BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0802 (PAB0802) DE:Hypothetical protein
         (201 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75101 hypothetical protein PAB0802 - Pyrococcus abyssi (st...   414  e-115
pir||E71085 hypothetical protein PH0946 - Pyrococcus horikoshii ...   360  8e-99
pir||A75113 hypothetical protein PAB0485 - Pyrococcus abyssi (st...   107  1e-22
pir||C71020 phaE homolog - Pyrococcus horikoshii >gi|3257880|dbj...   104  8e-22
pir||C75116 hypothetical protein PAB1884 - Pyrococcus abyssi (st...    82  5e-15
pir||E71016 hypothetical protein PH1427 - Pyrococcus horikoshii ...    81  9e-15
pir||G75059 hypothetical protein PAB1401 - Pyrococcus abyssi (st...    81  9e-15
pir||C72280 conserved hypothetical protein - Thermotoga maritima...    79  5e-14

>pir||D75101 hypothetical protein PAB0802 - Pyrococcus abyssi (strain Orsay)
           >gi|5458625|emb|CAB50113.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 201
           
 Score =  414 bits (1052), Expect = e-115
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MTRMHLYLRKRVEEVKERYRYEIYEMQKLPSWERFVLTWVTLMAFWLGISCDLSYRGVTL 60
           MTRMHLYLRKRVEEVKERYRYEIYEMQKLPSWERFVLTWVTLMAFWLGISCDLSYRGVTL
Sbjct: 1   MTRMHLYLRKRVEEVKERYRYEIYEMQKLPSWERFVLTWVTLMAFWLGISCDLSYRGVTL 60

Query: 61  GAITTAIISFYLRDFLTDDVRHSKHLAWKILYFALIYFPQYLMIMAFRLLESNIKVARHA 120
           GAITTAIISFYLRDFLTDDVRHSKHLAWKILYFALIYFPQYLMIMAFRLLESNIKVARHA
Sbjct: 61  GAITTAIISFYLRDFLTDDVRHSKHLAWKILYFALIYFPQYLMIMAFRLLESNIKVARHA 120

Query: 121 ILMDINPGIVKIKTTLHSDTGITILANSITLTPGTLTIDVAKKLDGTYLYVHWIDVETLN 180
           ILMDINPGIVKIKTTLHSDTGITILANSITLTPGTLTIDVAKKLDGTYLYVHWIDVETLN
Sbjct: 121 ILMDINPGIVKIKTTLHSDTGITILANSITLTPGTLTIDVAKKLDGTYLYVHWIDVETLN 180

Query: 181 VERAGELIKGDIEEWLKKVFW 201
           VERAGELIKGDIEEWLKKVFW
Sbjct: 181 VERAGELIKGDIEEWLKKVFW 201


>pir||E71085 hypothetical protein PH0946 - Pyrococcus horikoshii
           >gi|3257360|dbj|BAA30043.1| (AP000004) 201aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 201
           
 Score =  360 bits (914), Expect = 8e-99
 Identities = 168/201 (83%), Positives = 186/201 (91%)

Query: 1   MTRMHLYLRKRVEEVKERYRYEIYEMQKLPSWERFVLTWVTLMAFWLGISCDLSYRGVTL 60
           MTR+HLYLRKRVEEVKERYRYEIYE QKL  WERF +TW+ L+ FWLGI+ DLSYRG+ L
Sbjct: 1   MTRIHLYLRKRVEEVKERYRYEIYEKQKLSPWERFAITWLILLVFWLGITGDLSYRGLIL 60

Query: 61  GAITTAIISFYLRDFLTDDVRHSKHLAWKILYFALIYFPQYLMIMAFRLLESNIKVARHA 120
           G  TTAIIS+YLRDFLT+D+RHSKHLAWKILYFA IY PQYL+IM FRLLESN+KVA+HA
Sbjct: 61  GFPTTAIISYYLRDFLTEDIRHSKHLAWKILYFAFIYLPQYLIIMGFRLLESNLKVAKHA 120

Query: 121 ILMDINPGIVKIKTTLHSDTGITILANSITLTPGTLTIDVAKKLDGTYLYVHWIDVETLN 180
           +LMDINPGIVKI+T LHSDTGITILANSITLTPGTLT+DV KKLDGTYLYVHWIDVETLN
Sbjct: 121 LLMDINPGIVKIRTDLHSDTGITILANSITLTPGTLTLDVVKKLDGTYLYVHWIDVETLN 180

Query: 181 VERAGELIKGDIEEWLKKVFW 201
           VE+AGE+IKGDIEEWLKK+FW
Sbjct: 181 VEKAGEIIKGDIEEWLKKMFW 201


>pir||A75113 hypothetical protein PAB0485 - Pyrococcus abyssi (strain Orsay)
           >gi|5458129|emb|CAB49618.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 168
           
