BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0806 (PAB0806) DE:NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4
related (EC 1.6.5.3)
(479 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75102 NADH dehydrogenase (ubiquinone) chain 4 related PAB0... 929 0.0
pir||H71084 hypothetical protein PH0941 - Pyrococcus horikoshii ... 742 0.0
pir||C72295 hypothetical protein TM1105 - Thermotoga maritima (s... 158 1e-37
pir||G75113 NADH dehydrogenase I chain M PAB0490 - Pyrococcus ab... 152 9e-36
pir||F71019 hypothetical protein PH1451 - Pyrococcus horikoshii ... 151 1e-35
pir||B71017 hypothetical protein PH1431 - Pyrococcus horikoshii ... 150 4e-35
pir||F75059 NADH-dehydrogenase related PAB1402 - Pyrococcus abys... 149 6e-35
gb|AAG19080.1| (AE005007) NADH dehydrogenase/oxidoreductase; Ndh... 144 2e-33
gb|AAF21815.1|AF097740_4 (AF097740) multiple resistance and pH r... 139 5e-32
dbj|BAB05035.1| (AP001511) Na+/H+ antiporter [Bacillus halodurans] 139 6e-32
pir||F75115 co-induced hydrogenase related, chain M PAB1888 - Py... 137 3e-31
pir||S75338 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 130 4e-29
pir||G71019 hypothetical protein PH1452 - Pyrococcus horikoshii ... 129 5e-29
pir||F75113 NADH dehydrogenase I N chain PAB2416 - Pyrococcus ab... 129 9e-29
gi|11467100 nad4 [Marchantia polymorpha] >gi|464242|sp|P26848|NU... 127 2e-28
pir||H82494 probable NADH dehydrogenase VCA0155 [imported] - Vib... 126 6e-28
pir||S74687 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 124 2e-27
gi|11465635 NADH dehydrogenase subunit 4 [Porphyra purpurea] >gi... 124 2e-27
pir||B70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 123 4e-27
gb|AAF03176.1|AF110138_8 (AF110138) NADH dehydrogenase subunit 4... 123 5e-27
gi|8954372 NADH dehydrogenase subunit 4 [Cyanidioschyzon merolae... 123 5e-27
gi|9653250 NADH dehydrogenase subunit 4 [Chondrus crispus] >gi|1... 120 5e-26
gb|AAK41287.1| NADH-Ubiquinone/plastoquinone related [Sulfolobus... 118 1e-25
pir||D64463 conserved hypothetical protein MJ1309 - Methanococcu... 117 2e-25
emb|CAC08260.1| (AL392146) NADH dehydrogenase subunit [Streptomy... 117 3e-25
emb|CAC14150.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 116 4e-25
pir||H82822 NADH-ubiquinone oxidoreductase, NQO14 subunit XF0318... 115 9e-25
pir||B72281 hypothetical protein TM1212 - Thermotoga maritima (s... 115 1e-24
emb|CAB07908.1| (Z93932) unknown [Bacillus subtilis] 115 2e-24
gb|AAF65740.1|AF228525_10 (AF228525) F420H2 dehydrogenase subuni... 115 2e-24
gb|AAG19146.1| (AE005012) F420H2:quinone oxidoreductase chain M;... 114 2e-24
pir||G70008 NADH dehydrogenase (ubiquinone) homolog yufD - Bacil... 114 2e-24
pir||G75060 hydrogenase-4 component B (EC 1.-.-.-) PAB1392 - Pyr... 114 2e-24
gi|11466578 NADH dehydrogenase subunit 4 [Rhodomonas salina] >gi... 114 2e-24
sp|Q9ZCG0|NUOM_RICPR NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 114 3e-24
emb|CAC14149.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 113 3e-24
gi|11466666 NADH dehydrogenase subunit 4 [Malawimonas jakobiform... 113 3e-24
pir||S75961 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 113 5e-24
gi|11466299 NADH dehydrogenase subunit 4 [Cafeteria roenbergensi... 112 8e-24
pir||A48643 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 111 1e-23
pir||T51314 probable CO-induced hydrogenase complex chain CooM [... 111 1e-23
sp|P31978|NUOM_ECOLI NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 111 1e-23
pir||H64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 111 2e-23
gi|11497457 NADH dehydrogenase (ubiquinone), subunit 4 [Protothe... 111 2e-23
pir||S75340 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 111 2e-23
pir||S38322 NADH dehydrogenase I chain nuoM - Escherichia coli (... 110 3e-23
pir||E83514 probable NADH dehydrogenase PA1056 [imported] - Pseu... 110 4e-23
pir||F71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 110 4e-23
gi|11466471 NADH dehydrogenase subunit 4 [Chrysodidymus synuroid... 110 4e-23
pir||S16447 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 109 5e-23
pir||T12297 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 109 9e-23
pir||G71683 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 109 9e-23
gb|AAF65741.1|AF228525_11 (AF228525) F420H2 dehydrogenase subuni... 109 9e-23
gi|11465868 NADH dehydrogenase subunit 4 [Ochromonas danica] >gi... 109 9e-23
dbj|BAA35098.1| (AB015981) MnhD [Staphylococcus aureus] 108 1e-22
sp|Q04050|NU4M_BRACM NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 >gi|... 108 2e-22
emb|CAA69742.3| (Y08501) NADH dehydrogenase subunit 4 [Arabidops... 108 2e-22
gi|11466552 NADH dehydrogenase, subunit 4 [Reclinomonas american... 107 3e-22
pir||E81220 NADH dehydrogenase I, M chain NMB0258 [imported] - N... 106 5e-22
gi|9838467 NADH dehydrogenase subunit 4 [Beta vulgaris] >gi|9087... 106 5e-22
pir||T14236 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 106 5e-22
pir||E83315 NADH dehydrogenase I chain M PA2648 [imported] - Pse... 106 6e-22
pir||H81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain M... 106 6e-22
gi|11465928 NADH dehydrogenase subunit 4 [Pedinomonas minor] >gi... 106 6e-22
gi|7524971 NADH dehydrogenase subunit 4 [Dictyostelium discoideu... 106 8e-22
pir||T12399 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 106 8e-22
sp|P23482|HYFB_ECOLI HYDROGENASE-4 COMPONENT B >gi|7446810|pir||... 105 1e-21
pir||S61395 probable Na+/H+-exchanging protein system component ... 105 1e-21
sp|P57263|NUOM_BUCAI NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 105 1e-21
gi|11467925 NADH dehydrogenase subunit 4 [Scenedesmus obliquus] ... 104 2e-21
sp|P27572|NU4M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 >gi|... 104 3e-21
sp|P50974|NUOM_RHOCA NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 103 4e-21
gi|11466752 ndh4 [Marchantia polymorpha] >gi|128731|sp|P06263|NU... 103 5e-21
sp|O53308|NUON_MYCTU NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO... 103 5e-21
gi|11466428 subunit 4 of NADH-plastoquinoneoxidoreductase [Mesos... 102 7e-21
gb|AAF21812.1|AF097740_1 (AF097740) multiple resistance and pH r... 102 9e-21
emb|CAB89017.1| (AL353870) putative oxidoreductase. [Streptomyce... 102 9e-21
gi|11466208 NADH dehydrogenase subunit 4 [Naegleria gruberi] >gi... 102 9e-21
gb|AAF13041.1|AF157639_1 (AF157639) putative formate hydrogenlya... 102 1e-20
pir||G81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 101 2e-20
gb|AAD52918.1|AF152244_5 (AF152244) NADH dehydrogenase subunit 4... 101 2e-20
pir||S38323 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 101 2e-20
pir||S43882 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 101 2e-20
gi|9695383 NADH dehydrogenase subunit 4 [Phytophthora infestans]... 101 2e-20
pir||S38992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 101 3e-20
emb|CAC12088.1| (AL445066) NADH dehydrogenase, chain N related p... 101 3e-20
pir||S08621 probable hydrogenase 3 protein 3 - Escherichia coli ... 100 3e-20
sp|P32421|NU4C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4 >... 100 3e-20
pir||DENTN4 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 100 3e-20
gi|11467057 NADH dehydrogenase, subunit 4 [Acanthamoeba castella... 100 3e-20
sp|P06262|NU4C_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4, ... 100 3e-20
gi|11466015 NADH dehydrogenase ND4 subunit [Nicotiana tabacum] >... 100 3e-20
pir||F72619 probable NADH dehydrogenase (ubiquinone) chain 13 AP... 100 3e-20
gb|AAK40663.1| NADH dehydrogenase subunit L (NuoL) [Sulfolobus ... 100 4e-20
gi|11467595 NADH dehydrogenase, subunit 4 [Allomyces macrogynus]... 100 4e-20
emb|CAB51628.2| (AJ245399) putative NADH-ubiquinone oxidoreducta... 100 6e-20
sp|P29925|NQOD_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 13 (NA... 99 8e-20
pir||S65076 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 99 8e-20
gb|AAA69233.1| (U29579) formate hydrogenlyase subunit 3 [Escheri... 99 1e-19
gi|7525085 NADH dehydrogenase ND4 [Arabidopsis thaliana] >gi|668... 99 1e-19
emb|CAB64689.1| (AJ235829) NADH dehydrogenase, putative [Anthocl... 99 1e-19
emb|CAB65368.1| (AJ235831) NADH dehydrogenase, putative [Potalia... 99 1e-19
gi|11466847 NADH dehydrogenase ND4 [Oryza sativa] >gi|128732|sp|... 99 1e-19
sp|P16429|HYCC_ECOLI FORMATE HYDROGENLYASE SUBUNIT 3 (FHL SUBUNI... 99 1e-19
sp|P93401|NU2M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2 99 1e-19
sp|O03060|NU4C_HORVU NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4, ... 98 2e-19
sp|Q9ZD13|NUON_RICPR NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO... 98 2e-19
emb|CAA09817.1| (AJ011848) ndhD gene product [Hordeum vulgare] 98 2e-19
gb|AAG23678.1|AF288091_23 (AF288091) NADH dehydrogenase subunit ... 98 2e-19
pir||A70010 NADH dehydrogenase homolog yufT - Bacillus subtilis ... 98 2e-19
gb|AAF03177.1|AF110138_9 (AF110138) NADH dehydrogenase subunit 2... 98 2e-19
emb|CAB65021.1| (AJ235830) NADH dehydrogenase, putative [Fagraea... 98 2e-19
gi|11467101 nad2 [Marchantia polymorpha] >gi|462764|sp|P26846|NU... 98 3e-19
emb|CAB94828.1| (AJ236250) NADH dehydrogenase subunit F [Anthocl... 98 3e-19
sp|P77437|HYFF_ECOLI HYDROGENASE-4 COMPONENT F >gi|7466379|pir||... 97 4e-19
gi|11466676 ndh2 [Marchantia polymorpha] >gi|128656|sp|P06257|NU... 97 5e-19
gb|AAA84290.1| (L36400) NADH dehydrogenase subunit [Gentiana pro... 97 5e-19
sp|P33608|NUON_ECOLI NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO... 97 5e-19
emb|CAB59333.1| (AJ236309) NADH dehydrogenase subunit F [Spermac... 97 5e-19
gb|AAF03771.1| (AF147712) NADH dehydrogenase subunit [Hydrostach... 97 5e-19
pir||A75390 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 97 5e-19
gb|AAF65739.1|AF228525_9 (AF228525) F420H2 dehydrogenase subunit... 97 5e-19
gi|6137793 NADH dehydrogenase subunit 4 [Metridium senile] >gi|3... 96 7e-19
gi|9695386 NADH dehydrogenase subunit 2 [Phytophthora infestans]... 96 7e-19
pir||E81251 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 96 7e-19
pir||F81220 NADH dehydrogenase I, N chain NMB0259 [imported] - N... 96 7e-19
gb|AAF78606.1|AF260826_5 (AF260826) NADH subunit 4 [Cochliomyia ... 96 7e-19
pir||T14239 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 96 7e-19
gb|AAK40664.1| NADH dehydrogenase subunit N (NuoN) [Sulfolobus ... 96 9e-19
gi|11467090 NADH dehydrogenase subunit 4 [Chlamydomonas reinhard... 96 9e-19
pir||T06260 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 96 9e-19
gi|11467867 subunit 4 of NADH-plastoquinoneoxidoreductase [Nephr... 96 9e-19
gi|11466400 subunit 2 of NADH-plastoquinoneoxidoreductase [Mesos... 96 9e-19
gb|AAG19079.1| (AE005006) Vng0562c [Halobacterium sp. NRC-1] 96 9e-19
pir||T13881 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 96 1e-18
gi|11497581 NADH dehydrogenase ND4 subunit [Spinacia oleracea] >... 96 1e-18
pir||G82822 NADH-ubiquinone oxidoreductase, NQO13 subunit XF0317... 96 1e-18
gi|5835927 NADH dehydrogenase subunit 4 [Anopheles quadrimaculat... 95 1e-18
emb|CAA05498.1| (AJ002490) ndhB [Arabidopsis thaliana] 95 1e-18
dbj|BAA35095.1| (AB015981) MnhA [Staphylococcus aureus] 95 1e-18
gi|7525078 NADH dehydrogenase ND2 [Arabidopsis thaliana] >gi|752... 95 1e-18
gb|AAA93548.2| (L04272) NADH dehydrogenase subunit 4 [Anopheles ... 95 1e-18
pir||S77331 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 95 2e-18
pir||F75464 probable NADH-ubiquinone/plastoquinone subunit - Dei... 95 2e-18
pir||G75389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 95 2e-18
emb|CAB67220.1| (AJ271079) NADH-plastoquinone oxidoreductase sub... 95 2e-18
pir||S37071 NADH dehydrogenase I chain nuoN - Escherichia coli >... 94 3e-18
gi|11467244 NADH dehydrogenase ND2 [Zea mays] >gi|11467270|ref|N... 94 3e-18
pir||S51503 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 94 3e-18
gi|11466553 NADH dehydrogenase, subunit 2 [Reclinomonas american... 94 3e-18
gi|11499413 F420H2:quinone oxidoreductase, 53.9 kDa subunit (nuo... 94 3e-18
pir||D70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 94 3e-18
pir||C70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 94 3e-18
pir||T12170 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 94 4e-18
pir||T12171 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 94 4e-18
pir||T12172 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 94 4e-18
pir||T12173 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 94 4e-18
pir||H75389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 93 6e-18
gi|5834920 NADH dehydrogenase subunit 4 [Anopheles gambiae] >gi|... 93 8e-18
pir||T12401 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 93 8e-18
gb|AAD28444.1|AF126026_1 (AF126026) NADH dehydrogenase subunit 2... 93 8e-18
gb|AAG12229.1| (AF163463) NADH dehydrogenase subunit F [Schoenox... 93 8e-18
gi|11467594 NADH dehydrogenase, subunit 2 [Allomyces macrogynus]... 92 1e-17
gb|AAG19078.1| (AE005006) Vng0560c [Halobacterium sp. NRC-1] 92 1e-17
gi|5834838 NADH dehydrogenase subunit 4 [Drosophila yakuba] >gi|... 92 1e-17
sp|Q10880|Y051_MYCTU HYPOTHETICAL 65.6 KD PROTEIN RV0083 >gi|744... 92 1e-17
gi|11466835 NADH dehydrogenase ND2 [Oryza sativa] >gi|11466862|r... 92 2e-17
emb|CAB59307.1| (AJ236287) NADH dehydrogenase subunit F [Carphal... 92 2e-17
emb|CAC12089.1| (AL445066) NADH dehydrogenase, chain M related p... 91 2e-17
sp|Q55429|NU5C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >... 91 3e-17
pir||S65075 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 91 3e-17
gi|9653248 NADH dehydrogenase subunit 2 [Chondrus crispus] >gi|1... 91 3e-17
sp|P72714|NU2C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 2 >... 91 3e-17
pir||A39366 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 90 4e-17
pir||T34612 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 90 4e-17
emb|CAB89015.1| (AL353870) probable NADH dehydrogenase I complex... 90 4e-17
emb|CAC12090.1| (AL445066) NADH dehydrogenase, chain L related p... 90 4e-17
gi|5835047 NADH dehydrogenase subunit 4 [Didelphis virginiana] >... 90 5e-17
emb|CAA63737.1| (X93358) phaD [Sinorhizobium meliloti] 90 5e-17
emb|CAB59310.1| (AJ236293) NADH dehydrogenase subunit F [Danais ... 90 5e-17
gb|AAF27244.1|AF111766_1 (AF111766) NADH dehydrogenase [Sparrman... 90 5e-17
gi|11466469 NADH dehydrogenase subunit 5 [Chrysodidymus synuroid... 90 5e-17
gb|AAF82680.1| (AF188856) NADH dehydrogenase subunit B [Nymphaea... 90 5e-17
pir||F83315 NADH dehydrogenase I chain N PA2649 [imported] - Pse... 90 5e-17
gb|AAG12221.1| (AF163455) NADH dehydrogenase subunit F [Carex de... 90 5e-17
pir||S47879 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 90 5e-17
gb|AAG12227.1| (AF163461) NADH dehydrogenase subunit F [Kobresia... 90 5e-17
gb|AAG26093.1| (AF123771) NADH dehydrogenase subunit B [Acorus c... 90 5e-17
gb|AAG26132.1| (AF123784) NADH dehydrogenase subunit B [Trochode... 90 5e-17
emb|CAB65486.1| (AJ235842) NADH dehydrogenase, putative [Usteria... 90 7e-17
gb|AAF27247.1|AF111769_1 (AF111769) NADH dehydrogenase [Grewia b... 90 7e-17
gb|AAG26111.1| (AF123777) NADH dehydrogenase subunit B [Dioscore... 90 7e-17
pir||C70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 89 9e-17
gb|AAF03715.1| (AF182322) NADH dehydrogenase subunit 4 [Drosophi... 89 9e-17
emb|CAB67207.1| (AJ271079) NADH-plastoquinone oxidoreductase sub... 89 9e-17
sp|P56911|NUN2_RHIME NADH DEHYDROGENASE I CHAIN N 2 (NADH-UBIQUI... 89 9e-17
gb|AAF73308.1| (AF188850) NADH dehydrogenase subunit B [Zamia fu... 89 9e-17
gb|AAF77285.1| (AF200832) NADH dehydrogenase subunit 4 [Drosophi... 89 9e-17
gi|11466667 NADH dehydrogenase subunit 2 [Malawimonas jakobiform... 89 9e-17
gb|AAG26099.1| (AF123773) NADH dehydrogenase subunit B [Cabomba ... 89 9e-17
gb|AAD52735.1|AF123677_1 (AF123677) NADH dehydrogenase [Bacopa c... 89 1e-16
emb|CAB59327.1| (AJ236304) NADH dehydrogenase subunit F [Pentas ... 89 1e-16
gb|AAF03711.1| (AF182320) NADH dehydrogenase subunit 4 [Drosophi... 89 1e-16
gb|AAG26108.1| (AF123776) NADH dehydrogenase subunit B [Cercidip... 89 1e-16
gb|AAG26117.1| (AF123779) NADH dehydrogenase subunit B [Ginkgo b... 89 1e-16
gb|AAG26123.1| (AF123781) NADH dehydrogenase subunit B [Lactoris... 89 1e-16
sp|P31971|NU5C_SYNP2 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >... 89 1e-16
pir||T12400 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 89 1e-16
pir||T13665 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 88 2e-16
gb|AAF03741.1| (AF182335) NADH dehydrogenase subunit 4 [Drosophi... 88 2e-16
gb|AAF03747.1| (AF182338) NADH dehydrogenase subunit 4 [Drosophi... 88 2e-16
gb|AAF77299.1| (AF200833) NADH dehydrogenase subunit 4 [Drosophi... 88 2e-16
gb|AAG26096.1| (AF123772) NADH dehydrogenase subunit B [Asarum c... 88 2e-16
gb|AAA84181.1| (L36397) NADH dehydrogenase subunit [Catalpa sp. ... 88 3e-16
gb|AAF03729.1| (AF182329) NADH dehydrogenase subunit 4 [Drosophi... 88 3e-16
gb|AAF03737.1| (AF182333) NADH dehydrogenase subunit 4 [Drosophi... 88 3e-16
pir||B82495 probable NADH dehydrogenase VCA0157 [imported] - Vib... 88 3e-16
gb|AAG26129.1| (AF123783) NADH dehydrogenase subunit B [Saururus... 88 3e-16
pir||S26025 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 87 3e-16
gi|5834883 NADH dehydrogenase subunit 5 [Ascaris suum] >gi|11718... 87 3e-16
gb|AAA64192.1| (U21988) NADH dehydrogenase F [Danthoniopsis peti... 87 3e-16
gi|11466005 NADH dehydrogenase ND2 subunit [Nicotiana tabacum] >... 87 3e-16
pir||T14229 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 87 3e-16
gb|AAF03713.1| (AF182321) NADH dehydrogenase subunit 4 [Drosophi... 87 3e-16
gb|AAF03721.1| (AF182325) NADH dehydrogenase subunit 4 [Drosophi... 87 3e-16
pir||S01187 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 87 4e-16
gi|11497569 NADH dehydrogenase ND2 subunit [Spinacia oleracea] >... 87 4e-16
gi|11465866 NADH dehydrogenase subunit 5 [Ochromonas danica] >gi... 87 4e-16
pir||T13409 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 87 6e-16
gb|AAF03723.1| (AF182326) NADH dehydrogenase subunit 4 [Drosophi... 87 6e-16
gb|AAF77272.1| (AF200831) NADH dehydrogenase subunit 4 [Drosophi... 87 6e-16
emb|CAC14148.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 87 6e-16
sp|Q56229|NQOE_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 14 (NA... 86 7e-16
gi|11465633 NADH dehydrogenase subunit 2 [Porphyra purpurea] >gi... 86 7e-16
gb|AAF03717.1| (AF182323) NADH dehydrogenase subunit 4 [Drosophi... 86 7e-16
gb|AAF03725.1| (AF182327) NADH dehydrogenase subunit 4 [Drosophi... 86 7e-16
gb|AAF77378.1| (AF200839) NADH dehydrogenase subunit 4 [Drosophi... 86 7e-16
gi|11465911 NADH dehydrogenase subunit 4 [Chlamydomonas eugameto... 86 1e-15
gb|AAF77260.1| (AF200830) NADH dehydrogenase subunit 4 [Drosophi... 86 1e-15
emb|CAB59322.1| (AJ236300) NADH dehydrogenase subunit F [Morinda... 85 1e-15
gb|AAF03739.1| (AF182334) NADH dehydrogenase subunit 4 [Drosophi... 85 1e-15
gb|AAF25173.1|AF182345_1 (AF182345) NADH dehydrogenase [Puelia o... 85 1e-15
pir||C83514 probable NADH dehydrogenase PA1054 [imported] - Pseu... 85 1e-15
gb|AAG19147.1| (AE005012) NADH dehydrogenase/oxidoreductase; Ndh... 85 1e-15
pir||T14242 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 85 2e-15
gb|AAF03731.1| (AF182330) NADH dehydrogenase subunit 4 [Drosophi... 85 2e-15
gb|AAF90048.1| (AF238062) NADH dehydrogenase subunit F [Schisand... 85 2e-15
gi|5835242 NADH dehydrogenase subunit 4 [Drosophila melanogaster... 85 2e-15
pir||T12677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 84 3e-15
sp|O53307|NUOM_MYCTU NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 84 3e-15
gb|AAA69711.1| (M37275) NADH dehydrogenase 4 [Drosophila melanog... 84 4e-15
pir||G64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 83 5e-15
gi|11466061 NADH dehydrogenase subunit 4 [Pichia canadensis] >gi... 83 5e-15
gi|5835255 NADH dehydrogenase subunit 4 [Locusta migratoria] >gi... 83 6e-15
pir||T03467 NADH dehydrogenase (ubiquinone) chain 5 homolog - Rh... 83 8e-15
gi|5834894 NADH dehydrogenase subunit 5 [Caenorhabditis elegans]... 83 8e-15
emb|CAA23995.1| (V00650) URF 4 [Emericella nidulans] 83 8e-15
sp|P03913|NU4M_ASPAM NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 >gi|... 83 8e-15
sp|P18931|NU4M_DROME NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 83 8e-15
pir||T12625 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 82 1e-14
gi|5835688 NADH dehydrogenase subunit 5 [Ixodes hexagonus] >gi|7... 82 1e-14
gb|AAF63428.1|AF150756_10 (AF150756) NADH dehydrogenase subunit ... 82 1e-14
gi|9653251 NADH dehydrogenase subunit 5 [Chondrus crispus] >gi|1... 82 1e-14
sp|P50973|NUON_RHOCA NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO... 82 1e-14
pir||E71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 82 1e-14
sp|P29926|NQOE_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 14 (NA... 81 3e-14
gb|AAF02924.1|AF092363_1 (AF092363) NADH dehydrogenase subunit I... 81 3e-14
emb|CAC07176.1| (AJ249405) NADH dehydrogenase [Aphelandra squarr... 81 3e-14
sp|O86350|NUOL_MYCTU NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 80 4e-14
pir||A72281 hypothetical protein TM1211 - Thermotoga maritima (s... 80 4e-14
sp|P50367|NU5M_RHIST NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 80 6e-14
prf||2204231G NADH ubiquinone oxidoreductase [Rhodobacter capsul... 80 6e-14
sp|P50939|NUOL_RHOCA NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 80 6e-14
sp|P29924|NQOC_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 12 (NA... 78 2e-13
pir||B70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 78 2e-13
gi|5835550 NADH dehydrogenase subunit 4 [Alligator mississippien... 78 2e-13
pir||JQ1447 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 78 2e-13
sp|Q37680|NU5M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 78 2e-13
sp|P48917|NU4M_HANWI NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 78 2e-13
sp|Q56228|NQOD_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 13 (NA... 77 4e-13
pir||A70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 77 4e-13
gi|7374125 NADH dehydrogenase subunit 5 [Penaeus monodon] >gi|72... 77 4e-13
gb|AAC99598.1| (AF028682) NADH dehydrogenase subunit 2 [Laudakia... 77 5e-13
gb|AAC99601.1| (AF028683) NADH dehydrogenase subunit 2 [Laudakia... 77 5e-13
sp|P10330|NU5M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 76 8e-13
gi|8928592 NADH dehydrogenase subunit 5 [Paramecium aurelia] >gi... 76 8e-13
gi|5835215 NADH dehydrogenase subunit 4 [Felis catus] >gi|135256... 76 8e-13
pir||F71683 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 76 1e-12
gi|7525007 NADH dehydrogenase subunit 5 [Dictyostelium discoideu... 76 1e-12
gi|5834890 NADH dehydrogenase subunit 4 [Caenorhabditis elegans]... 75 1e-12
gi|5835290 NADH dehydrogenase subunit 5 [Albinaria caerulea] >gi... 75 1e-12
pir||T14241 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 75 1e-12
gi|7549735 NADH dehydrogenase subunit 5 [Ciconia ciconia] >gi|74... 75 1e-12
gb|AAF63427.1|AF150756_9 (AF150756) NADH dehydrogenase subunit 5... 75 1e-12
sp|P50368|NU5M_SCHCO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 75 2e-12
sp|P05510|NU5M_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 75 2e-12
gi|5835884 NADH dehydrogenase subunit 5 [Ceratitis capitata] >gi... 75 2e-12
gi|5834854 NADH dehydrogenase subunit 5 [Gallus gallus] >gi|1287... 74 3e-12
gi|5835230 NADH dehydrogenase subunit 5 [Protopterus dolloi] >gi... 74 3e-12
gi|5835745 NADH dehydrogenase subunit 4 [Chrysemys picta] >gi|75... 74 4e-12
gi|5836026 NADH dehydrogenase subunit 4 [Eumeces egregius] >gi|5... 74 4e-12
gb|AAF77284.1| (AF200832) NADH dehydrogenase subunit 5 [Drosophi... 73 5e-12
gb|AAF78607.1|AF260826_6 (AF260826) NADH subunit 5 [Cochliomyia ... 73 5e-12
pir||T13795 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 73 7e-12
gb|AAF65709.1|AF222547_1 (AF222547) NADH dehydrogenase subunit 2... 73 7e-12
gb|AAF77298.1| (AF200833) NADH dehydrogenase subunit 5 [Drosophi... 73 7e-12
gb|AAB33356.1| (S76764) NADH dehydrogenase subunit 5, ND5 [Droso... 73 9e-12
pir||S50343 ND5 protein - fruit fly (Drosophila simulans) mitoch... 73 9e-12
gb|AAF66609.1| (AF142407) NADH dehydrogenase subunit V [Gallus g... 73 9e-12
emb|CAB91058.1| (AJ400907) NADH dehydrogenase subunit 5 [Drosoph... 73 9e-12
gb|AAF77233.1| (AF200828) NADH dehydrogenase subunit 5 [Drosophi... 73 9e-12
gb|AAF77251.1| (AF200829) NADH dehydrogenase subunit 5 [Drosophi... 73 9e-12
gi|5835621 NADH dehydrogenase subunit 5 [Struthio camelus] >gi|6... 72 1e-11
gi|5835118 NADH dehydrogenase subunit 5 [Equus caballus] >gi|135... 72 1e-11
emb|CAB11636.1| (Z98972) Nad5 protein [Diphyscium sessile] 72 1e-11
gi|5834837 NADH dehydrogenase subunit 5 [Drosophila yakuba] >gi|... 71 2e-11
gi|5835153 NADH dehydrogenase subunit 5 [Gorilla gorilla] >gi|25... 71 2e-11
pir||B59154 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 71 2e-11
gb|AAF77271.1| (AF200831) NADH dehydrogenase subunit 5 [Drosophi... 71 2e-11
gb|AAF77377.1| (AF200839) NADH dehydrogenase subunit 5 [Drosophi... 71 2e-11
gb|AAF77415.1| (AF200842) NADH dehydrogenase subunit 5 [Drosophi... 71 2e-11
gb|AAF77441.1| (AF200844) NADH dehydrogenase subunit 5 [Drosophi... 71 2e-11
gi|9838484 NADH dehydrogenase subunit 5 [Beta vulgaris] >gi|9087... 71 2e-11
gb|AAG00754.1|AF128506_2 (AF128506) NADH dehydrogenase subunit 2... 71 2e-11
gi|5835241 NADH dehydrogenase subunit 5 [Drosophila melanogaster... 71 3e-11
gb|AAA69710.1| (M37275) NADH dehydrogenase 5 [Drosophila melanog... 71 3e-11
gi|5835259 NADH dehydrogenase subunit 5 [Locusta migratoria] >gi... 71 3e-11
gi|11465636 NADH dehydrogenase subunit 5 [Porphyra purpurea] >gi... 71 3e-11
gi|5835689 NADH dehydrogenase subunit 4 [Ixodes hexagonus] >gi|7... 71 3e-11
gi|5835901 NADH dehydrogenase subunit 5 [Salvelinus fontinalis] ... 71 3e-11
sp|Q36428|NU5M_LOCMI NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 71 3e-11
gb|AAF77259.1| (AF200830) NADH dehydrogenase subunit 5 [Drosophi... 71 3e-11
gi|11182470 NADH dehydrogenase subunit 4 [Triatoma dimidiata] >g... 71 3e-11
gi|11466906 NADH-ubiquinone oxidoreductase subunit 5 [Podospora ... 70 5e-11
gi|6137777 NADH dehydrogenase subunit 4 [Platynereis dumerilii] ... 70 5e-11
gi|7555772 NADH dehydrogenase subunit 5 [Ciconia boyciana] >gi|7... 70 5e-11
gi|11466579 NADH dehydrogenase subunit 5 [Rhodomonas salina] >gi... 70 5e-11
emb|CAA39308.1| (X55786) ORF1269 [Beta vulgaris] 70 6e-11
gi|5835957 NADH dehydrogenase subunit 5 [Falco peregrinus] >gi|7... 70 6e-11
pir||S14115 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 70 6e-11
gi|9838426 orf399 [Beta vulgaris] 70 6e-11
gi|5835139 NADH dehydrogenase subunit 5 [Pan paniscus] >gi|25069... 69 8e-11
gb|AAC99610.1| (AF028686) NADH dehydrogenase subunit 2 [Laudakia... 69 8e-11
gi|5835775 NADH dehydrogenase subunit 5 [Orycteropus afer] >gi|7... 69 8e-11
gb|AAG00709.1|AF128491_2 (AF128491) NADH dehydrogenase subunit 2... 69 8e-11
gb|AAG23669.1|AF288091_14 (AF288091) NADH dehydrogenase subunit ... 69 8e-11
>pir||B75102 NADH dehydrogenase (ubiquinone) chain 4 related PAB0806 -
Pyrococcus abyssi (strain Orsay)
>gi|5458631|emb|CAB50119.1| (AJ248286) NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4 related (EC 1.6.5.3) [Pyrococcus
abyssi]
Length = 479
Score = 929 bits (2375), Expect = 0.0
Identities = 479/479 (100%), Positives = 479/479 (100%)
Query: 1 MNAVIMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSR 60
MNAVIMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSR
Sbjct: 1 MNAVIMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSR 60
Query: 61 GGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLI 120
GGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLI
Sbjct: 61 GGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLI 120
Query: 121 GAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIYFQTG 180
GAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIYFQTG
Sbjct: 121 GAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIYFQTG 180
Query: 181 YLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
YLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA
Sbjct: 181 YLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
Query: 241 PIYGLILLSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG 300
PIYGLILLSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG
Sbjct: 241 PIYGLILLSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG 300
Query: 301 NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLG 360
NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLG
Sbjct: 301 NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLG 360
Query: 361 ITIGGVAKSYLATTEKAIIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGVLT 420
ITIGGVAKSYLATTEKAIIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGVLT
Sbjct: 361 ITIGGVAKSYLATTEKAIIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGVLT 420
Query: 421 VLVGIELGGKLSKYDLLIPLAFLTFYALRGYLTRRDYVIRLEANHGVALFALILGLFSI 479
VLVGIELGGKLSKYDLLIPLAFLTFYALRGYLTRRDYVIRLEANHGVALFALILGLFSI
Sbjct: 421 VLVGIELGGKLSKYDLLIPLAFLTFYALRGYLTRRDYVIRLEANHGVALFALILGLFSI 479
>pir||H71084 hypothetical protein PH0941 - Pyrococcus horikoshii
>gi|3257355|dbj|BAA30038.1| (AP000004) 481aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 481
Score = 742 bits (1895), Expect = 0.0
Identities = 365/481 (75%), Positives = 423/481 (87%), Gaps = 2/481 (0%)
Query: 1 MNAVIMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSR 60
MNA++MV+ PVIFS+L+YIFGTFRIEGTFRA+FRLPL EVK LY +G+FLPMLL P +
Sbjct: 1 MNAIVMVLGPVIFSILVYIFGTFRIEGTFRAKFRLPLAQEVKILYFIGIFLPMLLLPFVQ 60
Query: 61 GGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLI 120
GGVVG YPRE+GIEV LD++S TF++AEF+VFG SSLYL+ R TNWKELSLLLLMH+GLI
Sbjct: 61 GGVVGNYPRELGIEVNLDFISMTFILAEFIVFGTSSLYLLPRATNWKELSLLLLMHAGLI 120
Query: 121 GAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIYFQTG 180
GAFISKDYFNFY+FMELS+VSSYALIAS+D++AAF YL+LSMTASY+ ILALGMIYFQTG
Sbjct: 121 GAFISKDYFNFYIFMELSSVSSYALIASKDKKAAFNYLILSMTASYIFILALGMIYFQTG 180
Query: 181 YLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
YLNVELAS VGLRDDTPLRLAA++L+LKAGIFPLH+WLPDAHSNAKTYVSSILSGI VKA
Sbjct: 181 YLNVELASRVGLRDDTPLRLAAVALMLKAGIFPLHMWLPDAHSNAKTYVSSILSGIVVKA 240
Query: 241 PIYGLILLSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG 300
PIYGLILLS LG+ FLKPFA LSM FGV+MAILQFNAKRLLAYHTVSQMGYILLG+ST
Sbjct: 241 PIYGLILLSRLGNFEFLKPFAYLSMIFGVLMAILQFNAKRLLAYHTVSQMGYILLGVSTS 300
Query: 301 NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLG 360
N+ GATLYSLAHA+FK GLFLGVG I+D R+R +L LGS+N LL++SI +LSLAISGLG
Sbjct: 301 NITGATLYSLAHAIFKSGLFLGVGGIVDTRRRMELNKLGSKNSLLLISILMLSLAISGLG 360
Query: 361 ITIGGVAKSYLATT--EKAIIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGV 418
+TIGGV K+ L T+ +K IIYAVSFGTAFSFSKLNYYLWKG+GNEP+N+S+LPSL G
Sbjct: 361 VTIGGVGKAQLVTSKLDKIIIYAVSFGTAFSFSKLNYYLWKGHGNEPSNYSVLPSLISGT 420
Query: 419 LTVLVGIELGGKLSKYDLLIPLAFLTFYALRGYLTRRDYVIRLEANHGVALFALILGLFS 478
L ++G LGGKLS YD LI LA L+FYA+R +L +RDY+I++ N ALFALILG+ S
Sbjct: 421 LAFILGFMLGGKLSTYDSLILLAALSFYAVRNHLVKRDYLIKVNLNESAALFALILGVVS 480
Query: 479 I 479
I
Sbjct: 481 I 481
>pir||C72295 hypothetical protein TM1105 - Thermotoga maritima (strain MSB8)
>gi|4981650|gb|AAD36181.1|AE001769_11 (AE001769) NADH
dehydrogenase, putative [Thermotoga maritima]
Length = 452
Score = 158 bits (396), Expect = 1e-37
Identities = 123/413 (29%), Positives = 208/413 (49%), Gaps = 25/413 (6%)
Query: 72 GIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNF 131
G+ + LD S FLI +V L + + N +LLL++ L AF+S D FN
Sbjct: 55 GVHLLLDQTSYFFLILTAVVL----LAVFTKGLNVSLSNLLLILLGALNLAFVSYDLFNI 110
Query: 132 YVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILALGMIYFQTGYLNVELA 187
YV +E+ ++ ++ L+ ++ +AFKYL+L + ++ +G++Y G L++
Sbjct: 111 YVTVEVVSLITFLLVVEGRKKIQYWSAFKYLILGTVGMNLYLIGIGVLYAGNGTLSISDI 170
Query: 188 SEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLIL 247
S+V D L A+ L+L+AG+F +WLP HS A+T +S++LSG+ VK+ +Y L+
Sbjct: 171 SKV---DSFASVLVAVGLLLRAGVFLFSMWLPQVHSEAETPISAVLSGVVVKSAVYALVR 227
Query: 248 LSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATL 307
L ++ + +K FAI S GV+ A L + KR+LAY T+SQ+G +L T A +
Sbjct: 228 LEHVVNWDVVKIFAIFSALSGVLFAFLSKDYKRILAYSTLSQIGIVLASPVT-----APV 282
Query: 308 YSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIG--- 364
Y+LAH +FK LFL + D +D+ + +S+++ SL+I GL G
Sbjct: 283 YALAHGVFKSWLFL----LKDELPERDVTKWKRLDFWTWLSLSLASLSIMGLPGLAGFSK 338
Query: 365 GVAKSYLATTEKAIIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGVLTVLVG 424
+ L EK + V GTA SF K ++ P ++ P L + LT+ +
Sbjct: 339 NLVLEQLHGWEKIFMEVVFVGTAASFWKFLLKPFEFKKKLPGMYN--PVLLIASLTIGLY 396
Query: 425 IELGGKLSKYDLLIPLAFLTFYALRGYLTRRDYVIRLEANHGVALFALILGLF 477
++ + LL+ L + + + + E+ GV L +++ LF
Sbjct: 397 FASWERVLESFLLMGAGLLVHFLFKNLKIEKYPLEDFESMLGVYLLGVVVCLF 449
>pir||G75113 NADH dehydrogenase I chain M PAB0490 - Pyrococcus abyssi (strain
Orsay) >gi|5458135|emb|CAB49624.1| (AJ248285) NADH
DEHYDROGENASE I SUBUNIT M [Pyrococcus abyssi]
Length = 618
Score = 152 bits (380), Expect = 9e-36
Identities = 140/499 (28%), Positives = 237/499 (47%), Gaps = 96/499 (19%)
Query: 1 MNAVIMVI--SPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPML---- 54
MN +++ + SP++ L ++F I + + ++G +P++
Sbjct: 1 MNELLLAVIFSPLVAGFLAWLFNVKGIR---------------EGIGVIGALIPLIGLIK 45
Query: 55 LFPLSRGGV-----VGGYPREIGIEVG-LDWVSSTFLIAEFLVFGASSLY-LVKRVTNWK 107
L+P GV VGG+ ++G + L+W+ S +IA V G S++ +V +
Sbjct: 46 LYPSLGQGVSYTITVGGF--KLGFMMSHLNWIFS--MIAA--VVGVSAILGMVSTAKDGY 99
Query: 108 ELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYV 167
E L+ +G +G F ++D F++F E+ +S+ ++ +R A+ KY LLS+ +Y
Sbjct: 100 EWLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRAASLKYFLLSIMGAYA 159
Query: 168 LILALGMIYFQTG---------YLNVELASEV--GLRDDTPLRLAAISLI------LKAG 210
+++A+G+IY +TG + E S + G + L +A I L+ +KAG
Sbjct: 160 MLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAG 219
Query: 211 IFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI---------LLSNLGDLSFLKPFA 261
+FPLHVW PDA+S ++I SG+ KA +YG I LL +LG + F
Sbjct: 220 MFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFG 279
Query: 262 I-------LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLA 311
L++ G I+A LQ + +RL AY ++SQ+GYIL+GL G G A ++++
Sbjct: 280 YVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAIS 339
Query: 312 HAMFKGGLFLGVGAIIDARKRKDLKYLGSRN-----ILLIVSIAILSLAISGLGITIGGV 366
HA+FKG FL V +I + + K G + IAILSLA G+ +G
Sbjct: 340 HALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLA--GIPPLVGFA 397
Query: 367 AK-----SYLATTEKAIIYAVSFGTAFSF---SKLNYYLWKGYGNEPTNFS--------- 409
+K + ++ + V FG+A F + Y +W +G P++
Sbjct: 398 SKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVW--FGQRPSDIEDTKDAPLPL 455
Query: 410 ILPSLTLGVLTVLVGIELG 428
+ LG L V+ G+ G
Sbjct: 456 AIGMAILGTLNVVFGVAPG 474
>pir||F71019 hypothetical protein PH1451 - Pyrococcus horikoshii
>gi|3257875|dbj|BAA30558.1| (AP000006) 617aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 617
Score = 151 bits (378), Expect = 1e-35
Identities = 147/488 (30%), Positives = 233/488 (47%), Gaps = 75/488 (15%)
Query: 1 MNAVIMV-ISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLS 59
MN ++++ SP++ +L ++ RI G R L + + L L P L P+
Sbjct: 1 MNELLLITFSPLVAGVLAWLV---RIRGV---RESLGILGAIVPLAFLIKLYPSLDHPIR 54
Query: 60 RGGVVGGYPREIGIEVG-LDWVSSTF--LIAEFLVFGASSLYLVKRVTNWKELSLLLLMH 116
+GG+ E+G + L+WV S ++ VFG +S K W SL+ L
Sbjct: 55 ATISLGGF--ELGFSMSHLNWVFSMIAAVVGLSAVFGMAST--AKDSYEWL-FSLMSL-- 107
Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIY 176
+G +G F+++D F++F E+ SS+ ++ +R A+ KYL+LS+ +Y +++A+G+IY
Sbjct: 108 TGALGIFMAQDLVTFFIFWEVMTFSSFMMVLKFNRAASLKYLILSIIGAYSMLVAIGIIY 167
Query: 177 FQTGYL-----------NVELASEVGLRDDTPLRLAAISLI------LKAGIFPLHVWLP 219
+TG LA G + +A I L+ +KAG+FPLHVW P
Sbjct: 168 AKTGTFTFADISAFFRKEAMLAMLGGKSTFSRFDMALIYLLFLMAFGVKAGMFPLHVWAP 227
Query: 220 DAHSNAKTYVSSILSGIAVKAPIYGLILL------SNLGDLSFLKPFAI----------L 263
DA+S ++I SG+ K +YG ILL L DL K + L
Sbjct: 228 DAYSETDQSYTAIFSGVLSKTGVYGFILLYVLMYGKLLIDLGQFKGTPLFGYIIAFLGGL 287
Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLF 320
++ G ++A LQ + ++L AY ++SQ+GYIL+GL G G A ++++HA+FKG F
Sbjct: 288 TIIIGGVLAALQEDIRKLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFF 347
Query: 321 LGVGAIIDARKRKDLKYLGSRN-----ILLIVSIAILSLAISGLGITIGGVAKSYL---A 372
L V II + + K G + IAILSLA G+ +G +K +
Sbjct: 348 LVVATIIYRTGKTEFKDFGGLAEKMPFTFAMAFIAILSLA--GIPPLVGFASKWLIFEAV 405
Query: 373 TTEKAIIYA--VSFGTAFSF---SKLNYYLWKGY---GNEPTNFSILPSL----TLGVLT 420
++K I + FG+A F + Y +W G E T + LP LG L
Sbjct: 406 ISQKLPILGGMLFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMGILGTLN 465
Query: 421 VLVGIELG 428
V+ G+ G
Sbjct: 466 VVFGVAPG 473
>pir||B71017 hypothetical protein PH1431 - Pyrococcus horikoshii
>gi|3257855|dbj|BAA30538.1| (AP000006) 510aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 510
Score = 150 bits (374), Expect = 4e-35
Identities = 115/368 (31%), Positives = 188/368 (50%), Gaps = 51/368 (13%)
Query: 107 KELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLS 161
K +L+L++ G++G I+ D FNFYVF+E+ +++SYAL+A ++ EA KY+ +
Sbjct: 114 KYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVG 173
Query: 162 MTASYVLILALGMIYFQ-----TGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHV 216
AS +++L + ++Y Q GYL V+++ + L L L+ K+G P+H+
Sbjct: 174 SLASSLVLLGIALLYGQYGTLTMGYLAVKMSENPTIVAKIALSLFLGGLLFKSGASPVHM 233
Query: 217 WLPDAHSNAKTYVSSILSGIAVKAP-IYGL-----------ILLSNLGDLSFLKPFAILS 264
WL DAH A + +S++LSG+ +K IY + I L+ +G L + FA ++
Sbjct: 234 WLADAHPAAPSSISAMLSGLVIKVGGIYAIARVVFSIFLPAINLATVGWLVII--FACIT 291
Query: 265 MAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNV-YGATLYSLA----------HA 313
+ G MA++Q + KRLLAY +V Q+GYILLGL G V YG+ + LA HA
Sbjct: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGMVAYGSKIGELALAGAIYHIVNHA 351
Query: 314 MFKGGLFLGVGAIIDARKRKDLKYL-GSRNILLIVSIAILSLAISGLGI-TIGGVAKSYL 371
M K LFL GA++ ++L L G + + A L A + +G+ + G A +L
Sbjct: 352 MMKALLFLVAGAVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWL 411
Query: 372 ATTEKAIIYAV-----SFGTAFSFSKLNYYLWKGYG---------NEPTNFSILPSLTLG 417
A+ + GTAF + L+ +G +P ++P L
Sbjct: 412 IYESSALFNPIIGSIAIIGTAFCTAAYVRVLFTFFGRPNEKVMRAKDPGALMLIPMFILV 471
Query: 418 VLTVLVGI 425
+ +L+GI
Sbjct: 472 IAIILMGI 479
>pir||F75059 NADH-dehydrogenase related PAB1402 - Pyrococcus abyssi (strain
Orsay) >gi|5458884|emb|CAB50371.1| (AJ248287)
NADH-dehydrogenase related [Pyrococcus abyssi]
Length = 499
Score = 149 bits (373), Expect = 6e-35
Identities = 130/434 (29%), Positives = 216/434 (48%), Gaps = 51/434 (11%)
Query: 41 VKALYLLGVFLPML----LFPLSRGGVV------GGYPREIGIEVGLDWVSSTFLIAEFL 90
++A LLG L ++ LF L+ + G + IGI +D +SS + +
Sbjct: 32 IQAYALLGTGLTLISTFKLFQLTYSSSLPIVYTFGKWRAPIGIVYEVDRLSSLIALVTAV 91
Query: 91 VFGASSLYLVKRVTNWKEL----SLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALI 146
+ ++Y + + K L +L L + SGL+G ++ D FN +V +E++++++YAL+
Sbjct: 92 LMFLIAIYSYRYLEREKGLEWYYTLYLGLESGLLGVLLTGDAFNLFVMIEVTSIAAYALV 151
Query: 147 AS-QDRE----AAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASE-------VGLRD 194
+DR+ A KY L+ + + LALG+ Y G +N SE V L
Sbjct: 152 MFYRDRKDSVLAGLKYALIGAVGTTMYFLALGVFYGTFGTVNFADLSEKLHSSGNVVLAS 211
Query: 195 DTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI-----LLS 249
L LA + ++KA IFP H WLP+AH A + +S+ILSG+ V +Y +I L S
Sbjct: 212 SVALVLATWAFLIKATIFPNHFWLPEAHPAAPSPISAILSGLVVNVGVYAMIRFLYTLYS 271
Query: 250 NLGDLSFLKPFAI-----LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG 304
L + FAI +S FG +M Q + KRL+AY T+ MGY+L+ + G G
Sbjct: 272 GLSWIIGWLSFAIIILGAISSIFGALMMNTQRDVKRLVAYSTIMHMGYLLMAVGVGTQLG 331
Query: 305 ---ATLYSLAHAMFKGGLFLGVGAII---DARKRKDLKYLGSRNILLIVSIAILSLAISG 358
A + + HA+ K LFL VG I +R DL LG + + S+AI +L++ G
Sbjct: 332 LQAALFHLINHAIAKALLFLAVGVFIHVAGSRNIDDLAGLGRKMPITTFSLAIATLSLVG 391
Query: 359 LGITIGGVAKSYL--ATTEK----AIIYAVSFGTAF-SFSKLNYYLWKGYGNEPTNFSIL 411
+ +K L A EK A++ AV+ A ++ ++ Y LW G E + +
Sbjct: 392 IPPLNVFFSKLLLFNALLEKSFFLALVIAVTSVIALVAYMRVLYTLWLGKPRE--DLDVK 449
Query: 412 PSLTLGVLTVLVGI 425
S+++ ++ +++ +
Sbjct: 450 ESISMSMICLILAL 463
>gb|AAG19080.1| (AE005007) NADH dehydrogenase/oxidoreductase; NdhG2 [Halobacterium
sp. NRC-1]
Length = 380
Score = 144 bits (360), Expect = 2e-33
Identities = 92/286 (32%), Positives = 154/286 (53%), Gaps = 26/286 (9%)
Query: 113 LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVL 168
+L+ +GL G ++ D FN YVF+E++ +++YAL+A S+ AA KYLL+ + +
Sbjct: 1 MLLVAGLSGMTVTADLFNMYVFLEITGLTAYALVAAGEDSRSTVAALKYLLVGTFGASLF 60
Query: 169 ILALGMIYFQTGYLNV-ELASEVGLRD----DTPLRLAAISLILKAGIFPLHVWLPDAHS 223
+L +G Y TG LN+ +LA+++ D L + L +K +FPLH W PDA++
Sbjct: 61 LLGIGYAYVGTGTLNMADLAAKLADADPVLAQAAFALIVVGLFIKVAVFPLHTWQPDAYA 120
Query: 224 NAKTYVSSILSGIAVKAPIYGLI-----------LLSNLGDLSFLKPFAILSMAFGVIMA 272
A VS+++S + Y L+ L S + L A++S+ G ++A
Sbjct: 121 GAPDTVSALISALVSTVAAYALLRVVYTVFGAGFLDSTPVARAILIGGAVVSIVAGSLLA 180
Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAI--- 326
+ Q KR+LAY +VSQ G IL ++ GN + GA ++ + HA+ KGGLFL G +
Sbjct: 181 VSQSEIKRVLAYSSVSQFGLILAAIAIGNDTALTGAAIHLVGHAVMKGGLFLTAGVVATE 240
Query: 327 IDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYLA 372
AR + L R+ + + +L++++ G+ T+G K Y+A
Sbjct: 241 TGARTIDEFDGLADRSPVAAGAFGVLAVSMVGVPPTVGFAGKWYIA 286
>gb|AAF21815.1|AF097740_4 (AF097740) multiple resistance and pH regulation related protein D
[Bacillus firmus]
Length = 493
Score = 139 bits (348), Expect = 5e-32
Identities = 128/467 (27%), Positives = 227/467 (48%), Gaps = 55/467 (11%)
Query: 6 MVISPVIFSLLIYIFGTFRIE-GTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGV- 63
+VI P+ L+ +I G+F I + R+ + V + L+ ++L + ++ + G+
Sbjct: 4 LVILPI---LIPFIVGSFLILFAKHHSLQRVISGFAVVGMLLVSIYLAVDVY---QNGIT 57
Query: 64 ---VGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKE----LSLLLLMH 116
+G + GI + D ++ +I +V + + +++ +E +
Sbjct: 58 VLELGNWQAPFGIVLVADLFATMMVILASIVGVVCLFFAFQTISSEREKYYFYPFYFFLL 117
Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMTASYVLILA 171
+G+ GAF++ D FN +VF E+ ++SY LI Q RE+ KY+++++ AS + I+
Sbjct: 118 AGVNGAFLTGDLFNLFVFFEVMLIASYILIVLGGTKYQLRES-LKYVVINVFASILFIVG 176
Query: 172 LGMIYFQTGYLNV-ELASEVGLRDDTPLR--LAAISLI---LKAGIFPLHVWLPDAHSNA 225
+ IY TG LN+ +LA +VG + T + +A I L+ +K G+FPL+ WLP ++
Sbjct: 177 VAYIYSITGTLNMADLAVKVGELEQTGVLNVIAVIFLVVFAMKGGLFPLYFWLPRSYFGP 236
Query: 226 KTYVSSILSGIAVKAPIYGLILLSNL---GDLSFLKPFAI----LSMAFGVIMAILQFNA 278
++++ G+ K IY ++ L D F + L+M FGV+ A+ QF+
Sbjct: 237 PAAIAALFGGLLTKVGIYAIMRTFTLIFNHDPGFTHTLILILAGLTMFFGVLGAVSQFDF 296
Query: 279 KRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDL 335
KR+L+YH +SQ+GY+++GL + GA Y H + K LFL GA DL
Sbjct: 297 KRILSYHIISQVGYMVMGLGIYTQLAIAGAIYYIAHHIIVKAALFLFAGATQRITGTTDL 356
Query: 336 KYLG---SRNILLIVSIAILSLAISGLGITIGGVAKSYLATTE--------KAIIYAVSF 384
K +G + L I +++++G+ G +K L A+ AV
Sbjct: 357 KKMGGLLKTHPWLAWMFFISAISLAGIPPLSGFFSKFALILAAILNENYIIAAVALAVGL 416
Query: 385 GTAFSFSKLNYYLWKG---YGNEPTNFSI----LPSLTLGVLTVLVG 424
T FS K+ Y + G + E NF + LP + L LT+++G
Sbjct: 417 LTLFSMMKIFIYAFWGEQKHTEEQANFKVGKLLLPIVPLVALTIILG 463
>dbj|BAB05035.1| (AP001511) Na+/H+ antiporter [Bacillus halodurans]
Length = 493
Score = 139 bits (347), Expect = 6e-32
Identities = 128/468 (27%), Positives = 216/468 (45%), Gaps = 57/468 (12%)
Query: 6 MVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGV-- 63
+VI P++ ++ F + RF +T + L L +L L++ + G+
Sbjct: 4 LVILPILLPFIVGSFLILFAKHHGIQRFLTAIT--MVGLLLFSFYLATLVY---QEGIYT 58
Query: 64 --VGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKE----LSLLLLMHS 117
+G +P GI + D ++ +I +V A + + +++ +E L + +
Sbjct: 59 LQLGNWPAPFGIVLVADMFATMMIILSSIVGVACLFFAFQTISSERERYYFYPFYLFLIA 118
Query: 118 GLIGAFISKDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMTASYVLILAL 172
G+ GAF++ D FN +VF E+ ++SYALI Q RE+ FKY+++++ AS + I+ +
Sbjct: 119 GVNGAFLTGDLFNLFVFFEVMLIASYALIVLGGTKYQLRES-FKYVVINVFASILFIVGV 177
Query: 173 GMIYFQTGYLN-VELASEVG-LRDDTPLRLAAISLI----LKAGIFPLHVWLPDAHSNAK 226
+Y TG LN +LA V L L + AI + +K +FPL+ WLP ++
Sbjct: 178 AYLYSVTGTLNFADLAIRVAELEQQGVLNVIAILFLVVFGMKGALFPLYFWLPRSYYGPP 237
Query: 227 TYVSSILSGIAVKAPIYGLILLSNL---GDLSF----LKPFAILSMAFGVIMAILQFNAK 279
++++ G+ K IY +I L D SF + A +M FGV+ A+ QF+ K
Sbjct: 238 AAIAALFGGLLTKVGIYAIIRTFTLIFNHDPSFTHTIILALAGFTMFFGVLGAVSQFDFK 297
Query: 280 RLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLK 336
R+L+YH +SQ+GY+++GL + GA Y H + K LFL GA +LK
Sbjct: 298 RILSYHIISQVGYMVMGLGIFTPLALAGAIYYIAHHIIVKAALFLFAGATEKITGTTELK 357
Query: 337 YLGSR-------------NILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYAVS 383
+G + + + I LS S + + G + A+I V
Sbjct: 358 KMGGLLKTHPWLAWLFFISAISLAGIPPLSGFFSKFALILAGFEEGRYVIVTVALI--VG 415
Query: 384 FGTAFSFSKLNYYLWKG-------YGNEPTNFSILPSLTLGVLTVLVG 424
T FS K+ Y + G P +LP L VLT+++G
Sbjct: 416 LLTLFSMMKIFIYAFWGEQKHTEQQAKMPIGKLLLPIAPLVVLTIVLG 463
>pir||F75115 co-induced hydrogenase related, chain M PAB1888 - Pyrococcus abyssi
(strain Orsay) >gi|5458150|emb|CAB49639.1| (AJ248285)
CO-induced hydrogenase related, subunit M [Pyrococcus
abyssi]
Length = 510
Score = 137 bits (341), Expect = 3e-31
Identities = 117/393 (29%), Positives = 193/393 (48%), Gaps = 54/393 (13%)
Query: 85 LIAEFLVFGAS--SLYLVKRVTNW-KELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVS 141
LI F+ F A SL +K T K +L+L++ G++G I+ D FNFYVF+E+ +++
Sbjct: 89 LIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIA 148
Query: 142 SYALIAS-----QDREAAFKYLLLSMTASYVLILALGMIYFQ-----TGYLNVELASEVG 191
SYAL+A + EA KY+ + AS ++L + ++Y Q GYL V+++
Sbjct: 149 SYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYGTLTMGYLAVKMSENPT 208
Query: 192 LRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNL 251
+ L L L+ K+G P+H+WL DAH A + +S++LSG+ +K I G+ ++ +
Sbjct: 209 IVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLVIK--IGGIYAIARV 266
Query: 252 GDLSF---LKP---------FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLST 299
F + P FA +++ G MA++Q + KRLLAY +V Q+GYILLGL
Sbjct: 267 VFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGI 326
Query: 300 GNV-----------YGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYL-GSRNILLIV 347
G V GA +++ HA+ K LFL G ++ ++L L G +
Sbjct: 327 GIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGTRNLNELSGLAKTMPKT 386
Query: 348 SIAILSLAISGLGI-TIGGVAKSYLATTEKAIIYAV-----SFGTAFSFSKLNYYLWKGY 401
+ A L A + +G+ + G A +L A+ + GTAF + L+ +
Sbjct: 387 TFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYVRVLFTFF 446
Query: 402 G---------NEPTNFSILPSLTLGVLTVLVGI 425
G +P +LP L + + +G+
Sbjct: 447 GRPSEKVMKAKDPGATMLLPIFILVIAIIGMGL 479
>pir||S75338 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4, 52K -
Synechocystis sp. (strain PCC 6803)
>gi|1652329|dbj|BAA17252.1| (D90904) NADH dehydrogenase
subunit 4 [Synechocystis sp.]
