BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0804 (PAB0804) DE:Hypothetical protein
         (151 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75101 hypothetical protein PAB0804 - Pyrococcus abyssi (st...   288  2e-77
pir||B71085 hypothetical protein PH0943 - Pyrococcus horikoshii ...   196  9e-50

>pir||G75101 hypothetical protein PAB0804 - Pyrococcus abyssi (strain Orsay)
           >gi|5458628|emb|CAB50116.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 151
           
 Score =  288 bits (730), Expect = 2e-77
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 1   MLGTMLSFMIILLALTVVLHRDFLASLIAYSLVGLSFVMLAVLARAPDVALSAIAVGGIV 60
           MLGTMLSFMIILLALTVVLHRDFLASLIAYSLVGLSFVMLAVLARAPDVALSAIAVGGIV
Sbjct: 1   MLGTMLSFMIILLALTVVLHRDFLASLIAYSLVGLSFVMLAVLARAPDVALSAIAVGGIV 60

Query: 61  IGLFIFAYEKVREEGIELPLGLAVVPLAIALLRLRVSVNPGSYYHYIKAWSIGNLVSEIL 120
           IGLFIFAYEKVREEGIELPLGLAVVPLAIALLRLRVSVNPGSYYHYIKAWSIGNLVSEIL
Sbjct: 61  IGLFIFAYEKVREEGIELPLGLAVVPLAIALLRLRVSVNPGSYYHYIKAWSIGNLVSEIL 120

Query: 121 AGWRLYDSVGEALILFSAALGFSLLIRGKKK 151
           AGWRLYDSVGEALILFSAALGFSLLIRGKKK
Sbjct: 121 AGWRLYDSVGEALILFSAALGFSLLIRGKKK 151


>pir||B71085 hypothetical protein PH0943 - Pyrococcus horikoshii
           >gi|3257357|dbj|BAA30040.1| (AP000004) 162aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 162
           
 Score =  196 bits (494), Expect = 9e-50
 Identities = 100/152 (65%), Positives = 122/152 (79%), Gaps = 1/152 (0%)

Query: 1   MLGTMLSFMIILLALTVVLHRDFLASLIAYSLVGLSFVMLAVLARAPDVALSAIAVGGIV 60
           MLG +L  +++ LAL V+LHRDF+ SLI YSL  L F++L +L+ APDVALS I VGGIV
Sbjct: 1   MLGIILEVVMLTLALIVILHRDFMTSLIVYSLTSLVFILLVLLSYAPDVALSGIVVGGIV 60

Query: 61  IGLFIFAYEKVREE-GIELPLGLAVVPLAIALLRLRVSVNPGSYYHYIKAWSIGNLVSEI 119
            GLF+F YE+   E  ++LPLGLAV+PLA ALLR++  VN  SY  Y+KAW+I NLVSEI
Sbjct: 61  TGLFVFGYERAGGECKVKLPLGLAVLPLAFALLRVKFKVNLASYEAYVKAWNINNLVSEI 120

Query: 120 LAGWRLYDSVGEALILFSAALGFSLLIRGKKK 151
           LAGWRLYDSVGEALILFSAALGFSLL+ G+K+
Sbjct: 121 LAGWRLYDSVGEALILFSAALGFSLLMGGRKR 152


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.329    0.145    0.413 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48261762
Number of Sequences: 2977
Number of extensions: 1806353
Number of successful extensions: 9008
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9005
Number of HSP's gapped (non-prelim): 2
length of query: 151
length of database: 189,106,746
effective HSP length: 52
effective length of query: 99
effective length of database: 157,985,422
effective search space: 15640556778
effective search space used: 15640556778
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 161 (67.1 bits)