 Score =  107 bits (264), Expect = 1e-22
 Identities = 64/169 (37%), Positives = 99/169 (57%), Gaps = 12/169 (7%)

Query: 34  RFVLTWVTLMAFWLGISCDLSYRGVTLGAITTAIISFYLRDFLTDDVRHSKHLAWKILYF 93
           +F+ T++     WL ++  L  + +T+GAI +AI+S    D  T   R   +L  + + +
Sbjct: 9   KFLYTFIVTFIIWLFLTASLDPQELTIGAIFSAIVSALTYDIFT--TRGLSNLHPRRIAY 66

Query: 94  ALIYFPQYLMIMAFRLLESNIKVARHAI--LMDINPGIVKIKTTLHSDTGITILANSITL 151
           A+IY P +L  M    +++N+ VA   +     INPGIV+ +T L ++ G   LANSITL
Sbjct: 67  AIIYVPYFLWAM----IKANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLALANSITL 122

Query: 152 TPGTLTIDVAKKLDGTYLYVHWIDVETLNVERAGELIKGDIEEWLKKVF 200
           TPGT+T+DV    DG   ++HWIDV+  +VE A E I    E++LK +F
Sbjct: 123 TPGTITLDV----DGDKYFIHWIDVKDSSVEGASENITRPFEKFLKVIF 167


>pir||C71020 phaE homolog - Pyrococcus horikoshii >gi|3257880|dbj|BAA30563.1|
           (AP000006) 174aa long hypothetical phaE product
           [Pyrococcus horikoshii]
           Length = 174
           
 Score =  104 bits (257), Expect = 8e-22
 Identities = 60/169 (35%), Positives = 100/169 (58%), Gaps = 12/169 (7%)

Query: 34  RFVLTWVTLMAFWLGISCDLSYRGVTLGAITTAIISFYLRDFLTDDVRHSKHLAWKILYF 93
           R++ T++ ++  WL ++  L  + + +G I +AI++ +  D  T   R   +L  + + +
Sbjct: 15  RYLYTFIVVLIIWLFLTASLDPQELIVGIIFSAIVAGFTYDIFT--TRGLSNLHPRRIAY 72

Query: 94  ALIYFPQYLMIMAFRLLESNIKVARHAI--LMDINPGIVKIKTTLHSDTGITILANSITL 151
           A+IY P +L  M    +++N+ VA   +     INPGIV+ KT L ++ G   LANSITL
Sbjct: 73  AIIYIPYFLWAM----IKANLDVAYRVLHPKRPINPGIVECKTELKNEVGKLALANSITL 128

Query: 152 TPGTLTIDVAKKLDGTYLYVHWIDVETLNVERAGELIKGDIEEWLKKVF 200
           TPGT+T+D+    DG   ++HWIDV+  ++E A E I    E++LK +F
Sbjct: 129 TPGTITLDI----DGDRYFIHWIDVKDSSIEGASEHITKPFEKFLKVIF 173


>pir||C75116 hypothetical protein PAB1884 - Pyrococcus abyssi (strain Orsay)
           >gi|5458155|emb|CAB49644.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 167
           
 Score = 81.9 bits (199), Expect = 5e-15
 Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 13/169 (7%)

Query: 32  WERFVLTWVTLMAFWLGISCDLSYRGVTLGAITTAIISFYLRDFLTDDVRHSKHLAWKIL 91
           W  F+  W+ L A   G+    S + +  G I +AI+ +  R+ + +      +    +L
Sbjct: 9   WSYFM--WLVLTAGSKGLLW--SPQELIAGLIFSAIVGYATRNIIGEKAGRFLNPIKLVL 64

Query: 92  YFALIYFPQYLMIMAFRLLESNIKVARHAILMDINPGIVKIKTTLHSDTGITILANSITL 151
           + A      Y  ++ + ++++N+ VA   I   I PGIV++   L +D   TIL+NSITL
Sbjct: 65  FIA------YAPVLFWGMVKANLDVAYRVITGKIRPGIVRVPVNLENDAQYTILSNSITL 118

Query: 152 TPGTLTIDVAKKLDGTYLYVHWIDV-ETLNVERAGELIKGDIEEWLKKV 199
           TPGTLTI+ +   +   LYVHWI++ E L   ++ E + G  E+W +++
Sbjct: 119 TPGTLTIEASP--EEKALYVHWINIPEGLEWPKSSEPVSGPFEKWARRL 165


>pir||E71016 hypothetical protein PH1427 - Pyrococcus horikoshii
           >gi|3257850|dbj|BAA30533.1| (AP000006) 167aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 167
           