Length = 487
Score = 130 bits (323), Expect = 4e-29
Identities = 115/369 (31%), Positives = 178/369 (48%), Gaps = 38/369 (10%)
Query: 72 GIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNF 131
G+ LD +S FL+ LV A +Y + + L+++H+ L AF+ D+ +
Sbjct: 71 GVVFQLDALSGYFLLTNALVTLAVLVYCWNTGRSAFFYAQLIILHASLNSAFLCADFMSL 130
Query: 132 YVFMELSAVSSYALIASQDREA-----AFKYLLLSMTASYVLILALGMIYFQTGYLNVEL 186
YV +E+ A++++ L+ + RE +YLLLS TA ++ + ++Y N
Sbjct: 131 YVALEVVAIAAFCLM-TYPREPRIIWLGLRYLLLSNTAMLFYLIGVALVY----KTNQSF 185
Query: 187 ASEVGLRDDTPLRLAAI--SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYG 244
A GL P +A I L+ K GIF +WLP H A T VS++LSG VKA
Sbjct: 186 AFS-GLTQAPPEAIALIFLGLLTKGGIFLAGLWLPQTHGEAATPVSAMLSGAVVKAGALP 244
Query: 245 LILLSNLGD--LSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNV 302
L+ + L D L ++ + + FGV+ A+L ++KR+LA+HTVSQMG++L G
Sbjct: 245 LLRCALLSDQLLLLVQILGVATALFGVVYAMLAKDSKRMLAFHTVSQMGFVLAAPIAGG- 303
Query: 303 YGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNIL--LIVSIAILSLAISGLG 360
Y+L+H + K LFL G + +D K L I V + + S +I+G
Sbjct: 304 ----FYALSHGLVKSSLFLLAGNL----PSRDFKVLKKTPIAAGFWVPLLLASSSIAGFP 355
Query: 361 ITIGGVAKSY----LATTEKAIIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTL 416
+ G AK+ L + + GTA SFSK + +PT L L
Sbjct: 356 LLAGFEAKTLTLKGLPPWLAIALNIAAVGTAISFSKFVFL-------KPTFVGKTYPLGL 408
Query: 417 GV-LTVLVG 424
G+ L VL+G
Sbjct: 409 GLALVVLLG 417
>pir||G71019 hypothetical protein PH1452 - Pyrococcus horikoshii
>gi|3257876|dbj|BAA30559.1| (AP000006) 495aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 495
Score = 129 bits (322), Expect = 5e-29
Identities = 111/399 (27%), Positives = 190/399 (46%), Gaps = 40/399 (10%)
Query: 65 GGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLY---LVKRVTNWKELSLLLLMHSGLIG 121
GG+ +GI + + ++ F++ +V +SL+ +VK K L LL+ G G
Sbjct: 64 GGWRPPVGINLYIGPFAALFILIIAIVSFLTSLFSMRMVKVEPIDKYAMLFLLLMLGATG 123
Query: 122 AFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVLILALGMIYF 177
+ D FN +VFME++A+++YAL A + EA+ KY++L S ++ + +IY
Sbjct: 124 MIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYMILGGIGSSFFLIGVALIYG 183
Query: 178 QTGYLNVELASE-------VGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVS 230
TG LN+ +E + + L L L ++A +FPL+ W PDA+ A ++
Sbjct: 184 VTGTLNMAQLAEFASAGKIMPVVAQVGLSLIIFGLAVEAELFPLNAWAPDAYQAAPHPIT 243
Query: 231 SILSGIAVKAPIYG----LILLSNLGD----LSFLKPFAILSMAFGVIMAILQFNAKRLL 282
+ S VKA +Y L LL + L L A L++ F + A+ Q + KR++
Sbjct: 244 VMFSAFVVKAGLYAMARILYLLQKVNGWDSVLKLLLIMATLTVIFAELSALRQKDVKRMI 303
Query: 283 AYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLFLG---VGAIIDARKRKDLK 336
AY ++ Q+G I L S G G + L HA+ K +FLG VG ++ + +D +
Sbjct: 304 AYSSIGQVGLIALAFSLGTQAGVDAGVFHMLNHAIVKTMMFLGVGYVGVMVGGTRIEDFR 363
Query: 337 YLGSRNILLIVSIAILSLAISGLGITIGGVAKS----YLATTEKAIIYA------VSFGT 386
LG R L +S+++ AIS +G+ + V S +AT + ++ S
Sbjct: 364 GLGKRMPLTALSLSV--GAISTVGVPLFNVFWSKFRIIVATIQAGFVWPAVLVLFASVVE 421
Query: 387 AFSFSKLNYYLWKGYGNEPTNFSILPSLTLGVLTVLVGI 425
A + +L + +W E + L + ++VGI
Sbjct: 422 AVYYFRLLHVMWFAGEGERIKEGWIVVFLLLLALIIVGI 460
>pir||F75113 NADH dehydrogenase I N chain PAB2416 - Pyrococcus abyssi (strain
Orsay) >gi|5458134|emb|CAB49623.1| (AJ248285) NADH
DEHYDROGENASE I N SUBUNIT [Pyrococcus abyssi]
Length = 493
Score = 129 bits (320), Expect = 9e-29
Identities = 108/401 (26%), Positives = 194/401 (47%), Gaps = 40/401 (9%)
Query: 63 VVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNW---KELSLLLLMHSGL 119
+ GG+ +GI + + ++ F++ +V ++++ VK V K L LL+ G
Sbjct: 62 MAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGA 121
Query: 120 IGAFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVLILALGMI 175
G + D FN +VFME++A+++YAL A + EA+ KY++L S ++ + ++
Sbjct: 122 TGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALL 181
Query: 176 YFQTGYLNV----ELASEVG-LRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVS 230
Y TG LN+ EL++ + + L L L ++A +FPL+ W PDA+ A ++
Sbjct: 182 YGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPIT 241
Query: 231 SILSGIAVKAPIYGLILLSNL--------GDLSFLKPFAILSMAFGVIMAILQFNAKRLL 282
+ S VKA +Y + + L L + A L++ F + A+ Q + KR++
Sbjct: 242 VMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMI 301
Query: 283 AYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLFLGVGAI---IDARKRKDLK 336
AY ++ Q+G I L S G G + L HA+ K +FLGVG + + + + +
Sbjct: 302 AYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFE 361
Query: 337 YLGSRNILLIVSIAILSLAISGLGITIGGVAKS----YLATTEKAIIYA------VSFGT 386
LG R + + ++A+ A+S +G+ + V S +AT + I+ S
Sbjct: 362 GLGKR--MPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVE 419
Query: 387 AFSFSKLNYYLWKGYGNE--PTNFSILPSLTLGVLTVLVGI 425
A + +L + +W E + ++ L L VL V +GI
Sbjct: 420 AVYYFRLVHTMWFSGSGERVKEGWIVIFLLLLAVLVVAIGI 460
>gi|11467100 nad4 [Marchantia polymorpha] >gi|464242|sp|P26848|NU4M_MARPO
NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4
>gi|282790|pir||S25942 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 4 - liverwort (Marchantia polymorpha)
mitochondrion >gi|786185|gb|AAC09398.1| (M68929) nad4
[Marchantia polymorpha]
Length = 495
Score = 127 bits (317), Expect = 2e-28
Identities = 105/371 (28%), Positives = 178/371 (47%), Gaps = 38/371 (10%)
Query: 71 IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDY 128
I +G+D +S F+I + L V ++K+ ++ + S LI F S D
Sbjct: 80 INFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDL 139
Query: 129 FNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGY-- 181
FYVF E + + +I S+ R+ AA+++ L ++ S ++LA+ I+FQTG
Sbjct: 140 LIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTD 199
Query: 182 LNVELASEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
L + L +E R L +A S +K + P+H+WLP+AH A T S IL+GI +K
Sbjct: 200 LQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKL 259
Query: 241 PIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI 293
YG + S L F+ +++++ + + I Q + K+++AY +V+ M ++
Sbjct: 260 GTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFV 319
Query: 294 LLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS--------RN 342
+G+ + N+ G+ L L+H + LFL VGA+ D K + +KY G
Sbjct: 320 TIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFST 379
Query: 343 ILLIVSIAILSLA-----ISGLGITIGGVAKSYLATTEKAIIYAVSFGTAFSFSKLNYYL 397
I L ++A +SL I I +G ++ L T A+ + G A+S N +
Sbjct: 380 IFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAAL--GMILGAAYSLWLYNRVV 437
Query: 398 WKGYGNEPTNF 408
+GN NF
Sbjct: 438 ---FGNFKPNF 445
>pir||H82494 probable NADH dehydrogenase VCA0155 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657544|gb|AAF96068.1|
(AE004356) NADH dehydrogenase, putative [Vibrio
cholerae]
Length = 498
Score = 126 bits (313), Expect = 6e-28
Identities = 114/428 (26%), Positives = 199/428 (45%), Gaps = 49/428 (11%)
Query: 65 GGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELS----LLLLMHSGLI 120
G +P GI D +S ++ ++ S +Y + ++ + LL ++ +G+
Sbjct: 63 GQWPAPFGIVFVADLLSVGMVMVTAIIGLVSVIYAIADLSAKPSYARYHALLHVLLAGVY 122
Query: 121 GAFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVLILALGMIY 176
GAF++ D FN YV+ E+ ++S+ L+ Q + A KY+LL++ ++ V +L++G++Y
Sbjct: 123 GAFLTGDIFNLYVWFEVMLIASFGLMVLDANQQQIDGAIKYVLLNLISTLVFLLSIGLLY 182
Query: 177 FQTGYLNV-ELASEV-GLRDDTPLRLAAISLI---LKAGIFPLHVWLPDAHSNAKTYVSS 231
TG LN+ +L + L + LA + L +KA +FPL WLP ++ + + +
Sbjct: 183 GATGTLNLADLHDKAQSLAPEMKTMLAGLLLFAFSIKAALFPLFAWLPASYHTLPSAIVA 242
Query: 232 ILSGIAVKAPIYGLILLSNL-------GDLSFLKPFAILSMAFGVIMAILQFNAKRLLAY 284
+ + + K +Y L+ + L G L A L+M GV+ A Q++ K++L++
Sbjct: 243 LFAALLTKVGVYALLRVFTLVFPLDGSGWQPVLLGIAALTMLTGVLGAASQYDIKKILSF 302
Query: 285 HTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS- 340
H +SQ+GY+++GL+ + GA Y + H + KG LFL G I L LG
Sbjct: 303 HIISQIGYMIMGLAIYTPLAITGAIFYVIHHILVKGNLFLIGGLIGRKYGTTQLTQLGGV 362
Query: 341 RNILLIVSIAILSLAISGLGI-TIGG------VAKSYLATT---EKAIIYAVSFGTAFSF 390
+ ++ L A S G + G V K+ LA AI V T FS
Sbjct: 363 YRAMPWLTFGFLLAAFSLAGFPPLSGFWGKFLVIKASLAAELYWLAAIALLVGLLTIFSM 422
Query: 391 SKL-NYYLWKG---------YGNEPTNFSILPSLTLGVLTVLVGIELG-----GKLSKYD 435
+K+ N WK LP L L + ++++G+ L+
Sbjct: 423 TKIWNEVFWKDAPAALQQETLARSTLGLYALPILVLTLFSLVIGLAAQPFYQFATLAAEQ 482
Query: 436 LLIPLAFL 443
LL P A++
Sbjct: 483 LLTPTAYI 490
>pir||S74687 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4.2 -
Synechocystis sp. (strain PCC 6803)
>gi|1651912|dbj|BAA16838.1| (D90901) NADH dehydrogenase
subunit 4 [Synechocystis sp.]
Length = 559
Score = 124 bits (308), Expect = 2e-27
Identities = 107/353 (30%), Positives = 166/353 (46%), Gaps = 42/353 (11%)
Query: 74 EVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKE-------LSLLLLMHSGLIGAFISK 126
+ GL W S I+ LV A + + W+ L+L++++ IG F+++
Sbjct: 74 QFGLSWSVSVDGISMPLVLLAGLVTTLSIFAAWQVDHKPRLFYFLMLVLYAAQIGVFVAQ 133
Query: 127 DYFNFYVFMELSAVSSYALIA---SQDRE-AAFKYLLLSMTAS-YVLILALGMIYFQTGY 181
D ++ EL V Y L+ Q R+ AA K+LL + AS ++L+ ALG+ ++ G
Sbjct: 134 DMLLLFIMWELELVPVYLLVCIWGGQKRQYAAMKFLLYTAAASVFILVAALGLAFY--GD 191
Query: 182 LNVELASEVGLRDDTPLRLAA-------ISLILKAGIFPLHVWLPDAHSNAKTYVSSILS 234
+ +E+GL+D P+ L I+ +K IFP H WLPDAH A VS IL+
Sbjct: 192 VTTFDIAELGLKD-YPIALELFLYAGLLIAFGVKLAIFPFHTWLPDAHGEASAPVSMILA 250
Query: 235 GIAVKAPIYGLILLSNLGDLS--------FLKPFAILSMAFGVIMAILQFNAKRLLAYHT 286
G+ +K YGLI L NLG L L ++++ +G + Q N KR LAY +
Sbjct: 251 GVLLKMGGYGLIRL-NLGLLEDAHVYFAPILVILGVVNIIYGGFSSFAQDNMKRRLAYSS 309
Query: 287 VSQMGYILLGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRN- 342
VS MG++LLG+++ + GA L L+H + LF G D L +G+
Sbjct: 310 VSHMGFVLLGIASFTDLGISGAMLQMLSHGLIAAVLFFLAGVTYDRTHTLSLAQMGNIGK 369
Query: 343 -----ILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYAVSFGTAFSF 390
L A+ SLA+ G+ + +A + IY+ F T F
Sbjct: 370 VMPTVFALFTMGAMASLALPGMSGFVSELA--VFVGVSSSDIYSTPFKTVTVF 420
>gi|11465635 NADH dehydrogenase subunit 4 [Porphyra purpurea]
>gi|7432354|pir||T11230 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 4 - red alga (Porphyra purpurea)
mitochondrion >gi|4106942|gb|AAD03109.1| (AF114794) NADH
dehydrogenase subunit 4 [Porphyra purpurea]
Length = 488
Score = 124 bits (308), Expect = 2e-27
Identities = 111/390 (28%), Positives = 185/390 (46%), Gaps = 32/390 (8%)
Query: 75 VGLDWVSSTFLI-AEFLVFGASSLYLVKRVTNWKE-LSLLLLMHSGLIGAFISKDYFNFY 132
+G+D +S F+I +LV + T KE L L + LI F D FY
Sbjct: 79 IGIDGISLFFIILTTWLVTTCVLISWTMINTQIKEYLICFLTLEFILIQVFCVLDVIFFY 138
Query: 133 VFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGYLNVELA 187
+F E + + +I S+ R+ AA+++ + ++ S +++LA+ +IYFQ G ++++
Sbjct: 139 IFFESVLIPMFLIIGIWGSRQRKIRAAYQFFIYTLAGSLLMLLAILVIYFQQGTTDIQIL 198
Query: 188 SEVGLRDDTPLRLAAI---SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYG 244
V T + L SL +K + P H+WLP+AH+ A T S IL+G+ +K YG
Sbjct: 199 WNVSFDTRTQILLWLSFFSSLAVKIPMIPFHIWLPEAHAEAPTAGSVILAGVLLKMGGYG 258
Query: 245 LILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGL 297
+ S +L + +I++ + + I Q + K+++AY +VS MG++ LGL
Sbjct: 259 FLRFSLPMLPEASLYFSPLIYLLSIVAAVYASLTTIRQVDLKKIIAYSSVSHMGFVTLGL 318
Query: 298 STGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSR-NILLIVSIAILS 353
+ N+ G+ + L+H + LFL VG + D K + LKY G ++ I SI +L
Sbjct: 319 FSFNLQGLEGSIILMLSHGLVSSALFLCVGILYDRHKTRILKYYGGLVQVMPIFSILLLF 378
Query: 354 LAISGLGI--TIGGVAKSYLATTEKAIIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSIL 411
S +G T V + + T + +F +AFS L GY N
Sbjct: 379 FTFSNIGFPGTSSFVGEFLVLTGLFKVSSISTFLSAFSM-----ILGAGYSIWLFNRICF 433
Query: 412 PSLTLGVLTVLVGIELGGKLSKYDLLIPLA 441
SL L +T I ++ +L+PLA
Sbjct: 434 GSLKLQYVTNFQDI----SRREFYILLPLA 459
>pir||B70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoM1 -
Aquifex aeolicus >gi|2983743|gb|AAC07304.1| (AE000734)
NADH dehydrogenase I chain M [Aquifex aeolicus]
Length = 491
Score = 123 bits (306), Expect = 4e-27
Identities = 90/290 (31%), Positives = 144/290 (49%), Gaps = 40/290 (13%)
Query: 71 IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWK-------ELSLLLLMHSGLIGAF 123
IG VG+D ++ + L+ S L+L + +WK +L L + + IG F
Sbjct: 71 IGYHVGVDGMAIS------LILMTSILFLAAYIWSWKIEDRPSLYFALFLALETACIGVF 124
Query: 124 ISKDYFNFYVFMELSAVSSYALIA--SQDRE--AAFKYLLLSMTASYVLILALGMI---- 175
+ D F FY+F E + Y +I DR+ AA K+ L + S L+L + I
Sbjct: 125 AALDLFLFYLFWEGMLIPMYFIIGFWGHDRKVYAANKFFLYTFFGSLFLLLGIASILVYG 184
Query: 176 YFQTGYLNVELASEVGLRDDTPLRLAAISLIL-------KAGIFPLHVWLPDAHSNAKTY 228
YF+TG ++ + +GL D PL L I+ +L K ++P H WLPDAH A T
Sbjct: 185 YFETGKISFDYFFHLGL--DYPLWLELIAFLLFGIGFAVKIPMWPFHTWLPDAHVEAPTA 242
Query: 229 VSSILSGIAVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRL 281
S IL+G+ +K YG + S + + + +++++ + +MAI Q + KRL
Sbjct: 243 GSVILAGVLLKMGTYGFVRFSLPFFPEASKYYIPLIFTLSVVAVIYAAMMAIAQTHMKRL 302
Query: 282 LAYHTVSQMGYILLG---LSTGNVYGATLYSLAHAMFKGGLFLGVGAIID 328
+AY ++S MG + LG +++ + GA +AH + LFLG G I D
Sbjct: 303 IAYSSISHMGLVTLGTFAMNSDALNGAIYLMIAHGLSSAALFLGAGFIYD 352
>gb|AAF03176.1|AF110138_8 (AF110138) NADH dehydrogenase subunit 4 [Nephroselmis olivacea]
Length = 500
Score = 123 bits (305), Expect = 5e-27
Identities = 100/373 (26%), Positives = 178/373 (46%), Gaps = 46/373 (12%)
Query: 73 IEVGLDWVS------STFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISK 126
I +G+D +S STFL+ ++ G S+ R + + L++ S +I F
Sbjct: 87 IYMGIDGISLFFVILSTFLVPICILVGWVSIQTYVR----EYVIAFLILESCMIAVFCML 142
Query: 127 DYFNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGY 181
D FYVF E + + +I S++R+ AA+++ L ++ S +++LA+ +IYFQTG
Sbjct: 143 DLLLFYVFFESVLIPMFLIIGIWGSRERKIRAAYQFFLYTLFGSVLMLLAIILIYFQTGT 202
Query: 182 LNVELASEVGLRDDTPLRLAAI---SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAV 238
++++ + + L S +K + P+H+WLP+AH A T S IL+G+ +
Sbjct: 203 TDLQVLYTTSFSEKRQILLWLAFFASFAVKVPMVPVHIWLPEAHVEAPTSGSVILAGVLL 262
Query: 239 KAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMG 291
K YG + S +L + +I+++ + + I Q + K+++AY +V+ M
Sbjct: 263 KLGTYGFLRFSIPMFPEASLYFTPLIYTMSIIAVIYASLTTIRQIDLKKVIAYSSVAHMA 322
Query: 292 YILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS-RNILLIV 347
++ +GL + NV G+ L L+H + LFL VG + D K + + Y G+ + + I
Sbjct: 323 FVTIGLFSLNVQGIEGSILLMLSHGLVSSALFLCVGCLYDRHKTRLIPYYGACVHTMPIF 382
Query: 348 SIAILSLAISGLG------------ITIGGVAKSYLATTEKAIIYAVSFGTAFSFSKLNY 395
S+ L + L I +G + L TT A + G A+S N
Sbjct: 383 SVIFLFFTLGNLSLPGTSSFVGEFLILVGAFQNNTLITTLAAT--GMVLGAAYSLWLYNR 440
Query: 396 YLWKGYGNEPTNF 408
+ +GN NF
Sbjct: 441 VV---FGNFKPNF 450
>gi|8954372 NADH dehydrogenase subunit 4 [Cyanidioschyzon merolae]
>gi|7432334|pir||E58931 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 4 - Cyanidioschyzon merolae
mitochondrion >gi|4115785|dbj|BAA36523.1| (D89861)
NADH-ubiquinone oxidoreductase chain 4 [Cyanidioschyzon
merolae]
Length = 492
Score = 123 bits (305), Expect = 5e-27
Identities = 100/392 (25%), Positives = 189/392 (47%), Gaps = 44/392 (11%)
Query: 75 VGLDWVSSTFLIAEFLVFGASSL--YLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFY 132
+G+D +S F+I L+ L + N + L L ++ S L+ AF + D FY
Sbjct: 83 LGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFY 142
Query: 133 VFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGYLNVELA 187
+F E + + +I S+ R+ A++++ L ++ S ++++A+ +IYF+TG N+
Sbjct: 143 IFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFL 202
Query: 188 SEVGLRDDTPLRLAAI---SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYG 244
V + L L S +K + P H+WLP+AH+ A T S IL+GI +K YG
Sbjct: 203 YNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYG 262
Query: 245 LILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGL 297
+ S + + +I+++ + + + Q + K+++AY +++ +GY++LG+
Sbjct: 263 FLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGI 322
Query: 298 STGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYL-GSRNILLIVSIAILS 353
+ NV G+ L L H LFL VG + D K + LKY G + + ++ +
Sbjct: 323 FSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFF 382
Query: 354 LAISGLG------------ITIGGVAKSYLAT--TEKAIIYAVSF------GTAFSFSKL 393
++ +G I IG + S +AT + II + S+ F K
Sbjct: 383 FTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKE 442
Query: 394 NYYLWKGYGNEPTNFSILPSLTLGVLTVLVGI 425
NY+ + ++ +++P L +LT+++G+
Sbjct: 443 NYFKFLQDISKKEFMALIP---LVILTLIMGL 471
>gi|9653250 NADH dehydrogenase subunit 4 [Chondrus crispus]
>gi|1352567|sp|P48915|NU4M_CHOCR NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4 >gi|7432305|pir||S59107 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - red
alga (Chondrus crispus) mitochondrion
>gi|1334501|emb|CAA87623.1| (Z47547) NADH dehydrogenase
(ubiquinone), subunit 4 [Chondrus crispus]
Length = 492
Score = 120 bits (297), Expect = 5e-26
Identities = 101/396 (25%), Positives = 189/396 (47%), Gaps = 34/396 (8%)
Query: 75 VGLDWVSSTFLIAEFLVFGASSLYLVKRV-TNWKE-LSLLLLMHSGLIGAFISKDYFNFY 132
+G+D +S F++ L+ + L + TN K+ L L++ LI F D FY
Sbjct: 81 IGIDGISLFFILLTTLLIISCILVSWSSIQTNLKDYLICFLILEFLLIQVFSVLDLLLFY 140
Query: 133 VFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGYLNVELA 187
++ E + + ++ S+ R+ AA+++ L ++ S +++LAL IYFQTG ++++
Sbjct: 141 IYFESVLIPMFLIVGVWGSRQRKIRAAYQFFLYTLIGSLLMLLALLNIYFQTGTTDLQIL 200
Query: 188 SEVGLRDDTPLRLAA---ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYG 244
+ + + + L S +K + P H+WLP+AH+ A T S IL+GI +K YG
Sbjct: 201 WYIQFSEISQIFLWLSFFASFAVKIPMIPFHIWLPEAHAEAPTAGSVILAGILLKMGGYG 260
Query: 245 LILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGL 297
+ S ++ F+ +++++ + + + Q + K+++AY +VS MG++ +G+
Sbjct: 261 FLRFSLPMFPVASIFFTPFIFTLSLVAIIYASLTTLRQIDLKKIIAYSSVSHMGFVTIGI 320
Query: 298 STGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYL-GSRNILLIVSIAILS 353
+ N+ G+ L L+H + LFL +G + D K + +KY G ++ + + L
Sbjct: 321 FSLNIQGIEGSILLMLSHGLVSSALFLCIGVLYDRYKTRVIKYYSGLIQVMPLFGVFFLF 380
Query: 354 LAISGLGITIGGVAKSYLATTEKAIIYAVSF---GTAFSFSKLNYYLWKGYGNEPTNFSI 410
+ LG S++ + ++ SF T F+ L Y N I
Sbjct: 381 FTFANLGFP---GTSSFIG---EVLVLLSSFQINKTLTLFASLGMIFGAAYSIWLFNRII 434
Query: 411 LPSLTLGVLTVLVGIELGGKLSKYDLLIPLAFLTFY 446
SL LG + I ++ +LIPLA L +
Sbjct: 435 FGSLKLGYFSSFQDI----SRREFWILIPLAILILW 466
>gb|AAK41287.1| NADH-Ubiquinone/plastoquinone related [Sulfolobus solfataricus]
Length = 440
Score = 118 bits (293), Expect = 1e-25
Identities = 99/374 (26%), Positives = 174/374 (46%), Gaps = 31/374 (8%)
Query: 84 FLIAEFLVFGASSLYLVKRVTNWKELS------LLLLMHSGLIGAFISKDYFNFYVFMEL 137
FL+ ++ S+LY + + K +S LL S ++ I +Y +V +EL
Sbjct: 63 FLLVIASIYLLSTLYSMNYIKPSKIVSERLYYILLNSFASSMLFTVIMNNYGLMWVGVEL 122
Query: 138 SAVSSYALIASQ----DREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVE---LASEV 190
+ V+S LI ++ EA ++Y+++ + + ++ IY+ L V E
Sbjct: 123 TTVTSALLIIAEASETSLEATWRYIIIVSAGVTLALFSIIFIYYNYHTLTVTEILTKPEN 182
Query: 191 GLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSN 250
+ + LA I KAG+FP++ WLPDAHS A + +S++ SG+ + A Y + ++
Sbjct: 183 NIITKLAVALALIGFGTKAGVFPMYTWLPDAHSEAPSPISALFSGVLLPAATYVVYMVYQ 242
Query: 251 LGDLS-FLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYS 309
+ L+ F LS+ I+ Q++ KR+ AY T+ M LLGL+ G GA +
Sbjct: 243 VNPLTNIFVIFTTLSIITASIILTYQWHIKRMFAYSTIENMNLALLGLTIGQPLGAIILL 302
Query: 310 LAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNI---LLIVSIAILSLAISGLGITIGGV 366
LAHA K G F G ++ K ++ +G + L VS+ + SLA++G +
Sbjct: 303 LAHAFGKAGAFYSSGIVLKVLGEKRIENIGGLHTKLKLTSVSLLLSSLAVTGTPPFATFI 362
Query: 367 AKSYLATTEKAIIYAVSF-----GTAFSFSKLNYYLWK--------GYGNEPTNFSILPS 413
+ ++ T Y + F A +F +NY + K EP + + S
Sbjct: 363 GEFFILQTLIQKGYIIEFILIVISLATAFISINYNVTKMIFTQRELTVSEEPKLITFI-S 421
Query: 414 LTLGVLTVLVGIEL 427
L ++ +++GI L
Sbjct: 422 LVSSIIPLVLGILL 435
>pir||D64463 conserved hypothetical protein MJ1309 - Methanococcus jannaschii
>gi|1591948|gb|AAB99316.1| (U67571) carbon monoxide
dehydrogenase, hydrogenase anchor subunit CooM (cooM)
[Methanococcus jannaschii]
Length = 481
Score = 117 bits (291), Expect = 2e-25
Identities = 124/473 (26%), Positives = 218/473 (45%), Gaps = 72/473 (15%)
Query: 5 IMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRG-GV 63
+M++ P+I ++++ + + G +A + T+ A+ ++ F+ + G GV
Sbjct: 6 MMIVFPLIMAIIMNL-----LHGKEKAVKYI--TFITAAILIILPFISQYGYYYFGGHGV 58
Query: 64 VGGY---------PREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLL 114
V G+ P + I V L ++S LI + +++ N ++L L+
Sbjct: 59 VNGWVSGIAYLYNPAKQAIIVTLSLIASLVLITG----------MGEKLKNNMFVTLSLM 108
Query: 115 MHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFK----YLLLSMTASYVLIL 170
+ + ++ D FN YVF E+ ++ L+ E A+K Y+++ A+ +++L
Sbjct: 109 GFASIAAIVLADDIFNLYVFFEIVSIVQAGLVFLSGTEEAYKAGLRYMIMGNVAAALMLL 168
Query: 171 ALGMIYFQTGYLNVELASEVGLRDDTP----LRLAAISLILKAGIFPLHVWLPDAHSNAK 226
+ + TG LN+ L D+ L L + L AG+ P H D ++ +K
Sbjct: 169 GIAFLLASTGTLNITDMKHYLLVDNPMIYGGLLLLIVGLAYGAGLPPFHNVKADLYARSK 228
Query: 227 TYVSSILSGIAVKAPIYGL--ILLSNLGDLSF-------LKPFAILSMAFGVIMAILQFN 277
++S++L + K + GL I+L L + L +L+M FGV+MA+LQ +
Sbjct: 229 GFISAMLQTYS-KFVLVGLMIIILKLFNGLDYFASAHAVLIALGVLAMVFGVVMALLQSD 287
Query: 278 AKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLFLGVGAIIDARKRKD 334
K+LLAYH +SQ GY+ GL+ G G +++ H ++K LFLG I+ ++ +
Sbjct: 288 YKKLLAYHAISQGGYVATGLALGTPLGIVAGIFHAINHVIYKSALFLG-AYIVSCKRGSN 346
Query: 335 LKYLGSRNILLIVSIAIL----SLAISGLGITIGGVAKSYLATT-------EKAII-YAV 382
L LG + L+ S+A + LAISG+ G +K LA E AII V
Sbjct: 347 LHKLGGL-LPLMPSVAFMVLCAKLAISGIPPFNGFQSKWMLAQAAMQVNMPEIAIIMIIV 405
Query: 383 SFGTAFSFSKLNYYLW---------KGYGN-EPTNFSILPSLTLGVLTVLVGI 425
S GT S K Y ++ K Y N E ++ L L +++G+
Sbjct: 406 SIGTFVSMMKAFYLIYLKPVDEETLKEYQNKEVPKLAVFSLFVLTALCIIIGL 458
>emb|CAC08260.1| (AL392146) NADH dehydrogenase subunit [Streptomyces coelicolor]
Length = 534
Score = 117 bits (290), Expect = 3e-25
Identities = 91/311 (29%), Positives = 155/311 (49%), Gaps = 38/311 (12%)
Query: 70 EIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKE------------LSLLLLMHS 117
++ I +G+D +S L+ L+ +LY + + + ++LLL++ S
Sbjct: 87 DVRIHLGIDGISLPLLVLTALLTFLCALYSYLKQRHERLTPRAPGPSPKAFVALLLVLES 146
Query: 118 GLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILALG 173
G + F D F++ E+ + Y LIA E AA+K++L ++ S V++L L
Sbjct: 147 GTLATFAVLDLILFFLAFEMVLIPMYFLIARWGGEGRAGAAWKFILFTLLGSVVMLLGLL 206
Query: 174 MIYFQTGYLN-VELASEVGLRDDTPLRLAAI-----SLILKAGIFPLHVWLPDAHSNAKT 227
+I G + V LA++ G T +++ A+ L +K ++PLH WLPDAH+ A T
Sbjct: 207 LIGITAGTFDMVALATDNGRSLTTSVQVIAVLAIGLGLAVKTPMWPLHSWLPDAHTAAPT 266
Query: 228 YVSSILSGIAVKAPIYGLI-LLSNLGDLSF------LKPFAILSMAFGVIMAI------L 274
S +L+G+ +K YG I +L + F L FA++ + +G + +
Sbjct: 267 VGSVLLAGVLLKMGTYGFIRILLPVAPEGFRIFAPYLAAFAVVGIIYGSLACLALARRGA 326
Query: 275 QFNAKRLLAYHTVSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAIIDARK 331
+ + KRL+AY +V MG++LLG++T V GA ++AH + G LF VGA+ D
Sbjct: 327 KGDLKRLIAYSSVGHMGFVLLGVATMTPTGVNGALFANIAHGLITGLLFFVVGALKDRTG 386
Query: 332 RKDLKYLGSRN 342
DL L +
Sbjct: 387 TTDLDTLAEES 397
>emb|CAC14150.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 491
Score = 116 bits (289), Expect = 4e-25
Identities = 88/309 (28%), Positives = 152/309 (48%), Gaps = 38/309 (12%)
Query: 75 VGLDWVSSTFLIAEFLVFGASSLYLVKRVTNW-------KELSL-LLLMHSGLIGAFISK 126
+G+D +S+ FL F + L L+ + +W KE + LL+M + ++G F +
Sbjct: 76 LGVDGISALFL------FLTALLSLISVLASWVAIDRKVKEFMVSLLVMQALMLGVFCAL 129
Query: 127 DYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILALGMIYFQTGYL 182
D F FYVF E + Y +I E AAFK+ L ++ S + ++ + ++YFQ G
Sbjct: 130 DLFLFYVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFLYTLAGSILFLIGVIVLYFQGGE- 188
Query: 183 NVELASEVGLRDDTPLRLAA-------ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSG 235
++ + G D P + + ++ +K + P+H WLPDAH A T S IL+G
Sbjct: 189 TFDILALTG--QDLPFGVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQAPTAGSIILAG 246
Query: 236 IAVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVS 288
+ +K YG + S +L + + + L++ +G ++A+ Q + K+L+AY ++S
Sbjct: 247 VLLKMGAYGFLRFSLPMLPEASLYYSTLMLALSALAIVYGGLLALAQDDLKKLVAYSSIS 306
Query: 289 QMGYILLG---LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
MG++ LG L+ + G+ L H + G LFL VG I + + + G
Sbjct: 307 HMGFVTLGIFALNLRGLEGSILQMFNHGITTGALFLFVGLIYERTHTRSIANYGGLMKAA 366
Query: 346 IVSIAILSL 354
V A L+L
Sbjct: 367 PVYTAFLAL 375
>pir||H82822 NADH-ubiquinone oxidoreductase, NQO14 subunit XF0318 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105141|gb|AAF83129.1|AE003884_14 (AE003884)
NADH-ubiquinone oxidoreductase, NQO14 subunit [Xylella
fastidiosa]
Length = 485
Score = 115 bits (286), Expect = 9e-25
Identities = 114/386 (29%), Positives = 185/386 (47%), Gaps = 42/386 (10%)
Query: 46 LLGVFLPMLLFPLSRGGVV--GGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRV 103
+LGV L ML+ + G G + R+ +V V + A LV+G S YL +R
Sbjct: 51 ILGVVLSMLVAGVGGQGAAFHGMFVRDSAADVMK--VVIVLVSALSLVYGWS--YLRERN 106
Query: 104 TNWKELSLLLLMHS-GLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKY 157
E+ +L+L + G++ + Y+ +EL A+ SYAL+A EAA KY
Sbjct: 107 LFQGEIPVLVLFATLGMMVLVSAGHLLMVYLGLELLALCSYALVAVNRDSKISTEAAMKY 166
Query: 158 LLLSMTASYVLILALGMIYFQTGYLNVELASEV--GLRDDTPLRLAAISLI----LKAGI 211
++L AS +L+ + +IY TG L++ S++ G + T L + LI K G
Sbjct: 167 IVLGSLASGLLLYGMSLIYGATGTLSLPGISDMIHGSSEKTLLLTGTVFLIAGVAFKLGA 226
Query: 212 FPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGL---ILLSNLGDLS-----FLKPFAIL 263
P H+WLPD + A T + +S A K +G+ +L +G LS A
Sbjct: 227 APFHMWLPDVYQGAPTPIVLFISS-APKLAAFGMAYRLLEVGVGPLSPQWHLIFGGLAAF 285
Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLF 320
S+ G +MAI+Q N KR+LAY TVS +G++++G+S G ++G A Y L++A+ F
Sbjct: 286 SLVIGNLMAIVQTNLKRMLAYSTVSHVGFLMMGVSGGGIHGYSSAMFYVLSYAIMSTASF 345
Query: 321 LGVGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL-- 371
GAII +A D K L +R+ + + + +++GL +G K +
Sbjct: 346 ---GAIIALSRRGSEAENIDDFKGLSTRHPWMAALLLCVMASLAGLPPFLGFWTKLAVLG 402
Query: 372 ATTEKAIIYAVSFGTAFSFSKLNYYL 397
A + +++ G + YYL
Sbjct: 403 AAVQGGMLWLAILGVICAVIGAYYYL 428
>pir||B72281 hypothetical protein TM1212 - Thermotoga maritima (strain MSB8)
>gi|4981765|gb|AAD36287.1|AE001778_8 (AE001778) NADH
dehydrogenase, putative [Thermotoga maritima]
Length = 626
Score = 115 bits (285), Expect = 1e-24
Identities = 106/394 (26%), Positives = 182/394 (45%), Gaps = 55/394 (13%)
Query: 45 YLLGVFLPMLLFPLSRGGVVGGYPRE--IGIEVGLDW--VSSTFLIAEFLVFGASSLYLV 100
+L G+F + +F L VG + + G+ + +W VS F LV + L+
Sbjct: 33 FLAGLFTILYVFTLK----VGTFEKLDLFGLNIQFEWTNVSFYFSFVSLLVIVSVMLFST 88
Query: 101 KRVTNWKELS----LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREA--- 153
K + K + LL++ +G +G F++ D YVF E++ +SS ++ + +EA
Sbjct: 89 KWLETQKYRASYNMFLLMVTAGSLGVFMAADLITLYVFWEIAVLSSLLIVPMEKKEARKA 148
Query: 154 AFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPL--RLAAISL-----I 206
Y ++S +Y + + Y + G LN+ ++ G+ +DT + ++A L I
Sbjct: 149 VVVYAVMSAVGTYAFLYGTFLAYQRYGTLNIHGIAQ-GMLNDTSIGFKMAVFLLLSAAGI 207
Query: 207 LKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIY-GLILLSNLGDLSFLKPFAI--- 262
K+GIFPLH+WL + H A SS+LSG +K Y L++LS + L +
Sbjct: 208 AKSGIFPLHIWLRETHGLAPNAFSSVLSGQFIKLGNYIFLLVLSVIPSLKVFSEVTVYSG 267
Query: 263 -------------LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGAT 306
+S+ G +MAI Q + K L+AY +V+ GYIL+G+ T + G
Sbjct: 268 IPLPNYILIALGNVSIVIGTLMAIKQDDMKMLMAYSSVANGGYILIGIGTMDPLGFEGGM 327
Query: 307 LYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS-----RNILLIVSIAILSLAISGLGI 361
+ HA+ +F+ A+I K + + +G L+ +I+SLA G+
Sbjct: 328 FHIFNHAVASAVIFMAFAAVIYRTKTQKISEMGGLIHKMPVTFLVYLFSIISLA--GIPP 385
Query: 362 TIGGVAK--SYLATTEKAII---YAVSFGTAFSF 390
G ++K Y A K + + FG+ SF
Sbjct: 386 MSGFISKWMIYQALVRKGMFITAFLAFFGSIGSF 419
>emb|CAB07908.1| (Z93932) unknown [Bacillus subtilis]
Length = 480
Score = 115 bits (284), Expect = 2e-24
Identities = 90/338 (26%), Positives = 166/338 (48%), Gaps = 31/338 (9%)
Query: 64 VGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSL----LLLMHSGL 119
+GG+ GI + D +S ++ ++ LY + V +E S + + +G+
Sbjct: 61 LGGWKAPYGIVLAADQFASLLVLTTAIIGLLVGLYSFRSVGEKRERSFYYSGVQFLLAGV 120
Query: 120 IGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGM 174
GAF++ D FN YVF EL ++SY LI Q RE + KY++ ++ +S + ++ +G
Sbjct: 121 SGAFLTGDLFNMYVFFELLLIASYMLIVLGGTKIQLRE-SLKYIVFNIVSSALFVIGVGF 179
Query: 175 IYFQTGYLNV-ELASEVGLRDDTPLRLAAISLIL------KAGIFPLHVWLPDAHSNAKT 227
+Y TG LN+ +L+ ++ T L + I ++L K GIFPL+ WLP ++
Sbjct: 180 LYAVTGTLNMADLSVKISESGQTGL-ITVIGVLLLLVFGMKGGIFPLYFWLPGSYYAPPA 238
Query: 228 YVSSILSGIAVKAPIYGL---ILLSNLGDLSFLKP----FAILSMAFGVIMAILQFNAKR 280
+S++ + K +Y + L + D +F A L++ FGVI ++ N +
Sbjct: 239 AISALFGALLTKVGLYAITRVFTLIFIHDTAFTHQLMIWLAALTVIFGVIGSLAYSNVMK 298
Query: 281 LLAYHTVSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKY 337
++ Y+ ++ +G IL G++ ++ GA Y + + KG LF+ G +I L
Sbjct: 299 IVIYNIITAVGVILFGVAVHTPASIQGAIYYLIHDMLIKGALFMLAGTLIALTGTASLHK 358
Query: 338 LG---SRNILLIVSIAILSLAISGLGITIGGVAKSYLA 372
+G R +L I +++++G+ G V K +A
Sbjct: 359 MGGLIKRYPVLGWMFFISAISLAGIPPLSGFVGKFKIA 396
>gb|AAF65740.1|AF228525_10 (AF228525) F420H2 dehydrogenase subunit FpoM [Methanosarcina mazei]
Length = 495
Score = 115 bits (284), Expect = 2e-24
Identities = 93/342 (27%), Positives = 159/342 (46%), Gaps = 47/342 (13%)
Query: 71 IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKE--------LSLLLLMHSGLIGA 122
+ VG+D VS ++ +V L+ WKE L+L M + +IG
Sbjct: 71 VNYSVGIDGVSMPLILLNAIVIPFMILF------TWKEEMESPNRFYGLILTMQAAVIGV 124
Query: 123 FISKDYFNFYVFMELSAVSSYALI----ASQDREAAFKYLLLSMTASYVLILALGMIYF- 177
F++ D+ FY+F EL+ V + ++ + A++K+ + + AS V++L + +++
Sbjct: 125 FVALDFVVFYIFWELTLVPLFFIVNLWGGANRAHASYKFFIYTHVASLVMLLGIFGLFYT 184
Query: 178 ---QTGYLNVELAS--------EVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAK 226
QTG ++ E GL D + K FP H WLPDA+S A
Sbjct: 185 ALNQTGVPTFDIRELIAQFQFFEPGLMKDGIFLAILFGFLAKLPAFPFHSWLPDAYSEAP 244
Query: 227 TYVSSILSGIAVKAPIYGLI-----LLSNLGD----LSFLKPFAILSMAFGVIMAILQFN 277
T S + I +K YGL +L N G + L +S+ +G ++A+ Q +
Sbjct: 245 TAGSILF--ILLKIGGYGLFRISLPMLPNTGSPQLMIMILGLLGSVSILYGALLALRQKD 302
Query: 278 AKRLLAYHTVSQMGYILL---GLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKD 334
KR++AY ++S MGY++L GL T +V GA +H + +F+ GAI A +
Sbjct: 303 LKRMIAYSSLSHMGYVILGSAGLVTLSVSGAMFQQFSHGLIMSIMFMSAGAIQTAAGTRI 362
Query: 335 LKYLG---SRNILLIVSIAILSLAISGLGITIGGVAKSYLAT 373
+ LG + +L V++ + +A GL G +A+ + T
Sbjct: 363 INELGGLAKKMPMLTVAMMVGFMASLGLPGLTGFIAEFLVLT 404
>gb|AAG19146.1| (AE005012) F420H2:quinone oxidoreductase chain M; NuoM
[Halobacterium sp. NRC-1]
Length = 519
Score = 114 bits (283), Expect = 2e-24
Identities = 92/362 (25%), Positives = 167/362 (45%), Gaps = 45/362 (12%)
Query: 68 PREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKE-----LSLLLLMHSGLIGA 122
P + VG+D +S ++ ++ ++L + T E +L+LLM + L+G
Sbjct: 73 PYTLNWHVGIDGISMPLVVLSTVL---TTLAITSAWTPIDERQSQFYALMLLMEASLLGV 129
Query: 123 FISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVLILALGMIYFQ 178
F + D+F ++VF E V Y LI + + AA K+ + + AS ++ + + F
Sbjct: 130 FTALDFFVWFVFWEFVLVPMYFLIGIWGGPRRKYAAIKFFVYTNVASLLMFIGFMALVFG 189
Query: 179 TGYLNVEL------------ASEVGLRDDTPLRLAAISLIL----KAGIFPLHVWLPDAH 222
+++ + GL +T +A ++ + K PLH WLPDAH
Sbjct: 190 LDVTTMDMPAIAQAIHAGQFGTTYGLGAETLKTVAFFAMFIGFAVKVPTVPLHTWLPDAH 249
Query: 223 SNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI-------LSMAFGVIMAILQ 275
A T S +L+G+ +K Y L+ + + +A+ LS+ +G ++A+ Q
Sbjct: 250 VQAPTPASVMLAGVLLKMGTYALLRFNFTMMPGIAQQYAVPIAALAVLSVIYGAMLALAQ 309
Query: 276 FNAKRLLAYHTVSQMGYILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIID-ARK 331
+ KR++AY +VS MGY++LGL N Y GAT +AH + G +F+ VG I + A
Sbjct: 310 RDLKRIVAYSSVSSMGYVILGLVAYNYYGVGGATFQMVAHGLISGLMFMCVGVIYNTAHT 369
Query: 332 RKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYAVSFGTAFSFS 391
R G + + + + ++ A +G+ + + I+ FG F+ +
Sbjct: 370 RMVGDLSGIADKMPVTAAVFIAAAFGYMGLPL------MAGFAGELFIFLGGFGADFAHA 423
Query: 392 KL 393
+L
Sbjct: 424 QL 425
>pir||G70008 NADH dehydrogenase (ubiquinone) homolog yufD - Bacillus subtilis
>gi|2635659|emb|CAB15152.1| (Z99120) similar to NADH
dehydrogenase (ubiquinone) [Bacillus subtilis]
Length = 480
Score = 114 bits (283), Expect = 2e-24
Identities = 90/338 (26%), Positives = 166/338 (48%), Gaps = 31/338 (9%)
Query: 64 VGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSL----LLLMHSGL 119
+GG+ GI + D +S ++ ++ LY + V +E S + + +G+
Sbjct: 61 LGGWKAPYGIVLAADQFASLLVLTTAIIGLLVGLYSFRSVGEKRERSFYYSGVQFLLAGV 120
Query: 120 IGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGM 174
GAF++ D FN YVF EL ++SY LI Q RE + KY++ ++ +S + ++ +G
Sbjct: 121 SGAFLTGDLFNMYVFFELLLIASYMLIVLGGTKIQLRE-SLKYIVFNIVSSALFVIGVGF 179
Query: 175 IYFQTGYLNV-ELASEVGLRDDTPLRLAAISLIL------KAGIFPLHVWLPDAHSNAKT 227
+Y TG LN+ +L+ ++ T L + I ++L K GIFPL+ WLP ++
Sbjct: 180 LYAVTGTLNMADLSVKISESGQTGL-ITVIGVLLLLVFGMKGGIFPLYFWLPGSYYAPPA 238
Query: 228 YVSSILSGIAVKAPIYGL---ILLSNLGDLSFLKP----FAILSMAFGVIMAILQFNAKR 280
+S++ + K +Y + L + D +F A L++ FGVI ++ N +
Sbjct: 239 AISALFGALLTKVGLYAITRVFTLIFIHDTAFTHQLMIWLAALTVIFGVIGSLAYSNVMK 298
Query: 281 LLAYHTVSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKY 337
++ Y+ ++ +G IL G++ ++ GA Y + + KG LF+ G +I L
Sbjct: 299 IVIYNIITAVGVILFGVAVHTPASIQGAIYYLIHDMLVKGALFMLAGTLIALTGTASLHK 358
Query: 338 LG---SRNILLIVSIAILSLAISGLGITIGGVAKSYLA 372
+G R +L I +++++G+ G V K +A
Sbjct: 359 MGGLIKRYPVLGWMFFISAISLAGIPPLSGFVGKFKIA 396
>pir||G75060 hydrogenase-4 component B (EC 1.-.-.-) PAB1392 - Pyrococcus abyssi
(strain Orsay) >gi|5458893|emb|CAB50380.1| (AJ248287)
HYDROGENASE-4 COMPONENT B (EC 1.-.-.-) [Pyrococcus
abyssi]
Length = 647
Score = 114 bits (283), Expect = 2e-24
Identities = 106/405 (26%), Positives = 191/405 (46%), Gaps = 52/405 (12%)
Query: 71 IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNW--KELSLLLLMHSGLIGAF---IS 125
+G+ V +D S F++ ++ ++SLY + + KE + ++ L+ F I+
Sbjct: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114
Query: 126 KDYFNFYVFMELSAVSSYALIA--SQDREAAFKYLL-LSMTASYVLILALGMIYFQTGYL 182
+ F F EL +SS+ LI +D + KY + + + ++ L ++LG+ Y G L
Sbjct: 115 SNLVWFVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSL 174
Query: 183 NVELASEV-GLRDDTPLRLAA---ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAV 238
+ + L L L A I+ + K+GI P H W+P + A + +SS+L+G
Sbjct: 175 DAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAME 234
Query: 239 KAPIYGLILL--------SNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQM 290
K ++GLI + ++G L L +++ G + A+ + +AK+LLAYH++ QM
Sbjct: 235 KIAVFGLIRIMYTALPTPKSIGYLVAL--LGAVTLTVGTLYALRESDAKKLLAYHSIGQM 292
Query: 291 GYILLGLSTG----------NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLG- 339
GYI LG+ G ++ ++L H++FKG LFL G++ A +L LG
Sbjct: 293 GYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGG 352
Query: 340 --SRNILLIVSIAILSLAISGLGITIGGVAKSYLATT-EKAIIYAVSFG-------TAFS 389
R ++ + SLAISG+ G ++K + T + +SFG +A +
Sbjct: 353 LAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVT 412
Query: 390 FSKLNYYLWKGYGNEPTNF---------SILPSLTLGVLTVLVGI 425
+ + +G E + ++P L L L +++GI
Sbjct: 413 LASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGI 457
>gi|11466578 NADH dehydrogenase subunit 4 [Rhodomonas salina]
>gi|10444165|gb|AAG17739.1|AF288090_15 (AF288090) NADH
dehydrogenase subunit 4 [Rhodomonas salina]
Length = 483
Score = 114 bits (283), Expect = 2e-24
Identities = 80/307 (26%), Positives = 156/307 (50%), Gaps = 21/307 (6%)
Query: 75 VGLDWVSSTF-LIAEFLVFGASSLYLVKRVTNWKELSL-LLLMHSGLIGAFISKDYFNFY 132
+G+D +S F L+ FL+ + + N KE + LL++ LI F D FY
Sbjct: 78 IGVDGISIFFILLTTFLIPICLLVEWFSKKKNIKEYYVCFLLINIFLIVVFSVLDILIFY 137
Query: 133 VFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELA 187
+F E + + +I ++ +AA+++ L ++ S +++L++ +I+F+ G + ++
Sbjct: 138 IFFESILIPMFLVIGIFGSKTRKIKAAYQFFLYTLLGSVLMLLSIFLIFFEAGSTDFQIL 197
Query: 188 SEVGLRDDTPLRLAA---ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYG 244
V + L L IS +K +FPLH+WLP+AH A T S IL+G+ +K YG
Sbjct: 198 LSVKFSEKKQLLLWLAFFISFAIKIPMFPLHIWLPEAHVEAPTAGSVILAGVLLKMGAYG 257
Query: 245 LILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGL 297
+ S ++ + ++L++ + + + Q + K+++AY +V+ MG + +G+
Sbjct: 258 FVRFSLTFFPIASVFFCPLIFVLSLLAVLYTSLTTLRQVDLKKIIAYSSVAHMGLVTIGI 317
Query: 298 STGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS-RNILLIVSIAILS 353
+ N+Y G+ L ++H LFL VG + + + +KY G I+ + + L
Sbjct: 318 FSFNLYGLEGSFLMMISHGFVSSALFLLVGMLYEKHHSRLIKYYGGIAQIMPLYTFFFLF 377
Query: 354 LAISGLG 360
+++ LG
Sbjct: 378 FSVANLG 384
>sp|Q9ZCG0|NUOM_RICPR NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
M) >gi|7432362|pir||C71640 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain M RP793 - Rickettsia
prowazekii >gi|3861320|emb|CAA15219.1| (AJ235273) NADH
DEHYDROGENASE I CHAIN M (nuoM) [Rickettsia prowazekii]
Length = 491
Score = 114 bits (282), Expect = 3e-24
Identities = 99/347 (28%), Positives = 171/347 (48%), Gaps = 34/347 (9%)
Query: 70 EIGIE--VGLDWVSSTFLIAEF---LVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFI 124
+IG+E VG+D ++ F++ L+ SL+ +K+ + L LLM S IGAF
Sbjct: 75 KIGLEFHVGVDGIAIFFVVLTSFLTLICIIGSLFTIKKYIK-EYLVCFLLMESLCIGAFT 133
Query: 125 SKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILALGMIYFQTG 180
S + FY+F E V Y +I + AA K+ L + S +LAL IY +
Sbjct: 134 SINLLLFYLFFEAILVPMYIIIGVWGGDNRIYAALKFFLYTFFGSVFFLLAL--IYIYSK 191
Query: 181 YLNVELASEVGLRDDTPLRLAAI-------SLILKAGIFPLHVWLPDAHSNAKTYVSSIL 233
+ +L + + L + PL I + +K + P H WLPDAH A T S IL
Sbjct: 192 IHSFDLTNILELIGNIPLFAQKILWWAIFIAFAIKTPMIPFHTWLPDAHVQAPTTGSVIL 251
Query: 234 SGIAVKAPIYGL--ILLSNLGDLS-----FLKPFAILSMAFGVIMAILQFNAKRLLAYHT 286
+GI +K YG +LL + S ++ +++++ + ++A+ Q + K+++AY +
Sbjct: 252 AGILLKLGGYGFLRVLLPLFPNASQEFAIYVIYLSVIAIIYASLVALAQKDIKQMIAYSS 311
Query: 287 VSQMGYILLGL---STGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDL-KYLGSRN 342
++ MGY+ +G+ + + GA L+H + LFL VG + + K++ KY G N
Sbjct: 312 IAHMGYVTIGIFSFTEIGISGAIFQMLSHGIISSSLFLIVGTLYERLHTKEIAKYGGVAN 371
Query: 343 ILLIVSIAILSLAISGLGI-TIGGVAKSYLATTEKAIIYAVSFGTAF 388
+ I++ + +S +G+ + G +L+ IY V+ TAF
Sbjct: 372 KMPILATFFMIAMLSSIGLPSTSGFIGEFLSLLG---IYKVNVVTAF 415
>emb|CAC14149.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 586
Score = 113 bits (281), Expect = 3e-24
Identities = 88/293 (30%), Positives = 141/293 (48%), Gaps = 24/293 (8%)
Query: 127 DYFNFYVFME-LSAVSSYALIASQDREA---AFKYLLLSMTASYVLILALGMIYFQTGYL 182
DY Y+F E ++ S+Y + A R+A AF+YL++ +T VL LG I
Sbjct: 113 DYLTLYLFWEGMAFASAYLVFAQGGRQAIRAAFRYLMVHVTGGVVL---LGGILLHGAAA 169
Query: 183 NVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPI 242
L V L +L A + PL+ WL DA+ A + +S K +
Sbjct: 170 GSLLFGPVEGPLGAGAYLILAGFLLNAAVPPLNAWLTDAYPEATVTGAVFMSAFTTKTAV 229
Query: 243 YGLILLSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGN- 301
Y +L + L + +GVI A+L+ + +RLLAYH VSQ+GY++ G+ G
Sbjct: 230 Y--VLARAFPGIELLVWLGTVMALYGVIYAVLENDCRRLLAYHIVSQVGYMVAGIGIGTE 287
Query: 302 --VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAIL---SLAI 356
V GAT ++ AH ++KG LF+G GA+I R+ L LG + +++A+ + AI
Sbjct: 288 LAVNGATSHAFAHILYKGLLFMGAGAVIYVTGRRKLTELGGLYKAMPLTVALYMIGAFAI 347
Query: 357 SGLGITIGGVAKSYLATT-----EKAIIYAVSFGTAFSF----SKLNYYLWKG 400
S G V+KS + ++ A++ ++ +F KL YY++ G
Sbjct: 348 SAFPFFSGFVSKSMVVAAAGQDHRALVMLALTMASSGTFLHTGLKLPYYMFFG 400
>gi|11466666 NADH dehydrogenase subunit 4 [Malawimonas jakobiformis]
>gi|10178704|gb|AAG13716.1|AF295546_42 (AF295546) NADH
dehydrogenase subunit 4 [Malawimonas jakobiformis]
Length = 486
Score = 113 bits (281), Expect = 3e-24
Identities = 81/308 (26%), Positives = 154/308 (49%), Gaps = 21/308 (6%)
Query: 75 VGLDWVSSTFLIAEFLVFGASSLYLVKRVTNW--KELSLLLLMHSGLIGAFISKDYFNFY 132
+G+D +S FLI + L + ++ + + L LL+ + ++ F D FY
Sbjct: 77 IGIDGISIFFLILTTFLVPICILASWNSIRHYVREYMILFLLLETLMMNVFCVIDIILFY 136
Query: 133 VFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGYLN--VE 185
+F E + + +I +++R+ AAF++ L ++ S ++ A+ +IYF TG + V
Sbjct: 137 IFFESVLIPMFLIIGIWGARERKIHAAFQFFLYTLLGSLFMLFAILIIYFNTGTTDFKVL 196
Query: 186 LASEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYG 244
L +E L LA IS +K + P+H+WLP+AH A T S IL+GI +K YG
Sbjct: 197 LVTEFSRNRQLLLWLAFFISFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYG 256
Query: 245 LILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGL 297
L+ S N+ + + ++++ + + + Q + K+++AY +V+ M +++LGL
Sbjct: 257 LLRFSLTLFPDANIYYIPLVYTMGVIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVILGL 316
Query: 298 STGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL-IVSIAILS 353
+ N + G+ L L+H LFL +G + D + ++Y + + I S L
Sbjct: 317 FSLNIEAIEGSILLMLSHGFVSSALFLCIGVLYDRHHTRIVRYYSGITLTMPIFSTLFLF 376
Query: 354 LAISGLGI 361
++ + +
Sbjct: 377 FTLANISL 384
>pir||S75961 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4.1b -
Synechocystis sp. (strain PCC 6803)
>gi|1001321|dbj|BAA10808.1| (D64006) NADH dehydrogenase
subunit 4 [Synechocystis sp.]
Length = 507
Score = 113 bits (280), Expect = 5e-24
Identities = 84/286 (29%), Positives = 146/286 (50%), Gaps = 29/286 (10%)
Query: 110 SLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTAS 165
+LLLL+ G+ GAF+++D F++F EL + Y LIA + AA K+LL + +
Sbjct: 111 ALLLLLSGGVAGAFLAQDLLLFFLFFELEIIPLYFLIAIWGGQRRGYAAMKFLLYTALSG 170
Query: 166 YVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLI-------LKAGIFPLHVWL 218
++++++ ++ T N + L D P++ + L+ +K IFP H WL
Sbjct: 171 FLVLVSFLGWFWLTKAPNFDY--NPSLADALPVKTQMLLLLPLLLGLGIKIPIFPFHTWL 228
Query: 219 PDAHSNAKTYVSSILSGIAVKAPIYGLI-------LLSNLGDLSFLKPFAILSMAFGVIM 271
PDAH A T VS +L+G+ +K YGL+ L + + +L A +S +G
Sbjct: 229 PDAHVEASTPVSVLLAGVLLKLGTYGLLRFGLGLYLEAWVEFAPYLATLAAISALYGASC 288
Query: 272 AILQFNAKRLLAYHTVSQMGYILLGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIID 328
AI Q + K+++AY +++ MGYILL + +V A+ ++H + LFL VG +
Sbjct: 289 AIAQKDMKKVVAYSSIAHMGYILLAAAAATRLSVTAASAQMVSHGIISALLFLLVGVVYK 348
Query: 329 ARKRKDLKYL-----GSRNILLIVSIAILS-LAISGLGITIGGVAK 368
+D+ L R + + S+ IL +A +G+ +G +A+
Sbjct: 349 KTGSRDVDKLQGLLTPERGLPITGSLMILGVMASAGIPGMVGFIAE 394
>gi|11466299 NADH dehydrogenase subunit 4 [Cafeteria roenbergensis]
>gi|6180081|gb|AAF05778.1|AF193903_1 (AF193903) NADH
dehydrogenase subunit 4 [Cafeteria roenbergensis]
Length = 453
Score = 112 bits (278), Expect = 8e-24
Identities = 88/305 (28%), Positives = 142/305 (45%), Gaps = 22/305 (7%)
Query: 73 IEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTN-WKELSLLLLMHSGLIGAFISKDYFNF 131
+ +G+D +S F+I L+ S LY + L LLL+ G+ GAF+ D F
Sbjct: 44 LPIGVDSLSIWFVILNHLIIYLSLLYTFSTQNKQYGFLYCLLLLQWGIGGAFMVFDLLGF 103
Query: 132 YVFMELSAVSSYALI---ASQDREAAFKYLLLSMTASYVLILALGMIY----FQTGYLNV 184
++F EL+ + Y LI S++R+ YL+ T + + + Y F T V
Sbjct: 104 FIFFELTLIPIYLLILIYGSRERKIRASYLISLYTLFGSIFMFFNIFYCFAKFGTTNFFV 163
Query: 185 ELASEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIY 243
+ + D L + I+ K + P H+WLP+AH A T S IL+ + +K Y
Sbjct: 164 LMTLDFAPEDAKFLWITFFIAFAAKIPMIPFHIWLPEAHVEAPTIGSVILAALLLKLGTY 223
Query: 244 GLILL-------SNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLG 296
G++ + L + FA++S+ F + AI Q + K+++AY ++ M +LLG
Sbjct: 224 GILRFLLHLFPEATLYFSPLINVFALISIVFTSMTAIRQIDLKKIIAYSSIGHMNVVLLG 283
Query: 297 L---STGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNI---LLIVSIA 350
+ S ++ G L+H + G LF VGA K + L+Y G I LL
Sbjct: 284 MLVPSVESLEGTIFQMLSHGIIAGALFFIVGAFYQRYKVRSLEYFGGFMITAPLLATFFL 343
Query: 351 ILSLA 355
I S+A
Sbjct: 344 IFSMA 348
>pir||A48643 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - Escherichia
coli >gi|304921|gb|AAA53583.1| (L19568) NADH ubiquinone
oxidoreductase subunit [Escherichia coli]
>gi|416008|emb|CAA48372.1| (X68301) NADH dehydrogenase
I, subunit nuoM [Escherichia coli]
Length = 509
Score = 111 bits (276), Expect = 1e-23
Identities = 119/435 (27%), Positives = 192/435 (43%), Gaps = 69/435 (15%)
Query: 15 LLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGI- 73
+LI G F T R ++P AL +G+ L + L +GG + GI
Sbjct: 7 ILIPFIGGFLCWQTERFGVKVPRWI---ALITMGLTLALSLQLWLQGGY--SLTQSAGIP 61
Query: 74 ----EVGLDWVSSTFLIAEFLVFGASSLYLVKR--------VTNWKELSL--------LL 113
E + W+ + + G S L +V + +WKE+ L+
Sbjct: 62 QWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLM 121
Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREA---------AFKYLLLSMTA 164
+ G+IG F++ D F F+ F E+ V Y LIA +A A K+ + + +
Sbjct: 122 WILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQAS 181
Query: 165 SYVLILALGMIYF----QTGY--------LNVELASEVGLRDDTPLRLAA-ISLILKAGI 211
V+++A+ + F TG LN ++S V + L L I+ +K +
Sbjct: 182 GLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGV----EYLLMLGFFIAFAVKMPV 237
Query: 212 FPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFGVI- 270
PLH WLPDAHS A T S L+GI +K YGL+ S + FA ++M GVI
Sbjct: 238 VPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIG 297
Query: 271 ------MAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFL 321
MA Q + KRL+AY +VS MG++L+ + TG+ GA + +AH + GLF+
Sbjct: 298 IFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFI 357
Query: 322 GVGAIIDARKRKDLKYLGSR------NILLIVSIAILSLAISGLGITIGGVAKSYLATTE 375
G + + +D++ +G L + A+ +L + G G +G + +
Sbjct: 358 LCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQV 417
Query: 376 KAIIYAVS-FGTAFS 389
+I +S FG F+
Sbjct: 418 VPVITVISTFGLVFA 432
>pir||T51314 probable CO-induced hydrogenase complex chain CooM [imported] -
Rhodospirillum rubrum >gi|1515466|gb|AAC45116.1|
(U65510) CooM [Rhodospirillum rubrum]
Length = 1265
Score = 111 bits (276), Expect = 1e-23
Identities = 91/292 (31%), Positives = 136/292 (46%), Gaps = 33/292 (11%)
Query: 112 LLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDR----EAAFKYLLLSMTASYV 167
L LM LIG + NFY+F EL SY L+ + +A KY L+ + +YV
Sbjct: 314 LFLMIGSLIGVATTNHLGNFYLFWELMTWMSYLLVIHEQTAKALKAGMKYFLICASGAYV 373
Query: 168 LILALGMIYFQTGYLNV-ELASEVGLRDDT----PLRLAAISLILKAGIFPLHVWLPDAH 222
+ + +++ Q G + E+A +G L I + KAG+FPL+ WLP+AH
Sbjct: 374 MHFGILVLHAQLGTFEISEIAPCIGTLSPALAGVVLATFLIGFMAKAGLFPLYSWLPEAH 433
Query: 223 SNAKTYVSSILSGIAVKAPIYGLI-LLSNLGDLSFLKPFAI----------------LSM 265
A + +S +SGI KA I G++ LL + + L F + +++
Sbjct: 434 PVAPSSISGPMSGILTKAGILGMVKLLFGIFGVGALGQFGLFAGLSLPGAVLVALGGITL 493
Query: 266 AFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLG 322
G + A Q + KRLLAY T++Q+G I + L G + G + HA+ K LF
Sbjct: 494 LLGEVQAYRQTDIKRLLAYSTLAQIGEITMVLGVGTSLALAGGLFHVTNHAVMKTMLFFA 553
Query: 323 VGAII---DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL 371
VGA+I R DLK LG + + I LAI G+ GG +L
Sbjct: 554 VGALILRSAGRSLDDLKGLGKVMPFTGLCLGIGLLAIMGVP-PFGGFVSKFL 604
Score = 95.6 bits (234), Expect = 1e-18
Identities = 82/305 (26%), Positives = 141/305 (45%), Gaps = 40/305 (13%)
Query: 113 LLMHSGLIGAFISKDYFNFYVFME-LSAVSSYALIASQDREAAF----KYLLLSMTASYV 167
++M GL+G S D FNF+ F E +S+ + Y +I ++ + + KY + + +
Sbjct: 793 VMMIGGLLGVTASDDLFNFFAFWEVMSSWTLYLVIIHEETKDSLDEGTKYFIFNFVGASF 852
Query: 168 LILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAIS-------LILKAGIFPLHVWLPD 220
L L + ++ + G + L + L P+ A+S L++KA PL +
Sbjct: 853 LFLGVAILAAKAGTFEMALLPQAAL--SMPVGWLAVSAGLILAGLLMKAAQLPLRIDYQM 910
Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILL-------------SNLG-----DLSFLKPFAI 262
+ A T VS +S + +K YG++ + + LG L ++ A
Sbjct: 911 HPAPAPTPVSGYISAVLLKVGPYGVLKIMVALGAGGGLARIAGLGAWMPDPLVVVQVIAA 970
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGL 319
L++ + MA++Q KRLL Y TVSQ+GY+LLGLS G+ V G ++ + H M K L
Sbjct: 971 LTVLYAGAMAVVQNGVKRLLIYSTVSQLGYVLLGLSLGSALGVAGGLMHFVNHMMLKDIL 1030
Query: 320 FLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAII 379
FL G I+ L LG + ++ + A G+++ G+ + K +I
Sbjct: 1031 FLAAGCILAQAHVHSLDDLGGLGRKMPITFGLFLFA----GLSLSGI-PPFNGFASKWLI 1085
Query: 380 YAVSF 384
Y +F
Sbjct: 1086 YQGAF 1090
>sp|P31978|NUOM_ECOLI NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
13) (NUO13) >gi|7432335|pir||C64999 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 4 - Escherichia coli
>gi|1788613|gb|AAC75337.1| (AE000317) NADH dehydrogenase
I chain M [Escherichia coli K12]
>gi|1799637|dbj|BAA16105.1| (D90859) NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 4 [Escherichia coli]
Length = 509
Score = 111 bits (276), Expect = 1e-23
Identities = 119/435 (27%), Positives = 192/435 (43%), Gaps = 69/435 (15%)
Query: 15 LLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGI- 73
+LI G F T R ++P AL +G+ L + L +GG + GI
Sbjct: 7 ILIPFIGGFLCWQTERFGVKVPRWI---ALITMGLTLALSLQLWLQGGY--SLTQSAGIP 61
Query: 74 ----EVGLDWVSSTFLIAEFLVFGASSLYLVKR--------VTNWKELSL--------LL 113
E + W+ + + G S L +V + +WKE+ L+
Sbjct: 62 QWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLM 121
Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREA---------AFKYLLLSMTA 164
+ G+IG F++ D F F+ F E+ V Y LIA +A A K+ + + +
Sbjct: 122 WILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQAS 181
Query: 165 SYVLILALGMIYF----QTGY--------LNVELASEVGLRDDTPLRLAA-ISLILKAGI 211
V+++A+ + F TG LN ++S V + L L I+ +K +
Sbjct: 182 GLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGV----EYLLMLGFFIAFAVKMPV 237
Query: 212 FPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFGVI- 270
PLH WLPDAHS A T S L+GI +K YGL+ S + FA ++M GVI
Sbjct: 238 VPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIG 297
Query: 271 ------MAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFL 321
MA Q + KRL+AY +VS MG++L+ + TG+ GA + +AH + GLF+
Sbjct: 298 IFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFI 357
Query: 322 GVGAIIDARKRKDLKYLGSR------NILLIVSIAILSLAISGLGITIGGVAKSYLATTE 375
G + + +D++ +G L + A+ +L + G G +G + +
Sbjct: 358 LCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQV 417
Query: 376 KAIIYAVS-FGTAFS 389
+I +S FG F+
Sbjct: 418 VPVITVISTFGLVFA 432
>pir||H64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO13 -
Helicobacter pylori (strain 26695)
>gi|2314437|gb|AAD08316.1| (AE000631) NADH-ubiquinone
oxidoreductase, NQO13 subunit (NQO13) [Helicobacter
pylori 26695]
Length = 512
Score = 111 bits (275), Expect = 2e-23
Identities = 112/401 (27%), Positives = 183/401 (44%), Gaps = 45/401 (11%)
Query: 67 YPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSG-LIGAFIS 125
Y + VG+D ++ L+ +V S +Y+ +R K+ ++ LL+ G L+G F S
Sbjct: 70 YQIGVNYHVGVDGIALFLLLLNAIVVLLSVIYVKERR---KDFAICLLLLEGILMGVFSS 126
Query: 126 KDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILALGMIYFQTGY 181
+ FY F E+S + LI R + K+ L + AS L + LG++Y Y
Sbjct: 127 LNMIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLAS--LCMLLGILYIGYDY 184
Query: 182 LNVELASEVGLRDDTPLRLAA-----------ISLILKAGIFPLHVWLPDAHSNAKTYVS 230
N + D L ++ I + +K +FPLH WLP A+SNA T S
Sbjct: 185 ANNYGMMSFDILDWYQLNFSSGVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSNAPTLGS 244
Query: 231 SILSGIAVKAPIYGLI--LLSNLGDLS--FLKPFAILSMA---FGVIMAILQFNAKRLLA 283
+LS + K Y L+ LL DLS +L P AI ++ +G +A Q + K L+A
Sbjct: 245 VMLSALLSKMGTYALLRFLLPLFPDLSEIYLTPIAIAALCMIIYGGFLAYAQKDLKTLIA 304
Query: 284 YHTVSQMGYILLGLSTGNV---YGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS 340
Y + S MG ++LG+ + NV GA AH + GLFL G + + ++ GS
Sbjct: 305 YSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGIIVMGLFLLAGILEERASSLEIARFGS 364
Query: 341 ---RNILLIVSIAILSLAISGLGITIGGVAK--SYLATTEKAIIYAVSFGTAF------- 388
+ I+ +A G+ ++IG V + S L + A+ GT+
Sbjct: 365 IAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSIILSAIYM 424
Query: 389 --SFSKLNYYLWKGYGNEPTNFSILPSLTLGVLTVLVGIEL 427
S+ + + K N+ + F L + +GVL+V++ + L
Sbjct: 425 LTSYKDVFFGNLKAGSNQISVFEDLNAREVGVLSVILALIL 465
>gi|11497457 NADH dehydrogenase (ubiquinone), subunit 4 [Prototheca wickerhamii]
>gi|3122533|sp|Q37617|NU4M_PROWI NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4 >gi|7432347|pir||T11916 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Prototheca wickerhamii mitochondrion
>gi|467848|gb|AAD12635.1| (U02970) NADH dehydrogenase
(ubiquinone), subunit 4 [Prototheca wickerhamii]
Length = 523
Score = 111 bits (275), Expect = 2e-23
Identities = 79/287 (27%), Positives = 148/287 (51%), Gaps = 20/287 (6%)
Query: 71 IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNW-KELSL-LLLMHSGLIGAFISKDY 128
+ +G+D +S F+I L+ L + + KE + L++ + ++ F D
Sbjct: 111 LNFALGVDGISLFFIILTTLLVPICILVSWNNIEVYVKEYCIAFLVLETLMLTVFSVLDL 170
Query: 129 FNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGYLN 183
FY+F E + + +I S++R+ AA+++ L ++ S +++LA+ +IYFQTG L+
Sbjct: 171 LLFYIFFESVLIPMFIIIGVWGSRERKIRAAYQFFLYTLFGSVLMLLAILLIYFQTGTLD 230
Query: 184 VELA--SEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
+E+ S+ L LA S +K + P+H+WLP+AH A T S IL+GI +K
Sbjct: 231 IEMLYLSDFSETRQCILWLAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKL 290
Query: 241 PIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI 293
YG + S + + +++++ + I Q + K+++AY +V+ M ++
Sbjct: 291 GTYGFLRFSIPLFPYACIYFTPLIYTMSVIAIVYTSCTTIRQIDLKKIIAYSSVAHMNFV 350
Query: 294 LLGL---STGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKY 337
+GL +T + G+ L ++H + LFL VG + D K + L+Y
Sbjct: 351 TIGLFSQNTQGIEGSILLMISHGLVSPALFLCVGVLYDRHKTRLLRY 397
>pir||S75340 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Synechocystis sp. (strain PCC 6803)
>gi|1652331|dbj|BAA17254.1| (D90904) NADH dehydrogenase
subunit 5 [Synechocystis sp.]
