BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0802 (PAB0802) DE:Hypothetical protein
(201 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75101 hypothetical protein PAB0802 - Pyrococcus abyssi (st... 414 e-115
pir||E71085 hypothetical protein PH0946 - Pyrococcus horikoshii ... 360 8e-99
pir||A75113 hypothetical protein PAB0485 - Pyrococcus abyssi (st... 107 1e-22
pir||C71020 phaE homolog - Pyrococcus horikoshii >gi|3257880|dbj... 104 8e-22
pir||C75116 hypothetical protein PAB1884 - Pyrococcus abyssi (st... 82 5e-15
pir||E71016 hypothetical protein PH1427 - Pyrococcus horikoshii ... 81 9e-15
pir||G75059 hypothetical protein PAB1401 - Pyrococcus abyssi (st... 81 9e-15
pir||C72280 conserved hypothetical protein - Thermotoga maritima... 79 5e-14
>pir||D75101 hypothetical protein PAB0802 - Pyrococcus abyssi (strain Orsay)
>gi|5458625|emb|CAB50113.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 201
Score = 414 bits (1052), Expect = e-115
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MTRMHLYLRKRVEEVKERYRYEIYEMQKLPSWERFVLTWVTLMAFWLGISCDLSYRGVTL 60
MTRMHLYLRKRVEEVKERYRYEIYEMQKLPSWERFVLTWVTLMAFWLGISCDLSYRGVTL
Sbjct: 1 MTRMHLYLRKRVEEVKERYRYEIYEMQKLPSWERFVLTWVTLMAFWLGISCDLSYRGVTL 60
Query: 61 GAITTAIISFYLRDFLTDDVRHSKHLAWKILYFALIYFPQYLMIMAFRLLESNIKVARHA 120
GAITTAIISFYLRDFLTDDVRHSKHLAWKILYFALIYFPQYLMIMAFRLLESNIKVARHA
Sbjct: 61 GAITTAIISFYLRDFLTDDVRHSKHLAWKILYFALIYFPQYLMIMAFRLLESNIKVARHA 120
Query: 121 ILMDINPGIVKIKTTLHSDTGITILANSITLTPGTLTIDVAKKLDGTYLYVHWIDVETLN 180
ILMDINPGIVKIKTTLHSDTGITILANSITLTPGTLTIDVAKKLDGTYLYVHWIDVETLN
Sbjct: 121 ILMDINPGIVKIKTTLHSDTGITILANSITLTPGTLTIDVAKKLDGTYLYVHWIDVETLN 180
Query: 181 VERAGELIKGDIEEWLKKVFW 201
VERAGELIKGDIEEWLKKVFW
Sbjct: 181 VERAGELIKGDIEEWLKKVFW 201
>pir||E71085 hypothetical protein PH0946 - Pyrococcus horikoshii
>gi|3257360|dbj|BAA30043.1| (AP000004) 201aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 201
Score = 360 bits (914), Expect = 8e-99
Identities = 168/201 (83%), Positives = 186/201 (91%)
Query: 1 MTRMHLYLRKRVEEVKERYRYEIYEMQKLPSWERFVLTWVTLMAFWLGISCDLSYRGVTL 60
MTR+HLYLRKRVEEVKERYRYEIYE QKL WERF +TW+ L+ FWLGI+ DLSYRG+ L
Sbjct: 1 MTRIHLYLRKRVEEVKERYRYEIYEKQKLSPWERFAITWLILLVFWLGITGDLSYRGLIL 60
Query: 61 GAITTAIISFYLRDFLTDDVRHSKHLAWKILYFALIYFPQYLMIMAFRLLESNIKVARHA 120
G TTAIIS+YLRDFLT+D+RHSKHLAWKILYFA IY PQYL+IM FRLLESN+KVA+HA
Sbjct: 61 GFPTTAIISYYLRDFLTEDIRHSKHLAWKILYFAFIYLPQYLIIMGFRLLESNLKVAKHA 120
Query: 121 ILMDINPGIVKIKTTLHSDTGITILANSITLTPGTLTIDVAKKLDGTYLYVHWIDVETLN 180
+LMDINPGIVKI+T LHSDTGITILANSITLTPGTLT+DV KKLDGTYLYVHWIDVETLN
Sbjct: 121 LLMDINPGIVKIRTDLHSDTGITILANSITLTPGTLTLDVVKKLDGTYLYVHWIDVETLN 180
Query: 181 VERAGELIKGDIEEWLKKVFW 201
VE+AGE+IKGDIEEWLKK+FW
Sbjct: 181 VEKAGEIIKGDIEEWLKKMFW 201
>pir||A75113 hypothetical protein PAB0485 - Pyrococcus abyssi (strain Orsay)
