BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0805 (PAB0805) DE:NADH-QUINONE OXIDOREDUCTASE CHAIN 5
related (EC 1.6.5.3)
         (127 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75101 NADH dehydrogenase (ubiquinone) chain 5 related PAB0...   242  9e-64
pir||A71085 hypothetical protein PH0942 - Pyrococcus horikoshii ...   199  7e-51

>pir||H75101 NADH dehydrogenase (ubiquinone) chain 5 related PAB0805 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5458629|emb|CAB50117.1| (AJ248286) NADH-QUINONE
           OXIDOREDUCTASE CHAIN 5 related (EC 1.6.5.3) [Pyrococcus
           abyssi]
           Length = 127
           
 Score =  242 bits (612), Expect = 9e-64
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MKMSLIARTTSKIVAPFLVTYAAYLILYGAYSPGGGFQAGVILAVAVILLITSHGYKKVK 60
           MKMSLIARTTSKIVAPFLVTYAAYLILYGAYSPGGGFQAGVILAVAVILLITSHGYKKVK
Sbjct: 1   MKMSLIARTTSKIVAPFLVTYAAYLILYGAYSPGGGFQAGVILAVAVILLITSHGYKKVK 60

Query: 61  KRFRGRTVSYLESLSSLGIALLIALVALAYLRPRDDIVTSFNVLVGIKVGAAFVLIFYSL 120
           KRFRGRTVSYLESLSSLGIALLIALVALAYLRPRDDIVTSFNVLVGIKVGAAFVLIFYSL
Sbjct: 61  KRFRGRTVSYLESLSSLGIALLIALVALAYLRPRDDIVTSFNVLVGIKVGAAFVLIFYSL 120

Query: 121 IAFLERD 127
           IAFLERD
Sbjct: 121 IAFLERD 127


>pir||A71085 hypothetical protein PH0942 - Pyrococcus horikoshii
           >gi|3257356|dbj|BAA30039.1| (AP000004) 127aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 127
           
 Score =  199 bits (502), Expect = 7e-51
 Identities = 101/127 (79%), Positives = 114/127 (89%)

Query: 1   MKMSLIARTTSKIVAPFLVTYAAYLILYGAYSPGGGFQAGVILAVAVILLITSHGYKKVK 60
           MKMSLIARTTSK+VAPFLVTYAAYL+LYGAYSPGGGFQAGVILAVAVILLITSHGY+KV+
Sbjct: 1   MKMSLIARTTSKLVAPFLVTYAAYLMLYGAYSPGGGFQAGVILAVAVILLITSHGYRKVR 60

Query: 61  KRFRGRTVSYLESLSSLGIALLIALVALAYLRPRDDIVTSFNVLVGIKVGAAFVLIFYSL 120
           KRFR + VS LE+ S LGIA L+ L+AL  L P ++++ SFN+L GIKVGAAFVLIFYSL
Sbjct: 61  KRFRKKAVSSLETSSGLGIAFLLLLLALTSLNPNENLIGSFNILAGIKVGAAFVLIFYSL 120

Query: 121 IAFLERD 127
           IAFLERD
Sbjct: 121 IAFLERD 127


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.329    0.144    0.397 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39751624
Number of Sequences: 2977
Number of extensions: 1389385
Number of successful extensions: 5308
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5306
Number of HSP's gapped (non-prelim): 2
length of query: 127
length of database: 189,106,746
effective HSP length: 53
effective length of query: 74
effective length of database: 157,386,935
effective search space: 11646633190
effective search space used: 11646633190
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 160 (66.7 bits)