Length = 495
Score = 111 bits (274), Expect = 2e-23
Identities = 93/311 (29%), Positives = 156/311 (49%), Gaps = 20/311 (6%)
Query: 72 GIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNF 131
GI + LD + S FL+ LV A LY L+++H L AF+S D +
Sbjct: 71 GILLQLDNLGSYFLLTNGLVTLAVLLYCWASPRTTFFYVQLMVLHVSLNAAFLSTDLISL 130
Query: 132 YVFMELSAVSSYALIASQDREAA----FKYLLLSMTASYVLILALGMIYFQTGYLNVELA 187
YV +E+ +SS+ LI + A+ +YL ++ TA ++ + ++Y T L+ +
Sbjct: 131 YVCLEVVGLSSFLLIIYPRQAASSWIGLRYLFVTNTALLFYLIGVMLVYQATNSLDFQGL 190
Query: 188 SEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLIL 247
+ + L + L++K IF +W P S A V+++LSGI VKA I L+
Sbjct: 191 ATAPYE---AIALIFLGLLIKGEIFLSGLWSPQTSSIASAPVAALLSGIVVKAGILPLLR 247
Query: 248 LSNLGDLSFLKPF--AILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGA 305
++L + + + AI + G+ + + +++R+LAY T+SQMG+IL+ + G
Sbjct: 248 FASLSERLAMMVWGLAIATALLGMGLGMFARDSRRILAYSTISQMGFILVAPAVGG---- 303
Query: 306 TLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNI--LLIVSIAILSLAISGLGITI 363
LY+L H + K LFL VG++ +DL L ++ I L + + + S +I GL I
Sbjct: 304 -LYALTHGLAKACLFLLVGSL----PERDLDKLQAQPISYKLWLPMVLASSSIIGLPILA 358
Query: 364 GGVAKSYLATT 374
G AK+ T
Sbjct: 359 GFEAKTLTLET 369
>pir||S38322 NADH dehydrogenase I chain nuoM - Escherichia coli (strain AN387)
Length = 458
Score = 110 bits (273), Expect = 3e-23
Identities = 106/386 (27%), Positives = 175/386 (44%), Gaps = 50/386 (12%)
Query: 49 VFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVS------STFLIAEFLVFGASSLYLVKR 102
+ LP L+ GG + G++V W++ + L + + G SL
Sbjct: 1 MLLPWLILIPFIGGFLCWQTERFGVKVPR-WIALITMGLTLALSLQLWLQGGYSLTQSAG 59
Query: 103 VTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREA--------- 153
+ W+ + + G+IG F++ D F F+ F E+ V Y LIA +A
Sbjct: 60 IPQWQSEFDMPWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITA 119
Query: 154 AFKYLLLSMTASYVLILALGMIYF----QTGY--------LNVELASEVGLRDDTPLRLA 201
A K+ + + + V+++A+ + F TG LN ++S V + L L
Sbjct: 120 ATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGV----EYLLMLG 175
Query: 202 A-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF 260
I+ +K + PLH WLPDAHS A T S L+GI +K YGL+ S + F
Sbjct: 176 FFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEF 235
Query: 261 AILSMAFGVI-------MAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSL 310
A ++M GVI MA Q + KRL+AY +VS MG++L+ + TG+ GA + +
Sbjct: 236 APIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMI 295
Query: 311 AHAMFKGGLFLGVGAIIDARKRKDLKYLGSR------NILLIVSIAILSLAISGLGITIG 364
AH + GLF+ G + + +D++ +G L + A+ +L + G G +G
Sbjct: 296 AHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVG 355
Query: 365 GVAKSYLATTEKAIIYAVS-FGTAFS 389
+ + +I +S FG F+
Sbjct: 356 EFMILFGSFQVVPVITVISTFGLVFA 381
>pir||E83514 probable NADH dehydrogenase PA1056 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946970|gb|AAG04445.1|AE004537_10 (AE004537)
probable NADH dehydrogenase [Pseudomonas aeruginosa]
Length = 499
Score = 110 bits (272), Expect = 4e-23
Identities = 87/299 (29%), Positives = 156/299 (52%), Gaps = 31/299 (10%)
Query: 64 VGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKEL--SLLLLMHSGLIG 121
+G + GI + LD +++ L+A ++ A+ +Y ++ + +L G+ G
Sbjct: 60 LGNWAAPFGIVLMLDRLAALMLLATAVLGSAALIYALRGEDRLGKHFHALFQFQLLGING 119
Query: 122 AFISKDYFNFYVFMELSAVSSYALI----ASQDREAAFKYLLLSMTASYVLILALGMIYF 177
AF++ D FN +VF E+ ++SYAL+ ++ + Y++L++ S ++A+G +Y
Sbjct: 120 AFLTGDLFNLFVFFEILLIASYALLLHGGGAERVRSGLHYVILNLVGSAFFLIAVGTLYG 179
Query: 178 QTGYLNV-ELASEVGLRD--DTPLRLAA-----ISLILKAGIFPLHVWLPDAHSNAKTYV 229
TG LN+ ++A ++ + D PL AA + LKA + PL+ WLP A++ A V
Sbjct: 180 LTGTLNMADMAQKIAMADAERAPLLAAAGLLLLVVFALKAALLPLYFWLPRAYATASAPV 239
Query: 230 SSILSGIAVKAPIYGLILLSNL------GDL-----SFLKPFAILSMAFGVIMAILQFNA 278
+++ + I K IY ++ + L G+L ++L P A+ ++ G I A+
Sbjct: 240 AALFA-IMTKVGIYSILRVYTLVFGDAAGELANLAQAWLWPLALATLGLGAIGALAARTL 298
Query: 279 KRLLAYHTVSQMGYILLGLSTGN--VYGATLYSLAHAMF-KGGLFLGVGAIIDARKRKD 334
+ LLAY V G +L G++ G+ A+LY L H+ + GGLFL + AR+R D
Sbjct: 299 QGLLAYLVVVSAGTLLAGVALGSERALAASLYYLLHSTWIAGGLFLLADLV--ARQRGD 355
>pir||F71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO13 -
Helicobacter pylori (strain J99)
>gi|4155783|gb|AAD06759.1| (AE001545) NADH
oxidoreductase I [Helicobacter pylori J99]
Length = 512
Score = 110 bits (272), Expect = 4e-23
Identities = 113/400 (28%), Positives = 182/400 (45%), Gaps = 43/400 (10%)
Query: 67 YPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISK 126
Y + VG+D ++ L+ +V S +Y+ +R ++ + LLL+ L+G F S
Sbjct: 70 YQIGVNYHVGVDGIALFLLLLNAIVVLLSVIYVKERRKDF--VICLLLLEGILMGVFSSL 127
Query: 127 DYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILALGMIYFQTGYL 182
+ FY F E+S + LI R + K+ L + AS L + LG++Y Y
Sbjct: 128 NVIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLAS--LCMLLGILYIGYDYA 185
Query: 183 NVELASEVGLRDDTPLRLAA-----------ISLILKAGIFPLHVWLPDAHSNAKTYVSS 231
N + D L ++ I + +K +FPLH WLP A+SNA T S
Sbjct: 186 NNYGMMSFDILDWYQLNFSSGIKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSNAPTLGSV 245
Query: 232 ILSGIAVKAPIYGLI--LLSNLGDLS--FLKPFAILSMA---FGVIMAILQFNAKRLLAY 284
+LS + K Y L+ LL +LS +L P AI+++ +G +A Q + K L+AY
Sbjct: 246 MLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKDLKTLIAY 305
Query: 285 HTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS- 340
+ S MG ++LG+ + N V GA AH + GLFL G + + ++ GS
Sbjct: 306 SSFSHMGVVVLGVFSFNVEGVSGAVFMMFAHGVIVMGLFLLAGILEERASSLEIARFGSI 365
Query: 341 --RNILLIVSIAILSLAISGLGITIGGVAK--SYLATTEKAIIYAVSFGTAFSFS---KL 393
+ I+ +A G+ ++IG V + S L + A+ GT+ S L
Sbjct: 366 AKSAPVFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSIILSAVYML 425
Query: 394 NYYLWKGYGNEPTN------FSILPSLTLGVLTVLVGIEL 427
Y +GN T F L + +GVL+V++ + L
Sbjct: 426 TSYKDVFFGNLKTGNNQISVFEDLNAREVGVLSVILALIL 465
>gi|11466471 NADH dehydrogenase subunit 4 [Chrysodidymus synuroideus]
>gi|7110468|gb|AAF36940.1|AF222718_14 (AF222718) NADH
dehydrogenase subunit 4 [Chrysodidymus synuroideus]
Length = 482
Score = 110 bits (272), Expect = 4e-23
Identities = 83/303 (27%), Positives = 143/303 (46%), Gaps = 19/303 (6%)
Query: 76 GLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFM 135
GLD +S F + L+ L+ + L+L+ L+ F D FY+F
Sbjct: 77 GLDSISIYFFVLTSLLSFLCVLFSWTNTNSKDFFFNLILLELLLLLVFSVLDLILFYIFF 136
Query: 136 ELSAVSSYALIA---SQDREAAFKYLLLSMTASYVLILALGMIYFQ----TGYLNVELAS 188
E + + +I S+ R+ YLL T +++ +G+IY T + +
Sbjct: 137 EAILIPMFLIIGMLGSRSRKIRAAYLLFFYTLIGSILMLVGIIYIYFIVGTSSFEIIFSY 196
Query: 189 EVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLIL 247
L++ L LA IS K +FP H+WLP+AH A T S +L+GI +K +YG +
Sbjct: 197 NFSLQEQQWLWLAFFISFASKIPMFPFHIWLPEAHVEAPTVGSVLLAGILLKLGVYGFLR 256
Query: 248 LS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG 300
S +L F+ I+ + + AI Q + KR++AY +++ M ++LG+ +
Sbjct: 257 FSLTLFSEASLYYSPFVYVLCIIGILYSSFTAIRQTDIKRIIAYSSIAHMNLVVLGIFSF 316
Query: 301 NVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSR-NILLIVSIAILSLAI 356
N+ G+ L SL+H GG+FL VG + D + L Y G +++ + S L+ +
Sbjct: 317 NIIGLEGSILQSLSHGFVSGGMFLLVGILYDRYHSRLLYYYGGLVHVMPLYSFFFLAFTL 376
Query: 357 SGL 359
+ +
Sbjct: 377 ANI 379
>pir||S16447 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - wheat
mitochondrion
Length = 495
Score = 109 bits (271), Expect = 5e-23
Identities = 95/356 (26%), Positives = 168/356 (46%), Gaps = 43/356 (12%)
Query: 71 IGIEVGLDWVS------STFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFI 124
I + +G+D +S +TFLI ++ G S + R + + L+ +I F
Sbjct: 80 IHLYMGIDGLSLFFVILTTFLIPICILVGWSGM----RSFGKEYIIAFLICEFLMIAVFC 135
Query: 125 SKDYFNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQT 179
D FYVF E + + +I S+ R+ AA+++ L ++ S ++LA+ +I QT
Sbjct: 136 MLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQT 195
Query: 180 GY--LNVELASEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGI 236
G L + L +E R L +A S +K + P+H+WLP+AH A T S IL+GI
Sbjct: 196 GTTDLQILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGI 255
Query: 237 AVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQ 289
+K YG + S L F+ + +++ + + + Q + K+++AY +V+
Sbjct: 256 LLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAH 315
Query: 290 MGYILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS------ 340
M + +G+ + N+ G+ L L+H + LFL VG + D K + ++Y G
Sbjct: 316 MNLVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMP 375
Query: 341 --RNILLIVSIAILSLA-----ISGLGITIGGVAKSYLATTEKAIIYAVSFGTAFS 389
I ++A +SL I I +G ++ L T +A+ + G A+S
Sbjct: 376 NFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLRAL--GMILGAAYS 429
>pir||T12297 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 [similarity] -
Pseudomonas syringae (fragment)
>gi|2920663|gb|AAC04581.1| (AF048756) NADH dehydrogenase
I chain M [Pseudomonas syringae]
Length = 444
Score = 109 bits (269), Expect = 9e-23
Identities = 92/332 (27%), Positives = 165/332 (48%), Gaps = 39/332 (11%)
Query: 71 IGIEVGLDWVSSTFLIAEFLVFGASSLYL---VKRVTNWKELSLLLLMHSGLIGAFISKD 127
I + + LD +S ++ L+ S L ++R + L+L+ ++ G++G F++ D
Sbjct: 12 IDVHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRKVGFFHLNLMWIL-GGVVGVFLAID 70
Query: 128 YFNFYVFMELSAVSSYALIA-----SQDRE-----AAFKYLLLSMTASYVLILA-LGMI- 175
F F+ F E+ V Y LIA S D + AA K+ + + + ++++A LG++
Sbjct: 71 LFMFFFFWEMMLVPMYFLIALWGHSSSDGKKTRIYAATKFFIFTQASGLIMLVAILGLVL 130
Query: 176 --YFQTGYLNVELAS--EVGLRDDTPLRLAA---ISLILKAGIFPLHVWLPDAHSNAKTY 228
+ QTG + A + L T L I+ +K + PLH WLPDAH+ A T
Sbjct: 131 VHFNQTGVITFAYADLLKTKLAPGTEYILMLGFFIAFAVKLPVVPLHSWLPDAHAQAPTA 190
Query: 229 VSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFGVI-------MAILQFNAKRL 281
S L+GI +K YGL+ + + FA ++M G++ +A Q + KRL
Sbjct: 191 GSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTLGLVGIFYGAFLAFAQTDIKRL 250
Query: 282 LAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYL 338
+A+ +VS MG++L+G+ +G+ + G + +AH + LF+ G + + +D++ +
Sbjct: 251 IAFSSVSHMGFVLIGIYSGSQQALQGVLIQMIAHGLSAAALFILSGQLYERLHTRDMREM 310
Query: 339 GS--RNILLIVSIAIL----SLAISGLGITIG 364
G I I +I++ SL + G G +G
Sbjct: 311 GGLWSRIAYIPAISLFFAAASLGLPGTGNFVG 342
>pir||G71683 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain N2 RP284 -
Rickettsia prowazekii >gi|3860845|emb|CAA14745.1|
(AJ235271) NADH DEHYDROGENASE I CHAIN N (nuoN2)
[Rickettsia prowazekii]
Length = 432
Score = 109 bits (269), Expect = 9e-23
Identities = 90/329 (27%), Positives = 165/329 (49%), Gaps = 41/329 (12%)
Query: 64 VGGYPREIGIEVGLDWVSST------FLIAEFLVF--GASSLYLVKRVTNWKE---LSLL 112
+GG+ IGIE L+ ++ ++ FLVF ++ +++ + N ++ +L
Sbjct: 63 IGGWTSNIGIEYRLNSLNQATTIYLNLVLLFFLVFCHKMTNRTILQYINNNRKSLFYGIL 122
Query: 113 LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVL 168
L H+G +G + D+FN YVF+E+SA+SSY LIAS + AF YL++ + +
Sbjct: 123 LFAHTGYLGMISTNDFFNLYVFIEISALSSYVLIASGNNPKSLVGAFDYLIMGSIGATFI 182
Query: 169 ILALGMIYFQTGYLNV-ELASEVGLRDDTPLRLAAISL-------ILKAGIFPLHVWLPD 220
++A+G++ TG LN+ ++A+ L++ T LR+ I + ILK FP+H W+
Sbjct: 183 LIAIGLLLSITGSLNMHDIAAY--LKEYTKLRIITIVIGFFLIGSILKTAFFPMHFWMMR 240
Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNL---------GDLSFLKPFAILSMAFGVIM 271
A++N + + L+GI+ IY + + + +F++P A+ S+
Sbjct: 241 AYNNTASIILVYLAGISTIIGIYIIYKFTYIIIGYETIKTAITNFIRPIALASLIIAPYF 300
Query: 272 AILQFNAKRLLAYHTVSQMGYI-LLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDAR 330
A + K ++ Y +Q+GY+ LL ++ + L ++ K LFL + + ++
Sbjct: 301 AYQAKDFKNIIIYSCFTQIGYVFLLYITENGIIMLPSLLLIDSINKISLFL-IASYNESY 359
Query: 331 KRKDLKYLGSRNILLIVSIAILSLAISGL 359
KR+ K L +I+ I L IS L
Sbjct: 360 KREPNKIL-----TIIIIICSCGLPISPL 383
>gb|AAF65741.1|AF228525_11 (AF228525) F420H2 dehydrogenase subunit FpoN [Methanosarcina mazei]
Length = 493
Score = 109 bits (269), Expect = 9e-23
Identities = 88/365 (24%), Positives = 166/365 (45%), Gaps = 35/365 (9%)
Query: 67 YPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISK 126
+ + I+ + FL +V AS Y + +L+L G++ +
Sbjct: 69 FSETLSIDALSQFFKLVFLAVALIVSIASIKYTENSDHTEEFYTLVLFATFGMMIVASAN 128
Query: 127 DYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMTASYVLILALGMIYFQTGY 181
D + EL++++++AL + + E A KY ++ ++ +++ L +Y TG
Sbjct: 129 DLILLFCAFELASLATFALAGFEKQNARSLEGAMKYFVIGSVSAALMLFGLSFVYGATGT 188
Query: 182 LNVEL-ASEVGLRDDTPLRLAAISLI-----LKAGIFPLHVWLPDAHSNAKTYVSSILS- 234
++ L A GL P+ + AI L+ K + P H+W PD + + + VS++L+
Sbjct: 189 TSIPLIAQNPGLLTGNPIGIVAIVLLTAGFGFKMALVPFHMWAPDTYQGSPSVVSALLAA 248
Query: 235 -----GIAVKAPIYGLILLSNLGDLSFLKPF-AILSMAFGVIMAILQFNAKRLLAYHTVS 288
G ++ + L + D F+ A+++M FG ++A+ Q + KR+LAY +++
Sbjct: 249 GSKKMGFVAAFRVFIIALAALQPDWQFMFTLLAVVTMTFGNVVAVAQTSVKRMLAYSSLA 308
Query: 289 QMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAI---IDARKRKDL------- 335
Q GYI + + + G +Y+LAHA K G F+ A+ I + K +L
Sbjct: 309 QAGYIAMAFAVMTPVALAGGIMYTLAHAFMKAGAFIAAAAVVWMITSEKTGNLDIPDHLD 368
Query: 336 --KYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATTEKAIIYAVSFGTAFSFS 391
+ LG R L + + + A++G+ T G +AK L +T + + + S
Sbjct: 369 SFRGLGKRMPLAALCMTVFVFALAGIPPTAGFMAKFVLFSSTIQAGMTWLAVIAILNSAL 428
Query: 392 KLNYY 396
L YY
Sbjct: 429 SLFYY 433
>gi|11465868 NADH dehydrogenase subunit 4 [Ochromonas danica]
>gi|10505201|gb|AAG18383.1|AF287134_8 (AF287134) NADH
dehydrogenase subunit 4 [Ochromonas danica]
Length = 483
Score = 109 bits (269), Expect = 9e-23
Identities = 82/310 (26%), Positives = 148/310 (47%), Gaps = 19/310 (6%)
Query: 71 IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFN 130
+ GLD +S F L+ LY++ + L LL+ + L+ F D
Sbjct: 72 LSFSFGLDGISIFFFFLTSLLIFLCVLYVLNENNLKQYLVLLISIELILLIIFSVLDLML 131
Query: 131 FYVFMELSAVSSYALIA---SQDREAAFKYLLLSMTASYVLILALGMIYFQT--GYLNVE 185
FY+F E + + +I S++R+ YL T L+L +G++Y + G N+E
Sbjct: 132 FYIFFEAILIPMFIIIGVYGSRERKVRAVYLFFFYTLCGSLLLLVGVLYIYSKIGSFNLE 191
Query: 186 --LASEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPI 242
+ + ++ L A +S K +FP H+WLP+AH A T S +L+G+ +K +
Sbjct: 192 YLMCYQFTKTEELLLWFAFFLSFASKIPMFPFHIWLPEAHVEAPTIGSVLLAGVLLKLGV 251
Query: 243 YGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILL 295
YG I S +L F+ +++S+ + + A+ Q + KR++AY +++ M + L
Sbjct: 252 YGFIRFSLTLFPYASLFYSPFIYFLSLISIIYASLTALRQTDLKRIIAYSSIAHMNLVTL 311
Query: 296 GLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS-RNILLIVSIAI 351
G+ N + G+ + SL+H GG+F +G + + L Y G + + + SI
Sbjct: 312 GIFAFNNIGLEGSIIQSLSHGFVAGGMFFLIGILYSRYHSRFLYYYGGLAHTMPVYSIFF 371
Query: 352 LSLAISGLGI 361
L L I+ + +
Sbjct: 372 LLLTIANIAL 381
>dbj|BAA35098.1| (AB015981) MnhD [Staphylococcus aureus]
Length = 498
Score = 108 bits (268), Expect = 1e-22
Identities = 107/457 (23%), Positives = 206/457 (44%), Gaps = 47/457 (10%)
Query: 4 VIMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGV 63
V+ ++ PVI ++L+ G I + A LT + L V + G +
Sbjct: 8 VLTLVIPVITAILLVFIGKRPIIKRYVALGGTLLTLVAAIINLANV--------VKHGPI 59
Query: 64 ---VGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSL----LLLMH 116
+G + I LD S+ +I ++ LY + + +E +L M
Sbjct: 60 RVELGSWKAPYSIVFVLDIFSALLIITSIIITAIVILYSYQTIGIERERYYYYFSVLFML 119
Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYALI----ASQDREAAFKYLLLSMTASYVLILAL 172
G+IGAF + D FN +VF E+ +SSY L+ + KY+L+++ +S ++ +
Sbjct: 120 IGIIGAFTTGDIFNLFVFFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSFFVMGV 179
Query: 173 GMIYFQTGYLNV-ELASEVGLRDDTPLRLAAISLIL-------KAGIFPLHVWLPDAHSN 224
++Y G LN+ ++++++ L I IL KAG+FP+ VWLP A+
Sbjct: 180 AILYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIFVFATKAGVFPMFVWLPSAYYA 239
Query: 225 AKTYVSSILSGIAVKAPIYGLILLSNL---GDLSF----LKPFAILSMAFGVIMAILQFN 277
+ + + K +Y + +L ++SF + A+L++ FG + A+ N
Sbjct: 240 PPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYAN 299
Query: 278 AKRLLAYHTVSQMGYILLG---LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKD 334
K+++ Y+ + +G IL+G ++ + GA Y+L + K LFL +G +I D
Sbjct: 300 IKKIILYNVMIAVGVILVGVAMMTESGMIGAIYYTLHDMLVKLALFLLIGIMIKITGTAD 359
Query: 335 LKYLG---SRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATTEKAI----IYAVSFG 385
L+ G R +L S I +L+++G+ G K ++ +T E+ + +
Sbjct: 360 LRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSS 419
Query: 386 TAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGVLTVL 422
+S + +L +G+ +P + + + + LT +
Sbjct: 420 LVVLYSVIRIFL-QGFFGQPKGYDLNNKVDVKYLTTI 455
>sp|Q04050|NU4M_BRACM NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 >gi|282888|pir||S26870 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - field
mustard mitochondrion >gi|12770|emb|CAA43207.1| (X60794)
NADH dehydrogenase subunit 4 [Brassica rapa]
>gi|738524|prf||2001250A NADH dehydrogenase:SUBUNIT=4
[Brassica rapa]
Length = 495
Score = 108 bits (266), Expect = 2e-22
Identities = 82/293 (27%), Positives = 145/293 (48%), Gaps = 28/293 (9%)
Query: 71 IGIEVGLDWVS------STFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFI 124
I +G+D +S +TFLI + G S + R + ++ L+ +I F
Sbjct: 80 INFYLGIDGISLFFVILTTFLIPICISVGWSGM----RSYGKEYITAFLIREFLMIAVFR 135
Query: 125 SKDYFNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQT 179
D FYVF E + + +I S+ R+ AA+++ L ++ S ++LA+ +I FQT
Sbjct: 136 MLDLLLFYVFPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQT 195
Query: 180 GY--LNVELASEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGI 236
G L + L +E R L +A+ S +K + P+H+WLP+AH A T S IL+GI
Sbjct: 196 GTTDLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGI 255
Query: 237 AVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQ 289
+K +G + S L F+ + +++ + + Q + K+++AY +V+
Sbjct: 256 PLKFGTHGFLRFSIPMFPEATLCSTPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAH 315
Query: 290 MGYILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLG 339
M + +G+ + N+ G+ L L+H + LFL VG + D K + ++Y G
Sbjct: 316 MNLVTIGMFSPNIQGIGGSILPMLSHGLVPSALFLCVGVLYDRHKTRLVRYYG 368
>emb|CAA69742.3| (Y08501) NADH dehydrogenase subunit 4 [Arabidopsis thaliana]
Length = 495
Score = 108 bits (266), Expect = 2e-22
Identities = 82/293 (27%), Positives = 145/293 (48%), Gaps = 28/293 (9%)
Query: 71 IGIEVGLDWVS------STFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFI 124
I +G+D +S +TFLI + G S + R + ++ L+ +I F
Sbjct: 80 INFYLGIDGISLFFVILTTFLIPICISVGWSGM----RSYGKEYITAFLIREFLMIAVFR 135
Query: 125 SKDYFNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQT 179
D FYVF E + + +I S+ R+ AA+++ L ++ S ++LA+ +I FQT
Sbjct: 136 MLDLLLFYVFPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQT 195
Query: 180 GY--LNVELASEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGI 236
G L + L +E R L +A+ S +K + P+H+WLP+AH A T S IL+GI
Sbjct: 196 GTTDLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGI 255
Query: 237 AVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQ 289
+K +G + S L F+ + +++ + + Q + K+++AY +V+
Sbjct: 256 PLKFGTHGFLRFSIPMFPEATLCSTPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAH 315
Query: 290 MGYILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLG 339
M + +G+ + N+ G+ L L+H + LFL VG + D K + ++Y G
Sbjct: 316 MNLVTIGMFSPNIQGIGGSILPMLSHGLVPSALFLCVGVLYDRHKTRLVRYYG 368
>gi|11466552 NADH dehydrogenase, subunit 4 [Reclinomonas americana]
>gi|7432306|pir||S78183 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 4 - Reclinomonas americana (ATCC
50394) mitochondrion >gi|2258382|gb|AAD11916.1|
(AF007261) NADH dehydrogenase, subunit 4 [Reclinomonas
americana]
Length = 493
Score = 107 bits (265), Expect = 3e-22
Identities = 95/362 (26%), Positives = 171/362 (46%), Gaps = 37/362 (10%)
Query: 7 VISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGG 66
++ +I + ++ +F F I G + + Y ++L +FL + F S
Sbjct: 10 LLPTIILTPILGVFILFLIPGWKTSLIKQVSLYASLLTFILSLFL-WIFFDKSTSKFQFV 68
Query: 67 YP------REIGIEVGLDWVS------STFLIAEFLVFGASSLYLVKRVTNWKELSL-LL 113
Y I +G+D +S +TFLI ++ G S+ N KE + L
Sbjct: 69 YEVNWIETLNIHFSLGIDGISLFLVILTTFLIPLCILTGWESIK-----HNIKEYMICFL 123
Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA---SQDREAAFKYLLLSMT--ASYVL 168
L+ + LI F D FY+F E + + +I S++R+ Y+L T S ++
Sbjct: 124 LLDALLIMIFCVLDLVLFYIFFESVLIPMFIVIGVWGSRERKVRAAYMLFLYTFFGSLLM 183
Query: 169 ILALGMIYFQTGYLNVE--LASEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNA 225
++A+ +IYF G +++ L +E L LA IS +K + P HVWLP+AH A
Sbjct: 184 LIAIMVIYFDAGTTDIQVLLTTEFSQERQKLLWLAFFISFAIKIPMVPFHVWLPEAHVEA 243
Query: 226 KTYVSSILSGIAVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNA 278
T S +L+G+ +K YG++ S + + +I+++ + + + Q +
Sbjct: 244 PTAGSVLLAGVLLKLGGYGILRFSIPMFPEATVYFTPLVYTMSIIAIIYTSLTTLRQIDL 303
Query: 279 KRLLAYHTVSQMGYILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDL 335
KR++AY +V+ M ++ +G+ + N+ G+ L L+H + LFL +G + D K + L
Sbjct: 304 KRIIAYSSVAHMNFVTIGMFSLNMQGLEGSILLMLSHGIVSSALFLCIGVLYDRHKTRLL 363
Query: 336 KY 337
KY
Sbjct: 364 KY 365
>pir||E81220 NADH dehydrogenase I, M chain NMB0258 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225481|gb|AAF40712.1| (AE002382) NADH dehydrogenase
I, M subunit [Neisseria meningitidis MC58]
Length = 498
Score = 106 bits (263), Expect = 5e-22
Identities = 91/330 (27%), Positives = 162/330 (48%), Gaps = 34/330 (10%)
Query: 70 EIGIEVGLDWVSSTFLIAE----FLVFGASSLYLVKRVTNWKELSLLLLMHSGLI-GAFI 124
+I +G+D +S F+I LV A + KR + L++ SGLI GAF
Sbjct: 75 KINYALGVDGISVLFIILNAFITLLVVLAGWEVIQKRPAQYMAAFLIM---SGLINGAFA 131
Query: 125 SKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVLILALGMIYFQTG 180
++D FYVF E + Y +I + A+ K L ++ S ++++A+ +Y+QTG
Sbjct: 132 AQDAILFYVFFEGMLIPLYLIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYYQTG 191
Query: 181 YLNV---ELASEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGI 236
++ + ++ L L +A +S +K +FP+H WLPDAH A T S +L+ I
Sbjct: 192 SFSIVDFQNIEQIPLGVQQLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAI 251
Query: 237 AVKAPIYGLI--LLSNLGDLS-FLKPFAILSMAFGVI----MAILQFNAKRLLAYHTVSQ 289
+K YG + +L + D + + P I+ VI +A++Q + K+L+AY ++S
Sbjct: 252 TLKLGAYGFLRFILPIMPDAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISH 311
Query: 290 MGYILLG--------LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDL-KYLGS 340
MG++ LG L + GA + ++H +F+ +G + D +++ Y G
Sbjct: 312 MGFVTLGMFLFVDGQLDDWALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGV 371
Query: 341 RNIL--LIVSIAILSLAISGLGITIGGVAK 368
N++ + + +A +GL T G V +
Sbjct: 372 VNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
>gi|9838467 NADH dehydrogenase subunit 4 [Beta vulgaris]
>gi|9087329|dbj|BAA99473.1| (AP000397) NADH
dehydrogenase subunit 4 [Beta vulgaris]
Length = 495
Score = 106 bits (263), Expect = 5e-22
Identities = 93/352 (26%), Positives = 166/352 (46%), Gaps = 43/352 (12%)
Query: 75 VGLDWVS------STFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDY 128
+G+D +S +TFLI ++ G S + R + ++ L+ +I F D
Sbjct: 84 LGIDGISLFFVILTTFLIPICILVGWSGM----RSYGKEYITASLIREFLMIAVFCMLDL 139
Query: 129 FNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGY-- 181
FYV E + + +I S+ R+ AA+++ L ++ S ++LA+ +I QTG
Sbjct: 140 LLFYVLSESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTD 199
Query: 182 LNVELASEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
L + L +E R L +A S +K + P+H+WLP+AH A T S IL+GI +K
Sbjct: 200 LQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKL 259
Query: 241 PIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI 293
YG + S L F+ + +++ + + + Q + K+++AY +V+ M ++
Sbjct: 260 GTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFV 319
Query: 294 LLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS--------RN 342
+G+ + N+ G+ L L+H + LFL VG + D K + ++Y G
Sbjct: 320 TIGMFSLNIQGIGGSILPMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFST 379
Query: 343 ILLIVSIAILSLA-----ISGLGITIGGVAKSYLATTEKAIIYAVSFGTAFS 389
I ++A +SL I I +G ++ L T A+ + G A+S
Sbjct: 380 IFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAAL--GMILGAAYS 429
>pir||T14236 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Synechococcus sp. (strain PCC 7002)
>gi|2232047|gb|AAB62185.1| (U97516) NADH dehydrogenase
subunit 4 [Synechococcus PCC7002]
Length = 498
Score = 106 bits (263), Expect = 5e-22
Identities = 94/325 (28%), Positives = 166/325 (50%), Gaps = 28/325 (8%)
Query: 71 IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKEL--SLLLLMHSGLIGAFISKDY 128
+ +G+D +S ++ L+ ++Y + + +L SL+LL++SG+ GA I+ +
Sbjct: 67 LNYNLGVDGLSLPLIVLNSLLT-LVAIYSIGESNHRPKLYYSLILLINSGITGALIANNL 125
Query: 129 FNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILA-LGMIYF-QTGYL 182
F++F E+ + Y LIA E A+ K+L+ + + ++ A LG+++ Q+
Sbjct: 126 LLFFLFYEIELIPFYLLIAIWGGEKKGYASTKFLIYTAISGLCVLAAFLGIVWLSQSSNF 185
Query: 183 NVELASEVGLRDDTPLRLAAISLI---LKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVK 239
+ E + L +T + L I LI +K + PLH WLPDA+ A V+ +L G+ K
Sbjct: 186 DFENLTLENLEFNTKVILLTILLIGFGIKIPLVPLHTWLPDAYVEANPAVTVLLGGVFAK 245
Query: 240 APIYGLIL--LSNLGDL-SFLKP----FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGY 292
YGL+ L D+ S + P +S+ +G + AI Q + KR++AY ++ MGY
Sbjct: 246 LGTYGLVRFGLQLFPDVWSTVSPALAVIGTVSVMYGSLAAIAQRDLKRMVAYSSIGHMGY 305
Query: 293 ILLGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS-----RNIL 344
IL+ + G ++ GA ++H++ LF VG I +DL L R +
Sbjct: 306 ILVSTAAGTELSLLGAVAQMISHSLILALLFHLVGIIERKVGTRDLDVLNGLMNPVRGLP 365
Query: 345 LIVSIAILS-LAISGLGITIGGVAK 368
L S+ IL+ +A +G+ +G VA+
Sbjct: 366 LTSSLLILAGMASAGIPGLVGFVAE 390
>pir||E83315 NADH dehydrogenase I chain M PA2648 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948717|gb|AAG06036.1|AE004693_7 (AE004693) NADH
dehydrogenase I chain M [Pseudomonas aeruginosa]
Length = 509
Score = 106 bits (262), Expect = 6e-22
Identities = 104/373 (27%), Positives = 181/373 (47%), Gaps = 50/373 (13%)
Query: 100 VKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDRE-- 152
++R + L+LL ++ G+IG F++ D F F+ F E+ V Y LIA S D +
Sbjct: 110 IQRRIGFFHLNLLWIL-GGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHSSDDGKKT 168
Query: 153 ---AAFKYLLLSMTASYVLILA-LGMIYFQ---TGYLNVELAS----EVGLRDDTPLRLA 201
AA K+ + + + V+++A LG+++ TG + + A+ ++ + L L
Sbjct: 169 RIYAATKFFIFTQASGLVMLVAILGLVFVNFNATGVITFDYATLLKTQLSPHVEWLLMLG 228
Query: 202 A-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI-----LLSNLGDLS 255
++ +K + P+H WLPDAH+ A T S L+GI +K YGLI L N +
Sbjct: 229 FFVAFAVKMPVVPVHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLIRFALPLFPNAS--A 286
Query: 256 FLKPFA----ILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLY 308
P A I+ + +G +++ Q + KRL+AY +VS MG++++G+ +G+ + G +
Sbjct: 287 EFAPIAMWLGIIGIFYGALLSFAQTDIKRLVAYSSVSHMGFVMIGIYSGSQVALQGVVVQ 346
Query: 309 SLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS----RNILLIVSI--AILSLAISGLGIT 362
+AH + LF+ G + + +D++ +G L +S+ A SL + G G
Sbjct: 347 MIAHGLSAAALFILCGQLYERLHTRDMRKMGGLWSRMPYLPAISLFFASASLGLPGTGNF 406
Query: 363 IGGVAKSYLA-TTEKAIIYAVSFGTAFSFSKLNYYLWKGY-GNEPTNFSILP------SL 414
+G A II +FG F+ + + Y G ++ IL S+
Sbjct: 407 VGEFLILIGAFKVVPVIIVIATFGLVFASVYSLIMIHRAYFGPSQSDEPILGLDARELSM 466
Query: 415 TLG--VLTVLVGI 425
LG VL VL+G+
Sbjct: 467 VLGLAVLLVLLGV 479
>pir||H81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain M NMA2229
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7380848|emb|CAB85440.1| (AL162758) NADH
dehydrogenase chain M [Neisseria meningitidis Z2491]
Length = 498
Score = 106 bits (262), Expect = 6e-22
Identities = 91/330 (27%), Positives = 162/330 (48%), Gaps = 34/330 (10%)
Query: 70 EIGIEVGLDWVSSTFLIAE----FLVFGASSLYLVKRVTNWKELSLLLLMHSGLI-GAFI 124
+I +G+D +S F+I LV A + KR + L++ SGLI GAF
Sbjct: 75 KINYALGVDGISVLFIILNAFITLLVVLAGWEVIQKRPAQYMAAFLIM---SGLINGAFA 131
Query: 125 SKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVLILALGMIYFQTG 180
++D FYVF E + Y +I + A+ K L ++ S ++++A+ +Y+QTG
Sbjct: 132 AQDAILFYVFFEGMLIPLYLIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYYQTG 191
Query: 181 YLNV---ELASEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGI 236
++ + ++ L L A +S +K +FP+H WLPDAH A T S +L+ I
Sbjct: 192 SFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAI 251
Query: 237 AVKAPIYGLI--LLSNLGDLS-FLKPFAILSMAFGVI----MAILQFNAKRLLAYHTVSQ 289
+K YG + +L + D + + P I+ VI +A++Q + K+L+AY ++S
Sbjct: 252 TLKLGAYGFLRFILPIMPDAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISH 311
Query: 290 MGYILLG--------LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDL-KYLGS 340
MG++ LG L+ + GA + ++H +F+ +G + D +++ Y G
Sbjct: 312 MGFVTLGMFLFVNGQLNDWALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGV 371
Query: 341 RNIL--LIVSIAILSLAISGLGITIGGVAK 368
N++ + + +A +GL T G V +
Sbjct: 372 VNVMPKFAAFMMLFGMANAGLPATSGFVGE 401
>gi|11465928 NADH dehydrogenase subunit 4 [Pedinomonas minor]
>gi|7432333|pir||T11318 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 4 - Pedinomonas minor mitochondrion
>gi|4378772|gb|AAD19670.1| (AF116775) NADH dehydrogenase
subunit 4 [Pedinomonas minor]
Length = 478
Score = 106 bits (262), Expect = 6e-22
Identities = 85/318 (26%), Positives = 154/318 (47%), Gaps = 34/318 (10%)
Query: 75 VGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSL--LLLMHSGLIGAFISKDYFNFY 132
+G+D S FLI +F +Y +K + ++ L L+ + L+ FIS+D F+
Sbjct: 72 IGIDKFSFLFLILLSFLFSICFIYNIKNIIIKSKIWLFSLISIFIALLFTFISQDLLTFF 131
Query: 133 VFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELA 187
+ E + + ++ S AAF ++L++ S ++ I+ + LN
Sbjct: 132 IGFEFVLIPLFWIVIEFGSRSNKIFAAFFIVILTLFGSCFFLIGFFSIFLEISSLNFNFL 191
Query: 188 SEVGLRDDTPLRLAAI------SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAP 241
S L + R + I L++K + PLH+WLP+AH A T S +L+G+ +K
Sbjct: 192 S-FSLSYLSESRQSFIWIFLFLGLMVKVPLIPLHLWLPEAHGEAPTVGSVLLAGVVLKLG 250
Query: 242 IYGLI-----LLSNLGDL--SFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYIL 294
YGLI L SN+ S L + L+M F +++I Q + K+ +AY +++ +G ++
Sbjct: 251 TYGLIRCLVFLFSNVEVFIGSILFAYGFLNMVFAALISIRQLDIKKAIAYGSIAHIGTVV 310
Query: 295 LGLS---TGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAI 351
+GLS + +G+ + + H + LF VG++ D G+RNI S+A+
Sbjct: 311 IGLSEVFNFSEFGSVIIIIFHGLVSPLLFFLVGSLYDR--------FGTRNIYYFGSLAL 362
Query: 352 LS--LAISGLGITIGGVA 367
+S +++ +G VA
Sbjct: 363 ISPLFSVNWFLAVLGNVA 380
>gi|7524971 NADH dehydrogenase subunit 4 [Dictyostelium discoideum]
>gi|7489915|pir||T13787 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 4 - slime mold (Dictyostelium
discoideum) mitochondrion >gi|11358984|pir||T43747 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - slime
mold (Dictyostelium discoideum) mitochondrion
>gi|2251092|dbj|BAA21118.1| (D16579) NADH dehydrogenase
subunit 4 [Dictyostelium discoideum]
>gi|4958874|dbj|BAA78051.1| (AB000109) NADH
dehydrogenase subunit 4 [Dictyostelium discoideum]
Length = 540
Score = 106 bits (261), Expect = 8e-22
Identities = 82/323 (25%), Positives = 154/323 (47%), Gaps = 26/323 (8%)
Query: 67 YPREIGIEVG--LDWVSSTFLIAEFLVF---GASSLYLVKRVTNWKELSLLLLMHSGLIG 121
Y + I +G +D +S+ F+ ++ S+ ++K T K +LLL +I
Sbjct: 74 YSNNVNINIGYSIDGISAIFIFLTIILILSCNLISIRVIKEKTEQKFQIMLLLTEILIIN 133
Query: 122 AFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIY 176
F + D Y+ E + + +I ++ + AAF+ L+ ++ S +++++G++Y
Sbjct: 134 FFAATDLVQLYIVYEATLIPMVIMIGVWGSRTEKKIAAFQILIYTLIGSIFMLMSIGILY 193
Query: 177 FQTGYLNVELASE-VGLRDDTPLRLAAISLIL----KAGIFPLHVWLPDAHSNAKTYVSS 231
G + + E + + + +L I + K I PLH+WL AH A T S
Sbjct: 194 STLGTTDYIMIREYIDVLPENVRKLIFIGFFIGFAVKIPIAPLHLWLLRAHVEAPTAGSV 253
Query: 232 ILSGIAVKAPIYGLI-----LLSNLGDLSF--LKPFAILSMAFGVIMAILQFNAKRLLAY 284
+L+GI +K YG I L +L + F + ++S+ + I + Q + KR++AY
Sbjct: 254 LLAGILLKLGGYGYIRYNIGLFPDLCEYYFPIIGGICLISILYTGIATLTQLDVKRIVAY 313
Query: 285 HTVSQMGYILLGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDL-KYLGS 340
++S M I+LGL +G + G + + H + GGLFL +G I D K + + Y
Sbjct: 314 SSISHMNVIVLGLFSGVLQGIEGGIILMIGHGVVSGGLFLCIGVIYDRCKTRIVYAYNNL 373
Query: 341 RNILLIVSIAILSLAISGLGITI 363
+++ I++I L + + I
Sbjct: 374 VHVMPIMAILFFLLVLGNIAFPI 396
>pir||T12399 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - Sarcophyton
glaucum mitochondrion >gi|4091913|gb|AAC99647.1|
(AF064823) NADH dehydrogenase subunit 2 [Sarcophyton
glaucum]
Length = 457
Score = 106 bits (261), Expect = 8e-22
Identities = 104/378 (27%), Positives = 178/378 (46%), Gaps = 33/378 (8%)
Query: 37 LTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASS 96
LTY +KA P L + G VG + + L W + ++ ++ G +
Sbjct: 22 LTYGLKA--------PTLRVAILLAGTVGAAGL-LAVSPLLCWTQAIKMLV--MLSGLAI 70
Query: 97 LYLVKRVTNWKELSLLLLM----HSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDR- 151
L ++ T+ + SLL+L+ + LIGA + + Y+ +E+ + + L+A
Sbjct: 71 LCMLNHRTSHRTSSLLILLVILGNLLLIGA---TNLISIYLALEMQTLCMFILVAYNKNS 127
Query: 152 ----EAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLR--LAAISL 205
EA KY +L +S + + +IY TG L ++ + T L ISL
Sbjct: 128 LLSAEAGLKYFVLGALSSGLFLFGCALIYGSTGELELQFIRMCTVSYGTLAGKCLITISL 187
Query: 206 ILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSM 265
+ K P H+W PD + A T+V+++LS I K + +I+ L D+ L ++S+
Sbjct: 188 LFKVSAAPFHMWAPDVYEGAPTWVTALLS-IVPKLGVLAIIVQIGLNDMGLLIA-GLISL 245
Query: 266 AFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG--ATLYSLAHAMFKGGLFLGV 323
G I A+ Q KRLLAY +S MG++LLG++ G++ A+L + + L V
Sbjct: 246 IVGAIGALNQTRIKRLLAYSGISHMGFVLLGIAIGSIESLQASLMYIGAYVITQILLWSV 305
Query: 324 GAIIDARKRKDLKYLG-SR-NILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYA 381
II ++ +++ G SR N +L +++A L+ +G+ IG + K Y+ Y
Sbjct: 306 VLIISPKRDMIIEFSGVSRLNPMLALALAAGLLSTAGIPPLIGFLTKWYVILVAVGQGYY 365
Query: 382 VSFGTAFSFSKLN--YYL 397
+S TA S + YYL
Sbjct: 366 ISALTALICSVIAGVYYL 383
>sp|P23482|HYFB_ECOLI HYDROGENASE-4 COMPONENT B >gi|7446810|pir||A65024 hypothetical
protein b2482 (bcp 3' region) - Escherichia coli (strain
K-12) >gi|1788827|gb|AAC75535.1| (AE000335) hydrogenase
4 membrane subunit [Escherichia coli K12]
>gi|1799910|dbj|BAA16360.1| (D90876) similar to [PIR
Accession Number D49749] [Escherichia coli]
>gi|1805541|dbj|BAA16370.1| (D90877) similar to [PIR
Accession Number D49749] [Escherichia coli]
>gi|2668496|gb|AAB88564.1| (M63654) HyfB [Escherichia
coli]
Length = 672
Score = 105 bits (260), Expect = 1e-21
Identities = 89/288 (30%), Positives = 141/288 (48%), Gaps = 35/288 (12%)
Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYAL-IASQDR---EAAFKYLLLSMTASYVLILAL 172
+ ++ + + F F V E+ ++SS+ L IA QD+ A Y ++ S ++++A
Sbjct: 123 ASMVALLVMDNAFWFIVLFEMMSLSSWFLVIARQDKTSINAGMLYFFIAHAGSVLIMIAF 182
Query: 173 GMIYFQTGYLNVE----LASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTY 228
++ ++G L+ L+ GL L LA KAG+ PLH WLP AH A ++
Sbjct: 183 LLMGRESGSLDFASFRTLSLSPGLASAVFL-LAFFGFGAKAGMMPLHSWLPRAHPAAPSH 241
Query: 229 VSSILSGIAVKAPIYGL--ILLSNLGDLSFLKPFAILSMAFGVIMAIL-------QFNAK 279
S+++SG+ VK I+G+ + + L + IL MA G I A+L + + K
Sbjct: 242 ASALMSGVMVKIGIFGILKVAMDLLAQTGLPLWWGILVMAIGAISALLGVLYALAEQDIK 301
Query: 280 RLLAYHTVSQMGYILLG--------------LSTGNVYGATLYSLAHAMFKGGLFLGVGA 325
RLLA+ TV +G ILL L+ + GA + L HA+FKG LFLG GA
Sbjct: 302 RLLAWSTVENVGIILLAVGVAMVGLSLHDPLLTVVGLLGALFHLLNHALFKGLLFLGAGA 361
Query: 326 IIDARKRKDLKYLGS---RNILLIVSIAILSLAISGLGITIGGVAKSY 370
II D++ +G+ R + I LAIS + G +++ Y
Sbjct: 362 IISRLHTHDMEKMGALAKRMPWTAAACLIGCLAISAIPPLNGFISEWY 409
>pir||S61395 probable Na+/H+-exchanging protein system component - Bacillus sp.