>gi|5458129|emb|CAB49618.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 168
Score = 107 bits (264), Expect = 1e-22
Identities = 64/169 (37%), Positives = 99/169 (57%), Gaps = 12/169 (7%)
Query: 34 RFVLTWVTLMAFWLGISCDLSYRGVTLGAITTAIISFYLRDFLTDDVRHSKHLAWKILYF 93
+F+ T++ WL ++ L + +T+GAI +AI+S D T R +L + + +
Sbjct: 9 KFLYTFIVTFIIWLFLTASLDPQELTIGAIFSAIVSALTYDIFT--TRGLSNLHPRRIAY 66
Query: 94 ALIYFPQYLMIMAFRLLESNIKVARHAI--LMDINPGIVKIKTTLHSDTGITILANSITL 151
A+IY P +L M +++N+ VA + INPGIV+ +T L ++ G LANSITL
Sbjct: 67 AIIYVPYFLWAM----IKANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLALANSITL 122
Query: 152 TPGTLTIDVAKKLDGTYLYVHWIDVETLNVERAGELIKGDIEEWLKKVF 200
TPGT+T+DV DG ++HWIDV+ +VE A E I E++LK +F
Sbjct: 123 TPGTITLDV----DGDKYFIHWIDVKDSSVEGASENITRPFEKFLKVIF 167
>pir||C71020 phaE homolog - Pyrococcus horikoshii >gi|3257880|dbj|BAA30563.1|
(AP000006) 174aa long hypothetical phaE product
[Pyrococcus horikoshii]
Length = 174
Score = 104 bits (257), Expect = 8e-22
Identities = 60/169 (35%), Positives = 100/169 (58%), Gaps = 12/169 (7%)
Query: 34 RFVLTWVTLMAFWLGISCDLSYRGVTLGAITTAIISFYLRDFLTDDVRHSKHLAWKILYF 93
R++ T++ ++ WL ++ L + + +G I +AI++ + D T R +L + + +
Sbjct: 15 RYLYTFIVVLIIWLFLTASLDPQELIVGIIFSAIVAGFTYDIFT--TRGLSNLHPRRIAY 72
Query: 94 ALIYFPQYLMIMAFRLLESNIKVARHAI--LMDINPGIVKIKTTLHSDTGITILANSITL 151
A+IY P +L M +++N+ VA + INPGIV+ KT L ++ G LANSITL
Sbjct: 73 AIIYIPYFLWAM----IKANLDVAYRVLHPKRPINPGIVECKTELKNEVGKLALANSITL 128
Query: 152 TPGTLTIDVAKKLDGTYLYVHWIDVETLNVERAGELIKGDIEEWLKKVF 200
TPGT+T+D+ DG ++HWIDV+ ++E A E I E++LK +F
Sbjct: 129 TPGTITLDI----DGDRYFIHWIDVKDSSIEGASEHITKPFEKFLKVIF 173
>pir||C75116 hypothetical protein PAB1884 - Pyrococcus abyssi (strain Orsay)
>gi|5458155|emb|CAB49644.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 167
Score = 81.9 bits (199), Expect = 5e-15
Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 13/169 (7%)
Query: 32 WERFVLTWVTLMAFWLGISCDLSYRGVTLGAITTAIISFYLRDFLTDDVRHSKHLAWKIL 91
W F+ W+ L A G+ S + + G I +AI+ + R+ + + + +L
Sbjct: 9 WSYFM--WLVLTAGSKGLLW--SPQELIAGLIFSAIVGYATRNIIGEKAGRFLNPIKLVL 64
Query: 92 YFALIYFPQYLMIMAFRLLESNIKVARHAILMDINPGIVKIKTTLHSDTGITILANSITL 151
+ A Y ++ + ++++N+ VA I I PGIV++ L +D TIL+NSITL
Sbjct: 65 FIA------YAPVLFWGMVKANLDVAYRVITGKIRPGIVRVPVNLENDAQYTILSNSITL 118
Query: 152 TPGTLTIDVAKKLDGTYLYVHWIDV-ETLNVERAGELIKGDIEEWLKKV 199
TPGTLTI+ + + LYVHWI++ E L ++ E + G E+W +++
Sbjct: 119 TPGTLTIEASP--EEKALYVHWINIPEGLEWPKSSEPVSGPFEKWARRL 165
>pir||E71016 hypothetical protein PH1427 - Pyrococcus horikoshii
>gi|3257850|dbj|BAA30533.1| (AP000006) 167aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 167
Score = 81.1 bits (197), Expect = 9e-15
Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 15/170 (8%)
Query: 32 WERFVLTWVTLMAFWLGISCDLSYRGVTLGAITTAIISFYLRDFLTDDV-RHSKHLAWKI 90
