRL 331
>emb|CAC12176.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 256
Score = 82.7 bits (201), Expect = 6e-15
Identities = 64/223 (28%), Positives = 102/223 (45%), Gaps = 33/223 (14%)
Query: 4 SLITTVKNEENSIRAFLESILQQSRPPDEFIIVDGGSTDKTVEILQEYTPLFKRKNIIYK 63
S++ TVKNE ++R LESI + E ++VD STD T +I++ Y R + +
Sbjct: 7 SIVVTVKNEGKNLRELLESIEKNDFTNFETVVVDDLSTDDTEDIVKSY-----RFTVYKR 61
Query: 64 IIVKKGANIAKGRNIAISNSSGDIIACTDAGCVLSKAWLEEIARSFEQDPSVDIVSGWYE 123
I +G +GRNI + S I TD +S+ W +SG
Sbjct: 62 IACSRG----EGRNIGVDLSRYGYILFTDGDAKVSEHW----------------ISGMVS 101
Query: 124 PLATSKFEEIVAEITYPKLKKVLRNPSKFL-------PSSRSIAFKKKCWKKVGGYPEWL 176
LA + ++ Y ++ ++ K S ++A++K ++++GG+
Sbjct: 102 ALAAGN-DAVIGNTLYTGKRRYMQERVKIFLEGIEVTAPSVNLAYRKDRFRQLGGFDPKF 160
Query: 177 YTAEDTLYDILLKRAGCKFVFNPNAVVYWKVRENLRKLFRQYY 219
TAED +I +AG +F + VVY KVRENL RQ Y
Sbjct: 161 VTAEDIDLNIRAVKAGFRFATCDSCVVYAKVRENLASFLRQAY 203
>gb|AAK43339.1| Glycosyltransferase, putative [Sulfolobus solfataricus]
Length = 349
Score = 81.9 bits (199), Expect = 1e-14
Identities = 91/318 (28%), Positives = 149/318 (46%), Gaps = 37/318 (11%)
Query: 5 LITTVKNEENSIRAFLESI--LQQSRPPDEFIIVDGGSTDKTVEILQEYTPLFKRKNIIY 62
+I VKNEE + L+ + L+ + E I+V+ GSTD+T +I +EY K N+I
Sbjct: 1 MIVPVKNEERVLPRLLDRLVNLEYDKSKYEIIVVEDGSTDRTFQICKEYE--IKYNNLIR 58
Query: 63 KIIVKKGANIAKGR----NIAISNSSGDIIACTDAGCVLSKAWLEEIARSFEQDPSVDIV 118
+ + AN+ G+ N A+ S G+II D V LE + FE D +V V
Sbjct: 59 CYSLPR-ANVPNGKSRALNFALRISKGEIIGIFDGDTVPRLDILEYVEPKFE-DITVGAV 116
Query: 119 SGWYEPL-----ATSKF---EEIVAEITYPKLKKVLRNPSKFLPSSRSIAF-KKKCWKKV 169
G P+ TS+ EE++ E + KV F+P + +F +K ++
Sbjct: 117 QGKLVPINVRESVTSRLAAIEELIYEYSIAGRAKV----GLFVPIEGTCSFIRKSIIMEL 172
Query: 170 GGYPEWLYTAEDTLYDILLKRAGCKFVFNPNAVVYWKVRENLRKLFRQYYNYAKGDGEAN 229
GG+ E+ T ED + + GCK V++P + + +V +LR L RQ + +G E
Sbjct: 173 GGWNEYSLT-EDLDISLKIVNKGCKIVYSPTTISWREVPVSLRVLIRQRLRWYRGHLEVQ 231
Query: 230 LFFWRYFLVCYFPIIAILISLIYWRTNNVSPLLLGIIYLTGLISYLFGEVIYRGGSVRKI 289
L R + I I+++ + N V+ L+ ++Y + L Y+ V
Sbjct: 232 LGKLRKIDLRIIDGILIVLTPFFMVLNLVNYSLV-LVYSSSL--YI----------VAAS 278
Query: 290 LVNLPLALIIEITILVAR 307
LV+L L + + IL+AR
Sbjct: 279 LVSLASLLSLLLIILIAR 296
>pir||G75005 hyaluronan synthase related PAB1314 - Pyrococcus abyssi (strain
Orsay) >gi|5458999|emb|CAB50485.1| (AJ248288) HYALURONAN
SYNTHASE RELATED [Pyrococcus abyssi]
Length = 350
Score = 75.3 bits (182), Expect = 9e-13
Identities = 85/330 (25%), Positives = 158/330 (47%), Gaps = 31/330 (9%)
Query: 2 RISLITTVKNEENSIRAFLESILQQSRPPDEFIIVDGGSTDKTVEILQEYTPLFKRKNII 61
++S+I NEE +I+ +++ L Q P +E I+VD GS D T E +E K+
Sbjct: 37 KVSVIIPAYNEEENIKKAIKAALSQDYPVEEVIVVDDGSEDGTYEKAKEV------KDER 90
Query: 62 YKIIVKKGANIAKGRNIAISNSSGDIIACTDAGCVLSKAWLEEIARSFEQDPSVDIVS-G 120
K+I + A N + + G++I TDA +S+ + + R E+ S D+V+ G
Sbjct: 91 VKVIRIEHKGKAGAINEGLKLAKGEVIVVTDADSFMSR---DAVRRLVERFHSEDVVAVG 147
Query: 121 WYEPLATSKFEEIVAEITYPKL---KKVLRNPSKFLPSSRSIAFKKKCWKKVGGYPEWLY 177
+ F + +I + ++ ++ L AF+++ +++GG+ L
Sbjct: 148 GQIRVIVDSFLAFIQDIEHLRIAMYRRAKELEDLTLAPGPLSAFRREALERIGGFVNSL- 206
Query: 178 TAEDTLYDILLKRAGCKFVFNPNAVVYWKVRENLRKLFRQYYNYAKGDGEANLFFWRYFL 237
ED LK+ G K V++P A ++ ++ L +L+RQ + GD +++ +
Sbjct: 207 -VEDYATTKALKKFG-KVVYSPKAKLFTRMPLTLGELWRQRRRWFLGD-LSHVDAKDIIM 263