(strain C-125) >gi|854655|dbj|BAA06609.1| (D31823) ORF1
[Bacillus sp.] >gi|10173935|dbj|BAB05038.1| (AP001511)
Na+/H+ antiporter [Bacillus halodurans]
Length = 804
Score = 105 bits (260), Expect = 1e-21
Identities = 100/365 (27%), Positives = 172/365 (46%), Gaps = 49/365 (13%)
Query: 41 VKALYLLGVFLPMLLFPLSRGGVVGG---YPREIGIEVGLDWVSSTFLIAEFLVFGASSL 97
V L L G FL +L S GGV+ + +GI + +V L+ L+ G +L
Sbjct: 36 VLPLVLFGYFLSLLPIT-SNGGVIHETIPWVPSLGINFTV-YVDGLSLLFALLITGIGTL 93
Query: 98 -------YLVKRVTNWKELSLLLLMHSG-LIGAFISKDYFNFYVFMELSAVSSYALIA-- 147
YL K+ + LLM G ++G +S + YVF EL++++S LI+
Sbjct: 94 VALYSIYYLSKKTEKLNNFYVYLLMFMGAMLGVVLSDNLIVLYVFWELTSLASSLLISYW 153
Query: 148 ---SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNV-ELASEVGLRDDTPLRLAAI 203
+ A K +L+++ + ++ ++Y TG ++ E+ + + L L A+
Sbjct: 154 FHREKSTYGAQKSMLITVFGGFAMLGGFSLLYVITGTFSIREIIEQADAVLASTLFLPAM 213
Query: 204 SLIL-----KAGIFPLHVWLPDAHSNAKTYVSSIL-SGIAVKAPIYGLILLSNLGDLS-- 255
L+L K+ FP H+WLPDA A T VS+ L S VKA +Y + L+ + +
Sbjct: 214 LLVLLGAFTKSAQFPFHIWLPDA-MEAPTPVSAYLHSATMVKAGLYLVARLTPVFGGTPE 272
Query: 256 ---FLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI--LLGLSTGNVY------- 303
L F I+++ +G I A+ Q + K +LA+ T+SQ+G I L GL + ++
Sbjct: 273 WFWLLAGFGIITLCWGSISAVRQKDLKSILAFSTISQLGLIMCLFGLGSATLHFDPTDSM 332
Query: 304 ---------GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSL 354
A + + HA FKG LF+ VG I +D++ LG ++ V+ + +
Sbjct: 333 IKFYATATLAAVFHLINHATFKGSLFMTVGIIDHETGTRDIRKLGGLMAIMPVTFTVSLI 392
Query: 355 AISGL 359
++ +
Sbjct: 393 GLAAM 397
>sp|P57263|NUOM_BUCAI NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
M) >gi|10038848|dbj|BAB12883.1| (AP001118) NADH
dehydrogenase I chain M [Buchnera sp. APS]
Length = 505
Score = 105 bits (260), Expect = 1e-21
Identities = 84/305 (27%), Positives = 145/305 (47%), Gaps = 43/305 (14%)
Query: 72 GIE--VGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSL--------LLLMHSGLIG 121
GIE + LD +S LI +S L ++ + +W E+ +L+ +G+IG
Sbjct: 76 GIEFNIALDGLSIIMLIF------SSFLSIIAIICSWNEIKKNEGFFYFNFMLVFTGIIG 129
Query: 122 AFISKDYFNFYVFMELSAVSSYALIA--------SQDREAAFKYLLLSMTASYVLILALG 173
FIS D F F+ F E+ + Y LIA ++ AA K+ L S T+ +L+ ++
Sbjct: 130 VFISCDLFLFFCFWEIMLIPMYFLIALWSDKTEKKKNFLAANKFFLYSQTSGLILLSSIL 189
Query: 174 MIYFQTGYLNVELASEVGLRDDTPLRLAA---------ISLILKAGIFPLHVWLPDAHSN 224
++ F Y L L + P+ + +S +K I P H WLPD HS
Sbjct: 190 LLVFSHYYSTNILTFNYNLLINKPINIYVEYIVMIGFFLSFAIKMPIVPFHGWLPDIHSR 249
Query: 225 AKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFGVI-------MAILQFN 277
+ + S + G+ +K Y L+ + + K F+++++ +G+I +A Q N
Sbjct: 250 SLSCGSVEIIGVLLKTAPYALLRYNLVLFPDSTKSFSLIAVFWGIISIFYGAWIAFSQTN 309
Query: 278 AKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKD 334
KRL+AY +VS MG IL+G+ + N + G + L++++ L + G I K +D
Sbjct: 310 IKRLIAYSSVSHMGLILIGIYSNNERALQGVVIQMLSNSLTVAALCILSGQIYKRFKTQD 369
Query: 335 LKYLG 339
+ +G
Sbjct: 370 MSKMG 374
>gi|11467925 NADH dehydrogenase subunit 4 [Scenedesmus obliquus]
>gi|7711047|emb|CAB90371.1| (X17375) NADH dehydrogenase
subunit 4 [Scenedesmus obliquus]
>gi|8099208|gb|AAF72063.1|AF204057_18 (AF204057) NADH
dehydrogenase subunit 4 [Scenedesmus obliquus]
Length = 521
Score = 104 bits (258), Expect = 2e-21
Identities = 81/289 (28%), Positives = 134/289 (46%), Gaps = 20/289 (6%)
Query: 71 IGIEVGLDWVS--STFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDY 128
I +E GLD +S L A + + + + LLL + S L F S D
Sbjct: 96 IKLEFGLDSLSLWMVLLTAALMPLAVLCSWNTQNAHSQSFYRLLLALESFLFRCFTSLDL 155
Query: 129 FNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLN 183
FYV E S + + LI ++ AA+ +L ++ S ++ L ++Y + G N
Sbjct: 156 LCFYVLYECSLLPMFLLIGLGGSRARKVRAAYLLVLYTLVGSLAMLPCLLLLYSRAGTTN 215
Query: 184 VELASEVGLRDDTPLRL---AAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
L + + L L ++ +K + PLH+WLP+AH T S +L+G+ +K
Sbjct: 216 YLLLRSLNIESSRQLLLWWGFFLAFAVKVPLMPLHLWLPEAHVERSTAGSVLLAGVLLKL 275
Query: 241 PIYGLI---LLSNLGDLSFLKP----FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI 293
YGL+ L ++L P ++ + + + + Q + K+++AY +V+ M +
Sbjct: 276 GTYGLLRFNLYMFPERSAYLGPRVSTICLIGVIYRSLTTLRQVDLKKIVAYSSVAHMSMV 335
Query: 294 LLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLG 339
+L L T N + G+ LAH + LFL VGA+ D K LKYLG
Sbjct: 336 VLALFTMNEVGILGSIFTMLAHGVRSPALFLCVGALYDRTHTKRLKYLG 384
>sp|P27572|NU4M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 >gi|14255|emb|CAA40452.1|
(X57163) NADH-ubiquinone oxidoreductase chain 4
[Triticum aestivum] >gi|21824|emb|CAA40453.1| (X57164)
NADH-ubiquinone oxidoreductase chain 4 [Triticum
aestivum]
Length = 495
Score = 104 bits (256), Expect = 3e-21
Identities = 93/356 (26%), Positives = 166/356 (46%), Gaps = 43/356 (12%)
Query: 71 IGIEVGLDWVS------STFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFI 124
I + +G+D +S +TFLI + G S + R + ++ L+ +I
Sbjct: 80 IHLYMGIDGLSLFFVILTTFLIPICISVGWSGM----RSFGKEYITAFLIREFLMIAVSC 135
Query: 125 SKDYFNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQT 179
D FYV E + + +I S+ R+ AA+++ L ++ S ++LA+ +I QT
Sbjct: 136 MLDPLLFYVLSESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQT 195
Query: 180 GY--LNVELASEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGI 236
G L + L +E R L +A S +K + P+H+WLP+AH A T S IL+GI
Sbjct: 196 GTTDLQILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGI 255
Query: 237 AVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQ 289
+K YG + S L F+ + +++ + + + Q + K+++AY +V+
Sbjct: 256 LLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAH 315
Query: 290 MGYILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS------ 340
M + +G+ + N+ G+ L L+H + LFL VG + D K + ++Y G
Sbjct: 316 MNLVTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMP 375
Query: 341 --RNILLIVSIAILSLA-----ISGLGITIGGVAKSYLATTEKAIIYAVSFGTAFS 389
I ++A +SL I I +G ++ L T +A+ + G A+S
Sbjct: 376 NFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLRAL--GMILGAAYS 429
>sp|P50974|NUOM_RHOCA NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
M) >gi|3282578|gb|AAC25004.1| (AF029365) NUOM
[Rhodobacter capsulatus] >gi|1586527|prf||2204231H NADH
ubiquinone oxidoreductase [Rhodobacter capsulatus]
Length = 512
Score = 103 bits (255), Expect = 4e-21
Identities = 93/361 (25%), Positives = 171/361 (46%), Gaps = 43/361 (11%)
Query: 37 LTYEVKALYLLGV--FLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFG- 93
+T+ V L L G P + F R ++G + ++G+D +S F++ +
Sbjct: 44 VTFLVSLLLLAGFDPANPGMQFVEDRAWIMG-----LHYKLGVDGISILFVMLTTFLMPL 98
Query: 94 --ASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA---- 147
AS+ ++ RV + + L++ + +IG F++ D FY+F E + + +I
Sbjct: 99 TIASAWHVETRVKEY--MIAFLVLEALMIGVFVALDLVLFYLFFEAGLIPMFLIIGIWGG 156
Query: 148 SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLN-VELASEVGLRDDTP--------- 197
+ AAFK+ L + S ++++A+ +Y G + V L S D P
Sbjct: 157 KERIYAAFKFFLYTFLGSVLMLVAMVAMYMMAGTTDIVTLMSFDFPHADLPFLGWWTLTG 216
Query: 198 -----LRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLS-- 249
L LA S +K ++P+H WLPDAH A T S +L+ + +K YG + S
Sbjct: 217 GVQTLLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAVLLKMGGYGFLRFSLP 276
Query: 250 --NLGD---LSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGN--- 301
+G +F+ + +++ + ++A+ Q + K+L+AY +V+ MGY+ +G+ N
Sbjct: 277 MFPVGAETMTTFVFILSAVAIVYTSLVALAQEDMKKLIAYSSVAHMGYVTMGIFAANQQG 336
Query: 302 VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDL-KYLGSRNILLIVSIAILSLAISGLG 360
V GA L+H G LFL VG I D +++ Y G N + ++ + ++ +G
Sbjct: 337 VDGAIFQMLSHGFISGALFLCVGVIYDRMHTREIAAYGGLVNRMPAYALIFMFFTMANVG 396
Query: 361 I 361
+
Sbjct: 397 L 397
>gi|11466752 ndh4 [Marchantia polymorpha] >gi|128731|sp|P06263|NU4C_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4, CHLOROPLAST
>gi|66180|pir||DELVN4 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 4 - liverwort (Marchantia polymorpha)
chloroplast >gi|11723|emb|CAA28134.1| (X04465) ndh4
[Marchantia polymorpha]
Length = 499
Score = 103 bits (254), Expect = 5e-21
Identities = 81/276 (29%), Positives = 130/276 (46%), Gaps = 28/276 (10%)
Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTAS- 165
L+L M+SG IG F S+D F+ EL + Y L+A + AA K++L + S
Sbjct: 117 LMLAMYSGQIGLFASQDILLFFFMWELELLPVYLLLAMWGGKRRLYAATKFILYTAAGSL 176
Query: 166 YVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAA-----ISLILKAGIFPLHVWLPD 220
++LI L M ++ + + + + L + I+ +K I P H WLPD
Sbjct: 177 FILIGGLIMAFYNSNEFTFDFQFLINKKYPLELEIIIYLSFLIAYAVKLPIIPFHTWLPD 236
Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL----SFLKPFAILSMAFGVIMAIL-- 274
H A +L+GI +K YGLI + N+ L SF P+ ++ A ++ A L
Sbjct: 237 THGEAHYSTCMLLAGILLKMGAYGLIRI-NMELLPHAHSFFAPWLVIVGAIQIVYAALTS 295
Query: 275 --QFNAKRLLAYHTVSQMGYILLG---LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA 329
Q N KR +AY +VS MG++L+G ++ + GA L ++H + LF G D
Sbjct: 296 LSQRNLKRRIAYSSVSHMGFVLIGIGSITNLGLNGAILQMISHGLIGASLFFLAGISYDR 355
Query: 330 RKRKDLKYLGS------RNILLIVSIAILSLAISGL 359
+ L +G + L S ++ SLA+ G+
Sbjct: 356 TRTLVLDQMGGIGNSMPKIFTLFTSCSMASLALPGM 391
>sp|O53308|NUON_MYCTU NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
N) >gi|7431996|pir||D70946 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 2 [similarity] -
Mycobacterium tuberculosis (strain H37RV)
>gi|2827568|emb|CAA16623.1| (AL021646) nuoN
[Mycobacterium tuberculosis]
Length = 531
Score = 103 bits (254), Expect = 5e-21
Identities = 86/289 (29%), Positives = 140/289 (47%), Gaps = 32/289 (11%)
Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ------DREAAFKYLLLSMTA 164
L +L G++ S D +V +E+ ++ Y + +EAA KY LL +
Sbjct: 155 LAMLSVGGMMVFPASNDLLTMFVALEVLSLPLYLMCGLARNRRLLSQEAAMKYFLLGAFS 214
Query: 165 SYVLILALGMIYFQTGYLNVE-LASEVGLRDDTPLRLA-----AISLILKAGIFPLHVWL 218
S + + ++Y TG L + + + R D + LA A+ L+ K G P H W+
Sbjct: 215 SAFFLYGVALLYGATGTLTLPGIRDALAARTDDSMALAGVALLAVGLLFKVGAVPFHSWI 274
Query: 219 PDAHSNAKTYVSSILSGIAVKAPIYGLIL------LSNLGDL--SFLKPFAILSMAFGVI 270
PD + A T ++ ++ A K +G +L L L D L AIL+M G +
Sbjct: 275 PDVYQGAPTPITGFMAA-ATKVAAFGALLRVVYVALPPLHDQWRPVLWAIAILTMTVGTV 333
Query: 271 MAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG--ATL-YSLAHAMFKGGLFLGVGAII 327
A+ Q N KR+LAY +V+ +G+IL G+ N G ATL Y +A++ G F VG +
Sbjct: 334 TAVNQTNVKRMLAYSSVAHVGFILTGVIADNPAGLSATLFYLVAYSFSTMGAFAIVGLVR 393
Query: 328 DA-----RKRKDLKY---LGSRNILLIVSIAILSLAISGLGITIGGVAK 368
A + DL + LG R+ ++ V +++ LA +G+ +T G V+K
Sbjct: 394 GADGSAGSEDADLSHWAGLGQRSPIVGVMLSMFLLAFAGIPLTSGFVSK 442
>gi|11466428 subunit 4 of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
>gi|7259571|gb|AAF43872.1|AF166114_84 (AF166114) subunit
4 of NADH-plastoquinoneoxidoreductase [Mesostigma
viride]
Length = 507
Score = 102 bits (253), Expect = 7e-21
Identities = 72/277 (25%), Positives = 133/277 (47%), Gaps = 31/277 (11%)
Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALI----ASQDREAAFKYLLLSMTAS- 165
L+L M+SG +G F S+D F++ EL + Y L+ + AA K++L + S
Sbjct: 117 LMLAMYSGQLGVFASQDLLLFFLMWELELIPIYILLIIWGGKKRLYAATKFILYTALGSI 176
Query: 166 YVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLI-------LKAGIFPLHVWL 218
++LI A GM ++ N+ ++ + P+ L + I +K FP+H WL
Sbjct: 177 FILIAAFGMAFYGE---NMSFDMQILGEKEYPINLEILFYICFLIAYAVKLPAFPVHTWL 233
Query: 219 PDAHSNAKTYVSSILSGIAVKAPIYGLILL-------SNLGDLSFLKPFAILSMAFGVIM 271
PD H A +L+GI +K Y LI + +++ +L ++++ + +
Sbjct: 234 PDTHGEAHYSTCMLLAGILLKMGGYALIRINMNMLPNAHIYFAPYLAIIGVINIIYAALT 293
Query: 272 AILQFNAKRLLAYHTVSQMGYILLGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIID 328
+ Q N KR +AY ++S MG++L+G+S+ + GA L ++H + LF G D
Sbjct: 294 SFAQRNIKRKIAYSSISHMGFVLIGISSFTDIGLSGAMLQMVSHGLIGASLFFLAGTTYD 353
Query: 329 ARKRKDLKYLGS------RNILLIVSIAILSLAISGL 359
+ L+ +G + + + ++ SLA+ G+
Sbjct: 354 RTRTLILEDMGGIAKYMPKIFAMFTTCSLASLALPGM 390
>gb|AAF21812.1|AF097740_1 (AF097740) multiple resistance and pH regulation related protein A
[Bacillus firmus]
Length = 805
Score = 102 bits (252), Expect = 9e-21
Identities = 98/359 (27%), Positives = 168/359 (46%), Gaps = 47/359 (13%)
Query: 46 LLGVFLPMLLFPLSRGGVVGG---YPREIGIEVGLDWVSSTFLIAEFLVFGASSL----- 97
+L ++ L S GGVV + +GI + +V L+ L+ G +L
Sbjct: 40 VLFIYFIQYLSITSTGGVVEHTIPWVPSLGINFTV-FVDGLSLLFALLITGIGTLVILYS 98
Query: 98 --YLVKRVTNWKELSLLLLMHSG-LIGAFISKDYFNFYVFMELSAVSSYALIA-----SQ 149
YL K+ + + LLM G ++G +S + YVF EL++++S LI+ +
Sbjct: 99 IFYLSKKTESLNNFYVYLLMFMGAMLGVVLSDNLIVLYVFWELTSLASSLLISYWFHREK 158
Query: 150 DREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVE-LASEVGLRDDTPLRLAAISLIL- 207
A K +L+++ + ++ ++Y TG ++ + V L + L L A+ L+L
Sbjct: 159 STYGAQKSMLITVFGGFAMLGGFSLLYVMTGTFSIRGIIENVDLVTSSELFLPAMILVLL 218
Query: 208 ----KAGIFPLHVWLPDAHSNAKTYVSSIL-SGIAVKAPIYGLILLSNLGDLS-----FL 257
K+ FP H+WLPDA A T VS+ L S VKA IY + L+ + S L
Sbjct: 219 GAFTKSAQFPFHIWLPDA-MEAPTPVSAYLHSATMVKAGIYLVARLTPVFAGSAEWFWLL 277
Query: 258 KPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI--LLGLSTGNVY------------ 303
F ++++ +G A+ Q + K +LA+ TVSQ+G I LLGL + +Y
Sbjct: 278 TGFGVVTLLWGSTSAVRQKDLKGILAFSTVSQLGLIMTLLGLGSAAIYFGESVDPAFYSF 337
Query: 304 ---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGL 359
A + + HA FKG LF+ I +D++ LG ++ V+ + + ++ +
Sbjct: 338 AIMAAIFHLINHATFKGSLFMTACIIDHETGTRDIRKLGGLMAIMPVTFTVSLIGLASM 396
>emb|CAB89017.1| (AL353870) putative oxidoreductase. [Streptomyces coelicolor A3(2)]
Length = 579
Score = 102 bits (252), Expect = 9e-21
Identities = 76/279 (27%), Positives = 137/279 (48%), Gaps = 26/279 (9%)
Query: 113 LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVL 168
L++ +G+ F++ D N YV E+ V+S+ L+ + A Y+++S+ +S +
Sbjct: 119 LILVAGVSCTFLAGDLVNLYVGFEIMLVASFVLLTIGGTATRIRAGSTYVIISLFSSVLF 178
Query: 169 ILALGMIYFQTGYLNVELASE------VGLRDDTPLRLAAISLILKAGIFPLHVWLPDAH 222
++A+ M Y G +N+ +E G+R L + I KA +FPL WLPD++
Sbjct: 179 LVAIAMTYAVAGTVNLAQLAERLQEVPPGVRTLLEAMLLTVFAI-KAAVFPLAAWLPDSY 237
Query: 223 SNAKTYVSSILSGIAVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQ 275
A V+++ +G+ K +Y ++ LGDL L A+ SM G++ A+ Q
Sbjct: 238 PTAPAPVTAVFAGLLTKVGVYSMLRTQTLLFPGHRLGDLLMLA--ALASMVVGILGAVAQ 295
Query: 276 FNAKRLLAYHTVSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAIIDARKR 332
+ KR+L++ +S +GY++ G++ G + GA +Y H + LFL G I
Sbjct: 296 TDLKRVLSFTLISHIGYMVFGIALAGGGGISGAIVYVAHHITVQTTLFLVAGLIERRDGT 355
Query: 333 KDLKYLGS---RNILLIVSIAILSLAISGLGITIGGVAK 368
+L LG LL V + ++ ++G+ G + K
Sbjct: 356 TELTRLGGLARTAPLLAVLFFVPAMNLAGIPPLSGFIGK 394
>gi|11466208 NADH dehydrogenase subunit 4 [Naegleria gruberi]
>gi|10444243|gb|AAG17809.1|AF288092_34 (AF288092) NADH
dehydrogenase subunit 4 [Naegleria gruberi]
Length = 474
Score = 102 bits (252), Expect = 9e-21
Identities = 86/289 (29%), Positives = 140/289 (47%), Gaps = 30/289 (10%)
Query: 76 GLDWVS------STFLIAEFLVFGASSLYLVKR--VTNWKEL-SLLLLMHSGLIGAFISK 126
G+D +S STFLI L+F S Y +K+ V+ K S L L LI F +
Sbjct: 59 GIDGISIFFIYLSTFLIPLCLLF---SFYNMKQKGVSEVKMYQSFLFLTLFLLIFVFSAL 115
Query: 127 DYFNFYVFMELSAVSSYALIASQDRE-----AAFKYLLLSMTASYVLILALGMIYFQTGY 181
D FY+ E+ + + LI A++ + ++ S+++++++ +Y TG
Sbjct: 116 DILVFYIMFEIILIPFFVLIGVSSYRKRRIHASYLFFFYTLVGSFLMLISIFSLYSFTGT 175
Query: 182 LNVE--LASEVGL-RDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAV 238
N+E L ++ R++ IS +K +FP H+WLP+AH A T S +L+G+ +
Sbjct: 176 SNIEVLLNNQYSFYRENIVWLTFFISFAIKIPMFPAHIWLPEAHVEAPTEGSVLLAGVLL 235
Query: 239 KAPIYGLI-LLSNL--GDLSFLKPFAILSMAFGV----IMAILQFNAKRLLAYHTVSQMG 291
K YG + L L + P IL G+ + + Q + KR++AY +VS M
Sbjct: 236 KLGSYGFLRFLMPLFPNSTYYYSPLVILIACLGIFYTSFVTLKQIDIKRIIAYSSVSHMN 295
Query: 292 YILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKY 337
+LGL T + + G+ +AH + GGLF VG + + K LKY
Sbjct: 296 VCILGLFTFHSLGIAGSIHLMIAHGLVSGGLFFLVGMLYNRHHTKLLKY 344
>gb|AAF13041.1|AF157639_1 (AF157639) putative formate hydrogenlyase integral membrane subunit
[Desulfitobacterium dehalogenans]
Length = 637
Score = 102 bits (251), Expect = 1e-20
Identities = 93/331 (28%), Positives = 147/331 (44%), Gaps = 42/331 (12%)
Query: 46 LLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLY---LVKR 102
+LG+F FP+ G G G D +++ FL FL G +SLY +K
Sbjct: 22 ILGIFFLGWNFPV---GDPSGQWNVAGFS--FDGLTAFFLFLLFLGQGVASLYGLGYMKE 76
Query: 103 VTNWKEL---SLLLLMHSG-LIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREA 153
K L SL + G + G + + F F EL ++ S+ L+ + +R+A
Sbjct: 77 YEGKKSLISFSLSWVAFLGSMAGVLLVNNGFYFLFLWELMSLFSFFLVVYEHEETSNRKA 136
Query: 154 AFKYLLLSMTASYVLILALGMIYFQTGYLN----VELASEVGLRDDTPLRLAAISLILKA 209
AF Y +++ + LI A+ +Y +TG +ASE+ + KA
Sbjct: 137 AFIYFVMTHVGTVFLIAAVLYLYSKTGSFLYGDWAAIASELSPGEKIVSFYVFGGFGTKA 196
Query: 210 GIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILL-------SNLGDLSFLKPFAI 262
G+ P H+WLP AH A + VS+++SG+ VK +Y ++ L L + +
Sbjct: 197 GLVPFHIWLPYAHPVAPSPVSALMSGVMVKIALYMIMRLVWLTLAPMELWWGGLMLALGV 256
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYS------------- 309
LS G++ A ++ N KRLLAY TV MG + + L T + Y+
Sbjct: 257 LSAFIGILYACVERNVKRLLAYSTVENMGILTMALGTAMIAQTLGYTELVVLALAAFFWH 316
Query: 310 -LAHAMFKGGLFLGVGAIIDARKRKDLKYLG 339
+ H +FK +F+ G II A K L +G
Sbjct: 317 GVHHLLFKSNMFMAAGNIIQATHTKKLDQMG 347
>pir||G81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N NMA2228
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7380847|emb|CAB85439.1| (AL162758) NADH
dehydrogenase chain N [Neisseria meningitidis Z2491]
Length = 481
Score = 101 bits (250), Expect = 2e-20
Identities = 97/318 (30%), Positives = 156/318 (48%), Gaps = 33/318 (10%)
Query: 109 LSLLLLMHSGLIGAFISKDYF-NFYVFMELSAVSSYALIASQD-----REAAFKYLLLSM 162
LSL L+ G++ +S +F Y+ +EL +++ YALIA + EAA KY +L
Sbjct: 111 LSLFALLGMGVM---VSAGHFLTAYIGLELLSLALYALIALRRDSGFAAEAALKYFVLGA 167
Query: 163 TASYVLILALGMIYFQTGYLNVE--LASEVGLR-DDTPLRLAAISLIL----KAGIFPLH 215
AS +L+ + M+Y TG L LAS ++ L+L + +++ K G P H
Sbjct: 168 LASGLLLYGISMVYGATGSLEFAGVLASSFNEEANEWLLKLGLVFIVVAVAFKLGAVPFH 227
Query: 216 VWLPDAHSNAKTYVSSILSGIAVK--APIYGL-ILLSNLGDL--SFLKPFAIL---SMAF 267
+W+PD + A T V++++ G A K A ++ IL++ LG + + FA+L S+
Sbjct: 228 MWVPDVYHGAPTSVTALV-GTAPKIAAVVFAFRILVTGLGTVHHDWSLMFALLAAASLLV 286
Query: 268 GVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNV------YGATLYSLAHAMFKGGLFL 321
G + AI+Q N KR+LAY TVS MG+ILL G V Y A Y+L A G L +
Sbjct: 287 GNLAAIMQTNIKRMLAYSTVSHMGFILLAFMAGAVGFAAGLYYAITYALMAAAGFGVLMV 346
Query: 322 GVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAK--SYLATTEKAII 379
+ DL L + L + ++ +++G+ +G AK +A ++ +
Sbjct: 347 LSDGDNECENISDLAGLNQHRVWLAFLMLLVMFSMAGIPPLMGFYAKFGVIMALLKQGYV 406
Query: 380 YAVSFGTAFSFSKLNYYL 397
+ F S YYL
Sbjct: 407 WLSVFAVVMSLIGAFYYL 424
>gb|AAD52918.1|AF152244_5 (AF152244) NADH dehydrogenase subunit 4 [Acropora tenuis]
Length = 475
Score = 101 bits (250), Expect = 2e-20
Identities = 84/308 (27%), Positives = 141/308 (45%), Gaps = 21/308 (6%)
Query: 77 LDWVSSTFLIAEFLVFGASSLYLVKRVTN-WKELSL-LLLMHSGLIGAFISKDYFNFYVF 134
LD VS F + L+ L K + + +KE L LL + + L+G F+ D FY+
Sbjct: 70 LDGVSLFFFVLTALLIPICILISWKSIKHLFKEFLLCLLFLEALLVGVFLVLDLLLFYLL 129
Query: 135 MELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASE 189
E + + LI + A++ + + S ++L L IY TG + ++
Sbjct: 130 FEGILIPMFLLIGVWGSREEKVRASYYFFFYTFAGSVFMLLGLFQIYSVTGTTDYQILLN 189
Query: 190 VGLRDDTPLRLAA---ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI 246
+ L T + A +SL +K P H+WLP AH A S IL+GI +K YG +
Sbjct: 190 IKLPVTTQKWVLAGIFLSLAVKIPQIPFHIWLPQAHVEAPVSGSVILAGILLKLGGYGFL 249
Query: 247 LLS---NLGDLSFLKPFAIL----SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLST 299
S + P I+ ++ +G ++ Q + KRL+AY +V+ MG + LGL T
Sbjct: 250 RFSWPILPAASEYFAPLIIMLGVVAIIYGGLLTCRQVDFKRLIAYSSVAHMGLVPLGLFT 309
Query: 300 GNVYG---ATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAILS-LA 355
+ G A LAH LF+ + + + + +KY + + V + I+ L+
Sbjct: 310 HTIEGLVAAVFMMLAHGFVSSALFIAITYLYERHHTRLIKYYRGVTLTMPVFVCIMMVLS 369
Query: 356 ISGLGITI 363
+S +GI +
Sbjct: 370 LSNMGIPL 377
>pir||S38323 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain N -
Escherichia coli (strain AN387)
Length = 476
Score = 101 bits (249), Expect = 2e-20
Identities = 105/367 (28%), Positives = 171/367 (45%), Gaps = 36/367 (9%)
Query: 64 VGGYPR-EIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGA 122
+GG PR I I + +D +S ++ L+ + L K + ++ L LM L A
Sbjct: 54 LGGIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLMWILLANA 113
Query: 123 FISKDYFNFY--VFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIYFQTG 180
I + F + + L + YA + EA+ KY +LS AS L+ + ++Y Q+G
Sbjct: 114 TIWRSLFLGIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQSG 173
Query: 181 YLN-VELASEVG---LRDDTPLR---LAAISLILKAGIFPLHVWLPDAHSNAKTYVSSIL 233
L+ V L +G L D L L + L K + P H+W PD + A VS+ L
Sbjct: 174 DLSFVALGKNLGDGMLNDALLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTFL 233
Query: 234 ---SGIAVKAPIYGLILLSNLGDLSFLK----PFAILSMAFGVIMAILQFNAKRLLAYHT 286
S IA+ + L L + +GD ++ + S+ FG +MA+ Q N KRLL Y +
Sbjct: 234 ATASKIAIFGVVMRLFLYAPVGDSEQVRRGAGDYRFASIIFGNLMALSQTNIKRLLGYSS 293
Query: 287 VSQMGYI---LLGLSTGNV-YGATLYSLAHAMFKGGLFLGVGAII-------DARKRKDL 335
+S +GY+ L+ L TG + A LA +F GV +++ DA
Sbjct: 294 ISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSY 353
Query: 336 KYLGSRNILLIVSIAILSLAISGLGITIGGVAKSY-LATTEKA----IIYAVSFGTAFSF 390
+ L +L + ++ L+++G+ +T+G + K Y LA +A ++ AV G+A
Sbjct: 354 RGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAIG- 412
Query: 391 SKLNYYL 397
L YYL
Sbjct: 413 --LYYYL 417
>pir||S43882 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - garden
lettuce mitochondrion >gi|976350|gb|AAA75278.1| (L12246)
NADH dehydrogenase subunit 4 [Lactuca sativa]
Length = 495
Score = 101 bits (249), Expect = 2e-20
Identities = 93/352 (26%), Positives = 164/352 (46%), Gaps = 43/352 (12%)
Query: 75 VGLDWVS------STFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDY 128
+G+D +S +TFLI ++ G S + R + ++ L+ +I F D
Sbjct: 84 LGIDGISLFFVILTTFLIPICILVGWSGM----RSYGKEYITASLIREFLMIAVFRMLDP 139
Query: 129 FNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGY-- 181
FYV E + + +I S+ R+ AA++ L ++ S ++LA+ +I FQTG
Sbjct: 140 LLFYVLPESVLIPMFIIIGVWGSRQRKIKAAYQLFLYTLLGSVFMLLAILLILFQTGTTD 199
Query: 182 LNVELASEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
L + L +E R L +A S +K + P+H+WLP+AH A T S IL+GI +K
Sbjct: 200 LQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKL 259
Query: 241 PIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI 293
YG + S L F+ + +++ + + + Q + K+++AY +V+ M +
Sbjct: 260 GTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLV 319
Query: 294 LLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS--------RN 342
+G+ + N+ G+ L L+H + LFL VG + K + ++Y G
Sbjct: 320 TIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYVRHKTRLVRYYGGLVSTMPNFST 379
Query: 343 ILLIVSIAILSLA-----ISGLGITIGGVAKSYLATTEKAIIYAVSFGTAFS 389
I ++A +SL I I +G ++ L T A+ + G A+S
Sbjct: 380 IFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAAL--GMILGAAYS 429
>gi|9695383 NADH dehydrogenase subunit 4 [Phytophthora infestans]
>gi|6692636|gb|AAF24779.1|U17009_11 (U17009) NADH
dehydrogenase subunit 4 [Phytophthora infestans]
Length = 491
Score = 101 bits (249), Expect = 2e-20
Identities = 78/312 (25%), Positives = 151/312 (48%), Gaps = 21/312 (6%)
Query: 71 IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVT-NWKELSLL-LLMHSGLIGAFISKDY 128
I +GLD +S F+I + L + +T N KE +L ++ LI +F D
Sbjct: 73 INFYLGLDGISLFFIILTTFLIPICMLISYEIITKNIKEYFILYFILEFCLIISFSVLDI 132
Query: 129 FNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGYLN 183
FY+F E + + +I S++R+ A++ + + ++ S + +A+ ++ G +
Sbjct: 133 LIFYIFFESVLIPMFLIIGIWGSRERKIKASYLFFMYTLAGSLFMFIAIIHLFLTVGTTD 192
Query: 184 VELA--SEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
++ S + LA +S +K + P HVWLP+AH A T S +L+GI +K
Sbjct: 193 YQILYYSNFNFSYEKLYFLAFFLSFAVKVPMLPFHVWLPEAHVEAPTAGSVLLAGILLKL 252
Query: 241 PIYGLILL-------SNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI 293
YG+I + L ++ ++S+ + + AI Q + KR++AY +V+ M +I
Sbjct: 253 GSYGMIRFLVPLFPKATLYFTPYILVLCLISVIYASLTAIRQTDLKRIIAYASVAHMNFI 312
Query: 294 LLG---LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS-RNILLIVSI 349
+LG L+ + G+ + ++H + GLF +G + D + + Y G + + + I
Sbjct: 313 ILGIFSLTIQGLEGSIIQMISHGLVSSGLFFSIGCLYDRYHTRFINYYGGLAHTMPLFCI 372
Query: 350 AILSLAISGLGI 361
A+ ++ + I
Sbjct: 373 ALFIYVLANMSI 384
>pir||S38992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - maize
chloroplast
Length = 510
Score = 101 bits (248), Expect = 3e-20
Identities = 85/324 (26%), Positives = 144/324 (44%), Gaps = 42/324 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
LL ++ + L G F+ + D +V +E ++ SY L R EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGA 189
Query: 164 ASYVLILALGMIY-----------FQTGYLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
+S +L+ +Y G +N ++ + G+ L + L K +
Sbjct: 190 SSSILVYGFSWLYGLSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGLGFKLSLA 247
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
P H W PD + + T V + LS V + + L L + + D+ F L+ AI
Sbjct: 248 PFHQWTPDVYEGSPTPVVAFLS---VTSKVAALALATRILDIPFYFSSNEWHLLLEILAI 304
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
LSM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ + + +F + LG
Sbjct: 305 LSMILGNLLAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364
Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
A I +D L +++ L +S+A+ L++ GL G K YL
Sbjct: 365 TFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCG 424
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVLSIYYYL 448
>emb|CAC12088.1| (AL445066) NADH dehydrogenase, chain N related protein
[Thermoplasma acidophilum]
Length = 469
Score = 101 bits (248), Expect = 3e-20
Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 40/340 (11%)
Query: 67 YPREIGIEVGL--DWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFI 124
Y GI V ++ + LI+ + + YL KR E+ L+ S L F+
Sbjct: 53 YSSAYGITVNKFSEYFAIVLLISALFISLPVAKYLGKR----SEIFYSALIFSALGMIFV 108
Query: 125 SKDYFNFYVFMELSAVSSYALIAS------QDREAAFKYLLLSMTASYVLILALGMIYFQ 178
++ + F+ +VS I S ++ EA KY A+ +IL + +F
Sbjct: 109 AETWNLIIAFVAFESVSIMTYIMSAYGGKQRNLEATVKYFFTGTIATTFIILGIAFYFFS 168
Query: 179 TGYLNVELASEVGLRDDTPLRLAAISLIL----KAGIFPLHVWLPDAHSNAKTYVSSILS 234
G + ++ + D + LA + L++ K IFP+H W DA+ + VS+ LS
Sbjct: 169 VGTFTLSTSTTMVSADKPTMLLALLFLLIGFGFKLAIFPMHQWAIDAYDGTENDVSAFLS 228
Query: 235 GIAVKAPIYGLIL-LSNLGDLSFLKP-------FAILSMAFGVIMAILQFNAKRLLAYHT 286
K + ++L + +G S+ P ++L+M + + A+ Q N KRLLAY +
Sbjct: 229 -TGTKIMAFVIVLKIFLVGFSSYTAPVYFFFVILSVLTMTYANVAALSQNNVKRLLAYSS 287
Query: 287 VSQMGYILLGLST------GN--------VYGATLYSLAHAMFKGGLFLGVGAIIDARKR 332
V+Q GY++L L+ GN + YSL + KGG FL + +
Sbjct: 288 VAQAGYLILVLAVVSYVGIGNKPSVVDLAIASGMFYSLVYIFMKGGSFLAMNMVKQENVT 347
Query: 333 KD-LKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL 371
D + LG ++ + S +IL L+++G+ +T G +AK +L
Sbjct: 348 FDAISGLGKKSPYVAASFSILLLSLAGIPLTGGFLAKYFL 387
>pir||S08621 probable hydrogenase 3 protein 3 - Escherichia coli
>gi|41682|emb|CAA35548.1| (X17506) hycC [Escherichia
coli] >gi|1093496|prf||2104213C hycC gene [Escherichia
coli]
Length = 608
Score = 100 bits (247), Expect = 3e-20
Identities = 75/264 (28%), Positives = 132/264 (49%), Gaps = 28/264 (10%)
Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALG 173
++ + + A I+ + F V E+ A+ + + S +E + L + +L +A
Sbjct: 113 MLMAAAVCAVIASNLGMFVVMAEIMALCA-VFLTSNSKEGKL-WFALGRLGTLLLAIACW 170
Query: 174 MIYFQTGYLNVELAS----EVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYV 229
+++ + G L++ L ++ L D L L I L AGI PLH W+P AH+NA T
Sbjct: 171 LLWQRYGTLDLRLLDMRMQQLPLGSDIWL-LGVIGFGLLAGIIPLHGWVPQAHANASTPA 229
Query: 230 SSILSGIAVKAPIYGLILLSNLGDLS------FLKPFAILSMAFGVIMAILQFNAKRLLA 283
+++ S + +K + G++ LS LG + L +++ G + A+++ N +RLLA
Sbjct: 230 AALFSTVVMKIGLLGILTLSLLGGNAPLWWGIALLVLGMITAFVGGLYALVEHNIQRLLA 289
Query: 284 YHTVSQMGYILLGLSTG--------------NVYGATLYSLAHAMFKGGLFLGVGAIIDA 329
YHT+ +G ILLGL G + G + L H++FK LFLG G++
Sbjct: 290 YHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFR 349
Query: 330 RKRKDLKYLGS-RNILLIVSIAIL 352
+D++ LG + ++SIA+L
Sbjct: 350 TGHRDIEKLGGIGKKMPVISIAML 373
>sp|P32421|NU4C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4 >gi|282215|pir||S28891
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Synechocystis sp. (strain PCC 6803)
>gi|47602|emb|CAA46289.1| (X65170) NADH dehydrogenase
subunit D [Synechocystis PCC6803]
>gi|1001415|dbj|BAA10037.1| (D63999) NADH dehydrogenase
subunit 4 [Synechocystis sp.]
Length = 525
Score = 100 bits (247), Expect = 3e-20
Identities = 81/276 (29%), Positives = 133/276 (47%), Gaps = 29/276 (10%)
Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASY 166
L+LLM+ G I F +D F++ EL V Y +++ + AA K++L + S
Sbjct: 117 LMLLMYGGQIAVFAVQDILLFFLVWELELVPVYLILSIWGGKKRLYAATKFILYTAGGSL 176
Query: 167 VLILALGMIYFQTGYLNVELASEVGLRD---DTPLRLAAISLI---LKAGIFPLHVWLPD 220
++LA G+ G +N S + +D + L L A LI +K IFPLH WLPD
Sbjct: 177 FILLA-GLTLAFYGDVNTFDMSAIAAKDIPVNLQLLLYAGFLIAYGVKLPIFPLHTWLPD 235
Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL--------SFLKPFAILSMAFGVIMA 272
AH A +L+GI +K Y L+ + N+G L L ++++ + +
Sbjct: 236 AHGEATAPAHMLLAGILLKMGGYALLRM-NVGMLPDAHAVFAPVLVILGVVNIIYAAFTS 294
Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIIDA 329
Q N KR +AY ++S MG++L+GL++ + GA L ++H + LF VGA D
Sbjct: 295 FAQRNLKRKIAYSSISHMGFVLIGLASFTDLGMSGAMLQMISHGLIGASLFFMVGATYDR 354
Query: 330 RKRKDLKYLG------SRNILLIVSIAILSLAISGL 359
L +G + + + ++ SLA+ G+
Sbjct: 355 THTLMLDEMGGIGQKMKKGFAMWTACSLASLALPGM 390
>pir||DENTN4 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - common
tobacco chloroplast >gi|225255|prf||1211235CP NADH
dehydrogenase 4-like ORF 509B [Nicotiana tabacum]
Length = 509
Score = 100 bits (247), Expect = 3e-20
Identities = 93/341 (27%), Positives = 154/341 (44%), Gaps = 46/341 (13%)
Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASY 166
L+L M+SG IG+F S+D F++ EL + Y L+ + +A K++L + S
Sbjct: 126 LMLAMYSGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSATKFILYTAGGSV 185
Query: 167 VLILA-LGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLI-------LKAGIFPLHVWL 218
L++ LG+ + G L E + P+ L I I +K+ I PLH WL
Sbjct: 186 FLLMGVLGLALY--GSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWL 243
Query: 219 PDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL----SFLKPFAILSMAFGVIMAIL 274
PD H A +L+GI +K YGLI + N+ L S P+ ++ +I A L
Sbjct: 244 PDTHGEAHYSTCMLLAGILLKMGAYGLIRI-NMELLPHAHSIFSPWLMIIGTIQIIYAAL 302
Query: 275 ----QFNAKRLLAYHTVSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAII 327
Q N K+ +AY +VS MG+I++G+S+ + GA L ++H LF G
Sbjct: 303 TSLGQRNLKKRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTY 362
Query: 328 DARKRKDLKYLGS------RNILLIVSIAILSLAISGLG------ITIGGV--AKSYLAT 373
D + L +G + + S ++ SLA+ G+ I G+ + YL
Sbjct: 363 DRIRLVYLDEMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLI 422
Query: 374 TEKAIIYAVSFGT------AFSFSKLNYYLWKGYGNEPTNF 408
+ I + ++ G + S S+ +Y +K + +F
Sbjct: 423 PKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNAPKDSF 463
>gi|11467057 NADH dehydrogenase, subunit 4 [Acanthamoeba castellanii]
>gi|3122488|sp|Q37375|NU4M_ACACA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4 >gi|1078743|pir||S53834 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Acanthamoeba castellanii mitochondrion
>gi|562038|gb|AAD11826.1| (U12386) NADH dehydrogenase,
subunit 4 [Acanthamoeba castellanii]
Length = 497
Score = 100 bits (247), Expect = 3e-20
Identities = 78/312 (25%), Positives = 140/312 (44%), Gaps = 33/312 (10%)
Query: 75 VGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSL--------LLLMHSGLIGAFISK 126
+G+D +S FL+ F + L +W + L+ + L F
Sbjct: 89 IGMDNISLLFLLLTFFLTPICILI------SWNSIKYRYNSFIICLIFITFILFNIFCVL 142
Query: 127 DYFNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGY 181
D FY+F E + + LI S+ R+ A ++ ++ S +++L + +IY
Sbjct: 143 DLVFFYIFFESILIPMFILIGVWGSRQRKIHAVYQLFFYTLLGSLLMLLGILVIYSHIQT 202
Query: 182 LNVELASEVGLRDDTPLRLAA---ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAV 238
++ + L L A + +K +FP H+WLP+AH A T S IL+G+ +
Sbjct: 203 TDIRVLYNTNFSFYRQLILWASFFFAFCVKVPLFPFHIWLPEAHVEAPTVGSVILAGVLL 262
Query: 239 KAPIYGLILL-------SNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMG 291
K YGL+ + L + +L + + I Q + K+++AY +VS M
Sbjct: 263 KLGTYGLLRFVIPIFCDATYFFLPLVYTLCLLGIIYTCCSTIRQVDLKKVIAYASVSHMS 322
Query: 292 YILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYL-GSRNILLIV 347
+++LGL T N+ G+ L+H + GLF +G + D K + L+Y G + + I
Sbjct: 323 FVILGLFTSNIQGIGGSVFLMLSHGIVSSGLFFCIGCVYDRYKTRILRYYSGLVSTMPIF 382
Query: 348 SIAILSLAISGL 359
S+ + L +S +
Sbjct: 383 SLCLFILILSNI 394
>sp|P06262|NU4C_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4, CHLOROPLAST
Length = 500
Score = 100 bits (247), Expect = 3e-20
Identities = 93/341 (27%), Positives = 154/341 (44%), Gaps = 46/341 (13%)
Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASY 166
L+L M+SG IG+F S+D F++ EL + Y L+ + +A K++L + S
Sbjct: 117 LMLAMYSGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSATKFILYTAGGSV 176
Query: 167 VLILA-LGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLI-------LKAGIFPLHVWL 218
L++ LG+ + G L E + P+ L I I +K+ I PLH WL
Sbjct: 177 FLLMGVLGLALY--GSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWL 234
Query: 219 PDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL----SFLKPFAILSMAFGVIMAIL 274
PD H A +L+GI +K YGLI + N+ L S P+ ++ +I A L
Sbjct: 235 PDTHGEAHYSTCMLLAGILLKMGAYGLIRI-NMELLPHAHSIFSPWLMIIGTIQIIYAAL 293
Query: 275 ----QFNAKRLLAYHTVSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAII 327
Q N K+ +AY +VS MG+I++G+S+ + GA L ++H LF G
Sbjct: 294 TSLGQRNLKKRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTY 353
Query: 328 DARKRKDLKYLGS------RNILLIVSIAILSLAISGLG------ITIGGV--AKSYLAT 373
D + L +G + + S ++ SLA+ G+ I G+ + YL
Sbjct: 354 DRIRLVYLDEMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLI 413
Query: 374 TEKAIIYAVSFGT------AFSFSKLNYYLWKGYGNEPTNF 408
+ I + ++ G + S S+ +Y +K + +F
Sbjct: 414 PKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNAPKDSF 454
>gi|11466015 NADH dehydrogenase ND4 subunit [Nicotiana tabacum]
>gi|2924279|emb|CAA77432.1| (Z00044) NADH dehydrogenase
ND4 subunit [Nicotiana tabacum]
Length = 500
Score = 100 bits (247), Expect = 3e-20
Identities = 93/341 (27%), Positives = 154/341 (44%), Gaps = 46/341 (13%)
Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASY 166
L+L M+SG IG+F S+D F++ EL + Y L+ + +A K++L + S
Sbjct: 117 LMLAMYSGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSATKFILYTAGGSV 176
Query: 167 VLILA-LGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLI-------LKAGIFPLHVWL 218
L++ LG+ + G L E + P+ L I I +K+ I PLH WL
Sbjct: 177 FLLMGVLGLALY--GSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWL 234
Query: 219 PDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL----SFLKPFAILSMAFGVIMAIL 274
PD H A +L+GI +K YGLI + N+ L S P+ ++ +I A L
Sbjct: 235 PDTHGEAHYSTCMLLAGILLKMGAYGLIRI-NMELLPHAHSIFSPWLMIIGTIQIIYAAL 293
Query: 275 ----QFNAKRLLAYHTVSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAII 327
Q N K+ +AY +VS MG+I++G+S+ + GA L ++H LF G
Sbjct: 294 TSLGQRNLKKRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTY 353
Query: 328 DARKRKDLKYLGS------RNILLIVSIAILSLAISGLG------ITIGGV--AKSYLAT 373
D + L +G + + S ++ SLA+ G+ I G+ + YL
Sbjct: 354 DRIRLVYLDEMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLI 413
Query: 374 TEKAIIYAVSFGT------AFSFSKLNYYLWKGYGNEPTNF 408
+ I + ++ G + S S+ +Y +K + +F
Sbjct: 414 PKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNAPKDSF 454
>pir||F72619 probable NADH dehydrogenase (ubiquinone) chain 13 APE1415 -
Aeropyrum pernix (strain K1) >gi|5105098|dbj|BAA80412.1|
(AP000061) 513aa long hypothetical NADH dehydrogenase
(ubiquinone) chain 13 [Aeropyrum pernix]
Length = 513
Score = 100 bits (247), Expect = 3e-20
Identities = 105/355 (29%), Positives = 163/355 (45%), Gaps = 80/355 (22%)
Query: 109 LSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTA 164
L L + S ++G S ++ F +F+ELS +SS+ LIA R A Y + + A
Sbjct: 125 LILYSIFSSTMLGIAYSLNFLLFIIFLELSLLSSFLLIAFYGYGDRRRIALLYFVWTHIA 184
Query: 165 SYVLILALGMIYFQTGYLNVELASEVGLR---------DDTPLRLAAISLIL----KAGI 211
+ +L G +Y+ ++A+ G R +A +SL+L K +
Sbjct: 185 GALALL--GGLYYVIKTGTFDVATVEGGRIVYFSSPADRSVYAAIAGVSLLLGMLVKMAV 242
Query: 212 FPLHVWLPDAHSNAKTYVSSILS---------GIAVKAPIYGLILLSNLGDLSFLKPFAI 262
F +H+WLP AH+ A T +S++LS GIA A + LL +L L L A
Sbjct: 243 FGVHMWLPYAHAEAPTPISALLSPNLIGLGGYGIARFAAAFYPWLLEDLKPL--LVGLAF 300
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGL 319
+++ +G ++A+ Q + KRLLAY ++SQMGY+LL LST + G A+L L HA+ K L
Sbjct: 301 VTIVYGGLVALSQLDFKRLLAYSSISQMGYMLLALSTLHPLGFAAASLIFLGHAVGKAVL 360
Query: 320 FLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAII 379
F+ G I G RNI +GG+A+ Y T A+I
Sbjct: 361 FMTAGVFITEAH-------GLRNI-----------------ARMGGLARLYPLTAAAALI 396
Query: 380 ---YAVSFGTAFSF--------SKLNYYLWKGYGNEPTNFSILPSLTLGVLTVLV 423
+ AF F S LNY GY + +++LG+L +++
Sbjct: 397 GFLHLAGIPPAFGFWGELYLTLSVLNY---PGYSD---------AVSLGLLAIIL 439
>gb|AAK40663.1| NADH dehydrogenase subunit L (NuoL) [Sulfolobus solfataricus]
Length = 1148
Score = 100 bits (246), Expect = 4e-20
Identities = 95/368 (25%), Positives = 173/368 (46%), Gaps = 45/368 (12%)
Query: 47 LGVFLPMLLFP-LSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVK---- 101
+ + +P L+F + V Y + GI V + F+I ++ S++Y ++
Sbjct: 56 IAINIPFLVFRGIFENIFVSKYVGDFGIVVNN--FNYPFIITIIIITLLSAIYSLRYMEH 113
Query: 102 -----RVTNWK-ELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA----SQDR 151
R ++W +L L ++ +S + Y+F+E+S +SS+ LIA R
Sbjct: 114 KFDEERKSSWGLYYALYTLFALSMLYTVLSTNLLELYIFLEISLISSFLLIALYGYGDRR 173
Query: 152 EAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDT------PLRLAAISL 205
+ Y + + + +L+ ++ +I TG +N+ + + T +A + +
Sbjct: 174 RISLMYFIWTHIGTILLLASIIVIGLSTGSMNIYVDAYTFANYSTISYGILVFIIAVVGM 233
Query: 206 ILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNL-GDLSFLKP----F 260
+K ++WLP AH A T +S +LS V I+ +I+ L +SFL P +
Sbjct: 234 FVKGAQAGFNIWLPYAHGEAPTPISVLLSPNMVGLGIFVVIIYYYLFPTMSFLAPIFIAW 293
Query: 261 AILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG--------------NVYGAT 306
AI++M +G I A+ Q + KR LAY +VSQMGY+LLG S + +
Sbjct: 294 AIITMIYGGINALAQKDFKRFLAYSSVSQMGYMLLGASIAFLSGLSNSIISLPIGILASI 353
Query: 307 LYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNIL--LIVSIAIL-SLAISGLGITI 363
L ++H K LF+ GA I ++++ LG + L ++A + +L + GL TI
Sbjct: 354 LIYVSHGFGKAILFMSAGASITELNERNIEKLGGLYLSSPLHSTLAFIGALNLLGLPPTI 413
Query: 364 GGVAKSYL 371
G ++++ L
Sbjct: 414 GLISEALL 421
>gi|11467595 NADH dehydrogenase, subunit 4 [Allomyces macrogynus]
>gi|2147762|pir||S63659 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 4 - Allomyces macrogynus
mitochondrion >gi|1236425|gb|AAC49242.1| (U41288) NADH
dehydrogenase, subunit 4 [Allomyces macrogynus]
Length = 482
Score = 100 bits (246), Expect = 4e-20
Identities = 85/316 (26%), Positives = 149/316 (46%), Gaps = 25/316 (7%)
Query: 75 VGLDWVSSTFLI-AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYV 133
+G+D +S F+I FL + L LL++ S LI F+ D FY+
Sbjct: 76 IGVDGISLFFVILTSFLTIPIILTPPYNGESPTAYLITLLILESMLIAVFVVLDLLLFYI 135
Query: 134 FMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTG-----YLN 183
E + + +I S+ R+ AA+ + L ++ S ++L + +IY+QTG YL
Sbjct: 136 CFETVLIPMFLIIGIWGSKVRKIMAAYHFFLYTLLGSLFMLLGIIVIYYQTGTTDYQYLL 195
Query: 184 VELAS-EVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAP 241
L + E L + L L +S +K +FP++ WLP AHS A T S IL+GI +K
Sbjct: 196 AVLGTAESSLTRENLLWLTFFLSFAVKVPMFPVYGWLPLAHSEAPTGGSMILAGILLKLS 255
Query: 242 IYGLI-----LLSNLGD--LSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYIL 294
YG + L N + F+ A++ + + + Q + K ++AY ++S M ++
Sbjct: 256 GYGFLRYSIPLFPNASNYFTPFVLTLAVIGILYSIFACFRQTDLKSVIAYSSISHMNIVI 315
Query: 295 LGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYL-GSRNILLIVSIA 350
+ + N+ GA ++H + LF VGA+ D + L Y G ++ + S+
Sbjct: 316 AAIFSDNIIGIEGALFMMISHGIVSSALFFCVGALYDRTGTRILAYYRGLTMVMPLFSLC 375
Query: 351 ILSLAISGLGITIGGV 366
L ++ + + GG+
Sbjct: 376 FFILILNNMAVP-GGI 390
>emb|CAB51628.2| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 479
Score = 99.8 bits (245), Expect = 6e-20
Identities = 91/347 (26%), Positives = 152/347 (43%), Gaps = 39/347 (11%)
Query: 84 FLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISK---DYFNFYVFMELSAV 140
F +A L F S Y E +LLL L+G I D + YV +EL +
Sbjct: 84 FYLATILTFFLSRKYAEIEGIGRSEYYVLLLF--ALVGMMIMASAIDLLSIYVGLELMVL 141
Query: 141 SSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEV--GLR 193
+Y L + EAA KY++L ++ + + + +IY TG ++ +E G
Sbjct: 142 CTYVLTGFLRKERRSNEAALKYVILGAVSTAIFLYGVSLIYGLTGTTQLDRMAEAVSGGP 201
Query: 194 DDTPLRLAAI----SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLS 249
D L LA + L+ K G P H+W+PD + A T +++ +S +A KA + +IL
Sbjct: 202 LDPALLLAVVFIVAGLVFKIGAVPFHMWVPDVYEGAPTTITAFMS-VAPKAAGFAVILRV 260
Query: 250 NLGDLS-------FLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG-- 300
L L + A+ +MA G +A++Q N KRLLAY +++ G+ + G+ G
Sbjct: 261 FLNPLVEASNAWIIVAAIAVATMALGSFVALVQDNFKRLLAYSSIAHAGFAIFGVVAGGQ 320
Query: 301 -NVYGATLYSLAHAMFKGGLFLGVGAIIDARKR-------KDLKYLGSRNILLIVSIAIL 352
+ LY L + G+F GA+I R +D + L + + +
Sbjct: 321 DGIASVMLYLLIYTFMNLGIF---GAVIMMRNGDFSGEVIEDYAGFAKFHPGLALLMLLY 377
Query: 353 SLAISGLGITIGGVAKSY--LATTEKAIIYAVSFGTAFSFSKLNYYL 397
+++G+ T G AK Y +A E+ + S +Y+
Sbjct: 378 LFSLAGIPPTAGFFAKFYVLVALVERGFVALAVIAVLLSVVSAYFYI 424
>sp|P29925|NQOD_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 13 (NADH DEHYDROGENASE 1,
CHAIN 13) (NDH-1, CHAIN 13) >gi|478255|pir||I45456 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Paracoccus denitrificans >gi|150615|gb|AAA25599.1|
(L02354) NADH dehydrogenase [Paracoccus denitrificans]
Length = 513
Score = 99.5 bits (244), Expect = 8e-20
Identities = 87/370 (23%), Positives = 173/370 (46%), Gaps = 38/370 (10%)
Query: 5 IMVISPVIFSLLIYIFGTFRIEGTFR-ARFRLPLTYEVKALYLLGVFLPMLLFPLSRG-G 62
I+ P++ ++++ +F + E R A++ LT A +++ +F+ P + G
Sbjct: 7 IITFLPIVAAIIMALFLRGQDEAAARNAKWLALLT--TTATFVISLFVLFRFDPANTGFQ 64
Query: 63 VVGGYPREIGI--EVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGL- 119
V + +G+ ++G+D +S F++ + + L + KE + L+ GL
Sbjct: 65 FVEDHAWIMGVCYKMGVDGISVLFVLLTTFMMPLTILSTWQVQDKVKEYMIAFLVLEGLM 124
Query: 120 IGAFISKDYFNFYVFMELSAVSSYALIA---SQDR-EAAFKYLLLSMTASYVLILALGMI 175
IG F + D FY+F E + + +I +DR A+FK+ L + S ++++A+ +
Sbjct: 125 IGVFTALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMIAM 184
Query: 176 YFQTGYLNVELASEVGLRDDTPLRLAAISLI----------------LKAGIFPLHVWLP 219
Y G ++ + RL ++++ +K ++P+H WLP
Sbjct: 185 YRMAGTTDIPTLLTFDFPSEN-FRLLGMTVVGGMQMLLFLAFFASFAVKMPMWPVHTWLP 243
Query: 220 DAHSNAKTYVSSILSGIAVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMA 272
DAH A T S +L+ + +K YG + S + ++ + +++ + ++A
Sbjct: 244 DAHVQAPTAGSVLLAAVLLKMGGYGFLRFSLPMFPVASGVAQPYVFWLSAIAIVYTSLVA 303
Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDA 329
+ Q + K+++AY +V+ MGY+ +G+ N V GA L+H G LFL VG I D
Sbjct: 304 LAQSDMKKVIAYSSVAHMGYVTMGVFAANQIGVDGAIFQMLSHGFISGALFLCVGVIYDR 363
Query: 330 RKRKDLKYLG 339
+++ G
Sbjct: 364 MHTREIDAYG 373
>pir||S65076 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - barley
chloroplast
Length = 510
Score = 99.5 bits (244), Expect = 8e-20
Identities = 84/324 (25%), Positives = 143/324 (43%), Gaps = 42/324 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
LL ++ + L G F+ + D +V +E ++ SY L R EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGA 189
Query: 164 ASYVLILALGMIY-----------FQTGYLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
+S +L+ +Y G +N ++ + G+ L + L K +
Sbjct: 190 SSSILVYGFSWLYGLSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGLGFKLSLA 247
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
P H W PD + + T V + LS V + + + L + + D+ F L+ AI
Sbjct: 248 PFHQWTPDVYEGSPTPVVAFLS---VTSKVAAIALATRILDIPFYFSSNEWHLLLEILAI 304
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
LSM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ + + +F + LG
Sbjct: 305 LSMILGNLLAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364
Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
A I +D L ++ L +S+A+ L++ GL G K YL
Sbjct: 365 TFACIVLFGLRTGTDNIRDYAGLYMKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCG 424
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVLSIYYYL 448
>gb|AAA69233.1| (U29579) formate hydrogenlyase subunit 3 [Escherichia coli]
Length = 608
Score = 99.1 bits (243), Expect = 1e-19
Identities = 74/264 (28%), Positives = 131/264 (49%), Gaps = 28/264 (10%)
Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALG 173
++ + + A I+ + F V E+ A+ + + S +E + L + +L +A
Sbjct: 113 MLMAAAVCAVIASNLGMFVVMAEIMALCA-VFLTSNSKEGKL-WFALGRLGTLLLAIACW 170
Query: 174 MIYFQTGYLNVELAS----EVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYV 229
+++ + G L++ L ++ L D L L I L AGI PLH W+P AH+NA
Sbjct: 171 LLWQRYGTLDLRLLDMRMQQLPLGSDIWL-LGVIGFGLLAGIIPLHGWVPQAHANASAPA 229
Query: 230 SSILSGIAVKAPIYGLILLSNLGDLSF------LKPFAILSMAFGVIMAILQFNAKRLLA 283
+++ S + +K + G++ LS LG + L +++ G + A+++ N +RLLA
Sbjct: 230 AALFSTVVMKIGLLGILTLSLLGGNAXLWWGIALLVLGMITAFVGGLYALVEHNIQRLLA 289
Query: 284 YHTVSQMGYILLGLSTG--------------NVYGATLYSLAHAMFKGGLFLGVGAIIDA 329
YHT+ +G ILLGL G + G + L H++FK LFLG G++
Sbjct: 290 YHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFR 349
Query: 330 RKRKDLKYLGS-RNILLIVSIAIL 352
+D++ LG + ++SIA+L
Sbjct: 350 TGHRDIEKLGGIGKKMPVISIAML 373
>gi|7525085 NADH dehydrogenase ND4 [Arabidopsis thaliana]
>gi|6686315|sp|P26288|NU4C_ARATH NADH-PLASTOQUINONE
OXIDOREDUCTASE CHAIN 4, CHLOROPLAST
>gi|5881746|dbj|BAA84437.1| (AP000423) NADH
dehydrogenase ND4 [Arabidopsis thaliana]
Length = 506
Score = 99.1 bits (243), Expect = 1e-19
Identities = 107/402 (26%), Positives = 188/402 (46%), Gaps = 57/402 (14%)
Query: 75 VGLDWVS-STFLIAEFLVFGAS-SLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFY 132
+G+D +S T L+ F+ A+ + + V R + + L+L M+SG IG+F S+D F+
Sbjct: 86 MGIDGLSIGTILLTGFITTLATLAAFPVTRDSRFFHF-LMLAMYSGQIGSFSSRDLLLFF 144
Query: 133 VFMELSAVSSYALIASQDRE----AAFKYLLLSMTAS-YVLILALGMIYFQTGY--LNVE 185
+ EL + Y L++ + +A K++L + +S ++LI LG+ + + LN+E
Sbjct: 145 IMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLIGVLGISLYGSNEPTLNLE 204
Query: 186 LASEVGLRDDTPLRLAA-------ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAV 238
L + P+ L I+ +K+ I PLH WLPD H A +L+GI +
Sbjct: 205 LLANKSY----PVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILL 260
Query: 239 KAPIYGLILLSNLGDL----SFLKPFAILSMAFGVIMAIL----QFNAKRLLAYHTVSQM 290
K YGL+ + N+ L S P+ ++ +I A Q N K+ +AY +VS M
Sbjct: 261 KMGAYGLVRI-NMELLPHAHSMFSPWLLVVGTIQIIYAASTSPGQRNLKKRIAYSSVSHM 319
Query: 291 GYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNI---- 343
G+I++G+S+ + GA L ++H LF G D + L +G I
Sbjct: 320 GFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAISIPK 379
Query: 344 --LLIVSIAILSLAISGLG------ITIGGV--AKSYLATTEKAIIYAVSFG---TAFSF 390
+ +++ SLA+ G+ I G+ ++ Y ++ II+ ++ G T
Sbjct: 380 IFTMFTILSMASLALPGMSGFIAEFIVFFGIITSQKYFLISKIFIIFVMAIGMILTPIYL 439
Query: 391 SKLNYYLWKGYG-NEPTNFSILPS------LTLGVLTVLVGI 425
+ ++ GY NFS S L++ +L ++GI
Sbjct: 440 LSMLRQMFYGYKLINIKNFSFFDSGPRELFLSISILLPIIGI 481
>emb|CAB64689.1| (AJ235829) NADH dehydrogenase, putative [Anthocleista grandiflora]
Length = 732
Score = 99.1 bits (243), Expect = 1e-19
Identities = 84/293 (28%), Positives = 136/293 (45%), Gaps = 33/293 (11%)
Query: 70 EIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAF 123
+ +E+G +D ++S LI V S Y+ + K + + + ++G
Sbjct: 80 DFSLELGYLIDPLTSIMLILITTVGITVLFYSDNYMAHDQSYLKFFTYMSFFSTSMLGLV 139
Query: 124 ISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQ 178
S + Y+F EL +SSY LI A K + + + L+L + Y+
Sbjct: 140 TSANLIQIYIFWELVGMSSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWI 199
Query: 179 TGYLNVELASEV-----GLRDDTPLRLAAISLILKAGI------FPLHVWLPDAHSNAKT 227
TG E E+ + PL L +++L AG FPLHVWLPDA T
Sbjct: 200 TGSFEFEDLFEIVNNLISNNEVNPLFLTLCAVLLFAGSVAKSAQFPLHVWLPDA-MEGPT 258
Query: 228 YVSSILSGIAVKAPIYGLILLSNLGDLSFLKP--------FAILSMAFGVIMAILQFNAK 279
+S+++ + A G+ L++ L L + P AI+++ G +A+ Q + K
Sbjct: 259 PISALIHAATMVAA--GIFLVARLLPLFIVIPSIMNLISLIAIITVLLGATLALAQKDIK 316
Query: 280 RLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKR 332
R LAY T+SQ+GY++L L G+ A + + HA K LFLG G+II + +R
Sbjct: 317 RGLAYSTMSQLGYMMLALGMGSYRNALFHLITHAYSKALLFLGSGSIIHSMER 369
>emb|CAB65368.1| (AJ235831) NADH dehydrogenase, putative [Potalia resinifera]
Length = 727
Score = 99.1 bits (243), Expect = 1e-19
Identities = 77/262 (29%), Positives = 123/262 (46%), Gaps = 27/262 (10%)
Query: 95 SSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQ 149
S Y+ + K + + + ++G S + Y+F EL +SSY LI
Sbjct: 102 SDNYMAHDQSYLKFFTYMSFFSTSMLGLVTSANLIQIYLFWELVGMSSYLLIGFWFTRPL 161
Query: 150 DREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEV-----GLRDDTPLRLAAIS 204
A K + + + L+L + Y+ TG E E+ + PL L +
Sbjct: 162 AANACQKAFVTNRVGDFCLLLGILGFYWITGSFEFEDLFEIVNNLISNNEVNPLFLTLCA 221
Query: 205 LILKAGI------FPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLK 258
++L AG FPLHVWLPDA T +S+++ + A G+ L++ L L +
Sbjct: 222 VLLFAGSVAKSAQFPLHVWLPDA-MEGPTPISALIHAATMVAA--GIFLVARLLPLFIVI 278
Query: 259 P--------FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSL 310
P AI+++ G +A+ Q + KR LAY T+SQ+GY++L L G+ A + +
Sbjct: 279 PPIMNLISLIAIITVVLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNALFHLI 338
Query: 311 AHAMFKGGLFLGVGAIIDARKR 332
HA K LFLG G+II + +R
Sbjct: 339 THAYSKALLFLGSGSIIHSMER 360
>gi|11466847 NADH dehydrogenase ND4 [Oryza sativa]
>gi|128732|sp|P12127|NU4C_ORYSA NADH-PLASTOQUINONE
OXIDOREDUCTASE CHAIN 4, CHLOROPLAST
>gi|66181|pir||DERZN4 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 4 - rice chloroplast
>gi|12050|emb|CAA33953.1| (X15901) NADH dehydrogenase
ND4 [Oryza sativa] >gi|226670|prf||1603356CX NADH
dehydrogenase ND4 [Oryza sativa]
Length = 500
Score = 98.7 bits (242), Expect = 1e-19
Identities = 83/275 (30%), Positives = 133/275 (48%), Gaps = 26/275 (9%)
Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTAS- 165
L+L M+SG IG F S+D F++ EL + Y L++ + +A K++L + S
Sbjct: 117 LMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSI 176
Query: 166 YVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLA-----AISLILKAGIFPLHVWLPD 220
+ LI LGM + + ++L + L + I+ +K I PLH WLPD
Sbjct: 177 FFLIGVLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFLIAYAVKLPIIPLHTWLPD 236
Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSN--LGDLSFL-KPFAILSMAFGVIMA----I 273
H A +L+GI +K YGLI ++ L +L P+ ++ A +I A +
Sbjct: 237 THGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSL 296
Query: 274 LQFNAKRLLAYHTVSQMGYILLGL-STGNV--YGATLYSLAHAMFKGGLFLGVGAIIDAR 330
Q N K+ +AY +VS MG+I++G+ S N+ GA L L+H LF G D
Sbjct: 297 GQRNFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRM 356
Query: 331 KRKDLKYLGSRNI------LLIVSIAILSLAISGL 359
+ L+ LG +I + S ++ SLA+ G+
Sbjct: 357 RLVYLEELGGASIPMPKIFTMFSSFSMASLALPGM 391
>sp|P16429|HYCC_ECOLI FORMATE HYDROGENLYASE SUBUNIT 3 (FHL SUBUNIT 3) (HYDROGENASE-3
COMPONENT C) >gi|7446809|pir||G65052 hydrogenase (EC
1.18.99.1) 3 chain 3 - Escherichia coli
>gi|2367154|gb|AAC75765.1| (AE000356) membrane-spanning
protein of hydrogenase 3 (part of FHL complex)
[Escherichia coli K12]
Length = 608
Score = 98.7 bits (242), Expect = 1e-19
Identities = 74/264 (28%), Positives = 131/264 (49%), Gaps = 28/264 (10%)
Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALG 173
++ + + A I+ + F V E+ A+ + + S +E + L + +L +A
Sbjct: 113 MLMAAAVCAVIASNLGMFVVMAEIMALCA-VFLTSNSKEGKL-WFALGRLGTLLLAIACW 170
Query: 174 MIYFQTGYLNVELAS----EVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYV 229
+++ + G L++ L ++ L D L L I L AGI PLH W+P AH+NA
Sbjct: 171 LLWQRYGTLDLRLLDMRMQQLPLGSDIWL-LGVIGFGLLAGIIPLHGWVPQAHANASAPA 229
Query: 230 SSILSGIAVKAPIYGLILLSNLGDLS------FLKPFAILSMAFGVIMAILQFNAKRLLA 283
+++ S + +K + G++ LS LG + L +++ G + A+++ N +RLLA
Sbjct: 230 AALFSTVVMKIGLLGILTLSLLGGNAPLWWGIALLVLGMITAFVGGLYALVEHNIQRLLA 289
Query: 284 YHTVSQMGYILLGLSTG--------------NVYGATLYSLAHAMFKGGLFLGVGAIIDA 329
YHT+ +G ILLGL G + G + L H++FK LFLG G++
Sbjct: 290 YHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFR 349
Query: 330 RKRKDLKYLGS-RNILLIVSIAIL 352
+D++ LG + ++SIA+L
Sbjct: 350 TGHRDIEKLGGIGKKMPVISIAML 373
>sp|P93401|NU2M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2
Length = 488
Score = 98.7 bits (242), Expect = 1e-19
Identities = 96/366 (26%), Positives = 160/366 (43%), Gaps = 50/366 (13%)
Query: 101 KRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDR-----EAAF 155
+R ++ + L+LL ++ + D Y+ +EL ++ Y L AS+ + EA
Sbjct: 107 ERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVLAASKRKSEFSTEAGL 166
Query: 156 KYLLLSMTASYVLILALGMIYFQTGYLNVELASEV-------GLRDD---TPLRLAAISL 205
KYL+L +S +L+ MIY TG + + +++ G R + A+
Sbjct: 167 KYLILGAFSSGILLFGCSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGF 226
Query: 206 ILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILL--------SNLGDLSFL 257
+ K P H+W PD + + T V++ LS IA K I+ IL + L + F
Sbjct: 227 LFKITAVPFHMWAPDIYEGSPTPVTAFLS-IAPKISIFANILRVFIYGSYGATLQQIFFF 285
Query: 258 KPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKG 317
+I SM G + A+ Q KRLLAY ++ +GYI +G S G + G + SL +F
Sbjct: 286 --CSIASMILGALAAMAQTKVKRLLAYSSIGHVGYICIGFSCGTIEG--IQSLLIGLFIY 341
Query: 318 GL-FLGVGAIIDARKRKDLKY------LGSRNILLIVSIAILSLAISGLGITIGGVAKSY 370
L + AI+ A ++ +KY L N +L ++ +I + +G+ G +K Y
Sbjct: 342 ALTTINAFAIVLALRQTRVKYIADLGALAKTNPILAITFSITMFSYAGIPPLAGFCSKFY 401
Query: 371 L--ATTEKAIIYAVSFGTAFSFSKLNYYL-------------WKGYGNEPTNFSILPSLT 415
L A + S G S YY+ W Y N S+L ++T
Sbjct: 402 LFFAALGCGAYFLASVGVVTSVIGCFYYIRLVKRMFFDTPRTWILYEPMDRNKSLLLAMT 461
Query: 416 LGVLTV 421
+T+
Sbjct: 462 SSFITL 467
>sp|O03060|NU4C_HORVU NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4, CHLOROPLAST
>gi|2145424|emb|CAA72935.1| (Y12258) ndhD [Hordeum
vulgare]
Length = 500
Score = 98.3 bits (241), Expect = 2e-19
Identities = 89/280 (31%), Positives = 133/280 (46%), Gaps = 36/280 (12%)
Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLIL 170
L+L M+SG IG F S+D F++ EL + Y L++ K L S T ++L
Sbjct: 117 LMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGG----KRRLYSAT-KFILYT 171
Query: 171 ALGMIYFQTGYLNVEL--ASEVGL------RDDTPLRLAA-------ISLILKAGIFPLH 215
A G I+F G L + L ++E GL P L I+ +K I PLH
Sbjct: 172 AGGSIFFLIGVLGMGLYGSNEPGLDLERLINQSYPATLEILLYFGFLIAYAVKLPIIPLH 231
Query: 216 VWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSN--LGDLSFL-KPFAILSMAFGVIMA 272
WLPD H A +L+GI +K YGLI ++ L +L P+ ++ A +I A
Sbjct: 232 TWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAIQIIYA 291
Query: 273 ----ILQFNAKRLLAYHTVSQMGYILLGL-STGNV--YGATLYSLAHAMFKGGLFLGVGA 325
+ Q N K+ +AY +VS MG+I++G+ S N+ GA L L+H LF G
Sbjct: 292 ASTSLGQRNFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGT 351
Query: 326 IIDARKRKDLKYLGSRNI------LLIVSIAILSLAISGL 359
D + L+ LG +I + S ++ SLA+ G+
Sbjct: 352 ASDRMRLVYLEELGGISIPMPKIFTMFSSFSMASLALPGM 391
>sp|Q9ZD13|NUON_RICPR NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
N) >gi|7432122|pir||H71657 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain N RP537 - Rickettsia
prowazekii >gi|3861086|emb|CAA14986.1| (AJ235272) NADH
DEHYDROGENASE I CHAIN N (nuoN1) [Rickettsia prowazekii]
Length = 458
Score = 98.3 bits (241), Expect = 2e-19
Identities = 91/333 (27%), Positives = 154/333 (45%), Gaps = 38/333 (11%)
Query: 69 REIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDY 128
R IGI + + F I +++ S+ LV ++ ++L+LL G+ A S+++
Sbjct: 63 RNIGISKSIILL---FTIVSLIIYRDYSI-LVGETLKFEFITLMLLSIVGIFVAISSRNF 118
Query: 129 FNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLILALGMIYFQTGYLN 183
+ MEL+A++SYAL + E A KY +L S + + + IY G +
Sbjct: 119 LLLFCGMELTALTSYALAGFKLNDIKSSEGALKYFILGSLVSCLSLFGISFIYGFGGSIQ 178
Query: 184 VELASEVGLRDDTPLRLAAI--------SLILKAGIFPLHVWLPDAHSNAKTYVSSILSG 235
+ L +D+ ++ I S+ K PLH W+PD + + +SS+
Sbjct: 179 FDDILHQ-LNNDSEIKPGLIIGIVLFLSSIFFKLASSPLHFWIPDVYEGSP--ISSVTYF 235
Query: 236 IAVKAPIYGLILLSNLGDL----------SFLKPFAILSMAFGVIMAILQFNAKRLLAYH 285
A + I +I+L N+ L + +K AILSM FG AI Q + KRL+AY
Sbjct: 236 TAA-SKIGMVIVLLNISKLIIGNYYPINYNLIKIIAILSMLFGAFGAIRQTSLKRLMAYS 294
Query: 286 TVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLF----LGVGAIIDARKRKDLKYL 338
T+ +GY+L+G+ N G A LY L +A+ G F + G +D K ++ +
Sbjct: 295 TILNIGYVLIGVLLHNQEGYKAALLYILIYAVVSIGFFTCLIMLFGKDVDNASFKTIEGI 354
Query: 339 GSRNILLIVSIAILSLAISGLGITIGGVAKSYL 371
+ + I+I+ ++ G+ G K YL
Sbjct: 355 AETHKTIAALISIVMFSMIGIPPLTGFFGKYYL 387
>emb|CAA09817.1| (AJ011848) ndhD gene product [Hordeum vulgare]
Length = 500
Score = 98.3 bits (241), Expect = 2e-19
Identities = 89/280 (31%), Positives = 133/280 (46%), Gaps = 36/280 (12%)
Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLIL 170
L+L M+SG IG F S+D F++ EL + Y L++ K L S T ++L
Sbjct: 117 LMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGG----KRRLYSAT-KFILYT 171
Query: 171 ALGMIYFQTGYLNVEL--ASEVGL------RDDTPLRLAA-------ISLILKAGIFPLH 215
A G I+F G L + L ++E GL P L I+ +K I PLH
Sbjct: 172 AGGSIFFLIGVLGMGLYGSNEPGLDLERLINQSYPATLEILLYFGFLIAYAVKLPIIPLH 231
Query: 216 VWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSN--LGDLSFL-KPFAILSMAFGVIMA 272
WLPD H A +L+GI +K YGLI ++ L +L P+ ++ A +I A
Sbjct: 232 TWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAIQIIYA 291
Query: 273 ----ILQFNAKRLLAYHTVSQMGYILLGL-STGNV--YGATLYSLAHAMFKGGLFLGVGA 325
+ Q N K+ +AY +VS MG+I++G+ S N+ GA L L+H LF G
Sbjct: 292 ASTSLGQRNFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGT 351
Query: 326 IIDARKRKDLKYLGSRNI------LLIVSIAILSLAISGL 359
D + L+ LG +I + S ++ SLA+ G+
Sbjct: 352 ASDRMRLVYLEELGGISIPMPKIFTMFSSFSMASLALPGM 391
>gb|AAG23678.1|AF288091_23 (AF288091) NADH dehydrogenase subunit 4 [Thraustochytrium aureum]
Length = 488
Score = 98.3 bits (241), Expect = 2e-19
Identities = 73/246 (29%), Positives = 127/246 (50%), Gaps = 20/246 (8%)
Query: 113 LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYV 167
L++ S ++ F + D FY+F E + + +I +++R+ A+F + L ++ S
Sbjct: 118 LVIQSLILIVFTTIDLVIFYIFFESVLIPMFIIIGIWGTRERKVRASFLFFLYTLVGSLF 177
Query: 168 LILALGMIYFQTGYLNVELASEVGLR--DDTPLRLAA-ISLILKAGIFPLHVWLPDAHSN 224
++LA+ +I+F+ G N + + L A IS +K I P H+WLP+AH
Sbjct: 178 ILLAILLIFFEVGSTNYFILIQYSFSFFHQKILWFAFFISFAVKVPILPFHIWLPEAHVE 237
Query: 225 AKTYVSSILSGIAVKAPIYGLILLS----NLGDLSFLKP----FAILSMAFGVIMAILQF 276
A T S +L+GI +K YG I S LG L F KP A +++ + I A+ Q
Sbjct: 238 APTAGSVMLAGILLKLGTYGFIRYSLPLFPLGTL-FYKPLIYVIASVAVVYTSITALRQT 296
Query: 277 NAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRK 333
+ KR++AY +V+ + ++GL + N + G+ +AH + G LF+ VG + D +
Sbjct: 297 DIKRVIAYASVAHINMTIIGLFSLNLVGIEGSIFQIIAHGVVSGALFICVGVLYDRYHSR 356
Query: 334 DLKYLG 339
++Y G
Sbjct: 357 LIQYYG 362
>pir||A70010 NADH dehydrogenase homolog yufT - Bacillus subtilis
>gi|1934817|emb|CAB07942.1| (Z93937) unknown [Bacillus
subtilis] >gi|2635656|emb|CAB15149.1| (Z99120) similar
to NADH dehydrogenase [Bacillus subtilis]
Length = 774
Score = 97.9 bits (240), Expect = 2e-19
Identities = 108/383 (28%), Positives = 175/383 (45%), Gaps = 63/383 (16%)
Query: 49 VFLPMLLF----PLSRGGVVGGYPREIGIEVGLDWVSSTF-----------LIAEFLVFG 93
+ LP+LLF P+ R G R + L+W+ S L+ L+ G
Sbjct: 8 LILPVLLFIYFLPMIRMTQSGETLRSV-----LEWIPSLGINFTVYIDGLGLLFALLITG 62
Query: 94 ASSL-------YLVKRVTNWKELSLLLLMHSG-LIGAFISKDYFNFYVFMELSAVSSYAL 145
SL YL K + LLM G ++G + + Y+F EL+++SS+ L
Sbjct: 63 IGSLVTLYSIFYLSKEKEQLGPFYVYLLMFMGAMLGVVLVDNVMVLYMFWELTSLSSFLL 122
Query: 146 IA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNV-ELASEVGLRDDTPLR 199
I + R A K LL++++ ++ ++Y T ++ E+ +V L L
Sbjct: 123 IGYWYKREKSRYGAAKSLLITVSGGLCMLGGFILLYLITDSFSIREMVHQVQLIAGHELF 182
Query: 200 LAAISLIL-----KAGIFPLHVWLPDAHSNAKTYVSSIL-SGIAVKAPIYGLILLSNLGD 253
+ A+ LIL K+ FP ++WLPDA A T VS+ L S VKA IY + S +
Sbjct: 183 IPAMILILLGAFTKSAQFPFYIWLPDA-MEAPTPVSAYLHSATMVKAGIYVIARFSPIFA 241
Query: 254 LS-----FLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYIL--LGLSTGNV-YGA 305
S + + +M +G A+ Q + K +LA+ TVSQ+G I+ LG+S + YG
Sbjct: 242 FSAQWFWIVSLVGLFTMVWGSFHAVKQTDLKSILAFSTVSQLGMIISMLGVSAAALHYGH 301
Query: 306 TLYS-----------LAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAIL-- 352
T Y + HA FKG LF+ VG I +D++ LG ++ ++ I
Sbjct: 302 TEYYTVAAMAAIFHLINHATFKGSLFMAVGIIDHETGTRDIRKLGGLMAIMPITFTISLI 361
Query: 353 -SLAISGLGITIGGVAKSYLATT 374
+ +++GL G ++K T+
Sbjct: 362 GTFSMAGLPPFNGFLSKEMFFTS 384
>gb|AAF03177.1|AF110138_9 (AF110138) NADH dehydrogenase subunit 2 [Nephroselmis olivacea]
Length = 496
Score = 97.9 bits (240), Expect = 2e-19
Identities = 89/334 (26%), Positives = 153/334 (45%), Gaps = 35/334 (10%)
Query: 98 YLVKRVTNWKELSLLLLMHSGLIGAFISK-DYFNFYVFMELSAVSSYALIASQ-----DR 151
YL ++ + E +L+L + + +S D+ + Y+ +EL ++ Y L AS+
Sbjct: 106 YLKQKSFHAFEYVILILFSTCSMLIMVSAYDFLSMYLAIELQSLCFYVLAASKRSSEFST 165
Query: 152 EAAFKYLLLSMTASYVLILALGMIYFQTGYLNV-ELASEVGLRDDTPLRLAA-------- 202
EA KY +LS AS +++ MIY TG N EL P L++
Sbjct: 166 EAGLKYFILSAFASGIILFGCSMIYGLTGITNFGELVIFFTGNAAIPFHLSSGILLGILF 225
Query: 203 --ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI---LLSNLGDL--- 254
+ L+ K P H+W PD + + T V++ + I K I GL LL + DL
Sbjct: 226 ISVGLLFKLTAAPFHMWAPDVYEGSPTPVTAFFA-IVPKLAILGLFIRFLLFSCYDLMNV 284
Query: 255 --SFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYS 309
S + ++ SM G + A+ Q KR+LA+ ++ +GYIL+G + G + G LY
Sbjct: 285 CQSIIIFCSLASMMIGALAALSQKRIKRMLAFSSIGHIGYILMGFACGTIDGMQSLLLYM 344
Query: 310 LAHAMFKGGLFLGVGAI----IDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGG 365
+ ++ G F V ++ + +D LG N ++ V+++++ +++G+ G
Sbjct: 345 VIYSFMTIGAFAVVLSLQHQSPSMKYIEDFTMLGKMNPIIAVTMSMILFSMAGIPPLAGF 404
Query: 366 VAKSY--LATTEKAIIYAVSFGTAFSFSKLNYYL 397
AK Y LA E + + G S YY+
Sbjct: 405 FAKYYIFLAAIESGWYWLATIGVLTSVISCFYYI 438
>emb|CAB65021.1| (AJ235830) NADH dehydrogenase, putative [Fagraea sp.]
