BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0803 (PAB0803) DE:Hypothetical protein
         (103 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75101 hypothetical protein PAB0803 - Pyrococcus abyssi (st...   209  7e-54
sp|O58672|Y944_PYRHO HYPOTHETICAL PROTEIN PH0944 >gi|7518908|pir...   186  8e-47
pir||C75465 conserved hypothetical protein - Deinococcus radiodu...    72  2e-12

>pir||F75101 hypothetical protein PAB0803 - Pyrococcus abyssi (strain Orsay)
           >gi|5458627|emb|CAB50115.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 103
           
 Score =  209 bits (527), Expect = 7e-54
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MIELIPLLFGYSIMFFGALGVVRFPDVYTRLHAATKCDTGGIMGIVLGLSLIVNSWSVRV 60
           MIELIPLLFGYSIMFFGALGVVRFPDVYTRLHAATKCDTGGIMGIVLGLSLIVNSWSVRV
Sbjct: 1   MIELIPLLFGYSIMFFGALGVVRFPDVYTRLHAATKCDTGGIMGIVLGLSLIVNSWSVRV 60

Query: 61  KLIFLLVLIAMINPMISHAIARGAYKMGVKPVGKVDMYAWDNA 103
           KLIFLLVLIAMINPMISHAIARGAYKMGVKPVGKVDMYAWDNA
Sbjct: 61  KLIFLLVLIAMINPMISHAIARGAYKMGVKPVGKVDMYAWDNA 103


>sp|O58672|Y944_PYRHO HYPOTHETICAL PROTEIN PH0944 >gi|7518908|pir||C71085 hypothetical
           protein PH0944 - Pyrococcus horikoshii
           >gi|3257358|dbj|BAA30041.1| (AP000004) 103aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 103
           
 Score =  186 bits (467), Expect = 8e-47
 Identities = 87/102 (85%), Positives = 95/102 (92%)

Query: 1   MIELIPLLFGYSIMFFGALGVVRFPDVYTRLHAATKCDTGGIMGIVLGLSLIVNSWSVRV 60
           M+EL+PLLFGY IMFFGALGVVRFPDVYTRLHAATKCDTGGIMGI+LGLS+IVNSW++R 
Sbjct: 1   MLELLPLLFGYLIMFFGALGVVRFPDVYTRLHAATKCDTGGIMGIILGLSMIVNSWAIRT 60

Query: 61  KLIFLLVLIAMINPMISHAIARGAYKMGVKPVGKVDMYAWDN 102
           KL+ LL+ IAMINPMISHAIARGAYK GVKP  KVDMYAWDN
Sbjct: 61  KLVILLIFIAMINPMISHAIARGAYKGGVKPKVKVDMYAWDN 102


>pir||C75465 conserved hypothetical protein - Deinococcus radiodurans  (strain
           R1) >gi|6458600|gb|AAF10458.1|AE001941_11 (AE001941)
           conserved hypothetical protein [Deinococcus radiodurans]
           Length = 135
           
 Score = 71.8 bits (173), Expect = 2e-12
 Identities = 39/94 (41%), Positives = 58/94 (61%), Gaps = 2/94 (2%)

Query: 5   IPLLFGYSIMFFGALGVVRFPDVYTRLHAATKCDTGGIMGIVLGLSLIVNSWSVRVKLIF 64
           IP+L G   +   A+GVVRFPD+Y+RLHA++K  T G  GI LG++L     +   +LI 
Sbjct: 14  IPILIGAFFVLTAAIGVVRFPDLYSRLHASSKLVTLGSAGIFLGVALSFQESAALTRLIA 73

Query: 65  LLVLIAMINPMISHAIARGAYKMGVKPV--GKVD 96
           +L+   +  P+ ++ IA+ AY  G+ PV  G VD
Sbjct: 74  VLLFQFLTTPLTAYLIAQAAYLQGLPPVLPGGVD 107


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.331    0.146    0.450 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38101445
Number of Sequences: 2977
Number of extensions: 1324733
Number of successful extensions: 4515
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4512
Number of HSP's gapped (non-prelim): 3
length of query: 103
length of database: 189,106,746
effective HSP length: 46
effective length of query: 57
effective length of database: 161,576,344
effective search space: 9209851608
effective search space used: 9209851608
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 159 (66.3 bits)