Query: 238 VCYFPIIA---ILISLIYWRTNNVSPLLLGIIY--LTGLISYLFGEVIYRGGSVRKILVN 292
+ IIA I + +I+ + + LLL I++ LT L+ VI+ GGS+ + L+
Sbjct: 264 LILGDIIAFLDIFLPVIFIKYGAFALLLLFILFEILTMLV-----PVIFEGGSITEALL- 317
Query: 293 LPLALIIEITILVARTIGYTYGFLKRFKYK 322
P+AL+ + ++ I YG+ K K
Sbjct: 318 FPIALMFLASFYLSLHI---YGYAVTLKNK 344
>pir||A71157 hypothetical protein PH0456 - Pyrococcus horikoshii
>gi|3256859|dbj|BAA29542.1| (AP000002) 314aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 314
Score = 72.6 bits (175), Expect = 6e-12
Identities = 80/332 (24%), Positives = 146/332 (43%), Gaps = 28/332 (8%)
Query: 3 ISLITTVKNEENSIRAFLESILQQSRPPDEFIIVDGGSTDKTVEILQEYTPLFKRKNIIY 62
+S+I NEE +I+ +++ L Q P E I+VD GS D T E +E K+
Sbjct: 1 MSIIIPAYNEEENIKRAIKAALSQDYPVSEVIVVDDGSEDGTYERAKEI------KDHRL 54
Query: 63 KIIVKKGANIAKGRNIAISNSSGDIIACTDAGCVLSKAWLEEIARSFEQDPSVDIVSGWY 122
K++ A N + + G +I TDA +SK + + F D V + G
Sbjct: 55 KVLKIDHRGKAGAINEGLKIAKGSVIVTTDADSFMSKDAVRRLVERFYSDDVVAV--GGQ 112
Query: 123 EPLATSKFEEIVAEITYPKLK-----KVLRNPSKFLPSSRSIAFKKKCWKKVGGYPEWLY 177
+ F +V +I + ++ K L N S L AF++ +K+GG +
Sbjct: 113 IRVIVESFMTLVQDIEHLRIAMYRRGKELENLS--LAPGPLSAFRRDVLEKIGGIQRSI- 169
Query: 178 TAEDTLYDILLKRAGCKFVFNPNAVVYWKVRENLRKLFRQYYNYAKGDGEANLF--FWRY 235
ED ++K+ G + V+ P A +Y ++ LR L+RQ + GD + +
Sbjct: 170 -VEDYATTKIVKKYG-RVVYAPKAKLYTRMPITLRDLWRQRKRWFLGDLQHHNLNDLLNL 227
Query: 236 FLVCYFPIIAILISLIYWRTNNVSPLLLGIIY--LTGLISYLFGEVIYRGGSVRKILVNL 293
L ++ +++ I+ + PLL +++ +T +I+ VI+ GGS+ + L+
Sbjct: 228 LLGDVIALLDVILPFIFLLEGSYLPLLAFVMFEVITMVIA-----VIWEGGSLIEALLFP 282
Query: 294 PLALIIEITILVARTIGY-TYGFLKRFKYKKT 324
+ + + L GY YG ++ ++
Sbjct: 283 VVLWFLALFYLSLHLYGYAVYGLKSLLRFTRS 314
>gb|AAD12967.1| (AF078135) unknown [Leptospira borgpetersenii]
Length = 281
Score = 68.7 bits (165), Expect = 9e-11
Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 14/212 (6%)
Query: 3 ISLITTVKNEENSIRAFLESILQQSRPPDEFIIVDGGSTDK-TVEILQEYTPLFKRKNII 61
+S++ N I +ESIL+Q E IIVD GS D T+ IL+EY +
Sbjct: 5 VSIVIPCYNYGRYIHETVESILRQRYKYWEVIIVDDGSNDPFTISILEEYK---NKSGFT 61
Query: 62 YKIIVKKGANIAKGRNIAISNSSGDIIACTDAGCVLSKAWLEEIARSFEQDPSVDIVSGW 121
I + G + A RNI I + G+ I D+ ++ + +L E ++E++PS+ IV
Sbjct: 62 VLSIPRSGPSTA--RNIGIDTAQGEFILPLDSDDMIHEDYLLEAISAYEKNPSLGIVYCE 119
Query: 122 YEPLATSKFEEIVAEITYPKLKKVLRNPSKFLPSSRSIAFKKKCWKKVGGYPEWLYTA-E 180
E + K + + E +P +L + F+ S FKK WK+VGG+ E + E
Sbjct: 120 AEFFGSIKGKWNLPEYRFP---NILLDNCIFV----SAVFKKSDWKEVGGFNENMKNEWE 172
Query: 181 DTLYDILLKRAGCKFVFNPNAVVYWKVRENLR 212
D + + L G K P + Y+++ + R
Sbjct: 173 DYDFWLSLIEKGGKVYRIPKVLFYYRIGHSSR 204
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.141 0.424
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125059769
Number of Sequences: 2977
Number of extensions: 5388363
Number of successful extensions: 13625
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 13613
Number of HSP's gapped (non-prelim): 6
length of query: 331
length of database: 189,106,746
effective HSP length: 53
effective length of query: 278
effective length of database: 157,386,935
effective search space: 43753567930
effective search space used: 43753567930
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 165 (68.7 bits)