Length = 721
Score = 97.9 bits (240), Expect = 2e-19
Identities = 77/262 (29%), Positives = 122/262 (46%), Gaps = 27/262 (10%)
Query: 95 SSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQ 149
S Y+ + K + + + ++G S + Y+F EL +SSY LI
Sbjct: 100 SDNYMAHDQSYLKFFTYMSFFSTSMLGLVTSANLIQIYIFWELVGMSSYLLIGFWFTXPL 159
Query: 150 DREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEV-----GLRDDTPLRLAAIS 204
A K + + + L+L + Y+ TG E E+ PL L +
Sbjct: 160 AANACQKAFVTNRIGXFGLLLGILGFYWITGXFEFEDLFEIVNNLISNNQVNPLFLTLCA 219
Query: 205 LILKAGI------FPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLK 258
++L AG FPLHVWLPDA T +S+++ + A G+ L++ L L +
Sbjct: 220 VLLFAGSVAKSAQFPLHVWLPDA-MEGPTPISALIHAATMVAA--GIFLVARLLPLFIVI 276
Query: 259 P--------FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSL 310
P AI+++ G +A+ Q + KR LAY T+SQ+GY++L L G+ A + +
Sbjct: 277 PSIMNLISLIAIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNALFHLI 336
Query: 311 AHAMFKGGLFLGVGAIIDARKR 332
HA K LFLG G+II + +R
Sbjct: 337 THAYSKALLFLGSGSIIHSMER 358
>gi|11467101 nad2 [Marchantia polymorpha] >gi|462764|sp|P26846|NU2M_MARPO
NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2
>gi|282789|pir||S25943 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 2 - liverwort (Marchantia polymorpha)
mitochondrion >gi|786186|gb|AAC09399.1| (M68929) nad2
[Marchantia polymorpha]
Length = 489
Score = 97.5 bits (239), Expect = 3e-19
Identities = 104/409 (25%), Positives = 184/409 (44%), Gaps = 55/409 (13%)
Query: 6 MVISPVIF----SLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRG 61
+ + P IF ++++ I+G + T + PL V L LL V + +LL
Sbjct: 7 LALFPEIFLINATIILLIYGV--VFSTSKKYDYPPLVRNVGWLGLLSVLITILL------ 58
Query: 62 GVVGGYPREIGIEVGLDWV--SSTFLIAEFLVFGASSLYLV-------KRVTNWKELSLL 112
V G P + V + + + T+ FL+ +S ++ + + ++ + L+
Sbjct: 59 -VAVGSPLAVANLVYNNLIIDNFTYFCQIFLLLSTASTMVMCLDYFKQESLNAFESIVLI 117
Query: 113 LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYV 167
LL ++ + D Y+ +EL ++ Y + AS+ EA KY +L +S +
Sbjct: 118 LLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRDSEFSTEAGLKYFILGAFSSGI 177
Query: 168 LILALGMIYFQTGYLNVELASEVGLRDDTPLRLA------------AISLILKAGIFPLH 215
L+ MIY TG N E +++ + L A A+ + K P H
Sbjct: 178 LLFGCSMIYGFTGVTNFEELAKIFTGYEITLFGAQSSGIFMGILFIAVGFLFKITAVPFH 237
Query: 216 VWLPDAHSNAKTYVSSILSGIAVKAPIYGLIL---LSNLGDLSFLKPF---AILSMAFGV 269
+W PD + + T V++ S IA K I +L + + D ++ + F +I SM G
Sbjct: 238 MWAPDVYEGSPTIVTAFFS-IAPKISILANMLRVFIYSFYDPTWQQLFFFCSIASMILGA 296
Query: 270 IMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLF-LGVGAIID 328
+ A+ Q KRLLAY ++ +GY+L+G S G + G + SL +F L + V AI+
Sbjct: 297 LAAMAQNKVKRLLAYSSIGHVGYLLIGFSCGTIEG--IQSLLIGIFIYVLMTVNVFAIVL 354
Query: 329 ARKRKDLKY------LGSRNILLIVSIAILSLAISGLGITIGGVAKSYL 371
A ++ KY L N +L ++++I + +G+ G +K YL
Sbjct: 355 ALRQNRFKYIADLGALAKTNPILAITLSITMFSYAGIPPLAGFCSKFYL 403
>emb|CAB94828.1| (AJ236250) NADH dehydrogenase subunit F [Anthocleista grandiflora]
Length = 691
Score = 97.5 bits (239), Expect = 3e-19
Identities = 83/293 (28%), Positives = 135/293 (45%), Gaps = 33/293 (11%)
Query: 70 EIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAF 123
+ +E+G +D ++S LI V S Y+ + K + + + ++G
Sbjct: 69 DFSLELGYLIDPLTSIMLILITTVGITVLFYSDNYMAHDQSYLKFFTYMSFFSTSMLGLV 128
Query: 124 ISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQ 178
S + Y+F EL +SSY LI A K + + + L+L + Y+
Sbjct: 129 TSANLIQIYIFWELVGMSSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWI 188
Query: 179 TGYLNVELASEV-----GLRDDTPLRLAAISLILKAGI------FPLHVWLPDAHSNAKT 227
TG E E+ + PL L +++L AG FPLHVWLPDA T
Sbjct: 189 TGSFEFEDLFEIVNNLISNNEVNPLFLTLCAVLLFAGSVAKSAQFPLHVWLPDA-MEGPT 247
Query: 228 YVSSILSGIAVKAPIYGLILLSNLGDLSFLKP--------FAILSMAFGVIMAILQFNAK 279
+S+++ + A G+ L++ L L + P AI+++ G +A+ Q + K
Sbjct: 248 PISALIHAATMVAA--GIFLVARLLPLFIVIPSIMNLISLIAIITVLLGATLALAQKDIK 305
Query: 280 RLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKR 332
R LAY T+ Q+GY++L L G+ A + + HA K LFLG G+II + +R
Sbjct: 306 RGLAYSTMXQLGYMMLALGMGSYRNALFHLITHAYSKALLFLGSGSIIHSMER 358
>sp|P77437|HYFF_ECOLI HYDROGENASE-4 COMPONENT F >gi|7466379|pir||E65024 hypothetical
protein b2486 - Escherichia coli (strain K-12)
>gi|1616955|gb|AAB88568.1| (M63654) Hyf F [Escherichia
coli] >gi|1788831|gb|AAC75539.1| (AE000335) hydrogenase
4 membrane subunit [Escherichia coli K12]
>gi|1805545|dbj|BAA16374.1| (D90877) FORMATE
HYDROGENLYASE SUBUNIT 3 (FHL SUBUNIT 3) (HYDROGENASE 3,
SUBUNIT 3). [Escherichia coli]
Length = 526
Score = 97.1 bits (238), Expect = 4e-19
Identities = 99/372 (26%), Positives = 171/372 (45%), Gaps = 51/372 (13%)
Query: 5 IMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLL-FPLSRGGV 63
+++++P++FSLL + R R RL T V L+ LG+ L ++L + +
Sbjct: 9 LLLLTPLLFSLLCF---------ACRKR-RLSATRTVTVLHSLGITLLLILALWVVQTAA 58
Query: 64 VGGYPREIGIEVGLDWVSSTFL----IAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGL 119
G G+ + +D + FL + FL S Y+ V + + + L + G
Sbjct: 59 DAGEIFAAGLWLHIDGLGGLFLAILGVIGFLTGIYSIGYMRHEVAHGELSPVTLCDYYGF 118
Query: 120 IGAFI--------SKDYFNFYVFMELSAVSSYALIASQDR----EAAFKYLLLSMTASYV 167
F+ S + + +E + +SS L+ + EAA+KY+++
Sbjct: 119 FHLFLFTMLLVVTSNNLIVMWAAIEATTLSSAFLVGIYGQRSSLEAAWKYIIICTVGVAF 178
Query: 168 LILALGMIYFQTGYL--NVELA---SEV----GLRDDTPLRLAAISLIL----KAGIFPL 214
+ ++Y + E+A SEV L D T + LA + L++ K G+FP+
Sbjct: 179 GLFGTVLVYANAASVMPQAEMAIFWSEVLKQSSLLDPTLMLLAFVFLLIGFGTKTGLFPM 238
Query: 215 HVWLPDAHSNAKTYVSSILSGIAVKAPI-----YGLILLSNLGD---LSFLKPFAILSMA 266
H WLPDAHS A + VS++LS + + + Y +I+ +G L F +LS+A
Sbjct: 239 HAWLPDAHSEAPSPVSALLSAVLLNCALLVLIRYYIIICQAIGSDFPNRLLLIFGMLSVA 298
Query: 267 FGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG---NVYGATLYSLAHAMFKGGLFLGV 323
++Q + KRLLAY +V MG + + L G ++ A L+ L H++ K LF G
Sbjct: 299 VAAFFILVQRDIKRLLAYSSVENMGLVAVELGIGGPLGIFAALLHILNHSLAKTLLFCGS 358
Query: 324 GAIIDARKRKDL 335
G ++ +DL
Sbjct: 359 GNVLLKYGTRDL 370
>gi|11466676 ndh2 [Marchantia polymorpha] >gi|128656|sp|P06257|NU2C_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 2, CHLOROPLAST
>gi|66151|pir||DELVN2 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 2 - liverwort (Marchantia polymorpha)
chloroplast >gi|453589|emb|CAA28058.1| (X04465) ndh2
[Marchantia polymorpha]
Length = 501
Score = 96.7 bits (237), Expect = 5e-19
Identities = 93/324 (28%), Positives = 142/324 (43%), Gaps = 43/324 (13%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
L+ ++ + + G F+ + D +V +E ++ SY L R EAA KYLL+ T
Sbjct: 113 LIFILTATVGGMFLCGANDLVTIFVSLECLSLCSYLLCGYTKRDIRSNEAAIKYLLIGGT 172
Query: 164 ASYVLILALGMIY-----------FQTGYLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
+S +L +Y G LN E + G + L K +
Sbjct: 173 SSSILAYGFSWLYGLSGGETNIQKITNGLLNAETYNSSGTF--IAFICILVGLAFKLSLV 230
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
P H W PD + + T V + LS V + I GL L + + ++ F L+ AI
Sbjct: 231 PFHQWTPDIYEGSPTPVVAFLS---VTSKIAGLALATRILNILFSFSPNEWKIFLEILAI 287
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
LSM G ++AI Q + KR+LAY ++SQ+GYIL+GL TG++ G T ++ + F + LG
Sbjct: 288 LSMILGNLVAITQTSMKRMLAYSSISQIGYILIGLITGDLKGYTSMTI-YVFFYIFMNLG 346
Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
A I +D L ++ LL S+ + L++ GL G K YL
Sbjct: 347 TFACIILYSLRTGTDNIRDYAGLYIKDPLLSFSLTLCLLSLGGLPPLTGFFGKLYLFWCG 406
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
+ V S L YYL
Sbjct: 407 WQSGFYLLVFIALITSVISLYYYL 430
>gb|AAA84290.1| (L36400) NADH dehydrogenase subunit [Gentiana procera]
Length = 695
Score = 96.7 bits (237), Expect = 5e-19
Identities = 76/262 (29%), Positives = 123/262 (46%), Gaps = 27/262 (10%)
Query: 95 SSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQ 149
S Y+ + K + + + ++G S + Y+F EL +SSY LI
Sbjct: 103 SDNYMAHDQSYLKFFTYMSFFSTSMLGLVTSANLIQIYIFWELVGMSSYLLIGFWFTRPL 162
Query: 150 DREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLR-----DDTPLRLAAIS 204
A K + + + L+L + Y+ TG E E+ + PL L +
Sbjct: 163 AANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFEDLFEIVNNLIFNNEVNPLFLTLCA 222
Query: 205 LIL------KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLK 258
++L K+ FPLHVWLPDA T +S+++ + A G+ L++ L L +
Sbjct: 223 VLLFVGSVAKSAQFPLHVWLPDA-MEGPTPISALIHAATMVAA--GIFLVARLLPLFIVI 279
Query: 259 P--------FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSL 310
P AI+++ G +A+ Q + KR LAY T+SQ+GY++L L G+ A + +
Sbjct: 280 PPIMNLISLIAIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNALFHLI 339
Query: 311 AHAMFKGGLFLGVGAIIDARKR 332
HA K LFLG G+II + +R
Sbjct: 340 THAYSKALLFLGSGSIIHSMER 361
>sp|P33608|NUON_ECOLI NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
14) (NUO14) >gi|7431990|pir||B64999 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain N - Escherichia coli
>gi|1788612|gb|AAC75336.1| (AE000317) NADH dehydrogenase
I chain N [Escherichia coli K12]
>gi|1799634|dbj|BAA16103.1| (D90858) NADH DEHYDROGENASE
I CHAIN N (EC 1.6.5.3) (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN 14) (NUO14). [Escherichia coli]
>gi|1799636|dbj|BAA16104.1| (D90859) NADH DEHYDROGENASE
I CHAIN N (EC 1.6.5.3) (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN 14) (NUO14). [Escherichia coli]
Length = 425
Score = 96.7 bits (237), Expect = 5e-19
Identities = 88/295 (29%), Positives = 143/295 (47%), Gaps = 33/295 (11%)
Query: 133 VFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLN-VELASEVG 191
+ + L + YA + EA+ KY +LS AS L+ + ++Y Q+G L+ V L +G
Sbjct: 75 ISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQSGDLSFVALGKNLG 134
Query: 192 LRD-DTPLRLAAISLIL-----KAGIFPLHVWLPDAHSNAKTYVSSIL---SGIAVKAPI 242
+ PL LA L++ K + P H+W PD + A VS+ L S IA+ +
Sbjct: 135 DGMLNEPLLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVV 194
Query: 243 YGLILLSNLGDLSFLKP----FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI---LL 295
L L + +GD ++ A S+ FG +MA+ Q N KRLL Y ++S +GY+ L+
Sbjct: 195 MRLFLYAPVGDSEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALI 254
Query: 296 GLSTGNV-YGATLYSLAHAMFKGGLFLGVGAII-------DARKRKDLKYLGSRNILLIV 347
L TG + A LA +F GV +++ DA + L +L
Sbjct: 255 ALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAA 314
Query: 348 SIAILSLAISGLGITIGGVAKSY-LATTEKA----IIYAVSFGTAFSFSKLNYYL 397
+ ++ L+++G+ +T+G + K Y LA +A ++ AV G+A L YYL
Sbjct: 315 VMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAIG---LYYYL 366
>emb|CAB59333.1| (AJ236309) NADH dehydrogenase subunit F [Spermacoce assurgens]
Length = 725
Score = 96.7 bits (237), Expect = 5e-19
Identities = 86/315 (27%), Positives = 151/315 (47%), Gaps = 46/315 (14%)
Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILA 171
+ ++G IS ++ Y+F EL VSSY LI A K + + + L+L
Sbjct: 133 TSMLGLVISSNFIQIYIFWELIGVSSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLG 192
Query: 172 LGMIYFQTGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVWLPD 220
+ ++ TG E+ L D + L ++L + K+ FPLHVWLPD
Sbjct: 193 ILGFFWITGSFEFRDLFEILNNLILDNEVNLGFVTLCAVLLFAGAVAKSAQFPLHVWLPD 252
Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGVIMA 272
A T +S+++ + A G+ L++ L L + P+ I+++ G +A
Sbjct: 253 A-MEGPTPISALIXAATMVAA--GIFLVARLLPLFIVIPYIMNFISLVGIITLLLGATLA 309
Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA--- 329
+ Q + KR LAY T+SQ+GY++L L G+ A + + HA K LFLG G++I +
Sbjct: 310 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSVIHSMET 369
Query: 330 ------RKRKDLKYLG--------SRNILLIVSIAILSL-AISGLGITIGGVAKSYLATT 374
+K +++ +G +++ LI ++++ + ++ +A S+L +T
Sbjct: 370 VVGYSPQKSQNIALMGGLTKHGSITKSTFLIGTLSLCGIPPLACFWSKDEILADSWLYST 429
Query: 375 EKAIIYAVSFG-TAF 388
AII +V+ G TAF
Sbjct: 430 XFAIIASVTAGLTAF 444
>gb|AAF03771.1| (AF147712) NADH dehydrogenase subunit [Hydrostachys multifida]
Length = 704
Score = 96.7 bits (237), Expect = 5e-19
Identities = 93/358 (25%), Positives = 160/358 (43%), Gaps = 52/358 (14%)
Query: 10 PVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYP- 68
P++ + +++F T AR L + +++ LL + + + LS + Y
Sbjct: 11 PILIGVGLFLFPT--------ARKNLRRVWAFQSILLLSIAM-LFSIDLSIHQITNDYSY 61
Query: 69 ---------REIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLL 113
++ +E+G +D ++S LI LV S Y+ + S +
Sbjct: 62 QYVWSWVINNDLSLELGFLIDPLTSIMLILITTVGILVLIYSDKYMSHDQGYLRFFSYMS 121
Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVL 168
L + ++G S + YVF EL + SY LI A K + + + L
Sbjct: 122 LFSTSMLGLVTSSNLLQIYVFWELVGMCSYLLIGFWFTRPLAASACQKAFVTNRVGDFGL 181
Query: 169 ILALGMIYFQTGYLN----VELASEVGLRDDTPLRLAAISLIL-------KAGIFPLHVW 217
+L + Y+ TG VE+ +++ +++ L I +L K+ FPLHVW
Sbjct: 182 LLGILGFYWLTGSFEFRSLVEIITKLISQNEINLLFLTICAVLVFAGSVAKSAQFPLHVW 241
Query: 218 LPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAF--------GV 269
LPDA T +S+++ + A G+ L++ L L + P + +AF G
Sbjct: 242 LPDA-MEGPTPISALIHAATMVAA--GIFLVARLFPLFIIIPHILKLIAFTGILTVFLGA 298
Query: 270 IMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
+A+ Q + KR LAY T+SQ+GY++L L G+ A + + HA K LFLG G++I
Sbjct: 299 TLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSVI 356
>pir||A75390 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 DR1494
[similarity] - Deinococcus radiodurans (strain R1)
>gi|6459251|gb|AAF11057.1|AE001993_7 (AE001993) NADH
dehydrogenase I, L subunit [Deinococcus radiodurans]
Length = 645
Score = 96.7 bits (237), Expect = 5e-19
Identities = 99/332 (29%), Positives = 155/332 (45%), Gaps = 36/332 (10%)
Query: 153 AAFKYLLLSMTASYVLILALGMIYFQTGYLNV-ELASEV-GLR-DDTPLRLAAISLIL-- 207
AA K +++ +L + ++Y G L++ ELA + G R + + LA + L++
Sbjct: 184 AARKAFIMNRIGDLGFMLGMFLLYKLYGTLSIPELAGQAAGTRVAQSAIELACLFLLVGA 243
Query: 208 --KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI--- 262
K+G PL WLPDA + + I + V A +Y L++ L L P A
Sbjct: 244 VGKSGQLPLTTWLPDAMAGPTPVSALIHAATMVTAGVY---LVTRSHFLYELAPVASNWV 300
Query: 263 -----LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKG 317
L+ +G + A+ Q + K++LAY TVSQ+GY+ + + G + L HA FK
Sbjct: 301 AWVGGLTALYGALSALNQHDIKKILAYSTVSQLGYMFMAVGLGAYSAGVFHLLTHAFFKA 360
Query: 318 GLFLGVGAIIDA-RKRKDLKYLGS-RNILLIVSIAILS--LAISGLGITIGGVAKSYL-- 371
LFL GA+I A + +D++ +G R + +A L LAISG+ I G +K +
Sbjct: 361 LLFLCAGAVIHALHEEQDVRAMGGMRRFMPFTHVAALMGVLAISGIPIWSGFFSKDAILA 420
Query: 372 -ATTEKAIIYAVSFG----TAFSFSKLNYYLWKG-YGNE---PTNFSILPSLTLGVLTVL 422
A + +Y + G TAF + + +W+G Y + P L LGVL L
Sbjct: 421 AAWAQSPWLYVIGLGVALLTAFYMGRWYFLVWRGEYRGQVAHPHEADGLMRFPLGVLAAL 480
Query: 423 VGIELGGKLSKYDLLIPLAFLTFYALRGYLTR 454
LGG L+ +P L +A YL R
Sbjct: 481 A--TLGGFLN-IPAFLPSLGLPKHAFDTYLGR 509
>gb|AAF65739.1|AF228525_9 (AF228525) F420H2 dehydrogenase subunit FpoL [Methanosarcina mazei]
Length = 672
Score = 96.7 bits (237), Expect = 5e-19
Identities = 111/405 (27%), Positives = 175/405 (42%), Gaps = 69/405 (17%)
Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVLI 169
L + ++ +S + +V EL + SY LI AA K L+ V+
Sbjct: 122 LFTAAMLSLVLSDNILQLFVSWELVGLCSYLLIGFWFEKPSAAAAAKKAFLTTRIGDVMF 181
Query: 170 LALGMIYFQTGYLNV---------------------ELAS-EVGLRDDTPLRLAAISLIL 207
L G+I + L V ELA+ ++ + L I+L+
Sbjct: 182 LT-GIIVLTSDLLKVSGGFQDGVYLLRFDEIFSYIPELAALQINILGFEISHLTIITLLF 240
Query: 208 ------KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGL-----ILLSNLGDLSF 256
K+G FPLHVWLPDA T + I + V A +Y + + ++ L
Sbjct: 241 FGGAVGKSGQFPLHVWLPDAMEGPTTVSALIHAATMVTAGVYLVARTFPMFIAAPDSLMV 300
Query: 257 LKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG------ATLYSL 310
+ F + F M I+ + KR+LA+ T+SQ+GY++LGL G G + + +
Sbjct: 301 VAYFGGFTALFAGTMGIVMNDLKRVLAFSTISQLGYMMLGLGLGTAIGLEAVGISLFHLI 360
Query: 311 AHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIA---ILSLAISGLGITIGGVA 367
HA FK LFL G++I A +D++ LG ++ ++ A I +LA++G GI +
Sbjct: 361 NHAFFKALLFLCAGSVIHAVGTQDMRELGGVGKVMPITAATMTIAALALAGFGIPGTSIG 420
Query: 368 KSYLATTEKAIIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGV-LTVLVGIE 426
S + + I A FG S N+ P FSIL +L + + L+ +
Sbjct: 421 TSGFMSKDPIIEAAYLFGEHSS----NWI--------PYVFSILAALLTSIYIFRLIFMT 468
Query: 427 LGGK-LSKYD-------LLIPLAFLTFYALR-GYLTRRDYVIRLE 462
GK S Y + IPL+ L +AL G LTR ++ LE
Sbjct: 469 FTGKPRSNYHGHESPAIMTIPLSILAIFALAFGALTRTGFMEFLE 513
>gi|6137793 NADH dehydrogenase subunit 4 [Metridium senile]
>gi|3914174|sp|O47497|NU4M_METSE NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4 >gi|7432346|pir||T11894 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - sea
anemone (Metridium senile) mitochondrion
>gi|913913|gb|AAB32499.1| (S75445) NADH dehydrogenase
complex subunit 4 [Metridium senile=sea anemones,
Peptide, 491 aa] >gi|2920995|gb|AAC04640.1| (AF000023)
NADH dehydrogenase subunit 4 [Metridium senile]
Length = 491
Score = 96.3 bits (236), Expect = 7e-19
Identities = 91/379 (24%), Positives = 156/379 (41%), Gaps = 57/379 (15%)
Query: 36 PLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGAS 95
PL V + L + L LL P+ + + W S FL+ EFL+
Sbjct: 81 PLFLAVDGISLFFLILTALLTPIC---------------ILISWNSIKFLLKEFLL---- 121
Query: 96 SLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQD 150
LL + L+G F + D FY+ E + + LI +
Sbjct: 122 ---------------CLLFLEVLLMGVFSALDLLLFYILFEGILIPMFLLIGVWGSREEK 166
Query: 151 REAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAA---ISLIL 207
A++ + + S ++L + +Y G + + + L T + A +SL +
Sbjct: 167 VRASYYFFFYTFVGSVFMLLGIFQLYSSVGTTDYQALLNIELPISTQKWIFAGFFLSLAV 226
Query: 208 KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLS---NLGDLSFLKPF---- 260
K P H+WLP AH A S IL+GI +K YG + + + PF
Sbjct: 227 KIPQVPFHIWLPQAHVEAPVSGSVILAGILLKLGGYGFLRFTWPILPAATEYFAPFVIML 286
Query: 261 AILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKG 317
+++++ +G + Q + KRL+AY +V+ MG + LGL T + G A LAH +
Sbjct: 287 SVIAIIYGSLTTCRQVDLKRLIAYSSVAHMGLVTLGLFTHTIEGLVAAVFMMLAHGLVSS 346
Query: 318 GLFLGVGAIIDARKRKDLKYLGSRNILLIVSIA---ILSLAISGLGITIGGVAK--SYLA 372
LF+ V + + + +KY + + ++ +L+L + ++ VA+ S LA
Sbjct: 347 ALFIAVTYLYERHHTRLIKYYRGITFSMPIFVSVFLVLTLTNMAIPLSCNFVAEFFSLLA 406
Query: 373 TTEKAIIYAVSFGTAFSFS 391
E I+ V T +S
Sbjct: 407 AFEYNIVIGVLAATGMVWS 425
>gi|9695386 NADH dehydrogenase subunit 2 [Phytophthora infestans]
>gi|6692639|gb|AAF24782.1|U17009_14 (U17009) NADH
dehydrogenase subunit 2 [Phytophthora infestans]
Length = 497
Score = 96.3 bits (236), Expect = 7e-19
Identities = 97/420 (23%), Positives = 187/420 (44%), Gaps = 42/420 (10%)
Query: 15 LLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLS-RGGVVGGYPREIGI 73
L++ +FG F + + + +YLL + L + L + ++ G + I
Sbjct: 25 LILLLFGVFYKKNQNMQKILIIKNITTIIIYLLLILLILTLNITNISNNILNGV---LII 81
Query: 74 EVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHS-GLIGAFISKDYFNFY 132
++ +++ + F YL+++ N E+++L+L+ GL+ + Y
Sbjct: 82 NNFTQFIKVILILSTIICFLIQQKYLIQQKINAYEINILMLISLLGLMLLVSTNHLITLY 141
Query: 133 VFMELSAVSSYALIASQDR-----EAAFKYLLLSMTASYVLILALGMIYFQTGYLNVE-- 185
+ +EL ++S Y L ++Q + EA KY +L AS ++ +IY TG LN
Sbjct: 142 LAIELQSLSFYILTSTQKKSILSIEAGLKYFILGSIASGFILFGSSIIYAITGSLNFNNI 201
Query: 186 --LASEVGLRDDTPLRLAA--------ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSG 235
+ S + ++ + ++ + ++ K G P H WLPD + A +SS +
Sbjct: 202 FLILSNINFLENINILISLSYGLIFILVGILFKVGASPFHFWLPDVYEGAPNNISSFFA- 260
Query: 236 IAVKAPIYGLIL---------LSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHT 286
I K G+++ +S ++ F + LSM G + A+ Q KRLLAY +
Sbjct: 261 IVPKIAFIGILIRLFFEIFFNISYFFEI-FFYIISFLSMLIGALSALQQKKIKRLLAYSS 319
Query: 287 VSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAI-IDARKRK---DLKYLG 339
+S +G+IL+G ++ N+ LY L + + L+ ++ I+ + K DL +
Sbjct: 320 ISHVGFILIGFTSNMLNNIPFILLYVLIYIITSINLWTSYLSLNINHKPIKYLTDLSNIH 379
Query: 340 SRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATTEKAIIYAVSFGTAFSFSKLNYYL 397
+ N L+ + I I +++G+ G +K ++ + + V FG S YYL
Sbjct: 380 TINKLIAIIIIINIFSLAGIPPLAGFFSKLFIFFSAIKNNYFSLVFFGILISVLSSFYYL 439
>pir||E81251 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain M Cj1567c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968984|emb|CAB73555.1| (AL139079) NADH
dehydrogenase I chain M [Campylobacter jejuni]
Length = 495
Score = 96.3 bits (236), Expect = 7e-19
Identities = 82/324 (25%), Positives = 150/324 (45%), Gaps = 38/324 (11%)
Query: 75 VGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVF 134
VG+D ++ ++ L+ S L+L ++ +S + + ++G F +KD FYVF
Sbjct: 68 VGVDSIALVLILLSSLMIFLSFLFL--KLEQKALISCIFFLEFAIMGLFSAKDGLLFYVF 125
Query: 135 MELSAVSSYALIA--SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVEL------ 186
E S + ++ +D A K+ + + S ++++AL IY YLN +L
Sbjct: 126 WEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSILMLVAL--IY--QAYLNYQLLNIFTF 181
Query: 187 --------ASEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIA 237
AS V + L A I+ +KA +FPLH W P ++N+ VS +L +
Sbjct: 182 DLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPLHTWAPKVYANSPILVSVML--VV 239
Query: 238 VKAPIYGLILL-------SNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQM 290
K +G +L +++ + + I+S+ + ++A N K L+AY ++S +
Sbjct: 240 FKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVYNALIAYRAENIKELIAYSSISHL 299
Query: 291 GYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKY---LGSRNIL 344
G ++LG+ + N + GA Y AH + G LFL V + D+ + L + L
Sbjct: 300 GVMILGIFSLNALGISGAVFYMFAHGIVTGALFLMVELLYQRYHTYDISFYHSLAKKAPL 359
Query: 345 LIVSIAILSLAISGLGITIGGVAK 368
+ ++ LA L +T+ V +
Sbjct: 360 FSIFFMLILLASVSLPLTVSFVGE 383
>pir||F81220 NADH dehydrogenase I, N chain NMB0259 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225482|gb|AAF40713.1| (AE002382) NADH dehydrogenase
I, N subunit [Neisseria meningitidis MC58]
Length = 480
Score = 96.3 bits (236), Expect = 7e-19
Identities = 94/317 (29%), Positives = 152/317 (47%), Gaps = 31/317 (9%)
Query: 109 LSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQD-----REAAFKYLLLSMT 163
LSL L+ G+ + + Y+ +EL +++ YALIA + EAA KY +L
Sbjct: 111 LSLFALL--GMSVMVSAGHFLTAYIGLELLSLALYALIALRRDSGFAAEAALKYFVLGAL 168
Query: 164 ASYVLILALGMIYFQTGYLNVE--LASEVGLR-DDTPLRLAAISLIL----KAGIFPLHV 216
AS +L+ + M+Y TG L LAS ++ L+L + +++ K G P H+
Sbjct: 169 ASGLLLYGISMVYGATGSLEFAGVLASSFNEEANEWLLKLGLVFIVVAVAFKLGAVPFHM 228
Query: 217 WLPDAHSNAKTYVSSILSGIAVK--APIYGL-ILLSNLGDL--SFLKPFAIL---SMAFG 268
W+PD + A T V++++ G A K A ++ IL++ LG + + FA+L S+ G
Sbjct: 229 WVPDVYHGAPTSVTALV-GTAPKIAAVVFTFRILVTGLGTVHHDWSLMFALLAAASLLVG 287
Query: 269 VIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNV------YGATLYSLAHAMFKGGLFLG 322
+ AI+Q N KR+ AY TVS MG+ILL G V Y A Y+L A G L +
Sbjct: 288 NLAAIMQTNIKRMFAYSTVSHMGFILLAFMAGAVGFAAGLYYAITYALMAAAGFGVLMVL 347
Query: 323 VGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAK--SYLATTEKAIIY 380
+ DL L + L + ++ +++G+ +G AK +A ++ ++
Sbjct: 348 SDGDNECENISDLAGLNQHRVWLAFLMLLVMFSMAGIPPLMGFYAKFGVIMALLKQGHVW 407
Query: 381 AVSFGTAFSFSKLNYYL 397
F S YYL
Sbjct: 408 LSVFAVIMSLIGAFYYL 424
>gb|AAF78606.1|AF260826_5 (AF260826) NADH subunit 4 [Cochliomyia hominivorax]
Length = 446
Score = 96.3 bits (236), Expect = 7e-19
Identities = 84/307 (27%), Positives = 141/307 (45%), Gaps = 20/307 (6%)
Query: 33 FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFL-----IA 87
F PL +++ FL +L F + Y I G D +S + I
Sbjct: 10 FLFPLCLMYNTYWMVQSFLFLLSFIFVLMNMYSNYFMSISYLFGCDMISYGLILLSLWII 69
Query: 88 EFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA 147
++ + S+Y N L+++LL+ L+ F S F FY+F E S + + LI
Sbjct: 70 SLMLMASESVYKYNNYMNLFLLNIILLLIL-LVLTFSSMSLFMFYLFFESSLIPTLFLIL 128
Query: 148 S----QDREAAFKYLLL-SMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAA 202
+R A YLL ++ S +++ + +Y TG LN L + +
Sbjct: 129 GWGYQPERLQAGVYLLFYTLLVSLPMLIGIFYLYKLTGTLNFYLLNNFMFNYELLYFSLV 188
Query: 203 ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILL---SNLGDLSFLKP 259
++ ++K +F +H+WLP AH A S IL+GI +K YGL+ + L L F
Sbjct: 189 MAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVFPFLQLMGLKFNFI 248
Query: 260 FAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLST---GNVYGATLYSLAHA 313
+ +S+ GV+++++ Q + K L+AY +V+ MG +L GL T + G+ +AH
Sbjct: 249 WVSISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLMTLTYMGICGSYTLMIAHG 308
Query: 314 MFKGGLF 320
+ GLF
Sbjct: 309 LCSSGLF 315
>pir||T14239 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Synechocystis sp. (strain PCC 6803)
>gi|537489|gb|AAA85105.1| (U14130) NADH dehydrogenase
subunit 4 [Synechocystis sp.]
Length = 515
Score = 96.3 bits (236), Expect = 7e-19
Identities = 102/352 (28%), Positives = 158/352 (43%), Gaps = 42/352 (11%)
Query: 74 EVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELS-------LLLLMHSGLIGAFISK 126
+ GL W S I+ LV A + + W+ S L++L++S I +++
Sbjct: 74 QFGLSWSVSVDGISMPLVLLAGLVTTLSIFAAWQVTSKPRLFYFLMVLLYSAQIVLIVAQ 133
Query: 127 DYFNFYVFM-ELSAVSSYALIAS---QDRE-AAFKYLLLSMTASYVLILALGMIYFQTGY 181
D M EL V Y L+ S Q R+ AA K+LL + AS +++A G+ ++ G
Sbjct: 134 DRLLLLSIMWELELVPVYLLVVSWGGQKRQYAAMKFLLYTAAASVFILVAPGLSFY--GD 191
Query: 182 LNVELASEVGLRDDTPLRL--------AAISLILKAGIFPLHVWLPDAHSNAKTYVSSIL 233
+ +E+GL+D P+ L A ++ +K FP H WLPDAH A VS IL
Sbjct: 192 VTTFDIAELGLKD-YPIALELFLYTGLALVAFAVKISHFPFHTWLPDAHGEASAPVSMIL 250
Query: 234 SGIAVKAPIYGLILLSNLGDLS--------FLKPFAILSMAFGVIMAILQFNAKRLLAYH 285
+G+ +K YGLI L NLG L L ++++ +G + Q + KR LAY
Sbjct: 251 AGVLLKMGGYGLIRL-NLGLLEDAHVYFAPILVILGVVNIIYGGFSSFAQAH-KRRLAYS 308
Query: 286 TVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFL-GVGAIIDARKRKDLKYLGSRNIL 344
+VS MG++LL S L L+H + LF G D L +G+ +
Sbjct: 309 SVSHMGFVLLLFSITIGIMDHLQMLSHGLIARVLFFPWTGVTYDRTNTLSLAQMGNIGKV 368
Query: 345 LIVSIAIL------SLAISGLGITIGGVAKSYLATTEKAIIYAVSFGTAFSF 390
+ A+ SLA+ G+ + +A + IY+ F T F
Sbjct: 369 MPTVFALFPMGAMASLALPGMSGFVSELA--VFVGVSSSDIYSTPFKTVTVF 418
>gb|AAK40664.1| NADH dehydrogenase subunit N (NuoN) [Sulfolobus solfataricus]
Length = 483
Score = 96.0 bits (235), Expect = 9e-19
Identities = 95/385 (24%), Positives = 174/385 (44%), Gaps = 24/385 (6%)
Query: 7 VISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGV-VG 65
++ P IF L I F G RFRL + + ++ LLGV L L++ + +
Sbjct: 28 ILIPSIFILFSSISVLFIDNGLDENRFRLSV---ILSVVLLGVSLAFLIYSWTASVINYT 84
Query: 66 GYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFIS 125
+ + + I+V + S T L S +++ T LSL+LL GL +
Sbjct: 85 LFSKSLLIDVPGYFFSITVFSIGILAILLSKDHIISWPTRSSMLSLMLLSLLGLFYMSFA 144
Query: 126 KDYFNFYVFMELSAVSSYALIASQDR----EAAFKYLLLSMTASYVLILALGMIYFQTGY 181
+ +S+ +SYA+ + +A KYL++ + +S ++I+ TG
Sbjct: 145 NNIIIVLTTWAISSAASYAIAMLRKDYKSVDAGIKYLIMGLLSSSIMIIGFASYLISTGS 204
Query: 182 LNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAK----TYVSSILSGIA 237
L + + +I+ + K G FP WLPD +++A ++SS+ I
Sbjct: 205 LLFTTSVIYPNLFFFSISFISIAFLFKIGAFPFQAWLPDVYTDADRISVAFISSVGKLIG 264
Query: 238 VKAPIYGLILLS--NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILL 295
+ P++ ++ LS N+ +L ++ SM G I A + + +L++ +++QMGYIL+
Sbjct: 265 I-IPLFRVVYLSDPNMVELVIFIVISVASMLVGNITAFSRRDVAAILSFSSITQMGYILI 323
Query: 296 GLSTGN------VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKD---LKYLGSRNILLI 346
G + V G + SLA+ + + GLF V + D L+ + S++ L
Sbjct: 324 GFAMFTVSPAIAVVGILVQSLAYGIAQVGLFGIVSHVEKVSGTSDISGLRGISSQDKPLA 383
Query: 347 VSIAILSLAISGLGITIGGVAKSYL 371
+I +L L++ G+ G K +L
Sbjct: 384 FAIVVLILSLLGIPPIFGFWGKLFL 408
>gi|11467090 NADH dehydrogenase subunit 4 [Chlamydomonas reinhardtii]
>gi|128744|sp|P20113|NU4M_CHLRE NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4 >gi|487065|pir||S37612 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Chlamydomonas reinhardtii mitochondrion
>gi|12512|emb|CAA47112.1| (X66484) NADH dehydrogenase
[Chlamydomonas reinhardtii] >gi|563693|gb|AAB93441.1|
(U03843) NADH dehydrogenase subunit 4 [Chlamydomonas
reinhardtii]
Length = 443
Score = 96.0 bits (235), Expect = 9e-19
Identities = 74/284 (26%), Positives = 132/284 (46%), Gaps = 35/284 (12%)
Query: 76 GLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFM 135
G+D V+ + ++ ++F + L++ V + LL ++ ++ A D FY+
Sbjct: 68 GIDGVALSLMLLTTVLFPICMM-LLRTVAGFMTFILLEVL---VLSALCVLDLLGFYILF 123
Query: 136 ELSAVSSYALIASQ---DREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGL 192
E S + + LI EAA+K +L +M S VL+ L MIY + G NV L
Sbjct: 124 EASLILLFLLIGRAPYGSLEAAYKIVLYTMAGSLVLLPTLFMIYSECGTTNV-LYMTCAY 182
Query: 193 RDDTPLRLAAISLI-LKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNL 251
T L ++++ +K + P+H+WLP+AH A T S +L+G+ +K L +
Sbjct: 183 NHQTVLGWGLLAVLAVKIPLMPVHLWLPEAHVAAPTAGSVLLAGVLLK--------LGGI 234
Query: 252 GDLSFLKP---------------FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLG 296
G L F+ P ++S F + + Q + K+++AY +++ M + L
Sbjct: 235 GFLRFMLPVVPEFCVSVFPLVSTLCLVSFLFSTLSTLRQIDLKKIVAYSSIAHMSMVTLA 294
Query: 297 L---STGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKY 337
+ S + Y ++ +AH + LFL VG + D K + Y
Sbjct: 295 IFSQSEFSAYSSSFLMIAHGLISPALFLIVGILYDRAHTKFILY 338
>pir||T06260 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - wheat
mitochondrion >gi|2326762|emb|CAA74779.1| (Y14435) NADH
dehydrogenase subunit 2 [Triticum aestivum]
Length = 488
Score = 96.0 bits (235), Expect = 9e-19
Identities = 83/299 (27%), Positives = 141/299 (46%), Gaps = 31/299 (10%)
Query: 101 KRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDR-----EAAF 155
+R ++ + L+LL ++ + D Y+ +EL ++ Y + AS+ + EA
Sbjct: 107 ERFDAFEFIVLILLSTCSMLLMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGL 166
Query: 156 KYLLLSMTASYVLILALGMIYFQTGYLNVELASEV-------GLRDD---TPLRLAAISL 205
KYL+L +S +L+ MIY TG + + +++ G R + A+
Sbjct: 167 KYLILGAFSSGILLFGCSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGF 226
Query: 206 ILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYG-----LILLSNLGDLSFLKPF 260
+ K P H+W PD + + T V++ LS IA K I+ I+ S G L + F
Sbjct: 227 LFKITAVPFHMWAPDIYEGSPTPVTAFLS-IAPKISIFANMLRVFIVASYGGTLQQIFFF 285
Query: 261 -AILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGL 319
+I SM G + A+ Q KRLLAY ++ +GYI +G S G + G + SL +F L
Sbjct: 286 CSIASMILGALAAMAQTKVKRLLAYSSIGHVGYICIGFSCGTIEG--IQSLLIGIFIYAL 343
Query: 320 F-LGVGAIIDARKRKDLKY------LGSRNILLIVSIAILSLAISGLGITIGGVAKSYL 371
+ AI+ A ++ +KY L N +L ++ +I + +G+ G +K YL
Sbjct: 344 MTIDAFAIVLALRQTRVKYIADLGALAKTNPILAMTFSITMFSYAGIPPLAGFCSKFYL 402
>gi|11467867 subunit 4 of NADH-plastoquinoneoxidoreductase [Nephroselmis
olivacea] >gi|5880796|gb|AAD54889.1|AF137379_112
(AF137379) subunit 4 of NADH-plastoquinoneoxidoreductase
[Nephroselmis olivacea]
Length = 500
Score = 96.0 bits (235), Expect = 9e-19
Identities = 76/303 (25%), Positives = 141/303 (46%), Gaps = 35/303 (11%)
Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTAS- 165
L+L M++G +G F+ +D F++ EL + Y L++ + AA K++L + S
Sbjct: 117 LMLAMYTGQLGVFVVQDLLLFFLMWELELIPVYLLVSCWGGKKRLYAATKFILYTALGSI 176
Query: 166 YVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAA-----ISLILKAGIFPLHVWLPD 220
++L+ AL M + + ++++ P+ + I+ +K P+H WLPD
Sbjct: 177 FILLGALTMPFMGIQGVTFDMSTLAYREYSLPVEILLYTGFLIAYGVKLPAIPVHTWLPD 236
Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL--------SFLKPFAILSMAFGVIMA 272
H A +L+GI +K Y LI + N+ L +L ++++ + + +
Sbjct: 237 THGEAHYSTCMLLAGILLKMGGYALIRI-NMNMLPHAHALFSPWLIGVGVVNIIYAALTS 295
Query: 273 ILQFNAKRLLAYHTVSQMGYILLG---LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA 329
Q N KR +AY +VS MG++L+G LS + GA L ++H + LF G D
Sbjct: 296 FAQRNLKRKIAYSSVSHMGFVLIGIGSLSEAGLNGAMLQMISHGLIGASLFFLAGTTYDR 355
Query: 330 RKRKDLKYLGS------RNILLIVSIAILSLAISGLG-------ITIGGVAKSYLATTEK 376
+ L+ +G + L + ++ SLA+ G+ + +G V + T +
Sbjct: 356 TRTLVLEEMGGLATFMPKTFALFTACSLASLALPGMSGFFAELLVFLGLVTSEAYSPTFR 415
Query: 377 AII 379
AI+
Sbjct: 416 AIM 418
>gi|11466400 subunit 2 of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
>gi|7259543|gb|AAF43844.1|AF166114_56 (AF166114) subunit
2 of NADH-plastoquinoneoxidoreductase [Mesostigma
viride]
Length = 502
Score = 96.0 bits (235), Expect = 9e-19
Identities = 113/438 (25%), Positives = 190/438 (42%), Gaps = 60/438 (13%)
Query: 1 MNAVIMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSR 60
++AV+ + SL I I I+ F+ R L Y + +LG+ L ML
Sbjct: 12 IDAVLPEAIIICSSLFILI-----IDLIFQRRANAVLPY----MAILGLILSMLSLLFQW 62
Query: 61 GGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELS------LLLL 114
G +E+ +G + + + IA L+ SS+ V + E S L++
Sbjct: 63 NG------KEVTAFLG-SFQTDSLSIAFRLLIALSSMLCVLLSIEYLENSKKTLSEFLVI 115
Query: 115 MHSGLIGAFI---SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMTASY 166
+ +GA + S D ++ +E + SY L + EA+ KYLL+ +S
Sbjct: 116 FLTATLGAMLLCGSNDILMIFLSLETLGLCSYILTGYMKKDIRSNEASIKYLLIGAASSS 175
Query: 167 VLILALGMIY-FQTGYLNV-ELASEV-------GLRDDTPLRLAAISLILKAGIFPLHVW 217
+L+ ++Y G++ + E+A+ + L L L + + K P H W
Sbjct: 176 ILLYGFSLLYGLSHGHIEIHEIAANLIKDQNGNSLASLVALALIIVGISFKIAAAPFHQW 235
Query: 218 LPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAILSMAF 267
PD + A T V + LS V + GL+L + + + F + AILSMA
Sbjct: 236 APDVYEGAPTPVVAFLS---VSSKAAGLMLATRIMTILFPYIINEWHNIFQILAILSMAI 292
Query: 268 GVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGAT---LYSLAHAMFKGGLFLGV- 323
G I+AI Q N KR+L Y +++Q G++L+GL GN+ G + +Y L + G F V
Sbjct: 293 GNIIAISQTNIKRMLGYSSIAQAGFLLVGLLAGNINGYSSMLVYMLIYLFMNLGAFACVI 352
Query: 324 --GAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATTEKAII 379
+ + +D L ++ +L + ++I L++ G+ G K YL A E
Sbjct: 353 LFSLKTGSDQIRDYGGLYLKDPILALCLSICLLSLGGIPPFGGFFGKLYLFWAGWEAGSY 412
Query: 380 YAVSFGTAFSFSKLNYYL 397
V G S + YY+
Sbjct: 413 LLVFVGLLTSVISIFYYI 430
>gb|AAG19079.1| (AE005006) Vng0562c [Halobacterium sp. NRC-1]
Length = 489
Score = 96.0 bits (235), Expect = 9e-19
Identities = 80/275 (29%), Positives = 128/275 (46%), Gaps = 36/275 (13%)
Query: 132 YVFMELSAVSSYALIASQDREAAF----KYLLLSMTASYVLILALGMIYFQTGYLNVELA 187
Y+ EL V++Y L+ + +AA KYL + ++ + ++Y TG
Sbjct: 89 YLAYELLTVATYPLVVHDETDAARAAGRKYLAYTFGGGVAVLAGVVLVYHATGTTAFAPG 148
Query: 188 SEVGLRDDTP-LRLAAISLIL-----KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAP 241
GL P L AA L++ KA + PLH WLPDA A T VS +L +AV
Sbjct: 149 GIGGLATADPTLARAAFGLLITGFGVKAALMPLHSWLPDAMV-APTPVSGLLHAVAVVKS 207
Query: 242 -----------IYGLILLSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQM 290
+YG+ L+++L + A +++ ++A+ Q N KR LA+ TVSQ+
Sbjct: 208 GVFGIARVLLDVYGIDLVAHLNVGMAVAVVAAITLIVASVIALRQDNLKRRLAFSTVSQL 267
Query: 291 GYILLGLSTG-----------NVYGATLYSLAHAMFKGGLFLGVGAI---IDARKRKDLK 336
YI+LGL+ G + G L+ AHA K LF GA+ D+
Sbjct: 268 SYIVLGLAVGAATPGADATKWALIGGLLHIPAHAFMKLTLFFCAGALHVETHTDDISDMA 327
Query: 337 YLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL 371
+G R L + + A+ + ++G+ + G V+K +L
Sbjct: 328 GIGKRMPLTMTAFAVAAAGMAGIPLVAGFVSKYFL 362
>pir||T13881 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - Chlorogonium
elongatum mitochondrion >gi|3413803|emb|CAA73990.1|
(Y13644) NADH dehydrogenase subunit 4 [Chlorogonium
elongatum]
Length = 460
Score = 95.6 bits (234), Expect = 1e-18
Identities = 72/280 (25%), Positives = 126/280 (44%), Gaps = 33/280 (11%)
Query: 109 LSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDR---EAAFKYLLLSMTAS 165
++ LL+ ++GA D FY+ E S + + LIA +AA+K +L +M S
Sbjct: 101 IATFLLLEIVILGALTVLDLLGFYILFEASLILLFLLIARTPYGSIDAAYKIVLYTMAGS 160
Query: 166 YVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLIL---KAGIFPLHVWLPDAH 222
VL+ + M+Y + G N+ + + + D L L + K + P+H+WLP+AH
Sbjct: 161 LVLLPIIFMLYAECGSTNLFVLLDANISPDRQTFLGWGMLAVFAVKIPLMPVHLWLPEAH 220
Query: 223 SNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKP---------------FAILSMAF 267
A T S +L+G+ +K L +G + ++ P + S F
Sbjct: 221 VAAPTAGSVLLAGVLLK--------LGGIGFIRYMIPLTPSFTVWVFPLVACMCLCSFLF 272
Query: 268 GVIMAILQFNAKRLLAYHTVSQMGYILL---GLSTGNVYGATLYSLAHAMFKGGLFLGVG 324
+ I Q + K+++AY +++ M + L +S + Y +T +AH + GLFL VG
Sbjct: 273 STLSTIRQIDLKKIVAYSSIAHMALVTLTIFSMSEFSTYSSTFMMIAHGLVSPGLFLLVG 332
Query: 325 AIIDARKRKDLKYL-GSRNILLIVSIAILSLAISGLGITI 363
+ + K L Y G + + I S L + L +
Sbjct: 333 LLYERAHTKFLLYFSGLGSYMPIFSTLFFLLTCANLSFPL 372
>gi|11497581 NADH dehydrogenase ND4 subunit [Spinacia oleracea]
>gi|7636162|emb|CAB88784.1| (AJ400848) NADH
dehydrogenase ND4 subunit [Spinacia oleracea]
Length = 460
Score = 95.6 bits (234), Expect = 1e-18
Identities = 94/323 (29%), Positives = 146/323 (45%), Gaps = 42/323 (13%)
Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLIL 170
L+L M+S IG F S+D F++ EL + Y L++ K L S T ++L
Sbjct: 77 LMLAMYSAQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGG----KKRLYSAT-KFILYT 131
Query: 171 ALGMIYFQTGYLNVEL--ASEVGLRDDT------PLRLAAISLI-------LKAGIFPLH 215
A G I+ G L V L ++E L +T P+ L I I +K I PLH
Sbjct: 132 AGGSIFLLMGVLGVGLYGSNEPTLNLETLVNQSYPVALEIIFYIGFFIAFAVKLPIIPLH 191
Query: 216 VWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL----SFLKPFAILSMAFGVIM 271
WLPD H A +L+GI +K YGL+ + N+ L S P+ ++ +I
Sbjct: 192 TWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRI-NMELLPHAHSIFSPWLMIIGTMQIIY 250
Query: 272 AIL----QFNAKRLLAYHTVSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVG 324
A Q N K+ +AY +VS MG+I++G+S+ + GA L ++H LF G
Sbjct: 251 AASTSPGQRNLKKRIAYSSVSHMGFIIIGISSITDTGLNGAILQIISHGFIGAALFFLAG 310
Query: 325 AIIDARKRKDLKYLGS------RNILLIVSIAILSLAISGLGITIGGVAKSY-LATTEKA 377
D + L +G + L S ++ SLA+ G+ I + + L T++K
Sbjct: 311 TSYDRIRLVYLDEMGGIAIPMPKIFTLFSSFSMASLALPGMSGFIAELIVFFGLITSQKY 370
Query: 378 II---YAVSFGTAFSFSKLNYYL 397
++ ++FG A YL
Sbjct: 371 LLIPKLLITFGMAIGMILTPIYL 393
>pir||G82822 NADH-ubiquinone oxidoreductase, NQO13 subunit XF0317 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105140|gb|AAF83128.1|AE003884_13 (AE003884)
NADH-ubiquinone oxidoreductase, NQO13 subunit [Xylella
fastidiosa]
Length = 501
Score = 95.6 bits (234), Expect = 1e-18
Identities = 93/369 (25%), Positives = 171/369 (46%), Gaps = 47/369 (12%)
Query: 71 IGIEVGLDWVSSTFLIAEFLVFGASSLYLV-------KRVTNWKELSLLLLMHSGLIGAF 123
IG +G+D ++ ++ LV + L L+ +RV + ++ L++ IG F
Sbjct: 73 IGYNLGVDGIAVALVLLTTLV---TVLVLIGSWGAINQRVPQY--VAAFLILEGVTIGIF 127
Query: 124 ISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVLILALGMIYFQT 179
+ D FYVF E + + +I + AA K+ L + S ++++ L +Y +
Sbjct: 128 AATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAIKFFLYTFLGSVLMLVGLIYLYLKG 187
Query: 180 GYLNVE--LASEVGLRDDTPLRLA-AISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGI 236
G + A ++ ++ T L A I+ +K +FP+H WLPDAH A T S IL+ I
Sbjct: 188 GSFQLADLYAMQLSAKEQTWLFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAAI 247
Query: 237 AVKAPIYGLIL--LSNLGDLS-----FLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQ 289
A+K YG + L + D S + +++++ + ++A++Q + K+L+AY +++
Sbjct: 248 ALKIGGYGFLRFNLPIVPDASHEFAWVVIALSLIAVIYVGLVALVQEDMKKLIAYSSIAH 307
Query: 290 MGYILLGL--------STGN-------VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKD 334
MG++ LG+ GN + GA + ++H G +F +G + D +
Sbjct: 308 MGFVTLGIFISFTLVRDFGNTDAARLGLQGAMVQMISHGFVSGAMFTCIGVLYDRMHTRC 367
Query: 335 L-KYLGSRNIL--LIVSIAILSLAISGLGITIGGVAK--SYLATTEKAIIYAVSFGTAFS 389
+ Y G N++ +A +GL T G V + LA+ +K + A G
Sbjct: 368 IADYGGVVNVMPWFATFAMFFYMANAGLPGTSGFVGEFMVILASFQKHPLVAFGAGATLV 427
Query: 390 FSKLNYYLW 398
+ Y LW
Sbjct: 428 ITAA-YTLW 435
>gi|5835927 NADH dehydrogenase subunit 4 [Anopheles quadrimaculatus A]
>gi|464238|sp|P33511|NU4M_ANOQU NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4 >gi|7522046|pir||T12006 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4
[similarity] - Anopheles quadrimaculatus A mitochondrion
(fragment) >gi|744737|prf||2015259J NADH
dehydrogenase:SUBUNIT=4 [Anopheles quadrimaculatus]
Length = 448
Score = 95.2 bits (233), Expect = 1e-18
Identities = 89/313 (28%), Positives = 151/313 (47%), Gaps = 23/313 (7%)
Query: 29 FRARFRLPLTYEVKALYLLG--VFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLI 86
F F PL++ + +++ +FL +F ++ + Y I GLD +S ++
Sbjct: 6 FMMLFMFPLSFLKNSYWMVQNLIFLLAFIFMINLSSM--NYFNYISYYFGLDMISYGLIL 63
Query: 87 AEFLVFGASSLYLVKRVT--NWKELSLLLLMHS--GLIGAFISKDYFNFYVFMELSAVSS 142
F + G + K T N+K L + +++ L+ F S F FY+F E S + +
Sbjct: 64 LSFWICGLMLMASEKVFTYNNYKNLFIFMILFLLFMLVLTFSSMSVFMFYLFFEASLIPT 123
Query: 143 YALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTP 197
LI +R A YLL ++ AS L++ + I L+ L D
Sbjct: 124 LFLILGWGYQPERLQAGVYLLFYTLLASLPLLIGIFYILNFMDTLSFTLLLNYMFTDMNL 183
Query: 198 LRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF 256
L L+ I + ++K +F +H+WLP AH A S IL+GI +K YGL+ + +L +S
Sbjct: 184 LYLSLIFAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGILLKLGGYGLLRMFSLLQVSG 243
Query: 257 LKP---FAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYGAT---L 307
+K + +S+ GV+++++ Q + K L+AY +V+ MG +L GL T +G T
Sbjct: 244 IKYNYWWISVSLIGGVLISLVCLRQTDLKALIAYSSVAHMGIVLSGLLTMTYWGLTGSYA 303
Query: 308 YSLAHAMFKGGLF 320
+AH + GLF
Sbjct: 304 LMIAHGLCSSGLF 316
>emb|CAA05498.1| (AJ002490) ndhB [Arabidopsis thaliana]
Length = 512
Score = 95.2 bits (233), Expect = 1e-18
Identities = 82/324 (25%), Positives = 144/324 (44%), Gaps = 42/324 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L + EA KYLL+
Sbjct: 130 LLFILTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDIRSNEATMKYLLMGGA 189
Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
+S +L+ +Y +G +N ++ + G+ L + + K +
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSLA 247
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
P H W PD + + T V + LS V + + + + D+ F L+ AI
Sbjct: 248 PSHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAI 304
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
LSM FG ++AI Q + KR+LAY ++ Q+GY+++G+ G+ G + + +F + LG
Sbjct: 305 LSMIFGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLG 364
Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
A I +D L +++ L +S+A+ L++ GL G K +L
Sbjct: 365 TFACIILFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCG 424
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVLSIYYYL 448
>dbj|BAA35095.1| (AB015981) MnhA [Staphylococcus aureus]
Length = 801
Score = 95.2 bits (233), Expect = 1e-18
Identities = 117/443 (26%), Positives = 208/443 (46%), Gaps = 71/443 (16%)
Query: 5 IMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKAL-YLLGVFLPMLLFPLSRGGV 63
I VI P+IF+L+I I +R R+ L + V ++ ++ +++ L+ G
Sbjct: 6 IAVILPLIFALIIPIL--------YRFFKRIHLGWFVLSVPIVIFIYMLTLIKTTMSGNT 57
Query: 64 VG---GYPREIGIEVGLDWVSSTFLIAEFLVFGASSL-------YLVKRVTNWKELSLLL 113
V + G+ L ++ L+ L+ G SL YL K LL
Sbjct: 58 VMKTLNWMPHFGMNFDL-YLDGLGLLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCYLL 116
Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS-QDREAAF----KYLLLSMTASY-- 166
L ++G +S + Y+F EL++ SS+ LI+ ++R+A+ K L++++
Sbjct: 117 LFMGAMLGVVLSDNVIILYLFWELTSFSSFLLISFWRERQASIYGAQKSLIITVFGGLSL 176
Query: 167 ---VLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLIL-----KAGIFPLHVWL 218
+++LA+ F Y+ ++ ASE+ ++P + A+ LI+ K+ FP ++WL
Sbjct: 177 LGGIILLAIPTQSFSIQYM-IQHASEI---QNSPFFIFAMILIMIGAFTKSAQFPFYIWL 232
Query: 219 PDAHSNAKTYVSSIL-SGIAVKAPIYGL-----ILLSNLGDLSFLKPFAILSMAFGVIMA 272
PDA A T VS+ L S VKA +Y + I ++ G + + ++++ + + A
Sbjct: 233 PDA-MEAPTPVSAYLHSATMVKAGLYLIARMTPIFAASQGWVWTVTLVGLITLFWASLNA 291
Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTG-----------NVYGATL-----YSLAHAMFK 316
Q + K +LA+ TVSQ+G I+ L G +Y A + + HA FK
Sbjct: 292 TKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFHLINHATFK 351
Query: 317 GGLFLGVGAIIDARKRKDLKYLGSRNILLIVSI---AILSLAISGLGITIGGVAK-SYLA 372
G LF+ GA+ + +D+K LG ++ +S I +L+++G+ G ++K S+L
Sbjct: 352 GALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGFLSKESFLE 411
Query: 373 TTEKAIIYAVSFGTAFSFSKLNY 395
TT + S FS L Y
Sbjct: 412 TT-----FTASQANLFSVDTLGY 429
>gi|7525078 NADH dehydrogenase ND2 [Arabidopsis thaliana]
>gi|7525095|ref|NP_051119.1| NADH dehydrogenase ND2
[Arabidopsis thaliana] >gi|5881739|dbj|BAA84430.1|
(AP000423) NADH dehydrogenase ND2 [Arabidopsis thaliana]
>gi|5881756|dbj|BAA84447.1| (AP000423) NADH
dehydrogenase ND2 [Arabidopsis thaliana]
Length = 389
Score = 95.2 bits (233), Expect = 1e-18
Identities = 82/324 (25%), Positives = 144/324 (44%), Gaps = 42/324 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L + EA KYLL+
Sbjct: 7 LLFILTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDIRSNEATMKYLLMGGA 66
Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
+S +L+ +Y +G +N ++ + G+ L + + K +
Sbjct: 67 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSLA 124
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
P H W PD + + T V + LS V + + + + D+ F L+ AI
Sbjct: 125 PSHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAI 181
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
LSM FG ++AI Q + KR+LAY ++ Q+GY+++G+ G+ G + + +F + LG
Sbjct: 182 LSMIFGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLG 241
Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
A I +D L +++ L +S+A+ L++ GL G K +L
Sbjct: 242 TFACIILFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCG 301
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 302 WQAGLYFLVSIGLLTSVLSIYYYL 325
>gb|AAA93548.2| (L04272) NADH dehydrogenase subunit 4 [Anopheles quadrimaculatus A]
Length = 472
Score = 95.2 bits (233), Expect = 1e-18
Identities = 89/313 (28%), Positives = 151/313 (47%), Gaps = 23/313 (7%)
Query: 29 FRARFRLPLTYEVKALYLLG--VFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLI 86
F F PL++ + +++ +FL +F ++ + Y I GLD +S ++
Sbjct: 6 FMMLFMFPLSFLKNSYWMVQNLIFLLAFIFMINLSSM--NYFNYISYYFGLDMISYGLIL 63
Query: 87 AEFLVFGASSLYLVKRVT--NWKELSLLLLMHS--GLIGAFISKDYFNFYVFMELSAVSS 142
F + G + K T N+K L + +++ L+ F S F FY+F E S + +
Sbjct: 64 LSFWICGLMLMASEKVFTYNNYKNLFIFMILFLLFMLVLTFSSMSVFMFYLFFEASLIPT 123
Query: 143 YALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTP 197
LI +R A YLL ++ AS L++ + I L+ L D
Sbjct: 124 LFLILGWGYQPERLQAGVYLLFYTLLASLPLLIGIFYILNFMDTLSFTLLLNYMFTDMNL 183
Query: 198 LRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF 256
L L+ I + ++K +F +H+WLP AH A S IL+GI +K YGL+ + +L +S
Sbjct: 184 LYLSLIFAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGILLKLGGYGLLRMFSLLQVSG 243
Query: 257 LKP---FAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYGAT---L 307
+K + +S+ GV+++++ Q + K L+AY +V+ MG +L GL T +G T
Sbjct: 244 IKYNYWWISVSLIGGVLISLVCLRQTDLKALIAYSSVAHMGIVLSGLLTMTYWGLTGSYA 303
Query: 308 YSLAHAMFKGGLF 320
+AH + GLF
Sbjct: 304 LMIAHGLCSSGLF 316
>pir||S77331 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4.1a -
Synechocystis sp. (strain PCC 6803)
>gi|1652513|dbj|BAA17434.1| (D90906) NADH dehydrogenase
subunit 4 [Synechocystis sp.]