 Score = 81.1 bits (197), Expect = 9e-15
 Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 15/170 (8%)

Query: 32  WERFVLTWVTLMAFWLGISCDLSYRGVTLGAITTAIISFYLRDFLTDDV-RHSKHLAWKI 90
           W  F+  W+ L A   G+  +   + +  G I +AI+ +  R+ + +   R    + W  
Sbjct: 9   WSYFM--WLILTAGSKGLLWNS--QELIAGLIFSAIVGYATRNIIGERASRFLNPVKW-- 62

Query: 91  LYFALIYFPQYLMIMAFRLLESNIKVARHAILMDINPGIVKIKTTLHSDTGITILANSIT 150
                I F  Y  ++ + ++++N+ VA   I   I PGIVK+   L +D   TIL+NSIT
Sbjct: 63  -----ILFIAYAPVLFWGMIKANLDVAYRVITGKIRPGIVKVPVNLENDAQYTILSNSIT 117

Query: 151 LTPGTLTIDVAKKLDGTYLYVHWIDV-ETLNVERAGELIKGDIEEWLKKV 199
           LTPGTLTI+ +   +   LYVHWI++ + L    + E + G  E+W +++
Sbjct: 118 LTPGTLTIEASP--EEKVLYVHWINIPKGLEWPESSEPVSGPFEKWARRL 165


>pir||G75059 hypothetical protein PAB1401 - Pyrococcus abyssi (strain Orsay)
           >gi|5458885|emb|CAB50372.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 161
           
 Score = 81.1 bits (197), Expect = 9e-15
 Identities = 51/166 (30%), Positives = 88/166 (52%), Gaps = 13/166 (7%)

Query: 35  FVLTWVTLMAFWLGISCDLSYRGVTLGAITTAIISFYLRDFLTDDVRHSKHLAWKILYFA 94
           F+L ++T + F   I       G+ +G I   ++  YL   + DD +    + W    + 
Sbjct: 8   FILAFLTYVLFTGSIRTFDLITGLIVGIIVGLLMGNYL---VKDDSKALNPVRW---LWG 61

Query: 95  LIYFPQYLMIMAFRLLESNIKVARHAILMDINPGIVKIKTTLHSDTGITILANSITLTPG 154
           ++YF  Y+++   R   +++ V    +  + NPGIVK+   + +D   T++A SIT TPG
Sbjct: 62  VVYFLWYMLVAETR---AHLDVIVRTLTGNYNPGIVKVPIDVKTDYAKTLIATSITNTPG 118

Query: 155 TLTIDVAKKLDGTYLYVHWIDVETLNVERAGELIKGDIEEWLKKVF 200
           T+ +D    LD  ++YV+WI+V T   E A ++I  D E + KK+F
Sbjct: 119 TVVVD----LDDKFMYVNWINVTTTEPEEAKKVICEDFERYAKKIF 160


>pir||C72280 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4981758|gb|AAD36280.1|AE001778_1 (AE001778)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 155
           
 Score = 78.8 bits (191), Expect = 5e-14
 Identities = 52/164 (31%), Positives = 87/164 (52%), Gaps = 15/164 (9%)

Query: 39  WVTLMAFWLGISCDLSYRGVTLGAITTAIISFYLRDFLTDDVRHSKHLAWKILYFALIYF 98
           ++T +  WL I+   SY  +  G + +  +S   R +    +R    L  +I+ +A+++ 
Sbjct: 4   FLTSLILWLVIT-RFSYSELLAGIVVSLAVSLIFRKY--HGIRFDAKLPLRIVRYAVMFL 60

Query: 99  PQYLMIMAFRLLESNIKVARHAI--LMDINPGIVKIKTTLHSDTGITILANSITLTPGTL 156
           P +++ M    +++NI VA   +   + + PG V++KT L  D     LANSITLTPGTL
Sbjct: 61  PIFIIEM----VKANIDVALRVLNPRLPLKPGFVELKTNLKKDASRLFLANSITLTPGTL 116

Query: 157 TIDVAKKLDGTYLYVHWIDVETLNVERAGELIKGDIEEWLKKVF 200
           ++DV        ++VHWI+V+  + E     I G  E  +K VF
Sbjct: 117 SVDV----KDDRIFVHWIEVK--STEEKERYISGKFERLIKGVF 154


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.141    0.439 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75109647
Number of Sequences: 2977
Number of extensions: 2872546
Number of successful extensions: 8806
Number of sequences better than 1.0e-10: 8
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8796
Number of HSP's gapped (non-prelim): 8
length of query: 201
length of database: 189,106,746
effective HSP length: 50
effective length of query: 151
effective length of database: 159,182,396
effective search space: 24036541796
effective search space used: 24036541796
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 163 (67.9 bits)