W F+ W+ L A G+ + + + G I +AI+ + R+ + + R + W
Sbjct: 9 WSYFM--WLILTAGSKGLLWNS--QELIAGLIFSAIVGYATRNIIGERASRFLNPVKW-- 62
Query: 91 LYFALIYFPQYLMIMAFRLLESNIKVARHAILMDINPGIVKIKTTLHSDTGITILANSIT 150
I F Y ++ + ++++N+ VA I I PGIVK+ L +D TIL+NSIT
Sbjct: 63 -----ILFIAYAPVLFWGMIKANLDVAYRVITGKIRPGIVKVPVNLENDAQYTILSNSIT 117
Query: 151 LTPGTLTIDVAKKLDGTYLYVHWIDV-ETLNVERAGELIKGDIEEWLKKV 199
LTPGTLTI+ + + LYVHWI++ + L + E + G E+W +++
Sbjct: 118 LTPGTLTIEASP--EEKVLYVHWINIPKGLEWPESSEPVSGPFEKWARRL 165
>pir||G75059 hypothetical protein PAB1401 - Pyrococcus abyssi (strain Orsay)
>gi|5458885|emb|CAB50372.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 161
Score = 81.1 bits (197), Expect = 9e-15
Identities = 51/166 (30%), Positives = 88/166 (52%), Gaps = 13/166 (7%)
Query: 35 FVLTWVTLMAFWLGISCDLSYRGVTLGAITTAIISFYLRDFLTDDVRHSKHLAWKILYFA 94
F+L ++T + F I G+ +G I ++ YL + DD + + W +
Sbjct: 8 FILAFLTYVLFTGSIRTFDLITGLIVGIIVGLLMGNYL---VKDDSKALNPVRW---LWG 61
Query: 95 LIYFPQYLMIMAFRLLESNIKVARHAILMDINPGIVKIKTTLHSDTGITILANSITLTPG 154
++YF Y+++ R +++ V + + NPGIVK+ + +D T++A SIT TPG
Sbjct: 62 VVYFLWYMLVAETR---AHLDVIVRTLTGNYNPGIVKVPIDVKTDYAKTLIATSITNTPG 118
Query: 155 TLTIDVAKKLDGTYLYVHWIDVETLNVERAGELIKGDIEEWLKKVF 200
T+ +D LD ++YV+WI+V T E A ++I D E + KK+F
Sbjct: 119 TVVVD----LDDKFMYVNWINVTTTEPEEAKKVICEDFERYAKKIF 160
>pir||C72280 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981758|gb|AAD36280.1|AE001778_1 (AE001778)
conserved hypothetical protein [Thermotoga maritima]
Length = 155
Score = 78.8 bits (191), Expect = 5e-14
Identities = 52/164 (31%), Positives = 87/164 (52%), Gaps = 15/164 (9%)
Query: 39 WVTLMAFWLGISCDLSYRGVTLGAITTAIISFYLRDFLTDDVRHSKHLAWKILYFALIYF 98
++T + WL I+ SY + G + + +S R + +R L +I+ +A+++
Sbjct: 4 FLTSLILWLVIT-RFSYSELLAGIVVSLAVSLIFRKY--HGIRFDAKLPLRIVRYAVMFL 60
Query: 99 PQYLMIMAFRLLESNIKVARHAI--LMDINPGIVKIKTTLHSDTGITILANSITLTPGTL 156
P +++ M +++NI VA + + + PG V++KT L D LANSITLTPGTL
Sbjct: 61 PIFIIEM----VKANIDVALRVLNPRLPLKPGFVELKTNLKKDASRLFLANSITLTPGTL 116
Query: 157 TIDVAKKLDGTYLYVHWIDVETLNVERAGELIKGDIEEWLKKVF 200
++DV ++VHWI+V+ + E I G E +K VF
Sbjct: 117 SVDV----KDDRIFVHWIEVK--STEEKERYISGKFERLIKGVF 154
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.141 0.439
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75109647
Number of Sequences: 2977
Number of extensions: 2872546
Number of successful extensions: 8806
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8796
Number of HSP's gapped (non-prelim): 8
length of query: 201
length of database: 189,106,746
effective HSP length: 50
effective length of query: 151
effective length of database: 159,182,396
effective search space: 24036541796
effective search space used: 24036541796
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 163 (67.9 bits)