Length = 502
Score = 94.8 bits (232), Expect = 2e-18
Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 22/289 (7%)
Query: 71 IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKEL--SLLLLMHSGLIGAFISKDY 128
+ + +D +S +I L+ G + +Y + N L L+LL+++G+ GA ++++
Sbjct: 71 LNYSLAIDGLSLPLVILNNLLTGVA-IYSIGPNVNRSRLYYGLILLINAGISGALLAQNL 129
Query: 129 FNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILALGMIYFQTGYLNV 184
F VF EL + Y +IA E A+ K+LL + + +++ A + +G +
Sbjct: 130 LLFIVFYELELIPFYLMIAIWGGEKRGYASMKFLLYTAFSGLLVLAAFLGMSLLSGSHSF 189
Query: 185 ELASEVGLRDDTPLRLAAISLIL-----KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVK 239
+ E+ + + LIL K + PLH WLPDA++ A + +L GI K
Sbjct: 190 DYNPEITQTFTESAQTILLILILLGFGIKIPLVPLHTWLPDAYTEASPATAILLGGILAK 249
Query: 240 APIYGLI----LLSNLGDLSFLKPFAIL---SMAFGVIMAILQFNAKRLLAYHTVSQMGY 292
YG+I L F AI+ ++ +G + AI Q + KR++AY ++ MGY
Sbjct: 250 LGTYGIIRFGLQLFPQTWAQFAPVLAIIGTVTVLYGALSAIAQKDIKRMVAYSSIGHMGY 309
Query: 293 ILLGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYL 338
IL+ + G +V GA ++H + LF VG + +DL L
Sbjct: 310 ILVAAAAGTELSVLGAVAQMVSHGLILALLFHLVGIVERKAGTRDLDVL 358
>pir||F75464 probable NADH-ubiquinone/plastoquinone subunit - Deinococcus
radiodurans (strain R1)
>gi|6458595|gb|AAF10453.1|AE001941_6 (AE001941)
NADH-ubiquinone/plastoquinone subunit, putative
[Deinococcus radiodurans]
Length = 814
Score = 94.8 bits (232), Expect = 2e-18
Identities = 88/279 (31%), Positives = 138/279 (48%), Gaps = 24/279 (8%)
Query: 112 LLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASY 166
LL ++G +S + + F E+++V+S+ LI S R+ A K L+S
Sbjct: 110 LLCFGGSMLGLVLSDNLVALFGFWEMTSVTSFLLIGLWHTRSAARDGAVKAFLISALGGL 169
Query: 167 VLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLIL-----KAGIFPLHVWLPDA 221
L+ A M+ G N+ ++G +PL + A+ L K+ P H+WLP A
Sbjct: 170 GLLAAAAMLSIAGGSPNLSQL-DLGAVRASPLFVPALLCTLLAAFTKSAQLPFHIWLPTA 228
Query: 222 HSNAKTYVSSIL-SGIAVKAPI-----YGLILLSNLGDLSFLKPFAILSMAFGVIMAILQ 275
A T +S+ L S VKA + +GLI ++ P +L+M +G +A+ Q
Sbjct: 229 -MEAPTPISAFLHSATMVKAGVVLVAKFGLIFGTSALWSGITVPLGLLTMVWGSWLALRQ 287
Query: 276 FNAKRLLAYHTVSQMGYI--LLGLS-TGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKR 332
+ K LLAY TVSQ+G + L GL+ G + AT + L HA FK LF VG I
Sbjct: 288 TDLKALLAYSTVSQLGLLMSLYGLADAGGRFAATAHLLNHAAFKAALFFVVGIIDHETGT 347
Query: 333 KDLKYLGS--RNILLIVSIAIL-SLAISGLGITIGGVAK 368
+ + YL + R + + IA+L +L+++GL G V+K
Sbjct: 348 RQIPYLQNLRRQMPVTFVIALLAALSMAGLPPLGGFVSK 386
>pir||G75389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 [similarity] -
Deinococcus radiodurans (strain R1)
>gi|6459249|gb|AAF11055.1|AE001993_5 (AE001993) NADH
dehydrogenase I, N subunit [Deinococcus radiodurans]
Length = 492
Score = 94.8 bits (232), Expect = 2e-18
Identities = 98/361 (27%), Positives = 153/361 (42%), Gaps = 43/361 (11%)
Query: 54 LLFPLSRGGVV----GGYPREIGIEV-------GLDWVSSTFLIAEFLVFGASSLYLVKR 102
+LF L+ G + GG P G++V L + L+ ++ GA LV
Sbjct: 43 ILFVLASGASLVWLWGGAPWAAGMDVPRSAFAGALRADPAALLLGGTVLLGALLTLLVSL 102
Query: 103 VTNWKEL-------SLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQD----R 151
T ++ +LL+ +G + S D + +E+ +++SY L QD +
Sbjct: 103 DTAYRARVSFAEFDALLMYAVTGCLLIAFSGDLIVMLIGLEIMSLASYVLATLQDSRRSQ 162
Query: 152 EAAFKYLLLSMTASYVLILALGMIYFQTGYLNVE-LASEVGLRDDTPLRLAAISLIL--- 207
EA KY LL S +LI L +Y TG LN +A +V D + + +L
Sbjct: 163 EAGLKYFLLGSVGSAILIYGLAFLYGATGTLNYAGIAQQVSALDPQNIGILVTGTLLVLS 222
Query: 208 ----KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI------LLSNLGDLSFL 257
K + P H W PD +S A T VS LS + A G++ L + G S L
Sbjct: 223 GFGVKIALVPFHQWTPDVYSGAPTLVSLFLSTVVKVAAFAGMLRVFGGALAAGPGWHSVL 282
Query: 258 KPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGAT---LYSLAHAM 314
+ L++ G A+ Q N KRLLAY V+ G++ + L G Y L + +
Sbjct: 283 QILVALTLVIGNAAALYQQNFKRLLAYSAVAHTGFLAMTLLGDTAQGGAALGYYLLVYTL 342
Query: 315 FKGGLFLGVGAIIDARKR---KDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL 371
G V A+ + D++ L R+ V++A +++GL G AK YL
Sbjct: 343 MTVGALAVVAALQRTEEGLTINDMRGLYYRHPAYAVALAFCLASLAGLPPFAGFFAK-YL 401
Query: 372 A 372
A
Sbjct: 402 A 402
>emb|CAB67220.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit 4 [Oenothera
elata subsp. hookeri]
Length = 500
Score = 94.8 bits (232), Expect = 2e-18
Identities = 88/287 (30%), Positives = 131/287 (44%), Gaps = 35/287 (12%)
Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLIL 170
L+L M+SG IG+F S+D F++ E + Y L++ K L S T ++L
Sbjct: 117 LMLAMYSGQIGSFSSRDLLLFFLMWEFELIPVYLLLSMWGG----KKRLYSAT-KFILYT 171
Query: 171 ALGMIYFQTGYLNVEL--ASEVGLRDDT------PLRLAAISLI-------LKAGIFPLH 215
A G I+ G L + L ++E L +T P+ L I + +K I PLH
Sbjct: 172 AGGSIFLLIGVLGIGLYGSNEPTLNFETLANQSYPVALEVIFYVGFLIAFAVKLPIIPLH 231
Query: 216 VWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL----SFLKPFAILSMAFGVIM 271
WLPD H A +L+GI +K YGL+ + N+ L P I+ A +I
Sbjct: 232 TWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRI-NMELLPHAHCLFSPGLIIVGAIQIIY 290
Query: 272 AIL----QFNAKRLLAYHTVSQMGYILLG---LSTGNVYGATLYSLAHAMFKGGLFLGVG 324
A Q N K+ +AY ++S MG+I++G LS + GA L ++H LF G
Sbjct: 291 AASTSPGQLNLKKRIAYSSISHMGFIIIGIGSLSDTGLNGAILQIISHGFIGAALFFLAG 350
Query: 325 AIIDARKRKDLKYLGSRNI---LLIVSIAILSLAISGLGITIGGVAK 368
D + L +G I L ++ILS+A L G VA+
Sbjct: 351 TSYDRIRLLYLDEMGGMAIPLPKLFTMLSILSMASLALPGLSGFVAE 397
>pir||S37071 NADH dehydrogenase I chain nuoN - Escherichia coli
>gi|416009|emb|CAA48373.1| (X68301) NADH dehydrogenase
I, subunit nuoN [Escherichia coli]
Length = 425
Score = 94.4 bits (231), Expect = 3e-18
Identities = 87/295 (29%), Positives = 141/295 (47%), Gaps = 33/295 (11%)
Query: 133 VFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLN-VELASEVG 191
+ + L + YA + EA+ KY +LS AS L+ + ++Y Q+G L+ V L +G
Sbjct: 75 ISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQSGDLSFVALGKNLG 134
Query: 192 ---LRDDTPLR---LAAISLILKAGIFPLHVWLPDAHSNAKTYVSSIL---SGIAVKAPI 242
L D L L + L K + P H+W PD + A VS+ L S IA+ +
Sbjct: 135 DGMLNDALLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVV 194
Query: 243 YGLILLSNLGDLSFLK----PFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI---LL 295
L L + +GD ++ + S+ FG +MA+ Q N KRLL Y ++S +GY+ L+
Sbjct: 195 MRLFLYAPVGDSEQVRRGAGDYRFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALI 254
Query: 296 GLSTGNV-YGATLYSLAHAMFKGGLFLGVGAII-------DARKRKDLKYLGSRNILLIV 347
L TG + A LA +F GV +++ DA + L +L
Sbjct: 255 ALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAA 314
Query: 348 SIAILSLAISGLGITIGGVAKSY-LATTEKA----IIYAVSFGTAFSFSKLNYYL 397
+ ++ L+++G+ +T+G + K Y LA +A ++ AV G+A L YYL
Sbjct: 315 VMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAIG---LYYYL 366
>gi|11467244 NADH dehydrogenase ND2 [Zea mays] >gi|11467270|ref|NP_043102.1|
NADH dehydrogenase ND2 [Zea mays]
>gi|1171805|sp|P46619|NU2C_MAIZE NADH-PLASTOQUINONE
OXIDOREDUCTASE CHAIN 2, CHLOROPLAST
>gi|902273|emb|CAA60338.1| (X86563) NADH dehydrogenase
ND2 [Zea mays] >gi|902299|emb|CAA60363.1| (X86563) NADH
dehydrogenase ND2 [Zea mays]
Length = 510
Score = 94.4 bits (231), Expect = 3e-18
Identities = 84/324 (25%), Positives = 142/324 (42%), Gaps = 42/324 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L R EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGA 189
Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
+S +L+ +Y +G +N ++ + G+ L + L K
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGLGFKLSPA 247
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
P H W PD + + T V + LS V + + L + + D+ F L+ AI
Sbjct: 248 PFHQWTPDVYEGSPTPVVAFLS---VTSKVAASALATRILDIPFYFSSNEWHLLLEILAI 304
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
LSM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ + + +F + LG
Sbjct: 305 LSMILGNLLAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364
Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
A I +D L +++ L +S+A+ L++ GL G K YL
Sbjct: 365 TFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCG 424
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVLSIYYYL 448
>pir||S51503 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - yeast
(Yarrowia lipolytica) mitochondrion
Length = 486
Score = 94.4 bits (231), Expect = 3e-18
Identities = 79/316 (25%), Positives = 152/316 (48%), Gaps = 23/316 (7%)
Query: 72 GIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGA--FISKDYF 129
G+ G+D +S TF++ L+ + L + L L++ GL+ F + DY
Sbjct: 76 GLLFGIDGLSLTFMLLTVLLMPLTLLGNWYNINFNSNLYYTLVLAIGLVILLNFWALDYI 135
Query: 130 NFYVFMELSAVSSYALI---ASQDREAAFKYLLLSMTASYVL----ILALGMIYFQTGYL 182
+FY+ E + + L+ S D E A Y+L+ T+ + I+ + ++ T ++
Sbjct: 136 SFYMLFEATLPLLFILMHIYGSSDSERASFYVLMFTTSGSLFMTLSIVVISIVLNTTNFI 195
Query: 183 NVELASEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAP 241
N L + L T + L +++++K +FP+HVWLP HS + S IL+G+ +K
Sbjct: 196 NHNLFV-LSLDLQTIIWLGTFMAMMVKTPLFPIHVWLPVVHSESPLAGSMILAGLILKLA 254
Query: 242 IYGL--ILLSNLGDLSFLKP-----FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYIL 294
+Y + +LL L + L ++L++ + + Q + K ++AY ++S MG +
Sbjct: 255 LYAMLRLLLPTLCEAQMLYTPMMYIISLLTIMLTSLATLRQIDTKVIIAYSSISHMGMAM 314
Query: 295 LGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDL--KYLGSRNILLIVSI 349
LG+ + +YG+ + +AH LFL VG ++ R + Y G + ++
Sbjct: 315 LGVCSNTSLGIYGSMVLGVAHGFVSPALFLIVGGMLYDRYHMRIVNYYKGLTTYMPQLAT 374
Query: 350 AILSLAISGLGITIGG 365
I+ L+ + +G + G
Sbjct: 375 YIIMLSFANIGTPLTG 390
>gi|11466553 NADH dehydrogenase, subunit 2 [Reclinomonas americana]
>gi|7431986|pir||S78184 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 2 - Reclinomonas americana (ATCC
50394) mitochondrion >gi|2258383|gb|AAD11917.1|
(AF007261) NADH dehydrogenase, subunit 2 [Reclinomonas
americana]
Length = 498
Score = 94.4 bits (231), Expect = 3e-18
Identities = 88/361 (24%), Positives = 163/361 (44%), Gaps = 54/361 (14%)
Query: 85 LIAEFLVFGASSLYLV--------KRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFME 136
LI + ++ +SS+ ++ +R+ +++ + L+LL G++ S D + Y+ +E
Sbjct: 86 LITKIVLLISSSIAIIISFDYIKKERINSFEYMVLVLLGTLGMLLIISSYDLMSMYLAIE 145
Query: 137 LSAVSSYALIASQDR-----EAAFKYLLLSMTASYVLILALGMIYFQTGYLNVE------ 185
++ Y L A + EA KY +L +S +++ + ++Y TG E
Sbjct: 146 FQSLCLYVLAAFKRNSLFSVEAGLKYFVLGAFSSGIMLFGISILYGFTGVTGFEDLGKLL 205
Query: 186 -LASEVGLRDDTPLRLA----AISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
+S L + + L ++ L+ K P HVW+PD + + T V++ A+
Sbjct: 206 IFSSNESLLSSSGIILGIVFISVGLLFKIYAVPFHVWVPDVYQGSPTIVTAFF---AIVP 262
Query: 241 PIYGLILLSNLGD------LSFLKPF----AILSMAFGVIMAILQFNAKRLLAYHTVSQM 290
I L LL+ L + + +P +I SM G + A+ Q KRLLAY + +
Sbjct: 263 SISVLTLLTRLYSSVLHDLIQYWQPVFIFCSIASMLIGSLGALSQRRIKRLLAYSAIGHV 322
Query: 291 GYILLGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRK---------DLKYL 338
GY+L+ LSTG + G +Y + + + F ++ RKR+ +L+ L
Sbjct: 323 GYVLIALSTGTPEGIRGLLVYIVIYIIMSACFFT---ILLSLRKRENNTQIVMIDELRAL 379
Query: 339 GSRNILLIVSIAILSLAISGLGITIGGVAKSY--LATTEKAIIYAVSFGTAFSFSKLNYY 396
N +L +++AI+ +++G+ G +K Y L + + V G S YY
Sbjct: 380 YKSNPILSLTLAIVLFSMAGIPPLAGFFSKLYVFLPAIHEGLFLLVVVGIIASVISAVYY 439
Query: 397 L 397
L
Sbjct: 440 L 440
>gi|11499413 F420H2:quinone oxidoreductase, 53.9 kDa subunit (nuoM)
[Archaeoglobus fulgidus] >gi|7483297|pir||H69477
coenzyme F420--quinone oxidoreductase (EC 1.6.5.-) 53.9K
chain AF1825 [similarity] - Archaeoglobus fulgidus
>gi|2648719|gb|AAB89424.1| (AE000976) F420H2:quinone
oxidoreductase, 53.9 kDa subunit (nuoM) [Archaeoglobus
fulgidus]
Length = 487
Score = 94.4 bits (231), Expect = 3e-18
Identities = 79/284 (27%), Positives = 145/284 (50%), Gaps = 30/284 (10%)
Query: 105 NWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLL 160
N +++L L+++G ++ Y+F+E+S ++S+ LI + A Y +
Sbjct: 126 NLYAVAMLWLVYAG--------NFILLYIFLEISLLASFLLIYMYGYGNRQWVAVLYFVW 177
Query: 161 SMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPD 220
+ A + +L + +I F+ + VG T L + +++K H+WLP
Sbjct: 178 THIAGVLALLGILIIGFENSTMAFNAVKAVGF---TAWLLIFLGMLVKLPGLGPHIWLPW 234
Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFGVIMAIL------ 274
AH+ A T VS++LS + V Y L+ + + D SF+ + + +A+ ++ +I
Sbjct: 235 AHAEAPTPVSALLSPLTVGLAGYVLLRVYMI-DSSFIDQYRDIIIAYAIVSSIYAGFSVF 293
Query: 275 -QFNAKRLLAYHTVSQMGYILLGLSTGN--VYGATLYSLAHAMFKGGLFLGVGAIIDA-R 330
Q + KRLLAY TVSQMGY+L+ L G+ + G + ++HA K LF+ GAII +
Sbjct: 294 KQKDYKRLLAYSTVSQMGYVLIALCLGSYGLLGVVIQYISHAFGKSILFMTAGAIIASFH 353
Query: 331 KRKDLKYLGSRN--ILLIVSIAILS-LAISGLGITIGGVAKSYL 371
+D+ + + + I + A+L + +SG+ +TIG + Y+
Sbjct: 354 GLRDINRMSGMHEYVPTIANAALLGFMTLSGI-LTIGMFGEFYI 396
>pir||D70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoN2 -
Aquifex aeolicus >gi|2983796|gb|AAC07354.1| (AE000737)
NADH dehydrogenase I chain N [Aquifex aeolicus]
Length = 488
Score = 94.4 bits (231), Expect = 3e-18
Identities = 100/385 (25%), Positives = 177/385 (45%), Gaps = 35/385 (9%)
Query: 13 FSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGVV-GGYPRE- 70
F LL+ F F +E + + R + V + V + +L+ + +G G + +
Sbjct: 22 FILLLLAFILFTLELFIKGKERRLVLNVVSYVGYFSVLMSLLIPWMYKGDTFYGNFTNDP 81
Query: 71 IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFN 130
+ + V + V T I F ASS + K+ + + E +L L+G F+ +N
Sbjct: 82 LAVTVKIFAVLITLAILPF----ASSYFSAKK-SFYGEFYYILAFT--LLGVFVLASTYN 134
Query: 131 F---YVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYL 182
YV +EL +V Y L A ++ +E AFKYL+L + + +Y +G L
Sbjct: 135 LIILYVALELVSVGFYILTALLRGSTEAKEGAFKYLILGGLSIALASYGAAFMYIYSGSL 194
Query: 183 NVELASEVGLRDDTPLRLAA----ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAV 238
++ +D L L I L +K G P H W+PDA+ A T V+++++ +
Sbjct: 195 DLREILTYQGKDIHYLVLGLVFFLIGLAVKIGAVPFHYWVPDAYQGAPTPVTALMASVGK 254
Query: 239 KAPIYGLILLSNLGDLSF-------LKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMG 291
A L+ + L F + A L+M +G ++A++Q + KRLLAY +++ G
Sbjct: 255 LAFFIPLVRVMPLVQEKFSLVWTITVGVIAALTMLYGNLVALVQKDVKRLLAYSSIAHSG 314
Query: 292 YILLGLSTGNVYG--ATLYSL-AHAMFKGGLFLGVGAIIDARKRKDL--KYLGSRNILLI 346
YI+ G + V G A +Y L A+A+ G FL + + + ++ + G R
Sbjct: 315 YIMAGAAVAKVIGMKAVIYFLVAYAVMSAGAFLVLALMEKNPEWQNYMENFYGLRFNAPY 374
Query: 347 VSIAILSLAISGLGI--TIGGVAKS 369
++ A ++ LG+ T+G V K+
Sbjct: 375 IAFAFFVYMVALLGVPPTVGFVGKA 399
>pir||C70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoM2 -
Aquifex aeolicus >gi|2983795|gb|AAC07353.1| (AE000737)
NADH dehydrogenase I chain M [Aquifex aeolicus]
Length = 501
Score = 94.0 bits (230), Expect = 3e-18
Identities = 114/442 (25%), Positives = 189/442 (41%), Gaps = 76/442 (17%)
Query: 10 PVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYP- 68
P +F++LI F + +F + L L + + F +R V+ Y
Sbjct: 18 PAVFAVLILFF---------KEKFAKYIALLGTGLTFLVSLIALFKFDFARDNVIQFYEE 68
Query: 69 ----REIGIEV--GLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLL-------LLM 115
+E+G+++ G+D +S L+ FL S + ++ + + K L LL
Sbjct: 69 YTILKELGVKLSLGMDGLS---LLMYFLTTLVSLIAVIWSIGDEKIKHRLKEYYIAFLLT 125
Query: 116 HSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILA 171
S +IG F + + FYVF EL+ + +I + +A+K+ + +S L+L
Sbjct: 126 ESFVIGVFTTFNLIVFYVFYELTLLPMLFVIGIWGYKLRLYSAYKFFVYIFISSLFLLLG 185
Query: 172 LGMI--------------YFQTGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVW 217
+ I Y + LN+ E+ L L I+ +K I P H W
Sbjct: 186 IASISTYHYKMNGSFTFEYLELLNLNIPNGFEIFL-----FLLFFIAFAVKTPIVPFHTW 240
Query: 218 LPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLG---DLSF-LKPFAILSMAFGVIMA- 272
LPDAH A T S +L+ I +K Y L+ N+G D + L P+ + + +IMA
Sbjct: 241 LPDAHGEAPTAGSVVLAAILLKMGTYALVRF-NIGLFPDAALELSPYLVALGIYSIIMAS 299
Query: 273 ---ILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLFLGVGAI 326
I Q N KR +AY +VS MG+++ N+ G + + AH + GLF+ G I
Sbjct: 300 WMTISQTNIKRFVAYSSVSHMGFVVTAAFLLNMEGLRASIIEMFAHGLTSAGLFMVAGYI 359
Query: 327 ID-------ARKRKDLKYLGSRNILLIVSIAILSLAISGL--GITIGGVAKSYLATTEKA 377
+ A R +K++ L A + A GL G + G + LA E +
Sbjct: 360 YNKLHTFNFASLRGAIKFMP----LFATITAATAFAAMGLPGGSSFWGKFLTILAAREYS 415
Query: 378 --IIYAVSFGTAFSFSKLNYYL 397
+ + V F FS + + Y+L
Sbjct: 416 TPLAFLVVFAAFFSAAYVLYFL 437
>pir||T12170 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
australis chloroplast (fragment)
>gi|2444412|gb|AAB71600.1| (AF020482) NADH
dehydrogenase-like protein [Gleditsia australis]
Length = 699
Score = 93.6 bits (229), Expect = 4e-18
Identities = 79/288 (27%), Positives = 133/288 (45%), Gaps = 33/288 (11%)
Query: 70 EIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAF 123
++ +E G +D ++S LI LV S Y+ + + + ++ ++G
Sbjct: 68 DLSLEFGYLIDSLTSIMLILITTVGILVLIYSDNYMSHDEGYLRFFAYMSFFNTSMLGLV 127
Query: 124 ISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLILALGMIYFQ 178
S + Y+F EL + SY LI A K + + + L+L + +Y+
Sbjct: 128 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGILGLYWI 187
Query: 179 TGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVWLPDAHSNAKT 227
TG L E+ L + + L ++L + K+ FPLHVWLPDA T
Sbjct: 188 TGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA-MEGPT 246
Query: 228 YVSSILSGIAVKAPIYGLILLSNLGDLSFLKP--------FAILSMAFGVIMAILQFNAK 279
+S+++ + A G+ L++ L L + P I+++ G +A+ Q + K
Sbjct: 247 PISALIHAATMVAA--GIFLVARLLPLFIVIPSIMNGIALIGIITVVLGATLALAQKDIK 304
Query: 280 RLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
R LAY T+SQ+GY++L L G+ A + + HA K LFLG G+II
Sbjct: 305 RSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSII 352
>pir||T12171 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
australis chloroplast (fragment)
>gi|2444414|gb|AAB71601.1| (AF020483) NADH
dehydrogenase-like protein [Gleditsia australis]
Length = 699
Score = 93.6 bits (229), Expect = 4e-18
Identities = 79/288 (27%), Positives = 133/288 (45%), Gaps = 33/288 (11%)
Query: 70 EIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAF 123
++ +E G +D ++S LI LV S Y+ + + + ++ ++G
Sbjct: 68 DLSLEFGYLIDSLTSIMLILITTVGILVLIYSDNYMSHDEGYLRFFAYMSFFNTSMLGLV 127
Query: 124 ISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLILALGMIYFQ 178
S + Y+F EL + SY LI A K + + + L+L + +Y+
Sbjct: 128 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGILGLYWI 187
Query: 179 TGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVWLPDAHSNAKT 227
TG L E+ L + + L ++L + K+ FPLHVWLPDA T
Sbjct: 188 TGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA-MEGPT 246
Query: 228 YVSSILSGIAVKAPIYGLILLSNLGDLSFLKP--------FAILSMAFGVIMAILQFNAK 279
+S+++ + A G+ L++ L L + P I+++ G +A+ Q + K
Sbjct: 247 PISALIHAATMVAA--GIFLVARLLPLFIVIPSIMNGIALIGIITVVLGATLALAQKDIK 304
Query: 280 RLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
R LAY T+SQ+GY++L L G+ A + + HA K LFLG G+II
Sbjct: 305 RSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSII 352
>pir||T12172 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
fera chloroplast (fragment) >gi|2444416|gb|AAB71602.1|
(AF020484) NADH dehydrogenase-like protein [Gleditsia
fera]
Length = 699
Score = 93.6 bits (229), Expect = 4e-18
Identities = 79/288 (27%), Positives = 133/288 (45%), Gaps = 33/288 (11%)
Query: 70 EIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAF 123
++ +E G +D ++S LI LV S Y+ + + + ++ ++G
Sbjct: 68 DLSLEFGYLIDSLTSIMLILITTVGILVLIYSDNYMSHDEGYLRFFAYMSFFNTSMLGLV 127
Query: 124 ISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLILALGMIYFQ 178
S + Y+F EL + SY LI A K + + + L+L + +Y+
Sbjct: 128 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGILGLYWI 187
Query: 179 TGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVWLPDAHSNAKT 227
TG L E+ L + + L ++L + K+ FPLHVWLPDA T
Sbjct: 188 TGSLEFRNLFEILNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA-MEGPT 246
Query: 228 YVSSILSGIAVKAPIYGLILLSNLGDLSFLKP--------FAILSMAFGVIMAILQFNAK 279
+S+++ + A G+ L++ L L + P I+++ G +A+ Q + K
Sbjct: 247 PISALIHAATMVAA--GIFLVARLLPLFIVIPSIMNGIALIGIITVVLGATLALAQKDIK 304
Query: 280 RLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
R LAY T+SQ+GY++L L G+ A + + HA K LFLG G+II
Sbjct: 305 RSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSII 352
>pir||T12173 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
microphylla chloroplast (fragment)
>gi|2444418|gb|AAB71603.1| (AF020485) NADH
dehydrogenase-like protein [Gleditsia microphylla]
Length = 699
Score = 93.6 bits (229), Expect = 4e-18
Identities = 79/288 (27%), Positives = 133/288 (45%), Gaps = 33/288 (11%)
Query: 70 EIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAF 123
++ +E G +D ++S LI LV S Y+ + + + ++ ++G
Sbjct: 68 DLSLEFGYLIDSLTSIMLILITTVGILVLIYSDNYMSHDEGYLRFFAYMSFFNTSMLGLV 127
Query: 124 ISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLILALGMIYFQ 178
S + Y+F EL + SY LI A K + + + L+L + +Y+
Sbjct: 128 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGILGLYWI 187
Query: 179 TGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVWLPDAHSNAKT 227
TG L E+ L + + L ++L + K+ FPLHVWLPDA T
Sbjct: 188 TGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA-MEGPT 246
Query: 228 YVSSILSGIAVKAPIYGLILLSNLGDLSFLKP--------FAILSMAFGVIMAILQFNAK 279
+S+++ + A G+ L++ L L + P I+++ G +A+ Q + K
Sbjct: 247 PISALIHAATMVAA--GIFLVARLLPLFIVIPSIMNGIALIGIITVVLGATLALAQKDIK 304
Query: 280 RLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
R LAY T+SQ+GY++L L G+ A + + HA K LFLG G+II
Sbjct: 305 RSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSII 352
>pir||H75389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 [similarity] -
Deinococcus radiodurans (strain R1)
>gi|6459250|gb|AAF11056.1|AE001993_6 (AE001993) NADH
dehydrogenase I, M subunit [Deinococcus radiodurans]
Length = 474
Score = 93.2 bits (228), Expect = 6e-18
Identities = 94/325 (28%), Positives = 151/325 (45%), Gaps = 31/325 (9%)
Query: 68 PREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTN-WKELSLLLLMHSGLIGAFISK 126
P + V L+ V F + + + Y +RV N L+++L M +GL+G F ++
Sbjct: 58 PLGVTYAVELNGVGLAFALVTAFMTLMAVWYAARRVPNPGPMLAMVLAMETGLLGIFAAR 117
Query: 127 DYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIYFQTGY----- 181
D FYVF E + + S ++A + L+ A+Y L+ +L M+ GY
Sbjct: 118 DLILFYVFFEWALIPSLLMLAVYGGPHRMRALV--KFAAYTLLGSLFMLLSFIGYKWLGG 175
Query: 182 -----LNVELASEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAH-SNAKTYVSSILS 234
L LA VG T L L + ++ +K ++PLH WLPD H N ++ + ++
Sbjct: 176 SPTFALPDLLAHPVGGVAQTWLYLGFLAAMAVKLPLWPLHAWLPDFHEQNHESGIPDVM- 234
Query: 235 GIAVKAPIYGLIL--LSNLGDLSF-LKPFAILSMAFGVI----MAILQFNAKRLLAYHTV 287
G K YG+ + L+ D S L+P + AF + +A Q N KRLLAY +
Sbjct: 235 GTLYKVGGYGIFVFGLTLFPDASLELRPVLMALAAFTALYAAWIAFGQTNWKRLLAYAGL 294
Query: 288 SQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNIL 344
S MG++ LGL + N V GA ++ G LF+ VG + + D + G N
Sbjct: 295 SHMGFVALGLFSMNETAVIGAMYLLAFQNLYTGALFMAVGMLQERVGSLDTRVGGVMNQA 354
Query: 345 -----LIVSIAILSLAISGLGITIG 364
L +++ S+A+ GL +G
Sbjct: 355 GALGGLTLALWFASIAVPGLAGFVG 379
>gi|5834920 NADH dehydrogenase subunit 4 [Anopheles gambiae]
>gi|464237|sp|P34852|NU4M_ANOGA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4 >gi|7432317|pir||T09809 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
African malaria mosquito mitochondrion
>gi|309065|gb|AAD12198.1| (L20934) NADH dehydrogenase
subunit 4 [Anopheles gambiae]
Length = 447
Score = 92.8 bits (227), Expect = 8e-18
Identities = 87/313 (27%), Positives = 149/313 (46%), Gaps = 23/313 (7%)
Query: 29 FRARFRLPLTYEVKALYLLG--VFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLI 86
F F PL++ + + +FL +F ++ + Y I GLD VS ++
Sbjct: 6 FMLMFMFPLSFLKNFYWTVQNLIFLLTFMFMINLSSL--NYFNYISYYFGLDMVSYGLIL 63
Query: 87 AEFLVFGASSLYLVK--RVTNWKELS--LLLLMHSGLIGAFISKDYFNFYVFMELSAVSS 142
F + G + K N+++L ++L + L+ F S F FY+F E S + +
Sbjct: 64 LSFWICGLMLMASEKVFSTNNYEKLFVFMILFLLFMLVLTFSSMSVFMFYLFFEASLIPT 123
Query: 143 YALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTP 197
LI +R A YLL ++ AS L++ + I L+ L +
Sbjct: 124 LFLILGWGYQPERLQAGVYLLFYTLLASLPLLIGIFYILNSKNTLSFTLLLNYSFSNFNL 183
Query: 198 LRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF 256
L L+ + + ++K +F +H+WLP AH A S IL+GI +K YGL+ + +L +S
Sbjct: 184 LYLSLVFAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGILLKLGGYGLLRMFSLLQISG 243
Query: 257 LKP---FAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYGAT---L 307
+K + +S+ GV+++++ Q + K L+AY +V+ MG +L GL T +G T
Sbjct: 244 VKYNYWWISISLVGGVLISLVCLRQTDLKALIAYSSVAHMGIVLSGLLTMTYWGLTGSYA 303
Query: 308 YSLAHAMFKGGLF 320
+AH + GLF
Sbjct: 304 LMIAHGLCSSGLF 316
>pir||T12401 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - Sarcophyton
glaucum mitochondrion >gi|4091917|gb|AAC99651.1|
(AF064823) NADH dehydrogenase subunit 4 [Sarcophyton
glaucum]
Length = 495
Score = 92.8 bits (227), Expect = 8e-18
Identities = 85/387 (21%), Positives = 167/387 (42%), Gaps = 61/387 (15%)
Query: 36 PLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGAS 95
P+ + + + + V L LL P+ + + W S FL+ +F++
Sbjct: 88 PILFAIDGISIFFVILSTLLTPIC---------------ILVSWNSIRFLLKDFIM---- 128
Query: 96 SLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQD 150
LL M LIG F + D FYV E + + +I ++
Sbjct: 129 ---------------CLLGMELLLIGVFSTLDLLIFYVLFESILIPMFLIIGVWGARAEK 173
Query: 151 REAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAA---ISLIL 207
+AA+ + ++ S +++L++ IY TG + + + + + + L +SL +
Sbjct: 174 IKAAYYFFFYTLVGSVLMLLSIAAIYRITGTTDYLSLTHIQIDSNIQIWLFIGFFLSLAV 233
Query: 208 KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLS---NLGDLSFLKP----F 260
K + P H+WLP AH A S IL+GI +K YG I + +L P
Sbjct: 234 KIPMVPFHIWLPLAHVEAPLAGSVILAGILLKLGGYGFIRFAWPLFPEATHYLAPVILTL 293
Query: 261 AILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKG 317
+++++ +G + Q +AKRL+AY +V+ MG + +GL T + G + +AH +
Sbjct: 294 SLIAVLYGSLTTCRQVDAKRLIAYSSVAHMGIVTIGLFTHTMEGLIASIFLMIAHGVVSP 353
Query: 318 GLFLGVGAIIDARKRKDLKYL-GSRNILLIVSIAILSLAISGLGITIG--------GVAK 368
LF+ V + + + ++Y G+ + + SI + ++ + + + +
Sbjct: 354 ALFVAVNLLYERHHTRLIRYYKGAVVSMPLFSIIFMVFTLANIAVPLSCNFVGEFLSLVA 413
Query: 369 SYLATTEKAIIYAVSFGTAFSFSKLNY 395
++ +T I+ + S A ++S Y
Sbjct: 414 AFSTSTSLGILTSTSMVIAAAYSLYLY 440
>gb|AAD28444.1|AF126026_1 (AF126026) NADH dehydrogenase subunit 2 [Brassica napus]
Length = 510
Score = 92.8 bits (227), Expect = 8e-18
Identities = 82/324 (25%), Positives = 142/324 (43%), Gaps = 42/324 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L + EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGA 189
Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
+S L+ +Y +G +N ++ + G+ L + + K +
Sbjct: 190 SSSTLVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSLA 247
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
P H W PD + + T V + LS V + + L + + D+ F L+ AI
Sbjct: 248 PSHQWTPDVYQGSPTPVVAFLS---VTSKVAASALATRIFDIPFYFSSNEWHLLLEILAI 304
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
LSM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ G + + +F + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYISMNLG 364
Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
A I +D L +++ L +S+A+ L++ GL G K +L
Sbjct: 365 TFACIILFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCG 424
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
+ + VS G S + YYL
Sbjct: 425 WRAGLYFLVSIGLLTSVLSIYYYL 448
>gb|AAG12229.1| (AF163463) NADH dehydrogenase subunit F [Schoenoxiphium burkei]
Length = 593
Score = 92.8 bits (227), Expect = 8e-18
Identities = 82/325 (25%), Positives = 143/325 (43%), Gaps = 37/325 (11%)
Query: 112 LLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASY 166
L L ++ ++G S + Y+F E+ + SY LI A K L + +
Sbjct: 19 LNLFNASMLGLVTSSNLIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFLTNRVGDF 78
Query: 167 VLILALGMIYFQTGYLNVELASEV-----------GLRDDTPLRLAAISLILKAGIFPLH 215
L+L + Y+ G E+ L L + I K+ FPLH
Sbjct: 79 GLLLGILGFYWIIGSFEFRDLFEITKNLIQKNGVNSLFTTLCTFLLFVGAIAKSAQFPLH 138
Query: 216 VWLPDAHSNAKTYVSSIL-------SGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFG 268
+WLPDA T +S+++ +G+ + A ++ L+L++ + + ++++ G
Sbjct: 139 IWLPDA-MEGPTPISALIHAATMVAAGVFLVARLFPLLLITP-NIMHIISSIGLITLFLG 196
Query: 269 VIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIID 328
+A+ Q + KR LAY T+SQ+GYI+L L G+ A + + HA K LFLG G+II
Sbjct: 197 ATLALAQIDIKRSLAYSTISQLGYIILALGIGSSRTALFHLITHAXSKALLFLGSGSIIH 256
Query: 329 AR---------KRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAI 378
+ K +++ ++G + I A L +S GI S +
Sbjct: 257 SMEPVVGYSPYKNQNMVFMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSKDEILSNSW 316
Query: 379 IYAVSFG--TAFSFSKLNYYLWKGY 401
+Y+ FG T F+ +Y+++ Y
Sbjct: 317 LYSPIFGIITYFTTGLTAFYMFRVY 341
>gi|11467594 NADH dehydrogenase, subunit 2 [Allomyces macrogynus]
>gi|2147777|pir||S63658 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 2 - Allomyces macrogynus
mitochondrion >gi|1236424|gb|AAC49241.1| (U41288) NADH
dehydrogenase, subunit 2 [Allomyces macrogynus]
Length = 474
Score = 92.4 bits (226), Expect = 1e-17
Identities = 78/291 (26%), Positives = 138/291 (46%), Gaps = 36/291 (12%)
Query: 118 GLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAA---FKYLLLSMTASYVLILALGM 174
G+I S D + ++ +EL ++S Y + +EA KY LL +S + +L L +
Sbjct: 99 GMITLIFSYDLISTFLAIELQSLSLYVIATMTRKEATAAGLKYFLLGSLSSAIFLLGLVL 158
Query: 175 IYFQTGY-----------LNVELASEVGLRDDTPLR-------LAAISLILKAGIFPLHV 216
IY TG ++ + A V L D + L A+ L++K G P H
Sbjct: 159 IYSLTGITQYDGYNILMSIDHDKAVSVFLGDSEYNKFILLGTVLIAVGLLVKVGAAPFHN 218
Query: 217 WLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF-LKPF------AILSMAFGV 269
W PD + N T ++S L+ + + + ++++ + GD+ + L+ F AILS+ G
Sbjct: 219 WAPDVYDNVPTLITSWLAIMGKLSILSFILIIKSTGDIGYQLESFTLLTLSAILSLFIGS 278
Query: 270 IMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFL-GVGAIID 328
I+ + Q KRLLAY ++S +G++L+G+S + G + S MF+ + L + AI+
Sbjct: 279 ILGLTQHRIKRLLAYSSISHLGFLLIGMSIDS--GLAVSSFLFYMFQYWISLCCIFAILI 336
Query: 329 ARKRKDLKYLGS-----RNILLIVSIAILSLAISGLGITIGGVAKSYLATT 374
++ DL + + N L I +++G+ IG K + T
Sbjct: 337 YNQQSDLTSIAALTTIRSNPALAFVFIIHLFSLTGIPPLIGFFGKQMILYT 387
>gb|AAG19078.1| (AE005006) Vng0560c [Halobacterium sp. NRC-1]
Length = 594
Score = 92.4 bits (226), Expect = 1e-17
Identities = 81/307 (26%), Positives = 136/307 (43%), Gaps = 31/307 (10%)
Query: 120 IGAFISKDYFNFYVFMELSAVSSYALI---ASQDREAAFKYLLLSMTASYVLILALGMIY 176
+GA + D+ F EL A +S L+ + A F+Y L +L+ A+ +
Sbjct: 108 LGAVFAGDWLTLIFFWELMAATSTLLVWHYGGKAVRAGFRYALAHGIGGTLLLAAIIWQF 167
Query: 177 FQTG---YLNVELASEV-GLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSI 232
+TG + +V E GL LAA+ + + G LH WLPD + S
Sbjct: 168 AETGTFLFGSVPGGPETAGLAGSIAPVLAALGIGVNVGFVGLHAWLPDTYPRPHIAASVF 227
Query: 233 LSGIAVKAPIYGLI-LLSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMG 291
L K +YGL + G+++ +++ FG +MA+ Q + +RLL+YH SQ+G
Sbjct: 228 LCVFTTKTGVYGLYRVFPEHGNMAVAYMGGAMAV-FGAMMALFQNDMRRLLSYHIQSQVG 286
Query: 292 YILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLG--SRNILLI 346
Y++ G+ G+ GA + H ++KG LF+ G I+ + L LG +R + +
Sbjct: 287 YMVAGVGIGSALAQAGAFAHVFNHILYKGLLFMTAGVIVYRTGEERLPKLGGLAREMPIT 346
Query: 347 V-SIAILSLAISGLGITIGGVAKSYLATTE----------------KAIIYAVSFGTAFS 389
+ + +L+ISG G V+K + + + ++ GT S
Sbjct: 347 AGAFTVAALSISGFPGFNGFVSKGIIISASHYMHAPLVTVGEFTGLQVLLLLGGVGTFMS 406
Query: 390 FSKLNYY 396
F K YY
Sbjct: 407 FIKFGYY 413
>gi|5834838 NADH dehydrogenase subunit 4 [Drosophila yakuba]
>gi|128746|sp|P07707|NU4M_DROYA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4 >gi|85265|pir||I25797 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - fruit
fly (Drosophila yakuba) mitochondrion
>gi|12932|emb|CAA26993.1| (X03240) NADH dehydrogenase
(ubiquinone) chain 4 [Drosophila yakuba]
Length = 446
Score = 92.1 bits (225), Expect = 1e-17
Identities = 83/297 (27%), Positives = 139/297 (45%), Gaps = 26/297 (8%)
Query: 67 YPREIGIEVGLDWVSSTFLIAEFLVFGASSLYL--VKRVTNWKELSLL--LLMHSGLIGA 122
Y EI +G D +S ++ + L + + N+K L LL +++ L+
Sbjct: 44 YWSEISYFLGCDMLSYGLVLLSLWICSLMLLASESINKYNNYKNLFLLNIVILLLLLVLT 103
Query: 123 FISKDYFNFYVFMELSAVSSYALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYF 177
F S F FY+F E S + + LI +R A YLL ++ S +++ + +
Sbjct: 104 FSSMSLFMFYLFFESSLIPTLFLILGWGYQPERLQAGVYLLFYTLLVSLPMLIGIFYVMN 163
Query: 178 QTGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIA 237
+TG +N L + D + ++K +F +H+WLP AH A S IL+GI
Sbjct: 164 KTGSMNFYLMNNFMFNYDLLYFCLLCAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIM 223
Query: 238 VKAPIYGLILLSNLGDLSFLK---PFAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMG 291
+K YGL+ + N L LK + +S+ GV+M+++ Q + K L+AY +V+ MG
Sbjct: 224 LKLGGYGLLRVINFLQLMNLKYSFVWISISLVGGVLMSLVCLRQTDLKALIAYSSVAHMG 283
Query: 292 YILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
+L GL T + G+ +AH + GLF + LGSR++L+
Sbjct: 284 IVLAGLLTMTYWGLCGSYTLMIAHGLCSSGLF--------CLANVSYERLGSRSMLI 332
>sp|Q10880|Y051_MYCTU HYPOTHETICAL 65.6 KD PROTEIN RV0083 >gi|7446811|pir||D70850
probable oxidoreductase subunit - Mycobacterium
tuberculosis (strain H37RV) >gi|3261515|emb|CAA16264.1|
(AL021428) hypothetical protein Rv0083 [Mycobacterium
tuberculosis]
Length = 640
Score = 92.1 bits (225), Expect = 1e-17
Identities = 97/369 (26%), Positives = 154/369 (41%), Gaps = 64/369 (17%)
Query: 46 LLGVFLPML------LFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYL 99
LLG+F P+ L PLS G+ + LD + F+ V YL
Sbjct: 24 LLGMFGPVRVVHVGWLLPLS------------GVHIELDRLGGFFMALTGAVAAPVGCYL 71
Query: 100 VKRVTNWK----ELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS-----QD 150
+ V ++++ L + ++ + F + EL A++S L+ S Q
Sbjct: 72 IGYVRREHLGRVPMAVVPLFVAAMLLVPAAGSVTTFLLAWELMAIASLILVLSEHARPQV 131
Query: 151 REAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLI---L 207
R A Y + MT + + +G++ + A + D + ++L+
Sbjct: 132 RSAGLWYAV--MTQLGFIAILVGLVVLAAAGGSDRFAGLGAVCDGVRAAVFMLTLVGFGS 189
Query: 208 KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKP------FA 261
KAG+ PLH WLP AH A + VS+++S V IYG++ DL L P A
Sbjct: 190 KAGLVPLHAWLPRAHPEAPSPVSALMSAAMVNLGIYGIVRF----DLQLLGPGPRWWGLA 245
Query: 262 IL-----SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVY------------- 303
+L S +GV+ A + + KRLLAY T MG I L L ++
Sbjct: 246 LLAVGGTSALYGVLQASVAADLKRLLAYSTTENMGLITLALGAATLFADTGAYGPASIAA 305
Query: 304 -GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS---RNILLIVSIAILSLAISGL 359
A L+ +AHA FK F+ G+++ A +DL LG R V + +L GL
Sbjct: 306 AAAMLHMIAHAAFKSLAFMAAGSVLAATGLRDLDLLGGLARRMPATTVFFGVAALGACGL 365
Query: 360 GITIGGVAK 368
+ G V++
Sbjct: 366 PLGAGFVSE 374
>gi|11466835 NADH dehydrogenase ND2 [Oryza sativa] >gi|11466862|ref|NP_039459.1|
NADH dehydrogenase ND2 [Oryza sativa]
>gi|128657|sp|P12125|NU2C_ORYSA NADH-PLASTOQUINONE
OXIDOREDUCTASE CHAIN 2, CHLOROPLAST
>gi|66149|pir||DERZN2 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 2 - rice chloroplast
>gi|669085|emb|CAA33941.1| (X15901) NADH dehydrogenase
ND2 [Oryza sativa] >gi|669089|emb|CAA33920.1| (X15901)
NADH dehydrogenase ND2 [Oryza sativa]
>gi|226656|prf||1603356CG NADH dehydrogenase ND2 [Oryza
sativa]
Length = 510
Score = 91.7 bits (224), Expect = 2e-17
Identities = 85/323 (26%), Positives = 144/323 (44%), Gaps = 40/323 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L R EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGA 189
Query: 164 ASYVLILALGMIYFQTGYLNVELASEVG------LRDDTPLRLAAISLILKAGI----FP 213
+S +L+ +Y +G +EL V + + + +A IS+ + G P
Sbjct: 190 SSSILVHGFSWLYGSSGG-EIELQEIVNGLINTQMYNSPGISIALISITVGLGFKLSPAP 248
Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAIL 263
H W PD + + T V + LS V + + + + D+ F L+ AIL
Sbjct: 249 FHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRILDIPFYFSSNEWHLLLEILAIL 305
Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGV 323
SM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ + + +F + LG
Sbjct: 306 SMILGNLLAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGT 365
Query: 324 GAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATT 374
A I +D L +++ L +S+A+ L++ GL G K YL
Sbjct: 366 FACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCGW 425
Query: 375 EKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 426 QAGLYFLVSIGLLTSVLSIYYYL 448
>emb|CAB59307.1| (AJ236287) NADH dehydrogenase subunit F [Carphalea glaucescens]
Length = 733
Score = 91.7 bits (224), Expect = 2e-17
Identities = 93/334 (27%), Positives = 158/334 (46%), Gaps = 52/334 (15%)
Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVL 168
L + ++G S + Y+F EL V SY LI A K + + + L
Sbjct: 130 LFSTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGL 189
Query: 169 ILALGMIYFQTG----------YLNVELASEVGLRDDTPLRLAAISL----ILKAGIFPL 214
+L + ++ TG + N+ +A+EV T L A+ L + K+ FPL
Sbjct: 190 LLGILGFFWITGSFEFRDLFEIFNNLIVANEVSFVFVT---LCAVLLFAGAVAKSAQFPL 246
Query: 215 HVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMA 266
HVWLPDA T +S+++ A G+ L++ L L + P+ I+++
Sbjct: 247 HVWLPDA-MEGPTPISALIH--AATMVXXGIFLVARLLPLFIVIPYIMNSISLIGIVTLL 303
Query: 267 FGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAI 326
G +A+ Q + KR LAY T+SQ+GY++L L G+ A + + HA K LFLG G+I
Sbjct: 304 LGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSI 363
Query: 327 IDA---------RKRKDLKYLG--SRNILLIVSIAIL-SLAISGLGITIGGVAK------ 368
I + K +++ +G ++++ L S ++ +L+I G+ +K
Sbjct: 364 IHSMETVVGYSPHKSQNMALMGGLTKHVPLTKSTFLVGTLSICGIPPLACFWSKDEILTD 423
Query: 369 SYLATTEKAIIYAVSFG-TAFSFSKLNYYLWKGY 401
S+L +T AII V+ G TAF ++ ++G+
Sbjct: 424 SWLYSTSFAIIAWVTAGLTAFYMFRIYLLTFEGH 457
>emb|CAC12089.1| (AL445066) NADH dehydrogenase, chain M related protein
[Thermoplasma acidophilum]
Length = 503
Score = 91.3 bits (223), Expect = 2e-17
Identities = 116/481 (24%), Positives = 203/481 (42%), Gaps = 68/481 (14%)
Query: 1 MNAVIMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKA--LYLLGVFLPMLLFPL 58
M A ++I +IF + + G + E T V + L +L +L F
Sbjct: 9 MFAFYILIISIIFGIAAFFTGRYAKE-----------TASVLSGILLILIAAFSILRFSS 57
Query: 59 SRGGVVGGYP----REIGI--EVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLL 112
GG + Y R IG+ VG+ ++ LI +V S L + R L
Sbjct: 58 YSGGFISQYSITISRSIGLYFSVGVSGLTDALLILTGIVMLVSIL-ITDRKYGSVFFGLE 116
Query: 113 LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVL 168
+L+ GLIG IS+D+ FY+F EL V Y +I R+ + K+ + + S +
Sbjct: 117 MLVEVGLIGLLISRDFLFFYIFWELVLVPVYFMIGRYGRDNKDSISLKFFVYTHIGSVFI 176
Query: 169 ILALGMIYFQT----GYLNVELASEVGLRDDTPLRLAAISL-------ILKAGIFPLHVW 217
+L++ +Y + GY E+ + + P+ L ++K FP+H W
Sbjct: 177 LLSIFTLYSYSFSYLGYYTFEIGPLMSIVHSLPVFELGFVLFGFLFGFLVKMPSFPIHSW 236
Query: 218 LPDAHSNAKTYVSSILSGIAVKAPIYGL--ILLS-----NLGDLSFLKPFAILSMAFGVI 270
LPD++ +A + IL+G YGL IL+ L L L+ I+S+ + +
Sbjct: 237 LPDSYYSAPYPATVILAGAISMMGGYGLFGILMEAYSAIPLWVLYILEALGIMSIIYFAL 296
Query: 271 MAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATL-YSLAHAMFKGGLF--LGVGAI- 326
A+ Q N K+++A+ + S MG++ L + + + + YS+ + GG+F + G I
Sbjct: 297 TAMFQRNIKKMMAFASASAMGFVTLSFAASIIESSGVDYSVKYIEAAGGMFQIVAHGLIM 356
Query: 327 ---------IDARKRKDLKY-LGS--RNILLIVSIAIL----SLAISGLGITIGGVAKSY 370
I+ + D Y LG R ++ S +++ SL + G IG S
Sbjct: 357 ALVFSALYYINRNTKTDSVYGLGGIYREAPMLASFSLIGFLASLGLPGFAGFIGEF--SI 414
Query: 371 LATTEKAIIYAVSFGTAFSFSKLNYYLWKG----YGNEPTNFSILPSLTLGVLTVLVGIE 426
+ +AI + + F +Y++W YG N + + + +LV +
Sbjct: 415 VVGVFQAISWYIFFVIFGMIITASYHIWTAQRSLYGPYNENLGFIRDVRVSEFLILVFLV 474
Query: 427 L 427
L
Sbjct: 475 L 475
>sp|Q55429|NU5C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >gi|7432381|pir||S75795
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5.2 -
Synechocystis sp. (strain PCC 6803)
>gi|1001283|dbj|BAA10530.1| (D64003) NADH dehydrogenase
subunit 5 [Synechocystis sp.]
Length = 681
Score = 90.9 bits (222), Expect = 3e-17
Identities = 93/329 (28%), Positives = 153/329 (46%), Gaps = 45/329 (13%)
Query: 112 LLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS-QDREAAF----KYLLLSMTASY 166
L L S ++G IS + Y+F EL + SY LI DR+AA K + + +
Sbjct: 128 LSLFASSMLGLVISPNLVQVYIFWELVGMCSYLLIGFWYDRKAAADACQKAFVTNRVGDF 187
Query: 167 VLILALGMIYFQTGYLNVELASE--VGLRDDTPLR--LAAISLIL-------KAGIFPLH 215
L+L + +Y+ TG + E GL L +AAI IL K+ FPLH
Sbjct: 188 GLLLGILGLYWATGSFDFGTIGERLEGLVSSGVLSGAIAAILAILVFLGPVAKSAQFPLH 247
Query: 216 VWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAF-------- 267
VWLPDA T +S+++ + A G+ L++ + + P + ++AF
Sbjct: 248 VWLPDA-MEGPTPISALIHAATMVAA--GVFLVARMYPVFEPIPVVMNTIAFTGCFTAFL 304
Query: 268 GVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
G +A+ Q + K+ LAY T+SQ+GY+++ + G + + HA FK LFL G++I
Sbjct: 305 GATIALTQNDIKKGLAYSTISQLGYMVMAMGIGAYSAGLFHLMTHAYFKAMLFLCSGSVI 364
Query: 328 ---------DARKRKDLKYLGS-RNILLIVSIAIL--SLAISGLGITIGGVAKSY---LA 372
D +D++ +G R + I + L +LAI G+ G +K LA
Sbjct: 365 HGMEGVVGHDPILAQDMRIMGGLRKYMPITATCFLIGTLAICGIPPFAGFWSKDEILGLA 424
Query: 373 TTEKAIIYAVSFGTAFSFSKLNYYLWKGY 401
+++ V + TA +Y+++ Y
Sbjct: 425 FQANPLLWFVGWATA---GMTAFYMFRMY 450
>pir||S65075 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - barley
chloroplast >gi|1223748|emb|CAA62222.1| (X90650) ndhB
[Hordeum vulgare]
Length = 510
Score = 90.9 bits (222), Expect = 3e-17
Identities = 85/323 (26%), Positives = 143/323 (43%), Gaps = 40/323 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L R EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGA 189
Query: 164 ASYVLILALGMIYFQTGYLNVELASEVG------LRDDTPLRLAAISLILKAGI----FP 213
+S +L+ +Y +G +EL V + + + +A IS+ + G P
Sbjct: 190 SSSILVHGFSWLYGSSGG-EIELQEIVNGLINTQMYNSPGISIALISITVGLGFKLSPAP 248
Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAIL 263
H W PD + + T V + LS V + + + + D+ F L+ AIL
Sbjct: 249 FHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRILDIPFYFSSNEWHLLLEILAIL 305
Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGV 323
SM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ + + +F + LG
Sbjct: 306 SMILGNLLAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGT 365
Query: 324 GAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATT 374
A I +D L ++ L +S+A+ L++ GL G K YL
Sbjct: 366 FACIVLFGLRTGTDNIRDYAGLYMKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCGW 425
Query: 375 EKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 426 QAGLYFLVSIGLLTSVLSIYYYL 448
>gi|9653248 NADH dehydrogenase subunit 2 [Chondrus crispus]
>gi|1352546|sp|P48903|NU2M_CHOCR NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 2 >gi|7432023|pir||S59103 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - red
alga (Chondrus crispus) mitochondrion
>gi|1334497|emb|CAA87619.1| (Z47547) NADH dehydrogenase
(ubiquinone), subunit 2 [Chondrus crispus]
Length = 497
Score = 90.9 bits (222), Expect = 3e-17
Identities = 81/345 (23%), Positives = 154/345 (44%), Gaps = 52/345 (15%)
Query: 77 LDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFME 136
L W+ TF + +R+ +++ L+LL ++ S D Y+ +E
Sbjct: 94 LGWILITFSYINY-----------ERINSFEYWILILLAIVAILFIIQSYDLLTMYLSIE 142
Query: 137 LSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLILALGMIYFQTGYLN-------- 183
++ Y L + + EA KY +L +S +L+ +IY TG N
Sbjct: 143 FQSLIFYILASFKRTSEFSTEAGLKYFVLGAFSSGLLLFGSSLIYGLTGLTNFLDLAKFF 202
Query: 184 -----VELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVS---SILSG 235
+EL+S +GL T L +SL+ K P H+W PD + + T ++ SI+
Sbjct: 203 TGMPMLELSSWIGLT--TGFTLILVSLLFKLSAAPFHMWAPDVYEGSPTSITLFFSIMPK 260
Query: 236 IAVKAPIYGLILLSNLGDLSFLKPFAILSMAF----GVIMAILQFNAKRLLAYHTVSQMG 291
+A+ + + L++LS ++F + ++ + F G + A Q KR +AY ++S +G
Sbjct: 261 LAILSLLLKLLILSFHDFITFWRIIILICIIFSIMIGTLSAFSQIKWKRFIAYSSISHVG 320
Query: 292 YILLGLSTGNVYG---ATLYSLAHAMFKGGLFLGVGAI--------IDARKRKDLKYLGS 340
+ LL + +GN+ G + Y + + + G+F + + R +DL L
Sbjct: 321 FFLLAILSGNLEGISSSIFYVIIYVITMLGIFSFILTLRFYNYSYHYQTRYLQDLISLSR 380
Query: 341 RNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYAVSFG 385
N L +S+ + +++G+ G AK ++ +++ SFG
Sbjct: 381 FNPALAISLTLFLFSMAGIPPLGGFFAKLFVLL---SVLQTKSFG 422
>sp|P72714|NU2C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 2 >gi|7431989|pir||S74569
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 -
Synechocystis sp. (strain PCC 6803)
>gi|1651794|dbj|BAA16721.1| (D90900) NADH dehydrogenase
subunit 2 [Synechocystis sp.]
Length = 521
Score = 90.9 bits (222), Expect = 3e-17
Identities = 94/378 (24%), Positives = 166/378 (43%), Gaps = 63/378 (16%)
Query: 111 LLLLMHSGLIGAFIS--KDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
+ +L+ + L G F+S + ++ +E+ ++SSY + R EAA KYLL+ +
Sbjct: 114 IAILLTATLGGMFLSAANELVMVFISLEMLSISSYLMTGYMKRDPRSNEAALKYLLIGAS 173
Query: 164 ASYVLILALGMIY-FQTGYLNVELASEVGLRDDT---PLRLAAISLILKAGI------FP 213
+S + + L ++Y G + L +E + DT L LA + + AGI P
Sbjct: 174 SSAIFLYGLSLLYGLSGGETQLVLIAEKLVNADTVGQSLGLAIALVFVIAGIAFKISAVP 233
Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGL---ILLSNLGDLS-----FLKPFAILSM 265
H W PD + + T V + LS + KA + + +L++ G ++ A+LSM
Sbjct: 234 FHQWTPDVYEGSPTPVVAFLS-VGSKAAGFAVAIRLLVTAFGGITDEWHVIFTALAVLSM 292
Query: 266 AFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLFLG 322
G ++A+ Q + KR+LAY ++ Q G++++GL G+ G Y L + LF+
Sbjct: 293 VLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGSEDGYASMVFYMLIY------LFMN 346
Query: 323 VGAI---------IDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL-- 371
+GA + + D L ++ LL + ++I L++ G+ G K Y+
Sbjct: 347 LGAFSCIILFTLRTGSDQISDYAGLYHKDPLLTLGLSICLLSLGGIPPLAGFFGKIYIFW 406
Query: 372 ATTEKAIIYAVSFGTAFSFSKLNYYL-----------------WKGYGNEPTNFSILPSL 414
A + + V G S + YY+ K Y N + L
Sbjct: 407 AGWQSGLYGLVLLGLVTSVVSIYYYIRVVKMMVVKEPQEMSEVIKNYPAIKWNLPGMRPL 466
Query: 415 TLGVLTVLVGIELGGKLS 432
+G++ LV L G L+
Sbjct: 467 QVGIVATLVATSLAGILA 484
>pir||A39366 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 -
Synechocystis sp. (PCC 6803) >gi|217097|dbj|BAA14330.1|
(D90288) ORF for 55kD protein [Synechocystis sp.]
Length = 521
Score = 90.5 bits (221), Expect = 4e-17
Identities = 94/378 (24%), Positives = 166/378 (43%), Gaps = 63/378 (16%)
Query: 111 LLLLMHSGLIGAFIS--KDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
+ +L+ + L G F+S + ++ +E+ ++SSY + R EAA KYLL+ +
Sbjct: 114 IAILLTATLGGMFLSAANELVMVFISLEMLSISSYLMTGYMKRDPRSNEAALKYLLIGAS 173
Query: 164 ASYVLILALGMIY-FQTGYLNVELASEVGLRDDT---PLRLAAISLILKAGI------FP 213
+S + + L ++Y G + L +E + DT L LA + + AGI P
Sbjct: 174 SSAIFLYGLSLLYGLSGGETQLVLIAEKLVNADTVGQSLGLAIALVFVIAGIAFKISAVP 233
Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGL---ILLSNLGDLS-----FLKPFAILSM 265
H W PD + + T V + LS + KA + + +L++ G ++ A+LSM
Sbjct: 234 FHQWTPDVYEGSPTPVVAFLS-VGSKAAGFAVAIRLLVTAFGGITDEWHVIFTALAVLSM 292
Query: 266 AFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLFLG 322
G ++A+ Q + KR+LAY ++ Q G++++GL G+ G Y L + LF+
Sbjct: 293 VLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGSEDGYASMVFYMLIY------LFMN 346
Query: 323 VGAI---------IDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL-- 371
+GA + + D L ++ LL + ++I L++ G+ G K Y+
Sbjct: 347 LGAFSCIILFTLRTGSDQISDYAGLYHKDPLLTLGLSICLLSLGGIPPLAGFFGKIYIFW 406
Query: 372 ATTEKAIIYAVSFGTAFSFSKLNYYL-----------------WKGYGNEPTNFSILPSL 414
A + + V G S + YY+ K Y N + L
Sbjct: 407 AGWQSRLYGLVLLGLVTSVVSIYYYIRVVKMMVVKEPQEMSEVIKNYPAIKWNLPGMRPL 466
Query: 415 TLGVLTVLVGIELGGKLS 432
+G++ LV L G L+
Sbjct: 467 QVGIVATLVATSLAGILA 484
>pir||T34612 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 [similarity] -
Streptomyces coelicolor >gi|5042265|emb|CAB44519.1|
(AL078618) nuoM, NADH dehydrogenase subunit
[Streptomyces coelicolor]
Length = 523
Score = 90.5 bits (221), Expect = 4e-17
Identities = 82/345 (23%), Positives = 157/345 (44%), Gaps = 54/345 (15%)
Query: 66 GYPREIGIE-VGLDWVSSTFLIAEFLVFGA--SSLYLVKRVTNWKE----LSLLLLMHSG 118
G E+G++ + + ++ T L+ F++ + L + W+ +L+L + +
Sbjct: 73 GVRYELGVDGIAVALIALTALLIPFIILAGWHDADPLETGSSRWRPTQGFFALILAVEAM 132
Query: 119 LIGAFISKDYFNFYVFMELSAVSSYALI---------------ASQDREAAFKYLLLSMT 163
+I +F + D F FY+F E + Y LI A+Q AA K+LL ++
Sbjct: 133 VIISFEATDVFLFYIFFEAMLIPLYFLIGGFGDRAHEHGEKTAATQRSYAAVKFLLYNLA 192
Query: 164 ASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAA-----------ISLILKAGIF 212
+++ A+ +Y G N L R + L +A + +KA +F
Sbjct: 193 GGLIMLAAVIGLYVVAG--NFSLTEIAEARANGSLDMATSTERWLFLGFFFAFAVKAPLF 250
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILL-------SNLGDLSFLKPFAILSM 265
PLH WLP+A + V+ +++ + K + ++ ++ + A++S+
Sbjct: 251 PLHTWLPNAMGESTAPVAVLITAVVDKVGTFAMLRFCLQLFPEASKWATPVILVLAVISI 310
Query: 266 AFGVIMAILQFNAKRLLAYHTVSQMGYILLG---LSTGNVYGATLYSLAHAMFKGGLFLG 322
+G ++A+ Q + KRL+AY ++S G+I++G +++ GATLY + H + L L
Sbjct: 311 IYGALLAVGQRDIKRLIAYASISHFGFIIMGIFAMTSQGQSGATLYMVNHGISTAVLMLI 370
Query: 323 VGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVA 367
G +I R GSR I + ++ ++G IGG+A
Sbjct: 371 AGFLISRR--------GSRLIADFGGVQKVAPILAGT-FLIGGLA 406
>emb|CAB89015.1| (AL353870) probable NADH dehydrogenase I complex, subunit.
[Streptomyces coelicolor A3(2)]
Length = 967
Score = 90.5 bits (221), Expect = 4e-17
Identities = 98/373 (26%), Positives = 170/373 (45%), Gaps = 50/373 (13%)
Query: 77 LDWVSSTFLIAEFLVF---GASSLYLVKRVTNWKELSL--------LLLMHSGLIGAFIS 125
+DW +AE +V G +L LV + + + S LL ++G ++
Sbjct: 66 VDWALRLDALAELMVLLAAGVGTLVLVYCASYFDDRSRQLGRFAGNLLAFTGAMLGLVLA 125
Query: 126 KDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMTASYVLILALGMIYFQTG 180
D Y+F EL+ V SY LI ++R +A + L ++ +++ ++ + G
Sbjct: 126 DDLVLLYIFWELTTVFSYLLIGQTSDHKRNRRSALQALTVTALGGLTMLVGFLLLGHEAG 185
Query: 181 YLNVELASEVGLRDDTPLRLAAIS----LIL-----KAGIFPLHVWLPDAHSNAKTYVSS 231
V + D P AA+S LIL K+ I+P +WLP+A + A T VS+
Sbjct: 186 TYRVS-----AILADPPAPSAALSTAVVLILVGALSKSAIWPFSLWLPNAMA-APTPVSA 239
Query: 232 ILSGIA-VKAPIYGLILLSN-LGDLSFLKPFAIL----SMAFGVIMAILQFNAKRLLAYH 285
L A VKA +Y + L+ D++ +P ++ +M G A+ + K +LAY
Sbjct: 240 YLHAAAMVKAGVYLVARLAPAFADVTPWRPLLLVLGSVTMLLGGWRALRLHDLKLVLAYG 299
Query: 286 TVSQMGYILLGLSTGNV---YGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLG--S 340
TVSQ+G + + G AT L HA+FK LFL G + A +DL+ L
Sbjct: 300 TVSQLGLLTVLTGAGRHDTGLAATAMILGHALFKAPLFLVTGIVDHATGTRDLRKLSGLG 359
Query: 341 RNILLIVSIAILS-LAISGLGITIGGVAKSYL-------ATTEKAIIYAVSFGTAFSFSK 392
R + + ++A+L+ +++ + +G AK +T ++ + A G+A + +
Sbjct: 360 RRLPAVCAVAVLAGASMAAVPPLLGFSAKEAAFQALLDGSTGDRWALAAAVVGSALTTAY 419
Query: 393 LNYYLWKGYGNEP 405
YLW + +P
Sbjct: 420 TLRYLWGAFARKP 432
>emb|CAC12090.1| (AL445066) NADH dehydrogenase, chain L related protein
[Thermoplasma acidophilum]
Length = 635
Score = 90.5 bits (221), Expect = 4e-17
Identities = 99/412 (24%), Positives = 177/412 (42%), Gaps = 63/412 (15%)
Query: 5 IMVISPVIFSLLIYIFGTF--RIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGG 62
++ ISP+I LL I G + R G + F ++L +F + F + +
Sbjct: 9 MIFISPLIGFLLTLIIGKYYRRWSGAIASFF----------IFLAFIFSVITYFTVIKHP 58
Query: 63 VVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKE-------LSLLLLM 115
+ Y I+ G+ ++ + ++ +V S + + + K+ + L
Sbjct: 59 IYNSYTWFYNIDFGI-YIDNLAIVMAMMVSFVSLMIHLFAIYYMKDDPNKHVYFAETALF 117
Query: 116 HSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLIL 170
+G++G IS + ++F EL + SY LI AA K +++ I+
Sbjct: 118 TAGMLGLVISSNLVLLFLFWELVGLCSYLLIGFWFFKPNATAAAKKAFIVTRVGDLSFII 177
Query: 171 ALGMIYFQT----------GYLNVELASEVGLRDDTPLRLAAISLIL------KAGIFPL 214
+ ++Y+ YL + AS + + +RL I++ + K+ FPL
Sbjct: 178 GMSILYYSLINVTKDPLSIPYL-ISNASSIAVAIGK-VRLGIIAIFILGAAIGKSAQFPL 235
Query: 215 HVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMA-------- 266
HVW+PDA T + I + V A +Y + L + + PFA+ ++A
Sbjct: 236 HVWIPDAMEGPTTVSALIHAATMVTAGVYLVARLFQV--FLYAAPFAMYAVAIVGSFTAL 293
Query: 267 FGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSL------AHAMFKGGLF 320
+ I+ ++ + KR+LAY T+SQ+GY+L + + G SL +HA+FK LF
Sbjct: 294 YAGIVGLVVNDVKRILAYSTISQLGYMLAAIGLAPIIGGVAVSLGMFHLISHAIFKALLF 353
Query: 321 LGVG----AIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAK 368
+ G A++D R K + L R + I SLA+ T G +K
Sbjct: 354 MSAGAFLVAMMDLRDAKQMGGLWKRMPVTTTLFFIGSLALVAFPGTSGYFSK 405
>gi|5835047 NADH dehydrogenase subunit 4 [Didelphis virginiana]
>gi|730205|sp|P41308|NU4M_DIDMA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4 >gi|599731|emb|CAA82686.1|
(Z29573) NADH dehydrogenase subunit 4 [Didelphis
virginiana]
Length = 474
Score = 90.1 bits (220), Expect = 5e-17
Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 35/297 (11%)
Query: 51 LPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEF----LVFGASSLYLVKRVTNW 106
LPML P+ G LD +SS L+ L+ AS +L K
Sbjct: 39 LPMLYHPMDLG-------YNFNNSFSLDSLSSPLLVLSCWLLPLMIMASQNHLNKESLMR 91
Query: 107 KEL--SLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLL 159
K+L ++++++ S LI AF S + FY+ E + + + +I ++ A +L
Sbjct: 92 KKLYLTMMVILQSSLIIAFTSSELMMFYILFETTLIPTLIIITRWGNQNERLNAGIYFLF 151
Query: 160 LSMTASYVLILALGMIYFQTGYLNVELAS------EVGLRDDTPLRLAAISLILKAGIFP 213
++ S L++AL + G L++ + S L + T + ++K ++
Sbjct: 152 YTLVGSLPLLVALLTMNKNLGTLHILMNSILINQLNYTLSNSTLWYACMTAFMIKMPLYG 211
Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGD---LSFLKPFAILSMAFGVI 270
LH+WLP AH A S +L+ I +K YG++ +S + + L PF ILSM +G+I
Sbjct: 212 LHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIMRISLFTEPMTMHLLYPFIILSM-WGMI 270
Query: 271 M----AILQFNAKRLLAYHTVSQMGYILLGL---STGNVYGATLYSLAHAMFKGGLF 320
M + Q + K L+AY +VS M +++ ST + GAT+ +AH + LF
Sbjct: 271 MTSSICMRQTDLKSLIAYSSVSHMALVIIAALIQSTTSFMGATILMVAHGLTSSMLF 327
>emb|CAA63737.1| (X93358) phaD [Sinorhizobium meliloti]
Length = 547
Score = 90.1 bits (220), Expect = 5e-17
Identities = 82/315 (26%), Positives = 144/315 (45%), Gaps = 41/315 (13%)
Query: 46 LLGVFLPMLLFPLSRGGV----------VGGYPREIGIEVGLDWVSSTFL-IAEFLVFGA 94
L+ L M+L L+ G +G +P GI + LD +S+ L + L A
Sbjct: 51 LVVFILSMILMRLAAAGTGSLPGSGVYQLGNWPAPFGIVLVLDRLSALMLCLTSGLALAA 110
Query: 95 SSLYLVKRVTNWKEL-SLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDR-- 151
+ + + T SL L+ +GL GAF++ D FN +VF E+ +SY L+
Sbjct: 111 QAYSMARWHTAGHHFHSLFQLLVAGLNGAFLTGDLFNLFVFFEMMLAASYGLLLHGSGPL 170
Query: 152 --EAAFKYLLLSMTASYVLILALGMIYFQTGYLNV-ELASEVGLRDDTPLRLA------- 201
+A Y+ +++ AS + ++ + +IY G LN+ +LA+++ + L
Sbjct: 171 RVKAGLHYIAVNLAASALFLIGVSLIYGAAGTLNMADLATKLAALEPRSRTLVEMGSAIL 230
Query: 202 AISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILL------------S 249
++ ++KAG++PL WLP A++ A V+ + + + K IY +I L S
Sbjct: 231 GVAFLVKAGMWPLSFWLPTAYAAATPPVAGVFA-VLTKVGIYVIIRLHLLVFGTAAGASS 289
Query: 250 NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGAT 306
G +L +L++AFG I + RL Y + G +L + G+ + GA
Sbjct: 290 GFGQ-EWLVTGGMLTIAFGGIGVLASQAMGRLAGYSVLVSSGTLLAAVGLGHDGMLAGAL 348
Query: 307 LYSLAHAMFKGGLFL 321
Y ++ + G FL
Sbjct: 349 FYLVSSTLTIGAFFL 363
>emb|CAB59310.1| (AJ236293) NADH dehydrogenase subunit F [Danais xanthorrhoea]
Length = 671
Score = 90.1 bits (220), Expect = 5e-17
Identities = 88/328 (26%), Positives = 153/328 (45%), Gaps = 46/328 (14%)
Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILA 171
+ ++G S + Y+F EL V SY LI A K + + + L+L
Sbjct: 133 TSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLG 192
Query: 172 LGMIYFQTGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVWLPD 220
+ ++ TG E+ L D + ++L + K+ FPLHVWLPD
Sbjct: 193 ILGFFWITGSFEFRDLFEIFNNLIVDNEVNFVFVTLCAVLLFAGAVAKSAQFPLHVWLPD 252
Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGVIMA 272
A T +S+++ + A G+ L++ L L + P+ I+++ G +A
Sbjct: 253 A-MEGPTPISALIHAATMVAR--GIFLVARLLPLFIVIPYIMNFISLVGIITVFLGATLA 309
Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA--- 329
+ Q + KR LAY T+SQ+GY++L L G+ A + + HA K LFLG G+II +
Sbjct: 310 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSMET 369
Query: 330 ------RKRKDLKYLG--SRNILLIVSIAIL-SLAISGLGITIGGVAK------SYLATT 374
K +++ +G ++++ + S +L +L+I G+ +K S+L +T
Sbjct: 370 VVGYSPHKSQNMALMGGLTKHVPITKSTFLLGTLSICGIPPLACFWSKDEILTDSWLYST 429
Query: 375 EKAIIYAVSFG-TAFSFSKLNYYLWKGY 401
AII V+ G TAF ++ ++G+
Sbjct: 430 SFAIIAWVTAGLTAFYMFRIYLLTFEGH 457
>gb|AAF27244.1|AF111766_1 (AF111766) NADH dehydrogenase [Sparrmannia africana]
Length = 710
Score = 90.1 bits (220), Expect = 5e-17
Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 46/333 (13%)
Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVL 168
L ++ ++G S + Y+F EL + SY LI A K + + + L
Sbjct: 129 LFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRIGDFGL 188
Query: 169 ILALGMIYFQTGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVW 217
+L + Y+ TG + E+ L + + ++L + K+ FP HVW
Sbjct: 189 LLGIIGFYWITGSFEFQDLFEIFNNLIYNNEVNFLFVTLCASLLFAGAVAKSAQFPFHVW 248
Query: 218 LPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGV 269
LPDA T +S+++ + A G+ L++ L L + P+ I+++ G
Sbjct: 249 LPDA-MEGPTPISALIHAATMVAA--GIFLVARLLPLFIVIPYIMNVISLLGIITVLLGA 305
Query: 270 IMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA 329
+A+ Q + K+ LAY T+SQ+GY++L L G+ A + + HA K LFLG G+II +
Sbjct: 306 TLALAQKDIKKGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHS 365
Query: 330 R---------KRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGG--------VAKSYL 371
K +++ ++G R + I IA L +S GI ++ S+L
Sbjct: 366 MEAIVGYSPDKSQNMVFMGGLRKYVPITKIAFLVGTLSLCGIPPLACFWSKDEILSDSWL 425
Query: 372 ATTEKAIIYAVSFG-TAFSFSKLNYYLWKGYGN 403
+ AII + G TAF ++ ++G+ N
Sbjct: 426 YSPSFAIIAWSTAGLTAFYMXRIYLLTFEGHLN 458
>gi|11466469 NADH dehydrogenase subunit 5 [Chrysodidymus synuroideus]
>gi|7110466|gb|AAF36938.1|AF222718_12 (AF222718) NADH
dehydrogenase subunit 5 [Chrysodidymus synuroideus]
Length = 657
Score = 90.1 bits (220), Expect = 5e-17
Identities = 97/384 (25%), Positives = 169/384 (43%), Gaps = 52/384 (13%)
Query: 109 LSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALI-----ASQDREAAFKYLLLSMT 163
+S L L ++ S ++ +V E +SSY LI Q +++ K ++L+
Sbjct: 113 MSYLSLFTFFMLVLVTSNNFLQLFVGWEGVGLSSYLLINFWFTRIQANKSSIKAMVLNRI 172
Query: 164 ASYVLILALGMIYFQTGYLNVELAS-----------EVGLRDDTPLRLAAISLIL----K 208
+ ++A+ +Y T L+ ++ ++G+ L L + L L K
Sbjct: 173 GDFFFLIAIFSLYLITNSLDFDVIFSLVTLIKEYYIQIGIAKFCVLDLICLCLFLGATGK 232
Query: 209 AGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGD-----LSFLKPFAIL 263
+ LH WLPDA + I + V A ++ +I S L + L+ + +
Sbjct: 233 SAQLGLHSWLPDAMEGPTPVSALIHAATMVTAGVFLIIRCSFLFEYSPLILNLIIIIGSI 292
Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILL--GLSTGNVYGATLYSLAHAMFKGGLFL 321
+ F +LQ + KR++AY T SQ+GY+ GLS+ +V LY+ HA FK LFL
Sbjct: 293 TALFAATTGLLQNDIKRVIAYSTCSQLGYMFFACGLSSYDVGFFHLYN--HAFFKALLFL 350
Query: 322 GVGAIIDA-RKRKDLKYLGSRNILLIVSIAIL---SLAISGLGITIGGVAKSYLATTEKA 377
G G++I A +D++ +G I+L S +I+ SL++ G G +K
Sbjct: 351 GAGSVIHALANEQDMRKMGGLRIILPFSYSIMLIGSLSLIGFPFLSGFYSKD-------- 402
Query: 378 IIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGVLTVLVGIE------LGGKL 431
+I +++ +F YYL G + S + +L L+ L
Sbjct: 403 VILEIAYAKYNTFGHFAYYL----GVLAAFCTAFYSTRVLILVFLINTNGFRTNILNAHE 458
Query: 432 SKYDLLIPLAFLTFYA-LRGYLTR 454
Y ++PL FLT + + GYL++
Sbjct: 459 GSYFFVLPLFFLTILSIISGYLSK 482
>gb|AAF82680.1| (AF188856) NADH dehydrogenase subunit B [Nymphaea odorata]
Length = 486
Score = 90.1 bits (220), Expect = 5e-17
Identities = 84/323 (26%), Positives = 143/323 (44%), Gaps = 40/323 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L R EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDVRSNEATMKYLLMGGA 189
Query: 164 ASYVLILALGMIYFQTGYLNVELASEVG------LRDDTPLRLAAISLILKAGI----FP 213
+S +L+ +Y +G +EL V + + + +A IS+ + G P
Sbjct: 190 SSSILVYGFSWLYGSSGG-EIELQEIVNGLINTQMYNSPGISIALISITVGIGFKLSPAP 248
Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAIL 263
H W PD + + T V + LS V + + + + D+ F L+ AIL
Sbjct: 249 FHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAIL 305
Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGV 323
SM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ + + +F + LG
Sbjct: 306 SMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGT 365
Query: 324 GAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATT 374
A I +D L +++ L +S A+ L++ G+ G K YL
Sbjct: 366 FACIVLFGLRTGTDNIRDYAGLYTKDPFLALSSALCLLSLGGIPPLAGFFGKLYLFWCGW 425
Query: 375 EKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 426 QAGLYFLVSIGLLTSVVSIYYYL 448
>pir||F83315 NADH dehydrogenase I chain N PA2649 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948718|gb|AAG06037.1|AE004693_8 (AE004693) NADH
dehydrogenase I chain N [Pseudomonas aeruginosa]
Length = 486
Score = 90.1 bits (220), Expect = 5e-17
Identities = 97/395 (24%), Positives = 176/395 (44%), Gaps = 50/395 (12%)
Query: 44 LYLLGVFLPML-LFPLSRGGVVGGYPREIGIEVGLD----WVSSTFLIAEFLVFGASSLY 98
L ++G+ L +L L P V+G P E+ V +D + + L++ + Y
Sbjct: 40 LSVIGLNLALLSLLP-----VLGVTPIEVTPLVLVDNYACFYMALVLVSALACVTLAHAY 94
Query: 99 LVKRVTNWKELSLLLLMHSGLIGAFISKDYF-NFYVFMELSAVSSYALIA-----SQDRE 152
+ N +EL LLLL+ + +S + + ++ +EL +V Y ++A + E
Sbjct: 95 MESYPGNREELYLLLLLATAGGLVLVSAQHLASLFIGLELLSVPVYGMVAYAFFNKRSLE 154
Query: 153 AAFKYLLLSMTASYVLILALGMIYFQTGYLN-----VELASEV--GLRDDTPLRLAAISL 205
A KY +LS S L+ + ++Y ++G L ++A V G + + + L
Sbjct: 155 AGIKYTVLSAAGSAFLLFGMALLYAESGTLGFAGLGAKVAEHVLSGPLVSVGVGMMLVGL 214
Query: 206 ILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF--------L 257
K + P H+W PD + A VS+ L+ + A L+ L + + L
Sbjct: 215 GFKLSLVPFHLWTPDVYEGAPAPVSAFLATASKVAVFAVLLRLFQIAPAALDNQLLNISL 274
Query: 258 KPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAM 314
A+ S+ FG ++A+ Q N KRLL Y +++ +GY+L+ L V +Y + +
Sbjct: 275 SVIAVASILFGNLLALTQSNIKRLLGYSSIAHLGYLLVALIASKGMAVEAVGVYLATYVL 334
Query: 315 FKGGLFLGVGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVA 367
G F GV ++ DA + + L R +L + ++ L+++G+ +T G +
Sbjct: 335 TSLGAF-GVITLMSTPYSGRDADALFEYRGLFWRRPVLTAVMTVMMLSLAGIPLTAGFIG 393
Query: 368 KSYLATTEKA-----IIYAVSFGTAFSFSKLNYYL 397
K Y+ +I A+ G+A L YYL
Sbjct: 394 KFYVIAVGVESHLWWLIGALVLGSAIG---LYYYL 425
>gb|AAG12221.1| (AF163455) NADH dehydrogenase subunit F [Carex deweyana]
Length = 671
Score = 90.1 bits (220), Expect = 5e-17
Identities = 89/347 (25%), Positives = 151/347 (42%), Gaps = 39/347 (11%)
Query: 91 VFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA--- 147
VF S Y+ + + L L ++ + G S + Y+F E+ + SY LI
Sbjct: 96 VFIYSDNYMSHDQAYLRFFAYLNLFNASMFGLVTSSNLIQVYIFWEIVGICSYLLIGFWF 155
Query: 148 --SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEV--GLRDDTPLRLAAI 203
A K + + + L+L + Y+ G E+ L L I
Sbjct: 156 TRPLAANACQKAFVTNRVGDFGLLLGILGFYWIIGSFEFRDLFEITNNLIQKNGLNSLLI 215
Query: 204 SL---------ILKAGIFPLHVWLPDAHSNAKTYVSSIL-------SGIAVKAPIYGLI- 246
+L I K+ FPLH+WLPDA T VS+++ +G+ + A ++ L+
Sbjct: 216 TLCTFLLFVGAIAKSAQFPLHIWLPDA-MEGPTPVSALIHAATMVAAGVFLVARLFPLLS 274
Query: 247 LLSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGAT 306
+ SN+ + + ++++ G +A+ Q + KR LAY T+SQ+GYI+L L G+ A
Sbjct: 275 ITSNI--MHIISSIGLITLFLGATLALAQIDIKRSLAYSTMSQLGYIILALGIGSSRTAL 332
Query: 307 LYSLAHAMFKGGLFLGVGAIIDAR---------KRKDLKYLGS-RNILLIVSIAILSLAI 356
+ + HA K LFLG G+II + K +++ +G + I A L +
Sbjct: 333 FHLITHAYSKALLFLGSGSIIHSMEPVVGYSPYKNQNMVLMGGLTKYIPITRTAFLLGTL 392
Query: 357 SGLGITIGGVAKSYLATTEKAIIYAVSFG--TAFSFSKLNYYLWKGY 401
S GI S + +Y+ FG T F+ +Y+++ Y
Sbjct: 393 SLCGIPPLACFWSKDEILSNSWLYSPIFGIITYFTTGLTAFYMFRXY 439
>pir||S47879 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - North
American opossum mitochondrion
Length = 459
Score = 90.1 bits (220), Expect = 5e-17
Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 35/297 (11%)
Query: 51 LPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEF----LVFGASSLYLVKRVTNW 106
LPML P+ G LD +SS L+ L+ AS +L K
Sbjct: 39 LPMLYHPMDLG-------YNFNNSFSLDSLSSPLLVLSCWLLPLMIMASQNHLNKESLMR 91
Query: 107 KEL--SLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLL 159
K+L ++++++ S LI AF S + FY+ E + + + +I ++ A +L
Sbjct: 92 KKLYLTMMVILQSSLIIAFTSSELMMFYILFETTLIPTLIIITRWGNQNERLNAGIYFLF 151
Query: 160 LSMTASYVLILALGMIYFQTGYLNVELAS------EVGLRDDTPLRLAAISLILKAGIFP 213
++ S L++AL + G L++ + S L + T + ++K ++
Sbjct: 152 YTLVGSLPLLVALLTMNKNLGTLHILMNSILINQLNYTLSNSTLWYACMTAFMIKMPLYG 211
Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGD---LSFLKPFAILSMAFGVI 270
LH+WLP AH A S +L+ I +K YG++ +S + + L PF ILSM +G+I
Sbjct: 212 LHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIMRISLFTEPMTMHLLYPFIILSM-WGMI 270
Query: 271 M----AILQFNAKRLLAYHTVSQMGYILLGL---STGNVYGATLYSLAHAMFKGGLF 320
M + Q + K L+AY +VS M +++ ST + GAT+ +AH + LF
Sbjct: 271 MTSSICMRQTDLKSLIAYSSVSHMALVIIAALIQSTTSFMGATILMVAHGLTSSMLF 327
>gb|AAG12227.1| (AF163461) NADH dehydrogenase subunit F [Kobresia uncinioides]
Length = 626
Score = 90.1 bits (220), Expect = 5e-17
Identities = 81/325 (24%), Positives = 142/325 (42%), Gaps = 37/325 (11%)
Query: 112 LLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASY 166
L L ++ ++G S + Y+F E+ + SY LI A K + + +
Sbjct: 52 LNLFNASMLGLVTSSNLIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGDF 111
Query: 167 VLILALGMIYFQTGYLNVELASEV-----------GLRDDTPLRLAAISLILKAGIFPLH 215
L+L + Y+ G E+ L L + I K+ FPLH
Sbjct: 112 GLLLGILGFYWIIGSFEFRDLFEITNNLIQKNGVNSLFTTLCTFLLFVGAIAKSAQFPLH 171
Query: 216 VWLPDAHSNAKTYVSSIL-------SGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFG 268
+WLPDA T +S+++ +G+ + A ++ L+L++ + + ++++ G
Sbjct: 172 IWLPDA-MEGPTPISALIHAATMVAAGVFLVARLFPLLLITP-NIMHIISSIGLITLFLG 229
Query: 269 VIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIID 328
+A+ Q + KR LAY T+SQ+GYI+L L G+ A + + H K LFLG G+II
Sbjct: 230 ATLALAQIDIKRSLAYSTMSQLGYIILALGIGSSRTALFHLITHGYSKALLFLGSGSIIH 289
Query: 329 AR---------KRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAI 378
+ K +++ +G + I A L +S GI G S +
Sbjct: 290 SMEPVVGYSPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLGCFWSKDEILSNSW 349
Query: 379 IYAVSFG--TAFSFSKLNYYLWKGY 401
+Y+ FG T F+ +Y+++ Y
Sbjct: 350 LYSPIFGIITYFTTGLTAFYMFRVY 374
>gb|AAG26093.1| (AF123771) NADH dehydrogenase subunit B [Acorus calamus]
Length = 486
Score = 90.1 bits (220), Expect = 5e-17
Identities = 81/324 (25%), Positives = 141/324 (43%), Gaps = 42/324 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L R EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGANDSITIFVAPECFSLCSYLLSGYTKRDVRSNEATMKYLLMGGA 189
Query: 164 ASYVLILALGMIY-----------FQTGYLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
+S +L+ +Y G +N ++ + G+ L + + K +
Sbjct: 190 SSSILVHGFSWLYGLSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSLA 247
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
P H W PD + + T V + LS V + + + + D+ F L+ AI
Sbjct: 248 PFHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAI 304
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
LSM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ + + +F + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364
Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
A I +D L +++ L +S+A+ L++ GL G K +L
Sbjct: 365 TFARIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCG 424
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVVSIYYYL 448
>gb|AAG26132.1| (AF123784) NADH dehydrogenase subunit B [Trochodendron aralioides]
Length = 486
Score = 90.1 bits (220), Expect = 5e-17
Identities = 82/324 (25%), Positives = 142/324 (43%), Gaps = 42/324 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L R EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDVRSNEATTKYLLMGGA 189
Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
+S +L+ +Y +G +N ++ + G+ L + + K
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSPA 247
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
P H W PD + + T V + LS V + + L + + D+ F L+ AI
Sbjct: 248 PSHQWTPDVYEGSPTPVVAFLS---VTSKVAALASATRIFDIPFYFSSNEWHLLLEILAI 304
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
LSM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ + + +F + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364
Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
A I +D L +++ L +S+A+ L++ GL G K +L
Sbjct: 365 TFACIVSFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCG 424
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVVSIYYYL 448
>emb|CAB65486.1| (AJ235842) NADH dehydrogenase, putative [Usteria guineensis]
Length = 666
Score = 89.7 bits (219), Expect = 7e-17
Identities = 90/330 (27%), Positives = 148/330 (44%), Gaps = 46/330 (13%)
Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILA 171
+ ++G S + Y+F E + SY LI A K + + + L+L
Sbjct: 69 TSMLGLVTSSNLIQIYIFWEXVGMCSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLG 128
Query: 172 LGMIYFQTGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVWLPD 220
+ Y+ TG E+ L + + L ++L + K+ FPLHVWLPD
Sbjct: 129 ILGFYWITGSFEFRDLFEIFNNLIYNNEVNLFFVTLCGVLLFAGALAKSAQFPLHVWLPD 188
Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGVIMA 272
A T +S+++ + A G+ L++ L L + PF AI+++ G +A
Sbjct: 189 A-MEGPTPISALIHAATMVAA--GIFLVARLLPLFMVIPFIMNFISLIAIITVLLGATLA 245
Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA--- 329
+ Q + KR LAY T+SQ+GY++L L G+ A + + HA K LFLG G++I +
Sbjct: 246 LAQKDIKRGLAYSTMSQLGYMMLALGIGSYRSALFHLITHAYSKALLFLGSGSLIHSMEN 305
Query: 330 ------RKRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGG--------VAKSYLATT 374
K +++ +G R L I A L +S GI + S+L +T
Sbjct: 306 IVGYSPSKSQNMVLMGGLRKHLPITKNAFLLGILSLCGIPPLACFWSKDQILTDSWLYST 365
Query: 375 EKAIIYAVSFG-TAFSFSKLNYYLWKGYGN 403
AII + + G TAF + ++G+ N
Sbjct: 366 IFAIIASTTAGLTAFXMFRXXLLTFEGHLN 395
>gb|AAF27247.1|AF111769_1 (AF111769) NADH dehydrogenase [Grewia biloba]
Length = 711
Score = 89.7 bits (219), Expect = 7e-17
Identities = 87/333 (26%), Positives = 150/333 (44%), Gaps = 46/333 (13%)
Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVL 168
L ++ ++G S + Y+F EL + SY LI A K + + + L
Sbjct: 130 LFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRIGDFGL 189
Query: 169 ILALGMIYFQTGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVW 217
+L + Y+ TG + E+ L + + ++L + K+ FP HVW
Sbjct: 190 LLGILGFYWITGSFEFQDLFEIFNNLIYNNEVNSLFVTLCASLLFAGAVAKSAQFPFHVW 249
Query: 218 LPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGV 269
LPDA T +S+++ + A G+ L++ L L + P+ I+++ G
Sbjct: 250 LPDA-MEGPTPISALIHAATMVAA--GIFLVARLLPLFIVIPYIMNLISLLGIITVLLGA 306
Query: 270 IMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA 329
+A+ Q + K LAY T+SQ+GY++L L G+ A + + HA K LFLG G+II +
Sbjct: 307 TLALAQKDIKXGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHS 366
Query: 330 R---------KRKDLKYLGS-RNILLIVSIAILSLAISGLGI--------TIGGVAKSYL 371
K +++ ++G R + I IA L +S GI ++ S+L
Sbjct: 367 MEAIVGYSPDKSQNMVFMGGLRKYVPITKIAFLVGTLSLCGIPPLACFWSKXEILSDSWL 426
Query: 372 ATTEKAIIYAVSFG-TAFSFSKLNYYLWKGYGN 403
+ AII + G TAF ++ ++G+ N
Sbjct: 427 YSPIFAIIAWSTAGLTAFDMXRIXLXXFEGHXN 459
>gb|AAG26111.1| (AF123777) NADH dehydrogenase subunit B [Dioscorea bulbifera]
Length = 480
Score = 89.7 bits (219), Expect = 7e-17
Identities = 84/323 (26%), Positives = 144/323 (44%), Gaps = 40/323 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L R EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGANDLITLFVAPECFSLCSYLLSGYTKRDVRSNEATMKYLLMGGA 189
Query: 164 ASYVLILALGMIYFQTGYLNVELASEVG------LRDDTPLRLAAISLILKAGI----FP 213
+S +L+ +Y +G +EL V + + + +A IS+ + G P
Sbjct: 190 SSSILVHGFSWLYGSSGG-EIELQEIVNGLINTQMYNSPGISIALISITVGIGFKLSPAP 248
Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAIL 263
H W PD + + T V + LS V + + + + D+ F L+ AIL
Sbjct: 249 FHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAIL 305
Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGV 323
SM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ + + +F + LG
Sbjct: 306 SMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGT 365
Query: 324 GAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATT 374
A I +D L +++ L +S+A+ L++ GL G K +L
Sbjct: 366 FACIVSFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCGW 425
Query: 375 EKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 426 QAGLYFLVSIGLLTSVVSIYYYL 448
>pir||C70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoN1 -
Aquifex aeolicus >gi|2983744|gb|AAC07305.1| (AE000734)
NADH dehydrogenase I chain N [Aquifex aeolicus]
Length = 464
Score = 89.3 bits (218), Expect = 9e-17
Identities = 97/353 (27%), Positives = 159/353 (44%), Gaps = 42/353 (11%)
Query: 77 LDWVSSTFLIAEF-LVFGASSLYLVKRVTNWKELSLLLLMHS-GLIGAFISKDYFNFYVF 134
L+ + F++A V +S Y K+ + + EL L L+ + GL+ S + +
Sbjct: 68 LNLIGKLFILAVTGFVLLSSYDYFSKKNSQYGELPYLYLIATLGLMVMISSDNLAIIFTG 127
Query: 135 MELSAVSSYALIASQDRE-----AAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASE 189
+EL++++ Y L+ RE AFKYL++ T + + L ++Y +G + + E
Sbjct: 128 LELASITMYILVGLFRREYLSKEGAFKYLVIGTTGTSMYALGSALVYASSGSMVLSPVKE 187
Query: 190 VGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI--- 246
+ L +L LK P H W PDA+ A T ++ LS + K +Y L
Sbjct: 188 ENTLFALGVILIISALALKVSAVPFHFWTPDAYEGAPTPTTAYLSTVP-KIGMYFLFVKL 246
Query: 247 ---LLSNLGDLSFLKPF-AILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLST--G 300
L S D ++ A+LSM +G I+A Q + KRLLAY +++ GY L L+
Sbjct: 247 TMYLFSAFPDWKYVVMLLAVLSMFYGNIVAYAQKSVKRLLAYSSIAHAGYFLTALTAVDK 306
Query: 301 NVYGATL-YSLAHAMFKGGLFLGVGAIIDARKR-----KDLKYLGSRNILLIVSIAILSL 354
+++ A L Y +A+ G F V AI++ ++ D K L N +L +A+
Sbjct: 307 HLFSALLFYVFVYALATVGAFT-VLAILEKKEGWTHHFLDFKGLKEENPVLASMLALFLF 365
Query: 355 AISG----------LGITIGGVAKSYLATTEKAIIYAVSFGTAFSFSKLNYYL 397
A+ G LGI G V A I++A++ S YYL
Sbjct: 366 ALIGIPPAAVFLGKLGIFFGLVKTDMFAL---GILFAIA-----SLISAGYYL 410
>gb|AAF03715.1| (AF182322) NADH dehydrogenase subunit 4 [Drosophila albomicans]
Length = 446
Score = 89.3 bits (218), Expect = 9e-17
Identities = 85/331 (25%), Positives = 151/331 (44%), Gaps = 26/331 (7%)
Query: 33 FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
F P+ + K +++ V + F Y EI +G D +S ++ +
Sbjct: 10 FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69
Query: 93 GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
++ V + N+K L LL +L+ L+ F S F FY+F+E S + + LI
Sbjct: 70 ALMLTASESVNKYNNYKNLFLLNVVLLLLLLVLTFSSMSLFMFYLFLESSLIPTLFLILG 129
Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
+ +A L ++ S +++ + + + G +N L + D
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMNNFMFNYDLLYFCMMC 189
Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
+ ++K +F +H+WLP AH A S IL+GI +K YG++ + ++ L +K I
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249
Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYGATL-YSL--AHAM 314
+S+ GV+++ + Q + K L+AY +V+ MG L GL T + +G + YSL AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCVSYSLMIAHGL 309
Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
GLF + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332
>emb|CAB67207.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit 2 [Oenothera
elata subsp. hookeri] >gi|6723827|emb|CAB67238.1|
(AJ271079) NADH-plastoquinone oxidoreductase subunit 2
[Oenothera elata subsp. hookeri]
Length = 510
Score = 89.3 bits (218), Expect = 9e-17
Identities = 81/324 (25%), Positives = 141/324 (43%), Gaps = 42/324 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMEL-----SAVSSYALIASQDREAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E S +S Y + EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGATDLITIFVAPECFSLCSSLLSGYTKKDVRSNEATMKYLLMGGA 189
Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
+S +L+ +Y +G +N ++ + G+ L + + K
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSPA 247
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
P H W PD + + T V + LS V + + + + D+ F L+ AI
Sbjct: 248 PSHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFFFSSFEWHPLLEILAI 304
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
LSM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ G + + +F + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDANGGYASMITYMLFYISMNLG 364
Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
A I +D L +++ L +S+A+ L++ GL G K +L
Sbjct: 365 TFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCG 424
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 425 WQAGLYFLVSIGLFTSVVSIYYYL 448
>sp|P56911|NUN2_RHIME NADH DEHYDROGENASE I CHAIN N 2 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN N 2)
Length = 344
Score = 89.3 bits (218), Expect = 9e-17
Identities = 75/293 (25%), Positives = 132/293 (44%), Gaps = 34/293 (11%)
Query: 135 MELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASE 189
+EL + +Y L + EAA KY++L ++ + + + +IY TG ++ +E
Sbjct: 1 LELMVLCTYVLTGFLRKERRSNEAALKYVILGAVSTAIFLYGVSLIYGLTGTTQLDRMAE 60
Query: 190 V--GLRDDTPLRLAAI----SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIY 243
G D L LA + L+ K G P H+W+PD + A T +++ +S +A KA +
Sbjct: 61 AVSGGPLDPALLLAVVFIVAGLVFKIGAVPFHMWVPDVYEGAPTTITAFMS-VAPKAAGF 119
Query: 244 GLILLSNLGDLS-------FLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLG 296
+IL L L + A+ +MA G +A++Q N KRLLAY +++ G+ + G
Sbjct: 120 AVILRVFLNPLVEASNAWIIVAAIAVATMALGSFVALVQDNFKRLLAYSSIAHAGFAIFG 179
Query: 297 LSTG---NVYGATLYSLAHAMFKGGLFLGVGAIIDARKR-------KDLKYLGSRNILLI 346
+ G + LY L + G+F GA+I R +D + L
Sbjct: 180 VVAGGQDGIASVMLYLLIYTFMNLGIF---GAVIMMRNGDFSGEVIEDYAGFAKFHPGLA 236
Query: 347 VSIAILSLAISGLGITIGGVAKSY--LATTEKAIIYAVSFGTAFSFSKLNYYL 397
+ + + +++G+ T G AK Y +A E+ + S +Y+
Sbjct: 237 LLMLLYLFSLAGIPPTAGFFAKFYVLVALVERGFVALAVIAVLLSVVSAYFYI 289
>gb|AAF73308.1| (AF188850) NADH dehydrogenase subunit B [Zamia furfuracea]
Length = 470
Score = 89.3 bits (218), Expect = 9e-17
Identities = 87/323 (26%), Positives = 144/323 (43%), Gaps = 40/323 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
LL L+ + L G + + D +V +E ++ SY L R EA KYLL+
Sbjct: 112 LLFLLTAALGGMVLCGANDLVTIFVALECFSLCSYLLSGYTKRDVXSNEATMKYLLMGGA 171
Query: 164 ASYVLILALGMIYFQTGYLNVELASEVG------LRDDTPLRLAAISLIL----KAGIFP 213
+S +L+ +Y +G +EL V + + + +A IS+ + K + P
Sbjct: 172 SSSILVYGFSWLYGLSGG-EIELQEVVNGLINTQMYNSPGILIALISITVGIGFKLSLVP 230
Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAIL 263
H W PD + + T V + LS V + + L + + D+ F L+ AIL
Sbjct: 231 FHQWTPDVYEGSPTPVVAFLS---VTSKVAASALATRIFDIIFYFSSNEWHLLLEILAIL 287
Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG---NVYGATL-YSLAHAMFKGGL 319
SM G ++AI Q + KR+LAY ++ Q+GYI++G+ G N Y + + Y L + G
Sbjct: 288 SMILGNLIAITQTSMKRMLAYSSMGQIGYIIIGIIAGDSKNGYASMITYMLFYIFMNLGT 347
Query: 320 FLGV---GAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATT 374
F + G +D L +++ S+A+ L++ G+ G K YL
Sbjct: 348 FACIVLFGLRTGTDNIRDYAGLYTKDPFSAFSLALCLLSLGGIPPLAGFFGKLYLFWCGW 407
Query: 375 EKAIIYAVSFGTAFSFSKLNYYL 397
+ + VS G S + YYL
Sbjct: 408 QAGLYLLVSIGPFMSVISIYYYL 430
>gb|AAF77285.1| (AF200832) NADH dehydrogenase subunit 4 [Drosophila sechellia]
Length = 446
Score = 89.3 bits (218), Expect = 9e-17
Identities = 85/331 (25%), Positives = 148/331 (44%), Gaps = 26/331 (7%)
Query: 33 FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
F PL + +++ + + + F Y EI +G D +S ++ +
Sbjct: 10 FLTPLCFMSNMYWMVQIMMVFISFIFLVMNNFMNYWSEISYFLGCDMLSYGLILLSLWIC 69
Query: 93 GASSLYL--VKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
L + + N+K L LL +++ LI F S F FY+F E S + + LI
Sbjct: 70 SLMLLASESINKYNNYKNLFLLNIVILLLLLILTFSSMSLFMFYLFFESSLIPTLFLILG 129
Query: 149 ----QDREAAFKYLLL-SMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
+R A YLL ++ S +++ + + + G +N L + D
Sbjct: 130 WGYQPERLQAGVYLLFYTLLVSLPMLIGIFYVMNKIGSMNFYLMNNFMFNHDLLYFCLLC 189
Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGL---ILLSNLGDLSFLKPF 260
+ ++K +F +H+WLP AH A S IL+GI +K YGL I L +L + +
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVIAFLQLMNLKYSFVW 249
Query: 261 AILSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYGAT---LYSLAHAM 314
+S+ GV+++++ Q + K L+AY +V+ MG +L GL T +G + +AH +
Sbjct: 250 ISISLVGGVLVSLVCLRQTDLKALIAYSSVAHMGIVLSGLLTMTYWGLSGSYTLMIAHGL 309
Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
GLF + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSMLI 332
>gi|11466667 NADH dehydrogenase subunit 2 [Malawimonas jakobiformis]
>gi|10178705|gb|AAG13717.1|AF295546_43 (AF295546) NADH
dehydrogenase subunit 2 [Malawimonas jakobiformis]
Length = 494
Score = 89.3 bits (218), Expect = 9e-17
Identities = 81/335 (24%), Positives = 153/335 (45%), Gaps = 35/335 (10%)
Query: 98 YLVKRVTNWKELSLLLLMHS-GLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DR 151
YL N E S+L+L + ++ S + + Y+ +EL +++ Y L + +
Sbjct: 104 YLKNNKINSFEYSILILFSTIAMLLMTSSYNLISIYLSIELQSLAFYVLASMKRNSEYST 163
Query: 152 EAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLR---------LAA 202
EA+FKY +L + +S L+L ++Y TG N+E ++ + + + + L
Sbjct: 164 EASFKYFILGVFSSGFLLLGFSILYGITGINNIEQFYKLFIINYSNIEHISLYISLFLII 223
Query: 203 ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLIL-------LSNLGDLS 255
IS + K G P H+WLPD + + V++ + I K I LI+ + +L+
Sbjct: 224 ISFLFKIGAAPFHMWLPDVYEGSPLSVTAFFA-ITPKIVILSLIIRLFIYTFYDIIEELN 282
Query: 256 FLKPFA-ILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGL---STGNVYGATLYSLA 311
++ + I SMA A+ Q RLLAY + +GYIL+G+ S ++ + LY +
Sbjct: 283 YIFIISSITSMALASFFALYQKKIIRLLAYSAIGHIGYILIGITSSSINSIQSSLLYIIV 342
Query: 312 HAMFKGGLFLGVGAIIDARKRKDLKY------LGSRNILLIVSIAILSLAISGLGITIGG 365
+ + ++ V ++ ++KY L +N +L S +L +++G+ G
Sbjct: 343 YIIMTINIYSIVISLYSNNNNIEIKYIKELINLSKQNPILAFSFTMLLFSMAGIPPLAGF 402
Query: 366 VAKSYL--ATTEKAIIYAVSFGTAFSFSKLNYYLW 398
K Y+ + ++ V G S YY++
Sbjct: 403 FNKLYIFSSAINVSMYLLVFIGILTSVISAVYYIY 437
>gb|AAG26099.1| (AF123773) NADH dehydrogenase subunit B [Cabomba caroliniana]
Length = 486
Score = 89.3 bits (218), Expect = 9e-17
Identities = 84/323 (26%), Positives = 142/323 (43%), Gaps = 40/323 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L R EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDVRSNEATMKYLLMGGA 189
Query: 164 ASYVLILALGMIYFQTGYLNVELASEVG------LRDDTPLRLAAISLILKAGI----FP 213
+S +L+ +Y +G +EL V + + + +A IS+ G P
Sbjct: 190 SSSILVYGFSWLYGSSGG-EIELQEIVNGLINTQMYNSPGISIALISITAGIGFKLSPAP 248
Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAIL 263
H W PD + + T V + LS V + + + + D+ F L+ AIL
Sbjct: 249 FHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAIL 305
Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGV 323
SM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ + + +F + LG
Sbjct: 306 SMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGT 365
Query: 324 GAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATT 374
A I +D L +++ L +S A+ L++ G+ G K YL
Sbjct: 366 FACIVSFGLRTGTDNIRDYAGLYTKDPFLALSSALCLLSLGGIPPLAGFFGKLYLFWCGW 425
Query: 375 EKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 426 QAGLYFLVSIGLLTSVVSIYYYL 448
>gb|AAD52735.1|AF123677_1 (AF123677) NADH dehydrogenase [Bacopa caroliniana]
Length = 702
Score = 88.9 bits (217), Expect = 1e-16
Identities = 79/288 (27%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 70 EIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAF 123
+ G E G +D ++S L+ +V S Y+ K + + + ++G
Sbjct: 72 DFGFEFGYLIDPLTSIMLMLITTVGIMVLIYSDKYMTHDQGYLKFFAYMSFFSTSMLGLV 131
Query: 124 ISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQ 178
S + Y+F EL + SY LI A K + + + L+L + Y+
Sbjct: 132 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWI 191
Query: 179 TGYLNVELASEV------GLRDDTP-LRLAAISL----ILKAGIFPLHVWLPDAHSNAKT 227
TG E+ ++P + L A+ L I K+ FPLHVWLPDA T
Sbjct: 192 TGSFEFRDLFEIFNNLIYNNEVNSPFVTLCAVLLFAGAIAKSAQFPLHVWLPDA-MEGPT 250
Query: 228 YVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGVIMAILQFNAK 279
+S+++ + A G+ L++ L L + P+ I+++ G +A+ Q + K
Sbjct: 251 PISALIHAATMVAA--GVFLVARLLPLFIVIPYIMNFISLIGIITVLLGATLALAQKDIK 308
Query: 280 RLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
R LAY T+SQ+GY++L L G+ A + + HA K LFLG G++I
Sbjct: 309 RGLAYSTMSQLGYMMLALGMGSCRSALFHLITHAYSKALLFLGSGSVI 356
>emb|CAB59327.1| (AJ236304) NADH dehydrogenase subunit F [Pentas lanceolata]
Length = 732
Score = 88.9 bits (217), Expect = 1e-16
Identities = 90/334 (26%), Positives = 157/334 (46%), Gaps = 52/334 (15%)
Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVL 168
L + ++G S + Y+F EL V SY LI A K + + + L
Sbjct: 130 LFSTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGL 189
Query: 169 ILALGMIYFQTG----------YLNVELASEVGLRDDTPLRLAAISL----ILKAGIFPL 214
+L + ++ TG + N+ + +EV T L A+ L + K+ FPL
Sbjct: 190 LLGILGFFWITGSFEFRDLFEIFNNLIVTNEVSFAFVT---LCAVLLFAGAVAKSAQFPL 246
Query: 215 HVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI--------LSMA 266
HVWLPDA T +S+++ + A G+ L++ L + P+ + +++
Sbjct: 247 HVWLPDA-MEGPTPISALIHAATMVAA--GIFLVARLLPFFIVIPYIMNLISLVGTVTLL 303
Query: 267 FGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAI 326
G +A+ Q + KR LAY T+SQ+GY++L L G+ A + + HA K LFLG G+I
Sbjct: 304 LGATLALAQKDIKRGLAYSTMSQLGYMMLALGLGSYRSALFHLITHAYSKALLFLGSGSI 363
Query: 327 IDA---------RKRKDLKYLG--SRNILLIVSIAIL-SLAISGLGITIGGVAK------ 368
I + K +++ +G ++++ L S ++ +L+I G+ +K
Sbjct: 364 IHSMETVVGYSPHKSQNMALMGGLTKHVPLTKSTFLVGTLSICGIPPLACFWSKDEILTD 423
Query: 369 SYLATTEKAIIYAVSFG-TAFSFSKLNYYLWKGY 401
S+L +T AII V+ G TAF ++ ++G+
Sbjct: 424 SWLYSTSFAIIAWVTAGLTAFYMFRIYLLTFEGH 457
>gb|AAF03711.1| (AF182320) NADH dehydrogenase subunit 4 [Drosophila immigrans]
Length = 446
Score = 88.9 bits (217), Expect = 1e-16
Identities = 90/337 (26%), Positives = 152/337 (44%), Gaps = 38/337 (11%)
Query: 33 FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFL-----IA 87
F P+ + K +++ V L + F Y EI +G D +S + I
Sbjct: 10 FISPICFINKMYWMVQVLLFFISFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69
Query: 88 EFLVFGASSLYLVKRVTNWKELSL-----LLLMHSGLIGAFISKDYFNFYVFMELSAVSS 142
++ + S+Y + N+K L L LLL+ L+ F S F FY+F E S + +
Sbjct: 70 SLMLLASESVY---KYNNYKNLFLFNVVMLLLL---LVLTFSSMSLFMFYLFFESSLIPT 123
Query: 143 YALIAS-----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTP 197
LI + +A L ++ S +++ + + + G +N L + D
Sbjct: 124 LFLILGWGYQPERLQAGIYLLFYTLLVSLPMLVGIFYLMNKMGTMNFYLMNNFMFNYDLL 183
Query: 198 LRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFL 257
+ ++K +F +H+WLP AH A S IL+GI +K YG++ + +L L +
Sbjct: 184 YFCMMCAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISLLQLMNM 243
Query: 258 KPFAI---LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL 310
K I +S+ GV+++ + Q + K L+AY +V+ MG L GL T + +G YSL
Sbjct: 244 KYSFIWVSISLVGGVLVSFVCLRQTDLKTLIAYSSVAHMGIALAGLLTMSYWGLCGSYSL 303
Query: 311 --AHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
AH + GLF + LGSR++L+
Sbjct: 304 MIAHGLCSSGLF--------CLANVSYERLGSRSLLI 332
>gb|AAG26108.1| (AF123776) NADH dehydrogenase subunit B [Cercidiphyllum japonicum]
Length = 484
Score = 88.9 bits (217), Expect = 1e-16
Identities = 81/324 (25%), Positives = 142/324 (43%), Gaps = 42/324 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L + EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGA 189
Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
+S +L+ +Y +G +N ++ + G+ L + + K
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSPA 247
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
P H W PD + + T V + LS V + + + + D+ F L+ AI
Sbjct: 248 PSHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAI 304
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
LSM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ G + + +F + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYISMNLG 364
Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
A I +D L +++ L +S+A+ L++ GL G K +L
Sbjct: 365 TFARIVSFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCG 424
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVVSIYYYL 448
>gb|AAG26117.1| (AF123779) NADH dehydrogenase subunit B [Ginkgo biloba]
Length = 470
Score = 88.9 bits (217), Expect = 1e-16
Identities = 87/323 (26%), Positives = 145/323 (43%), Gaps = 40/323 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
LL ++ + L G F+ + D V +E ++ SY L R EA KYLL+ T
Sbjct: 112 LLFVLTATLGGMFLCGANDLVTISVALECFSLCSYLLSGYTKRDVRSNEATMKYLLMGGT 171
Query: 164 ASYVLILALGMIYFQTGYLNVELASEVG------LRDDTPLRLAAISLIL----KAGIFP 213
+S +L+ L +Y +G +EL V + + + +A IS+ + K + P
Sbjct: 172 SSSILVYGLSWLYGLSGG-EIELQEIVNGLINTQMYNSPGILIALISITVGIGFKLSLVP 230
Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAIL 263
H W PD + + T V + LS V + + L L + + D+ F L+ AI
Sbjct: 231 FHQWTPDVYEGSPTPVVAFLS---VTSKVAALALATRIFDILFYFSSNEWHLLLEILAIP 287
Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNV---YGATL-YSLAHAMFKGGL 319
SM G ++A Q + KR+LAY ++ Q+GYI++G+ G+ Y + + Y L + G
Sbjct: 288 SMILGNLIATTQTSMKRMLAYSSIGQIGYIIIGIIAGDSNDGYASMMTYMLLYIFMNLGT 347
Query: 320 FLGV---GAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATT 374
F + G +D L +++ S+A+ L++ G+ G K YL
Sbjct: 348 FACIVLFGLRTGTDNIRDYAGLYTKDPFSAFSLALCPLSLGGIPPLAGFFGKLYLFWCGW 407
Query: 375 EKAIIYAVSFGTAFSFSKLNYYL 397
+ + VS G S + YYL
Sbjct: 408 QAGSYFLVSIGPFMSVISIYYYL 430
>gb|AAG26123.1| (AF123781) NADH dehydrogenase subunit B [Lactoris fernandeziana]
Length = 486
Score = 88.9 bits (217), Expect = 1e-16
Identities = 82/324 (25%), Positives = 141/324 (43%), Gaps = 42/324 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L R EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVASECFSLCSYLLSGYTKRDVRSNEATTKYLLMGGA 189
Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
+S +L+ +Y +G +N ++ + G+ L + + K
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSPA 247
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
P H W PD + + T V + LS V + + L + + D+ F L+ AI
Sbjct: 248 PFHQWTPDVYEGSPTPVVAFLS---VTSKVAASALATRIFDIPFYFSSNEWHLLLEILAI 304
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
LSM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ + + +F + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364
Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
A I +D L +++ L +S A+ L++ GL G K +L
Sbjct: 365 TFARIVLFGLRSGTDNIRDYAGLYTKDPFLALSSALCLLSLGGLPPLAGFFGKLHLFWCG 424
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVVSIYYYL 448
>sp|P31971|NU5C_SYNP2 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >gi|538864|pir||A40588
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Synechococcus sp. (PCC 7002) >gi|154516|gb|AAA27311.1|
(M99378) NADH dehydrogenase subunit 5 [Synechococcus
PCC7002]
Length = 664
Score = 88.5 bits (216), Expect = 1e-16
Identities = 85/329 (25%), Positives = 153/329 (45%), Gaps = 45/329 (13%)
Query: 112 LLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS-QDREAAF----KYLLLSMTASY 166
L + S ++G S + Y+F EL + SY LI DR+AA K + + +
Sbjct: 128 LSIFSSSMLGLVFSPNLVQVYIFWELVGMCSYLLIGFWYDRKAAADACQKAFVTNRVGDF 187
Query: 167 VLILALGMIYFQTGYLNVELASE-----VGLRDDTPLRLAAISLIL------KAGIFPLH 215
L+L + +Y+ TG +L + V + L ++++ K+ FPLH
Sbjct: 188 GLLLGMLGLYWATGSFEFDLMGDRLMDLVSTGQISSLLAIVFAVLVFLGPVAKSAQFPLH 247
Query: 216 VWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAF-------- 267
VWLPDA T +S+++ + A G+ L++ + + P A+ +A+
Sbjct: 248 VWLPDA-MEGPTPISALIHAATMVAA--GVFLVARMYPVFEPIPEAMNVIAWTGATTAFL 304
Query: 268 GVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
G +A+ Q + K+ LAY T+SQ+GY+++ + G + + HA FK LFLG G++I
Sbjct: 305 GATIALTQNDIKKGLAYSTMSQLGYMVMAMGIGGYTAGLFHLMTHAYFKAMLFLGSGSVI 364
Query: 328 ---------DARKRKDLKYLGS-RNILLIVSIAIL--SLAISGLGITIGGVAKSY---LA 372
+A +D++ +G R + I + L +LAI G+ G +K LA
Sbjct: 365 HGMEEVVGHNAVLAQDMRLMGGLRKYMPITATTFLIGTLAICGIPPFAGFWSKDEILGLA 424
Query: 373 TTEKAIIYAVSFGTAFSFSKLNYYLWKGY 401
+++ + + TA +Y+++ Y
Sbjct: 425 FEANPVLWFIGWATA---GMTAFYMFRMY 450
>pir||T12400 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Sarcophyton
glaucum mitochondrion >gi|4091914|gb|AAC99648.1|
(AF064823) NADH dehydrogenase subunit 5 [Sarcophyton
glaucum]
Length = 605
Score = 88.5 bits (216), Expect = 1e-16
Identities = 98/387 (25%), Positives = 169/387 (43%), Gaps = 40/387 (10%)
Query: 78 DWVSSTFLIAEFLVFGASSLYLVKRVTNWKEL----SLLLLMHSGLIGAFISKDYFNFYV 133
D V++ LI + G +Y + + L S L L ++ S +Y ++
Sbjct: 79 DEVTAVMLIVVTTISGLVHVYSTSYMRDDPHLPRFMSYLSLFTFFMLVLITSNNYLQLFI 138
Query: 134 FMELSAVSSYALI-----ASQDREAAFKYLLLSMTASYVLILALGMIYFQTG---YLNVE 185
E + SY LI Q +AA K +L++ L+LA+ +I+ + G Y ++
Sbjct: 139 GWEGVGLCSYLLINFWFTRIQANKAAIKAMLINRIGDIGLMLAIILIWKEFGVLDYCSIF 198
Query: 186 LASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGL 245
A L I + K+ LH WLPDA + I + V A ++ +
Sbjct: 199 SALTASSACTWICILLIIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLI 258
Query: 246 ILLSNLGDLSFLKPFAI-----LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG 300
I + + D S + L+ F + ++Q + K+++AY T SQ+GY+++ T
Sbjct: 259 IRSAPIFDYSPTATIIVGLVGSLTAFFAATVGLVQSDIKKVIAYSTCSQLGYMVVACGTS 318
Query: 301 NVYGATLYSLAHAMFKGGLFLGVGAIIDA-RKRKDLKYLGS--RNI-LLIVSIAILSLAI 356
+ + + + L HA FK LFLG G+II A +DL+ +G R + L V + I SL++
Sbjct: 319 SSFSSLYHLLTHAFFKALLFLGAGSIIHALLDEQDLRKMGGIVRGLPLTYVLMLIGSLSL 378
Query: 357 SGLGITIGGVAK---------SYLATTEKAIIYAVSFGTAFSFSKLNYYLWKGYGN---- 403
+G G +K Y T + +F TAF +L Y + N
Sbjct: 379 AGFPYLSGFYSKDLILELTYNGYCLITIYWLASITAFLTAFYSFRLIYLSFLSRPNLTHL 438
Query: 404 -----EPTNFSIL-PSLTLGVLTVLVG 424
+ ++++L P L L + ++LVG
Sbjct: 439 SAQHLQEADWNLLGPLLVLAIGSILVG 465
>pir||T13665 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Raddia
distichophylla chloroplast (fragment)
>gi|726178|gb|AAA64211.1| (U22007) NADH dehydrogenase F
[Raddia distichophylla]
Length = 704
Score = 88.2 bits (215), Expect = 2e-16
Identities = 83/322 (25%), Positives = 138/322 (42%), Gaps = 40/322 (12%)
Query: 116 HSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLIL 170
++ ++G S + Y F EL + SY LI A K + + + L+L
Sbjct: 124 NTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLL 183
Query: 171 ALGMIYFQTGYLNVELASEVG-----------LRDDTPLRLAAISLILKAGIFPLHVWLP 219
+ ++ TG L ++ L L + + K+ FPLHVWLP
Sbjct: 184 GILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCTFLLFLGAVAKSAQFPLHVWLP 243
Query: 220 DAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL--------SFLKPFAILSMAFGVIM 271
DA T +S+++ V A G+ LL+ L L SF+ +++ G +
Sbjct: 244 DA-MEGPTPISALIHATMVAA---GIFLLARLFPLFIHLPLIMSFVSLVGTITLFLGATL 299
Query: 272 AILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDAR- 330
A+ Q + KR LAY T+SQ+GY++L L G+ A + + HA K LFLG G++I +
Sbjct: 300 ALAQIDIKRSLAYSTMSQLGYMMLALGIGSYQAALFHLITHAYSKALLFLGSGSLIHSME 359
Query: 331 --------KRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYA 381
K +++ +G R + I L +S GI S + +Y+
Sbjct: 360 PLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWSTLSLCGIPPLACFWSKDEILSNSWLYS 419
Query: 382 VSFGTAFSFSK--LNYYLWKGY 401
FG SF+ +Y+++ Y
Sbjct: 420 PFFGIIASFTAGLTGFYMFRIY 441
>gb|AAF03741.1| (AF182335) NADH dehydrogenase subunit 4 [Drosophila pulaua]
Length = 446
Score = 88.2 bits (215), Expect = 2e-16
Identities = 85/331 (25%), Positives = 150/331 (44%), Gaps = 26/331 (7%)
Query: 33 FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
F P+ + K +++ V + F Y EI +G D +S ++ +
Sbjct: 10 FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDVLSYGLILLSLWIC 69
Query: 93 GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
++ V + N+K L LL +L+ L+ F S F FY+F E S + + LI
Sbjct: 70 ALMLTASESVNKYNNYKNLFLLNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129
Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
+ +A L ++ S +++ + + ++ G +N L + D
Sbjct: 130 WGYHPERLQAGIYLLFYTLLVSLPMLIGIFYLMYKMGTMNFYLMNNFMFNYDLLYFCMMC 189
Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
+ ++K +F +H+WLP AH A S IL+GI +K YG++ + ++ L +K I
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249
Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
+S+ GV+++ + Q + K L+AY +V+ MG L GL T + +G YSL AH +
Sbjct: 250 ISISLVGGVLISFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309
Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
GLF + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332
>gb|AAF03747.1| (AF182338) NADH dehydrogenase subunit 4 [Drosophila nasuta F]
Length = 446
Score = 88.2 bits (215), Expect = 2e-16
Identities = 85/331 (25%), Positives = 150/331 (44%), Gaps = 26/331 (7%)
Query: 33 FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
F P+ + K +++ V + F Y EI +G D +S ++ +
Sbjct: 10 FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69
Query: 93 GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
++ V + N+K L LL +L+ L+ F S + FY+F E S + + LI
Sbjct: 70 ALMLTASESVNKYNNYKNLFLLNVVLLLLLLVLTFSSMSLYMFYLFFESSLIPTLFLILG 129
Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
+ +A L ++ S +++ + + + G +N L + D
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMNNFMFNYDLLYFCMMC 189
Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
+ ++K +F +H+WLP AH A SSIL+GI +K YG++ + ++ L +K I
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSSILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249
Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
+S+ GV+++ + Q + K L+AY +V+ MG L GL T + +G YSL AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309
Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
GLF + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332
>gb|AAF77299.1| (AF200833) NADH dehydrogenase subunit 4 [Drosophila simulans]
>gi|8573467|gb|AAF77313.1| (AF200834) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573481|gb|AAF77326.1| (AF200835) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573494|gb|AAF77338.1| (AF200836) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573508|gb|AAF77351.1| (AF200837) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573521|gb|AAF77363.1| (AF200838) NADH dehydrogenase
subunit 4 [Drosophila simulans]
Length = 446
Score = 88.2 bits (215), Expect = 2e-16
Identities = 85/331 (25%), Positives = 148/331 (44%), Gaps = 26/331 (7%)
Query: 33 FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
F PL + +++ + + + F Y EI +G D +S ++ +
Sbjct: 10 FLTPLCFMNNMYWMVQIMMVFISFIFLVMNNFMNYWSEISYFLGCDMLSYGLILLSLWIC 69
Query: 93 GASSLYL--VKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
L + + N+K L LL +++ LI F S F FY+F E S + + LI
Sbjct: 70 SLMLLASESINKYNNYKNLFLLNIVILLLLLILTFSSMSLFMFYLFFESSLIPTLFLILG 129
Query: 149 ----QDREAAFKYLLL-SMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
+R A YLL ++ S +++ + + + G +N L + D
Sbjct: 130 WGYQPERLQAGVYLLFYTLLVSLPMLIGIFYVMNKIGSMNFYLMNNFMFNYDLLYFCLLC 189
Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGL---ILLSNLGDLSFLKPF 260
+ ++K +F +H+WLP AH A S IL+GI +K YGL I L +L + +
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVIAFLQLMNLKYSFVW 249
Query: 261 AILSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYGAT---LYSLAHAM 314
+S+ GV+++++ Q + K L+AY +V+ MG +L GL T +G + +AH +
Sbjct: 250 ISISLVGGVLVSLVCLRQTDLKALIAYSSVAHMGIVLSGLLTMTYWGLSGSYTLMIAHGL 309
Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
GLF + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSMLI 332
>gb|AAG26096.1| (AF123772) NADH dehydrogenase subunit B [Asarum canadense]
Length = 485
Score = 88.2 bits (215), Expect = 2e-16
Identities = 82/324 (25%), Positives = 140/324 (42%), Gaps = 42/324 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L R EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDVRSNEATTKYLLMGGA 189
Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
+S +L+ +Y +G +N ++ + G+ L + + K
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSPA 247
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
P H W PD + + T V + LS V + + + + D+ F L+ AI
Sbjct: 248 PFHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAI 304
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
LSM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ + + +F + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364
Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
A I +D L +++ L +S A+ L++ GL G K YL
Sbjct: 365 TFARIVLFGLRTGTDNIRDYAGLYTKDPFLALSSALCLLSLGGLPPLAGFFGKLYLFWCG 424
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVVSIYYYL 448
>gb|AAA84181.1| (L36397) NADH dehydrogenase subunit [Catalpa sp. Olmstead 92-99]
Length = 648
Score = 87.8 bits (214), Expect = 3e-16
Identities = 77/288 (26%), Positives = 129/288 (44%), Gaps = 33/288 (11%)
Query: 70 EIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAF 123
+ +E G +D +SS LI +V S Y+ + + + + ++G
Sbjct: 72 DFSLEFGYLIDPLSSIMLILITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFSTSMLGLV 131
Query: 124 ISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQ 178
S + Y+F EL + SY LI A K + + + L+L + Y+
Sbjct: 132 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAXNACQKAFVTNRVGDFGLLLGILGFYWI 191
Query: 179 TG----------YLNVELASEVGLRDDTPLR-LAAISLILKAGIFPLHVWLPDAHSNAKT 227
TG + N+ +EV T L + K+ FPLHVWLPDA T
Sbjct: 192 TGSFEFRDLFEIFNNLISNNEVNFPFGTLCAALLFAGAVAKSAQFPLHVWLPDA-MEGPT 250
Query: 228 YVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGVIMAILQFNAK 279
+S+++ + A G+ L++ L L + P+ ++++ G +A+ Q + K
Sbjct: 251 PISALIHAATMVAA--GIFLVARLLPLFIVIPYIMNFISLIGLITVLLGATLALAQKDIK 308
Query: 280 RLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
R LAY T+SQ+GY++L L G+ A + + HA K LFLG G++I
Sbjct: 309 RGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSVI 356
>gb|AAF03729.1| (AF182329) NADH dehydrogenase subunit 4 [Drosophila sulfurigaster
sulfurigaster]
Length = 446
Score = 87.8 bits (214), Expect = 3e-16
Identities = 84/331 (25%), Positives = 150/331 (44%), Gaps = 26/331 (7%)
Query: 33 FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
F P+ + K +++ V + F Y EI +G D +S ++ +
Sbjct: 10 FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69
Query: 93 GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
++ V + N+K L L+ +L+ L+ F S F FY+F E S + + LI
Sbjct: 70 ALMLTASESVNKYNNYKNLFLVNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129
Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
+ +A L ++ S +++ + + ++ G +N L + D
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMYKMGTMNFYLMNNFMFNYDLLYFCMMC 189
Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
+ ++K +F +H+WLP AH A S IL+GI +K YG++ + ++ L +K I
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249
Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
+S+ GV+++ + Q + K L+AY +V+ MG L GL T + +G YSL AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309
Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
GLF + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332
>gb|AAF03737.1| (AF182333) NADH dehydrogenase subunit 4 [Drosophila niveifrons]
Length = 446
Score = 87.8 bits (214), Expect = 3e-16
Identities = 90/335 (26%), Positives = 152/335 (44%), Gaps = 34/335 (10%)
Query: 33 FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVS------STFLI 86
F P+ + K +++ V + F Y EI +G D +S S ++
Sbjct: 10 FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69
Query: 87 AEFLVFGASSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYA 144
A L+ S V + N+K L LL +L+ LI F S + F FY+F E S + +
Sbjct: 70 ALMLMASES----VNKYNNYKNLFLLNVVLLLLLLILTFSSMNLFMFYLFFESSLIPTLF 125
Query: 145 LIAS-----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLR 199
LI + +A L ++ S +++ + + + G +N L + D
Sbjct: 126 LILGWGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMNNFMFNYDLLYF 185
Query: 200 LAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKP 259
+ ++K +F +H+WLP AH A S IL+GI +K YG++ + ++ L +K
Sbjct: 186 CMMCAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILPLLNMKY 245
Query: 260 FAI---LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL-- 310
I +S+ GV+++ + Q + K L+AY +V+ MG L GL T + +G YSL
Sbjct: 246 SFIWISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMI 305
Query: 311 AHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
AH + GLF + LGSR++L+
Sbjct: 306 AHGLCSSGLF--------CLANVSYERLGSRSLLI 332
>pir||B82495 probable NADH dehydrogenase VCA0157 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657546|gb|AAF96070.1|
(AE004356) NADH dehydrogenase, putative [Vibrio
cholerae]
Length = 891
Score = 87.8 bits (214), Expect = 3e-16
Identities = 108/368 (29%), Positives = 174/368 (46%), Gaps = 39/368 (10%)
Query: 41 VKALYLLGVFLPMLLFP-LSRGGVVGGYPREIGIEVGLDWVSS------TFLIAEFLVFG 93
V A L LP+LLF + GG ++ GLD S +FL A L+ G
Sbjct: 16 VSARLLPFAVLPILLFGWVFYWHQTGGNAWQVTWVPGLDLNLSFRLDGLSFLFAS-LITG 74
Query: 94 ASSLYLVKRVTNWKELSL-------LLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALI 146
+L + + KE + L L ++G +S + ++F EL+ ++SY LI
Sbjct: 75 IGALIQIYALAYMKEKAARFSFHLYLTLFMLAMLGVVVSDNILLLFIFWELTTITSYLLI 134
Query: 147 A-SQDREAAFKYLLLSM--TASYVLILALGMIYFQTGYLNVELASEVGLRDDT---PLRL 200
+ D+ + K L S+ T + L L G+I + +++ + D P +
Sbjct: 135 GFNHDKPVSRKNALQSLLVTGAGGLALLAGLILLGLMANSYQISVIIEHADHIAQHPWFM 194
Query: 201 AAISLIL-----KAGIFPLHVWLPDAHSNAKTYVSSIL-SGIAVKAPIYGLILLSNL--- 251
++ L+L K+ FP H WLP+A + A T VS+ L S VKA IY L LS +
Sbjct: 195 PSLILVLLGAFTKSAQFPFHFWLPNAMA-APTPVSAYLHSATMVKAGIYLLARLSPIYAS 253
Query: 252 GDLSF--LKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMG--YILLGLSTG-NVYGAT 306
D F L ++ + ++A Q + K +LAY T +G +LLGL T + A
Sbjct: 254 SDFWFYCLTIVGAVTALWCALLAFKQTDLKLMLAYSTNVALGKLTLLLGLGTEVALTAAV 313
Query: 307 LYSLAHAMFKGGLFLGVGAIIDA---RKRKDLKYLGSRNILLIVSIAILSLAISGLGITI 363
L+ AH+ +K LF+ VG I A R+R+ L L S +L +++ I +L+ SG+ +
Sbjct: 314 LFIFAHSFYKAALFMVVGNIDKATGTREREKLGNLKSVLLLSLIAAVIAALSKSGVAPML 373
Query: 364 GGVAKSYL 371
G ++K Y+
Sbjct: 374 GFLSKEYM 381
>gb|AAG26129.1| (AF123783) NADH dehydrogenase subunit B [Saururus cernuus]
Length = 482
Score = 87.8 bits (214), Expect = 3e-16
Identities = 81/324 (25%), Positives = 140/324 (43%), Gaps = 42/324 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L R EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDVRSNEATTKYLLMGGA 189
Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
+S +L+ +Y +G +N ++ + G+ L + + K
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSPA 247
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
P H W PD + + T V + LS V + + + + D+ F L+ AI
Sbjct: 248 PFHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAI 304
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
LSM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ + + +F + +G
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNVG 364
Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
A I +D L +++ L +S A+ L++ GL G K YL
Sbjct: 365 TFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSSALCLLSLGGLPPLAGFFGKLYLFWCG 424
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
+ + + VS G S + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVVSIYYYL 448
>pir||S26025 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - pig
roundworm mitochondrion
Length = 528
Score = 87.4 bits (213), Expect = 3e-16
Identities = 85/328 (25%), Positives = 152/328 (45%), Gaps = 31/328 (9%)
Query: 96 SLYLVKRVTNWKELSLLLLMHSGLIGAFI-SKDYFNFYVFMELSAVSSYALIASQDR--- 151
S Y + N+ +LL+ G + + I S F+ V +L +SS+ L+ +
Sbjct: 66 STYYLSGELNFNYYYFMLLVFVGSMFSLIFSSGCFSMLVSWDLLGISSFFLVLFYNNWDS 125
Query: 152 -EAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLILKAG 210
A +L + + L + F + Y + L+ L L LA+ + K+
Sbjct: 126 CSGAMNTVLTNRLGDFFLFVFFSSTIFSSYYF-LSLSFFCWL-SSLMLLLASFT---KSA 180
Query: 211 IFPLHVWLPDAHSNAKTYVSSIL-SGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFGV 269
FP WLP A S A T +SS++ S V A GL+L+ N ++ K ++ M GV
Sbjct: 181 QFPFSGWLPKAMS-APTPISSLVHSSTLVTA---GLVLIMNFSEMILNKDVIMIIMVVGV 236
Query: 270 -------IMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
+ A+++ + K+++A T+SQMG+ +L + G + + ++ L+HA+FK LF+
Sbjct: 237 FTMFFSSMAALVEEDLKKVVALSTLSQMGFSMLTVGIGLSFVSFIHLLSHALFKSCLFMQ 296
Query: 323 VGAIIDA----RKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAI 378
VG +I + ++ LG+ + + + + + GL + G V+K Y+ +
Sbjct: 297 VGYLIHCSLGQQDGRNYSNLGNVPYFIQLQLLVTLFCLCGLVFSSGAVSKDYILEFFFSN 356
Query: 379 IYAVSFGTAFSFSKL-----NYYLWKGY 401
+ V F F FS +Y LWKG+
Sbjct: 357 FFMVVFACMFFFSVFLTFGYSYRLWKGF 384
>gi|5834883 NADH dehydrogenase subunit 5 [Ascaris suum]
>gi|1171821|sp|P24884|NU5M_ASCSU NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 5 >gi|559499|emb|CAA38174.1|
(X54253) ND5 protein [Ascaris suum]
Length = 547
Score = 87.4 bits (213), Expect = 3e-16
Identities = 85/328 (25%), Positives = 152/328 (45%), Gaps = 31/328 (9%)
Query: 96 SLYLVKRVTNWKELSLLLLMHSGLIGAFI-SKDYFNFYVFMELSAVSSYALIASQDR--- 151
S Y + N+ +LL+ G + + I S F+ V +L +SS+ L+ +
Sbjct: 66 STYYLSGELNFNYYYFMLLVFVGSMFSLIFSSGCFSMLVSWDLLGISSFFLVLFYNNWDS 125
Query: 152 -EAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLILKAG 210
A +L + + L + F + Y + L+ L L LA+ + K+
Sbjct: 126 CSGAMNTVLTNRLGDFFLFVFFSSTIFSSYYF-LSLSFFCWL-SSLMLLLASFT---KSA 180
Query: 211 IFPLHVWLPDAHSNAKTYVSSIL-SGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFGV 269
FP WLP A S A T +SS++ S V A GL+L+ N ++ K ++ M GV
Sbjct: 181 QFPFSGWLPKAMS-APTPISSLVHSSTLVTA---GLVLIMNFSEMILNKDVIMIIMVVGV 236
Query: 270 -------IMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
+ A+++ + K+++A T+SQMG+ +L + G + + ++ L+HA+FK LF+
Sbjct: 237 FTMFFSSMAALVEEDLKKVVALSTLSQMGFSMLTVGIGLSFVSFIHLLSHALFKSCLFMQ 296
Query: 323 VGAIIDA----RKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAI 378
VG +I + ++ LG+ + + + + + GL + G V+K Y+ +
Sbjct: 297 VGYLIHCSLGQQDGRNYSNLGNVPYFIQLQLLVTLFCLCGLVFSSGAVSKDYILEFFFSN 356
Query: 379 IYAVSFGTAFSFSKL-----NYYLWKGY 401
+ V F F FS +Y LWKG+
Sbjct: 357 FFMVVFACMFFFSVFLTFGYSYRLWKGF 384
>gb|AAA64192.1| (U21988) NADH dehydrogenase F [Danthoniopsis petiolata]
Length = 704
Score = 87.4 bits (213), Expect = 3e-16
Identities = 84/322 (26%), Positives = 138/322 (42%), Gaps = 39/322 (12%)
Query: 116 HSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLIL 170
++ ++G S + Y F EL + SY LI A K + + + L+L
Sbjct: 128 NTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLL 187
Query: 171 ALGMIYFQTGYLNVELASEVG-----------LRDDTPLRLAAISLILKAGIFPLHVWLP 219
+ ++ TG L ++ L L + I K+ FPLHVWLP
Sbjct: 188 GILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLFAFLLFLGAIAKSAQFPLHVWLP 247
Query: 220 DAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL--------SFLKPFAILSMAFGVIM 271
DA T +S+++ + A G+ LL+ L L SF+ +++ G +
Sbjct: 248 DA-MEGPTPISALIHAATMVAA--GIFLLARLFPLFISLPLIMSFISLVGTITLFLGATL 304
Query: 272 AILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDAR- 330
A+ Q + KR LAY T+SQ+GY++L L G+ A + + HA K LFLG G+II +
Sbjct: 305 ALAQRDIKRSLAYSTMSQLGYMMLALGIGSYQAALFHLITHAYSKALLFLGSGSIIHSME 364
Query: 331 --------KRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYA 381
K +++ +G R + I L +S GI S + +Y+
Sbjct: 365 PLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCATLSLCGIPPLACFWSKDEILSNSWLYS 424
Query: 382 VSFGTAFSFSK--LNYYLWKGY 401
FG SF+ +Y+++ Y
Sbjct: 425 PFFGIIASFTAGLTAFYMFRIY 446
>gi|11466005 NADH dehydrogenase ND2 subunit [Nicotiana tabacum]
>gi|11466028|ref|NP_054570.1| NADH dehydrogenase ND2
subunit [Nicotiana tabacum]
>gi|3915776|sp|P06256|NU2C_TOBAC NADH-PLASTOQUINONE
OXIDOREDUCTASE CHAIN 2, CHLOROPLAST
>gi|2924275|emb|CAA77428.1| (Z00044) NADH dehydrogenase
ND2 subunit [Nicotiana tabacum]
>gi|2924284|emb|CAA77437.1| (Z00044) NADH dehydrogenase
ND2 subunit [Nicotiana tabacum]
Length = 510
Score = 87.4 bits (213), Expect = 3e-16
Identities = 80/324 (24%), Positives = 140/324 (42%), Gaps = 42/324 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L + EA KYLL+
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGA 189
Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
+S +L+ +Y +G +N ++ + G+ L + + K
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSPA 247
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
P H W PD + + T V + LS V + + + + D+ F L+ AI
Sbjct: 248 PSHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAI 304
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
LSM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ + + +F + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364
Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
A I +D L +++ L +S+A+ L++ GL G K YL
Sbjct: 365 TFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCG 424
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
+ + + V G S + YYL
Sbjct: 425 WQAGLYFLVLIGLLTSVVSIYYYL 448
>pir||T14229 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Oldenlandia
corymbosa chloroplast (fragment)
>gi|3954991|emb|CAA10213.1| (AJ130837) NADH
dehydrogenase [Oldenlandia corymbosa]
Length = 721
Score = 87.4 bits (213), Expect = 3e-16
Identities = 84/328 (25%), Positives = 147/328 (44%), Gaps = 46/328 (14%)
Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILA 171
+ ++G S + Y+F L VSSY LI A K + + + L+L
Sbjct: 133 TSMLGLVTSSNLIQIYIFWXLVGVSSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLG 192
Query: 172 LGMIYFQTGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVWLPD 220
+ ++ TG E+ L D + ++L + K+ FPLHVWLPD
Sbjct: 193 ILGFFWITGSFEFRDLFEILNNLILDNEVNFGFVTLCAVLLFAGAVAKSAQFPLHVWLPD 252
Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGVIMA 272
A + I + V A G+ L++ L L + P+ I+++ G +A
Sbjct: 253 AMEGPTPISALIXAATMVXA---GIFLVARLLPLFIVIPYIMNLISLVGIITLLLGATLA 309
Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA--- 329
+ Q + KR LAY T+S GY++L L G+ A + + HA K LFLG G+II +
Sbjct: 310 LAQKDIKRGLAYSTMSPXGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSMET 369
Query: 330 ------RKRKDLKYLG--------SRNILLIVSIAILSL-AISGLGITIGGVAKSYLATT 374
K +++ +G +++ LI ++++ + ++ +A S+L +T
Sbjct: 370 IVGYSPHKSQNMALMGGLTKHGPITKSTFLIGTLSLCGIPPLACFWSKDEILADSWLYST 429
Query: 375 EKAIIYAVSFG-TAFSFSKLNYYLWKGY 401
AII +V+ G TAF ++ ++G+
Sbjct: 430 SFAIIASVTAGLTAFYMFRIYLLTFEGH 457
>gb|AAF03713.1| (AF182321) NADH dehydrogenase subunit 4 [Drosophila albomicans]
>gi|6103676|gb|AAF03719.1| (AF182324) NADH dehydrogenase
subunit 4 [Drosophila albomicans]
>gi|6103688|gb|AAF03727.1| (AF182328) NADH dehydrogenase
subunit 4 [Drosophila sulfurigaster neonasuta]
>gi|6103700|gb|AAF03735.1| (AF182332) NADH dehydrogenase
subunit 4 [Drosophila nasuta] >gi|6103712|gb|AAF03743.1|
(AF182336) NADH dehydrogenase subunit 4 [Drosophila
nasuta I] >gi|6103715|gb|AAF03745.1| (AF182337) NADH
dehydrogenase subunit 4 [Drosophila nasuta J]
Length = 446
Score = 87.4 bits (213), Expect = 3e-16
Identities = 85/331 (25%), Positives = 149/331 (44%), Gaps = 26/331 (7%)
Query: 33 FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
F P+ + K +++ V + F Y EI +G D +S ++ +
Sbjct: 10 FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69
Query: 93 GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
++ V + N+K L LL +L+ L+ F S F FY+F E S + + LI
Sbjct: 70 ALMLTASESVNKYNNYKNLFLLNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129
Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
+ +A L ++ S +++ + + + G +N L + D
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMNNFMFNYDLLYFCMMC 189
Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
+ ++K +F +H+WLP AH A S IL+GI +K YG++ + ++ L +K I
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249
Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
+S+ GV+++ + Q + K L+AY +V+ MG L GL T + +G YSL AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309
Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
GLF + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332
>gb|AAF03721.1| (AF182325) NADH dehydrogenase subunit 4 [Drosophila sulfurigaster
albostrigata]
Length = 446
Score = 87.4 bits (213), Expect = 3e-16
Identities = 85/331 (25%), Positives = 149/331 (44%), Gaps = 26/331 (7%)
Query: 33 FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
F P+ + K +++ V + F Y EI +G D +S ++ +
Sbjct: 10 FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69
Query: 93 GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
++ V + N+K L LL +L+ L+ F S F FY+F E S + + LI
Sbjct: 70 ALMLTASESVNKYNNYKNLFLLNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129
Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
+ +A L ++ S +++ + + + G +N L + D
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMNNFMFNYDLLYFCMMC 189
Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
+ ++K +F +H+WLP AH A S IL+GI +K YG++ + ++ L +K I
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249
Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
+S+ GV+++ + Q + K L+AY +V+ MG L GL T + +G YSL AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309
Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
GLF + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332
>pir||S01187 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - fruit fly
(Drosophila melanogaster) mitochondrion
>gi|7799410|emb|CAB91059.1| (AJ400907) NADH
dehydrogenase subunit 4 [Drosophila melanogaster]
>gi|8573382|gb|AAF77234.1| (AF200828) NADH dehydrogenase
subunit 4 [Drosophila melanogaster]
>gi|8573395|gb|AAF77246.1| (AF200829) NADH dehydrogenase
subunit 4 [Drosophila melanogaster]
Length = 446
Score = 87.0 bits (212), Expect = 4e-16
Identities = 80/297 (26%), Positives = 139/297 (45%), Gaps = 26/297 (8%)
Query: 67 YPREIGIEVGLDWVSSTFLIAEFLVFGASSLY--LVKRVTNWKELSLL--LLMHSGLIGA 122
Y EI +G D +S ++ + L ++ + N+K L LL +++ LI
Sbjct: 44 YWSEISYFLGCDMLSYGLILLSLWICSLMLLASEMINKHNNYKNLFLLNIIILLLLLILT 103
Query: 123 FISKDYFNFYVFMELSAVSSYALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYF 177
F S F FY+F E S + + LI +R A YLL ++ S +++ + +
Sbjct: 104 FSSMSLFMFYLFFESSLIPTLFLILGWGYQPERLQAGLYLLFYTLLVSLPMLIGIFYVMN 163
Query: 178 QTGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIA 237
+ G +N L + D + ++K +F +H+WLP AH A S IL+GI
Sbjct: 164 KIGSMNFYLMNNFMFNYDLLYFCLLCAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIM 223
Query: 238 VKAPIYGLILLSNLGDLSFLK---PFAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMG 291
+K YG++ + + L LK + +S+ GV+++++ Q + K L+AY +V+ MG
Sbjct: 224 LKLGGYGMLRVISFLQLMNLKYSFVWISISLVGGVLVSLVCLRQTDLKALIAYSSVAHMG 283
Query: 292 YILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
+L GL T + G+ +AH + GLF + LGSR++L+
Sbjct: 284 IVLSGLLTMTYWGLCGSYTLMIAHGLCSSGLF--------CLANVSYERLGSRSMLI 332
>gi|11497569 NADH dehydrogenase ND2 subunit [Spinacia oleracea]
>gi|11497596|ref|NP_055002.1| NADH dehydrogenase ND2
subunit [Spinacia oleracea] >gi|7636150|emb|CAB88772.1|
(AJ400848) NADH dehydrogenase ND2 subunit [Spinacia
oleracea] >gi|7636177|emb|CAB88799.1| (AJ400848) NADH
dehydrogenase ND2 subunit [Spinacia oleracea]
Length = 510
Score = 87.0 bits (212), Expect = 4e-16
Identities = 80/324 (24%), Positives = 140/324 (42%), Gaps = 42/324 (12%)
Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMT 163
LL ++ + L G F+ + D +V E ++ SY L + EA KYLL+
Sbjct: 130 LLFILTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGA 189
Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
+S +L+ +Y +G +N ++ + G+ L + + K
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSPA 247
Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
P H W PD + + T V + LS V + + + + D+ F L+ AI
Sbjct: 248 PSHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAI 304
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
LSM G ++AI Q + KR+LAY ++ Q+GY+++G+ G+ + + +F + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364
Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
A I +D L +++ L +S+A+ L++ GL G K YL
Sbjct: 365 TFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKIYLFWCG 424
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
+ + + V G S + YYL
Sbjct: 425 WQAGLYFLVLIGLLTSVLSIYYYL 448
>gi|11465866 NADH dehydrogenase subunit 5 [Ochromonas danica]
>gi|10505199|gb|AAG18381.1|AF287134_6 (AF287134) NADH
dehydrogenase subunit 5 [Ochromonas danica]
Length = 667
Score = 87.0 bits (212), Expect = 4e-16
Identities = 101/395 (25%), Positives = 166/395 (41%), Gaps = 74/395 (18%)
Query: 109 LSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALI-----ASQDREAAFKYLLLSMT 163
+S L L ++ ++ +V E +SSY LI Q ++A K +L++
Sbjct: 113 MSYLSLFTFFMLILITGDNFLQMFVGWEGVGISSYLLINFWFTRIQANKSAIKAMLVNRI 172
Query: 164 ASYVLILALGMIYFQTGYLNVELASEVGLRDDTPL-----------RLAAISLIL----- 207
+ L+LA+ ++ L+ ++ V TPL + I +I
Sbjct: 173 GDFFLLLAIFTLFITFNTLDYDIIFSV-----TPLFINYNIGLFNYHIGLIDIICIFIFL 227
Query: 208 ----KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGD-----LSFLK 258
K+ LH WLPDA + I + V A ++ ++ S L + LS +
Sbjct: 228 GAMGKSAQIGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLIVRCSYLFEHSPIALSIVT 287
Query: 259 PFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILL--GLSTGNVYGATLYSLA-HAMF 315
++ F + Q + K+++AY T SQ+GY++ GLS+ Y +++ L+ HA F
Sbjct: 288 VIGSMTAFFAATTGLFQNDMKKVIAYSTCSQLGYMIFSCGLSS---YEVSIFHLSNHAFF 344
Query: 316 KGGLFLGVGAIIDA-RKRKDLKYLGSRNILLIVSIAIL---SLAISGLGITIGGVAKSYL 371
K LFLG GA+I A +D++ +G LL S AI SLA+ G G +K +
Sbjct: 345 KALLFLGAGAVIHALSDEQDMRKMGGLKNLLPFSYAISLIGSLALVGFPFLTGFYSKDVI 404
Query: 372 --ATTEKAIIYA---------VSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGVLT 420
+ IY +F TAF ++L Y ++ Y N N
Sbjct: 405 LEISASTYTIYGQFAFFLGILATFCTAFYSTRLLYLVFLSYPNGNKN------------- 451
Query: 421 VLVGIELGGKLSKYDLLIPLAFLTFYAL-RGYLTR 454
I L + L PL L F+++ GYLT+
Sbjct: 452 ----IILNAHEGSFRLTFPLGILCFFSIFIGYLTK 482
>pir||T13409 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Micraira
lazaridisii chloroplast (fragment)
>gi|755837|gb|AAA64777.1| (U21972) NADH dehydrogenase F
[Micraira lazaridisii]
Length = 702
Score = 86.6 bits (211), Expect = 6e-16
Identities = 85/322 (26%), Positives = 140/322 (43%), Gaps = 40/322 (12%)
Query: 116 HSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLIL 170
++ ++G S + Y F EL + SY LI A K + + + L+L
Sbjct: 126 NTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLL 185
Query: 171 ALGMIYFQTGYLNVELASEVGLR-------DDTPLRLAAISLIL----KAGIFPLHVWLP 219
+ ++ TG L ++ + L A L L K+ FPLH+WLP
Sbjct: 186 GILGFFWITGSLEFRDLFKIANNWIPNNEMNSLLTTLCAFFLFLGAVAKSAQFPLHIWLP 245
Query: 220 DAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL--------SFLKPFAILSMAFGVIM 271
DA T +S+++ V A G+ LL+ L L SF+ +++ G +
Sbjct: 246 DA-MEGPTPISALIHATMVAA---GIFLLARLLPLFISLPLIMSFISLVGTITLFLGATL 301
Query: 272 AILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDAR- 330
A+ Q + KR LAY T+SQ+GY++L L G+ A + + HA K LFLG G++I +
Sbjct: 302 ALAQRDIKRSLAYSTMSQLGYMMLALGIGSYQAALFHLITHAYSKALLFLGSGSVIHSME 361
Query: 331 --------KRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYA 381
K +++ +G R + I A L +S GI S + +Y+
Sbjct: 362 PLVGYSPDKSQNMVLMGGLRKYVPITRTAFLWGTLSLCGIPPLACFWSKDEILSNSWLYS 421
Query: 382 VSFGTAFSFSK--LNYYLWKGY 401
FG SF+ +Y+++ Y
Sbjct: 422 PFFGIIASFTAGLTAFYMFRIY 443
>gb|AAF03723.1| (AF182326) NADH dehydrogenase subunit 4 [Drosophila sulfurigaster
albostrigata]
Length = 446
Score = 86.6 bits (211), Expect = 6e-16
Identities = 80/306 (26%), Positives = 140/306 (45%), Gaps = 18/306 (5%)
Query: 33 FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
F P+ + K +++ V + F Y EI +G D +S ++ +
Sbjct: 10 FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69
Query: 93 GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
++ V + N+K L LL +L+ L+ F S F FY+F E S + + LI
Sbjct: 70 ALMLTASESVNKYNNYKNLFLLNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129
Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
+ +A L ++ S +++ + + + G +N L + D
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMNNFMFNYDLLYFCMMC 189
Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
+ ++K +F +H+WLP AH A S IL+GI +K YG++ + ++ L +K I
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249
Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
+S+ GV+++ + Q + K L+AY +V+ MG L GL T + +G YSL AH +
Sbjct: 250 ISISLVGGVLISFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309
Query: 315 FKGGLF 320
GLF
Sbjct: 310 CSSGLF 315
>gb|AAF77272.1| (AF200831) NADH dehydrogenase subunit 4 [Drosophila mauritiana]
>gi|8573634|gb|AAF77468.1| (AF200846) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573648|gb|AAF77481.1| (AF200847) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573662|gb|AAF77494.1| (AF200848) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573677|gb|AAF77508.1| (AF200849) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573690|gb|AAF77520.1| (AF200850) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573705|gb|AAF77534.1| (AF200851) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573718|gb|AAF77546.1| (AF200852) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573732|gb|AAF77559.1| (AF200853) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573746|gb|AAF77572.1| (AF200854) NADH dehydrogenase
subunit 4 [Drosophila simulans]
Length = 446
Score = 86.6 bits (211), Expect = 6e-16
Identities = 79/297 (26%), Positives = 138/297 (45%), Gaps = 26/297 (8%)
Query: 67 YPREIGIEVGLDWVSSTFLIAEFLVFGASSLYL--VKRVTNWKELSLL--LLMHSGLIGA 122
Y EI +G D +S ++ + L + + N+K L LL +++ LI
Sbjct: 44 YWSEISYFLGCDMLSYGLILLSLWICSLMLLASESINKYNNYKNLFLLNIVILLLLLILT 103
Query: 123 FISKDYFNFYVFMELSAVSSYALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYF 177
F S F FY+F E S + + LI +R A YLL ++ S +++ + +
Sbjct: 104 FSSMSLFMFYLFFESSLIPTLFLILGWGYQPERLQAGVYLLFYTLLVSLPMLIGIFYVMN 163
Query: 178 QTGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIA 237
+TG +N L + D + ++K +F +H+WLP AH A S IL+GI
Sbjct: 164 KTGSMNFYLMNNFMFNYDLLYFCLLCAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIM 223
Query: 238 VKAPIYGL---ILLSNLGDLSFLKPFAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMG 291
+K YG+ I L ++ + + +S+ G++++++ Q + K L+AY +V+ MG
Sbjct: 224 LKLGGYGMLRVIAFLQLMNMKYSFVWISISLVGGMLVSLVCLRQTDLKALIAYSSVAHMG 283
Query: 292 YILLGLSTGNVYGAT---LYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
+L GL T +G + +AH + GLF + LGSR++L+
Sbjct: 284 IVLSGLLTMTYWGLSGSYTLMIAHGLCSSGLF--------CLANVSYERLGSRSMLI 332
>emb|CAC14148.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 568
Score = 86.6 bits (211), Expect = 6e-16
Identities = 104/407 (25%), Positives = 180/407 (43%), Gaps = 57/407 (14%)
Query: 72 GIEVGL--DWVSSTFLIAEFLVFGASSLYLVKRVTNWKE------LSLLLLMHSGLIGAF 123
GI+V L D + F L++ +++Y + + + E + + +G
Sbjct: 68 GIDVALRADALGMVFATVSSLLWIVAAVYSIGYMRHLHEHAQTRFFACFATSLAAAVGGA 127
Query: 124 ISKDYFNFYVFMELSAVSSYALIASQDREAAF----KYLLLSMTASY-VLILALGMIYFQ 178
+ + F +F E+ ++ +Y L+ + E + KYL+ M AS VL+ AL + Y
Sbjct: 128 FAANLFTLVIFYEVLSLVTYPLVYHHEDEEGWRGSRKYLVYLMGASKSVLLAALALTYHI 187
Query: 179 TGYLNVELASEVGLRDDTPLRLAAISL-----ILKAGIFPLHVWLPDAHSNAKTYVSSIL 233
G L+ + + + L + KA + P+H WLP A A T VS++L
Sbjct: 188 AGSLDFVRGGLLTGANASATLLTVVYFCYLFGFAKAAVMPMHAWLPAAMV-APTPVSALL 246
Query: 234 SGIAVKAP--------IYGLILLSNLGDL------SFLKPFAILSMAFGVIMAILQFNAK 279
+AV I+ + +S +G+L ++L F IL + + A+ + + K
Sbjct: 247 HAVAVVKMGVFCVLRVIFHVFGVSTVGELGLGAATAYLVSFTILMAS---VYALTRDDLK 303
Query: 280 RLLAYHTVSQMGYILLG---LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA---RKRK 333
LAY TVSQ+ YI+LG LS + G ++ AHA K LF G+I A R
Sbjct: 304 ARLAYSTVSQLSYIVLGAVLLSPLAMVGGIIHIAAHAFSKITLFFCAGSIYCASGKRNIS 363
Query: 334 DLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYLATTE--------KAIIYAVSFG 385
D+ +G R + + + SL++ G+ T G V+K YLA A++ A S
Sbjct: 364 DMAGIGRRLPWTMGAFFVASLSMIGIPPTAGFVSKWYLAEGSVEAGQMAFLAVLLASSVL 423
Query: 386 TAFSFSKLNYYLWKGYGNEPTNFSI-------LPSLTLGVLTVLVGI 425
A F ++Y + + + + +P + +L+VL+GI
Sbjct: 424 NAAYFLPVSYTAFFEAETKESRAPVREIPLVAIPLVATAILSVLMGI 470
>sp|Q56229|NQOE_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 14 (NADH DEHYDROGENASE 1,
CHAIN 14) (NDH-1, CHAIN 14) >gi|7431998|pir||T11911 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO14 -
Thermus aquaticus thermophilus
>gi|1279874|gb|AAA97951.1| (U52917) NADH dehydrogenase
I, subunit NQO14 [Thermus thermophilus]
Length = 431
Score = 86.2 bits (210), Expect = 7e-16
Identities = 97/348 (27%), Positives = 149/348 (41%), Gaps = 30/348 (8%)
Query: 41 VKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLV 100
VK LLG+ L + L+ G P + D VS F + L +L+ V
Sbjct: 25 VKRATLLGLALALASLLLTWGKPFAFGPYAV------DGVSQVFTLLALL----GALWTV 74
Query: 101 KRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSS--YALIA---SQDREAAF 155
V + LL++++ L ++ + + L A+S YAL Q EAA
Sbjct: 75 GLVRSGGFEFYLLVLYAALGMHLLASTRHLLLMLVALEALSLPLYALATWRRGQGLEAAL 134
Query: 156 KYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLIL-----KAG 210
KY LL A+ + + Y TG L +G + PL A+ L+L KA
Sbjct: 135 KYFLLGALAAAFFLYGAALFYGDTGSL------VLGAPGEGPLYALALGLLLVGLGFKAA 188
Query: 211 IFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFGVI 270
+ P H W PD + + T V ++ +VKA + LL + LS+ G +
Sbjct: 189 LAPFHFWTPDVYQGSPTPVVLFMA-TSVKAAAFAA-LLRVAAPPEAVALLVALSVVVGNL 246
Query: 271 MAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII-DA 329
A+ Q AKRLLAY +++ GY+ L L TGN Y L + + G F + I D
Sbjct: 247 AALAQKEAKRLLAYSSIAHAGYMALALYTGNAQALGFYLLTYVLATGLAFAVLSQISPDR 306
Query: 330 RKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKA 377
+ L+ L ++ LL ++ + L++ GL + G YLA E A
Sbjct: 307 VPLEALRGLYRKDPLLGLAFLVAMLSLLGLP-PLAGFWGKYLAFAEAA 353
>gi|11465633 NADH dehydrogenase subunit 2 [Porphyra purpurea]
>gi|7432119|pir||T11228 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 2 - red alga (Porphyra purpurea)
mitochondrion >gi|4106940|gb|AAD03107.1| (AF114794) NADH
dehydrogenase subunit 2 [Porphyra purpurea]
Length = 495
Score = 86.2 bits (210), Expect = 7e-16
Identities = 93/397 (23%), Positives = 168/397 (41%), Gaps = 66/397 (16%)
Query: 64 VGGYPREIGIEVGLDWVS-----------STFLIAEFLVFGASSLYLV------------ 100
+GG+ +I + +GL W++ + L +FL FG + LV
Sbjct: 47 IGGFATQITV-IGL-WLAFSSNVPHIVSWNALLCHDFLSFGLKNTLLVTALFWILIVFSY 104
Query: 101 ---KRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DRE 152
++V ++ + +L ++ S D+ Y+ +E +++ Y L + + E
Sbjct: 105 NKAEKVNFYEYWIIAMLAIVAMLLISSSFDFLVLYLAIEFQSIAFYILASFKRTSEFSTE 164
Query: 153 AAFKYLLLSMTASYVLILALGMIYFQTGYLNVE---------LASEVGLRDDTPLRLAAI 203
A KY +L +S +L+L + ++Y TG N A++ + + T L + I
Sbjct: 165 AGLKYFVLGAFSSALLLLGISLLYGTTGLTNFGDLSKFFLGISATKASIVNTTILSIVLI 224
Query: 204 --SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGL---ILLSNLGDLSFLK 258
SL+ K P H+W PD + A T V+S GI K + G+ I +++ +
Sbjct: 225 EVSLLFKVSAAPFHMWSPDVYEGAPTNVTSFF-GILPKLALVGIMFRIFFLCCEEIAQML 283
Query: 259 PF-----AILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLST---GNVYGATLYSL 310
F A+ SM G A+ Q KR +AY T+S +G+I+ G ST +GA Y L
Sbjct: 284 NFTLVVCALSSMVVGTFGALEQVKWKRFIAYSTISHVGFIIAGFSTTEFAGAFGAIFYIL 343
Query: 311 AHAMFKGGLF--------LGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGIT 362
+ + +F + +R KD+ L N +L + + + +++G+
Sbjct: 344 IYTLTSLAIFSIVLSLRSISYPTAYQSRYLKDIAGLVKLNPMLSICLVGILFSMAGIPPF 403
Query: 363 IGGVAKSY--LATTEKAIIYAVSFGTAFSFSKLNYYL 397
G AK++ LA +K + S YY+
Sbjct: 404 PGFFAKAFVLLALLQKKLSGLAIVAIILSCISCFYYI 440
>gb|AAF03717.1| (AF182323) NADH dehydrogenase subunit 4 [Drosophila albomicans]
Length = 446
Score = 86.2 bits (210), Expect = 7e-16
Identities = 84/331 (25%), Positives = 149/331 (44%), Gaps = 26/331 (7%)
Query: 33 FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
F P+ + K +++ V + F Y EI +G D +S ++ +
Sbjct: 10 FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69
Query: 93 GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
++ V + N+K L L+ +L+ L+ F S F FY+F E S + + LI
Sbjct: 70 ALMLTASESVNKYNNYKNLFLVNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129
Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
+ +A L ++ S +++ + + + G +N L + D
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLMGIFYLMHKMGTMNFYLMNNFMFNYDLLYFCMMC 189
Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
+ ++K +F +H+WLP AH A S IL+GI +K YG++ + ++ L +K I
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249
Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
+S+ GV+++ + Q + K L+AY +V+ MG L GL T + +G YSL AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309
Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
GLF + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332
>gb|AAF03725.1| (AF182327) NADH dehydrogenase subunit 4 [Drosophila sulfurigaster
bilimbata]
Length = 446
Score = 86.2 bits (210), Expect = 7e-16
Identities = 84/331 (25%), Positives = 149/331 (44%), Gaps = 26/331 (7%)
Query: 33 FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
F P+ + K +++ V + F Y EI +G D +S ++ +
Sbjct: 10 FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69
Query: 93 GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
++ V + N+K L L+ +L+ L+ F S F FY+F E S + + LI
Sbjct: 70 ALMLTASESVNKYNNYKNLFLVNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129
Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
+ +A L ++ S +++ + + + G +N L + D
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMNNFMFNYDLLYFCMMC 189
Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
+ ++K +F +H+WLP AH A S IL+GI +K YG++ + ++ L +K I
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249
Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
+S+ GV+++ + Q + K L+AY +V+ MG L GL T + +G YSL AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309
Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
GLF + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332
>gb|AAF77378.1| (AF200839) NADH dehydrogenase subunit 4 [Drosophila simulans]
>gi|8573549|gb|AAF77389.1| (AF200840) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573564|gb|AAF77403.1| (AF200841) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573578|gb|AAF77416.1| (AF200842) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573592|gb|AAF77429.1| (AF200843) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573606|gb|AAF77442.1| (AF200844) NADH dehydrogenase
subunit 4 [Drosophila simulans]
>gi|8573620|gb|AAF77455.1| (AF200845) NADH dehydrogenase
subunit 4 [Drosophila simulans]
Length = 446
Score = 86.2 bits (210), Expect = 7e-16
Identities = 80/297 (26%), Positives = 137/297 (45%), Gaps = 26/297 (8%)
Query: 67 YPREIGIEVGLDWVSSTFLIAEFLVFGASSLYL--VKRVTNWKELSLL--LLMHSGLIGA 122
Y EI +G D +S ++ + L + + N+K L LL +++ LI
Sbjct: 44 YWSEISYFLGCDMLSYGLILLSLWICSLMLLASESINKYNNYKNLFLLNIVILLLLLILT 103
Query: 123 FISKDYFNFYVFMELSAVSSYALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYF 177
F S F FY+F E S + + LI +R A YLL ++ S +++ + +
Sbjct: 104 FSSMSLFMFYLFFESSLIPTLFLILGWGYQPERLQAGVYLLFYTLLVSLPMLIGIFYVMN 163
Query: 178 QTGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIA 237
+ G +N L + D + ++K +F +H+WLP AH A S IL+GI
Sbjct: 164 KIGSMNFYLMNNFMFNYDLLYFCLLCAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIM 223
Query: 238 VKAPIYGL---ILLSNLGDLSFLKPFAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMG 291
+K YG+ I L +L + + +S+ GV+++++ Q + K L+AY +V+ MG
Sbjct: 224 LKLGGYGMLRVIAFLQLMNLKYSFVWISISLVGGVLVSLVCLRQTDLKALIAYSSVAHMG 283
Query: 292 YILLGLSTGNVYGAT---LYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
+L GL T +G + +AH + GLF + LGSR++L+
Sbjct: 284 IVLSGLLTMTYWGLSGSYTLMIAHGLCSSGLF--------CLANVSYERLGSRSMLI 332
>gi|11465911 NADH dehydrogenase subunit 4 [Chlamydomonas eugametos]
>gi|7432352|pir||T11039 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 4 - Chlamydomonas eugametos
mitochondrion >gi|2865257|gb|AAC39340.1| (AF008237) NADH
dehydrogenase subunit 4 [Chlamydomonas eugametos]
Length = 498
Score = 85.8 bits (209), Expect = 1e-15
Identities = 91/368 (24%), Positives = 153/368 (40%), Gaps = 51/368 (13%)
Query: 39 YEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEF---LVFGAS 95
Y + Y L V + +LL+ L + + + V ++ + +F + L S
Sbjct: 35 YSITKTYCLFVTMVVLLWTLYLWSIYDAIGHSLQMVVIIERLHISFGVDSMSLSLTLLTS 94
Query: 96 SLY--LVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ---D 150
+L+ + + +K LL+ + GA D FY+ E S + + LI +
Sbjct: 95 ALFPICIMVMRTFKGYITFLLLEIVIYGALNVLDLLGFYILFEASLILLFLLIGRSVYGN 154
Query: 151 REAAFKYLLLSMTASYVLILALGMIYFQTG-----YLNVELASE-VGLRDDTPLRLAAIS 204
EAA+K +L +M S +L+ + ++Y Q G YL S+ L+
Sbjct: 155 IEAAYKIVLYTMGGSLILLPIIFVLYAQGGSTSLIYLLCNFGSQHADAYQSAYYLLSERQ 214
Query: 205 LILKAGIF----------PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL 254
+IL G+F P+H+WLP+AH A T S +L+G+ +K L LG +
Sbjct: 215 MILGWGLFIVFAVKIPLMPVHLWLPEAHVAAPTAGSVLLAGVLLK--------LGGLGFI 266
Query: 255 SFLKP---------------FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILL---G 296
F+ P + S + + I Q + K+++AY ++ M I L
Sbjct: 267 RFMIPILPSFTASIFPLVCCMCLASFLYSTLSTIRQIDLKKIVAYSSIGHMAMITLTIFT 326
Query: 297 LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYL-GSRNILLIVSIAILSLA 355
+S + Y AT +AH + LFL VG + D K + Y G L I SI L
Sbjct: 327 MSEYSAYNATFMMIAHGLVSPCLFLLVGLLYDRFHTKLIFYFTGLAAHLPIFSIMFLLCT 386
Query: 356 ISGLGITI 363
++ L +
Sbjct: 387 LANLSFPL 394
>gb|AAF77260.1| (AF200830) NADH dehydrogenase subunit 4 [Drosophila mauritiana]
Length = 446
Score = 85.8 bits (209), Expect = 1e-15
Identities = 80/297 (26%), Positives = 137/297 (45%), Gaps = 26/297 (8%)
Query: 67 YPREIGIEVGLDWVSSTFLIAEFLVFGASSLYL--VKRVTNWKELSLL--LLMHSGLIGA 122
Y EI +G D +S ++ + L + + N+K L LL +++ LI
Sbjct: 44 YWSEISYFLGCDMLSYGLILLSLWICSLMLLASESINKYNNYKNLFLLNIVILLLLLILT 103
Query: 123 FISKDYFNFYVFMELSAVSSYALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYF 177
F S F FY+F E S + + LI +R A YLL ++ S +++ + +
Sbjct: 104 FSSMSLFMFYLFFESSLIPTLFLILGWGYQPERLQAGVYLLFYTLLVSLPMLIGIFYVMN 163
Query: 178 QTGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIA 237
+ G +N L + D + ++K +F +H+WLP AH A S IL+GI
Sbjct: 164 KIGSMNFYLMNNFMFNYDLLYFCLLCAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIM 223
Query: 238 VKAPIYGL---ILLSNLGDLSFLKPFAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMG 291
+K YG+ I L +L + + +S+ GV+++++ Q + K L+AY +V+ MG
Sbjct: 224 LKLGGYGMLRVIAFLQLMNLKYSFVWISISLVGGVLVSLVCLRQTDLKALIAYSSVAHMG 283
Query: 292 YILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
+L GL T + G+ +AH + GLF + LGSR++L+
Sbjct: 284 IVLSGLLTMTYWGLCGSYTLMIAHGLCSSGLF--------CLANVSYERLGSRSMLI 332
>emb|CAB59322.1| (AJ236300) NADH dehydrogenase subunit F [Morinda citrifolia]
Length = 738
Score = 85.4 bits (208), Expect = 1e-15
Identities = 85/328 (25%), Positives = 145/328 (43%), Gaps = 46/328 (14%)
Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILA 171
+ ++G S + Y+F EL V SY LI A K + + + L+L
Sbjct: 133 TSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLG 192
Query: 172 LGMIYFQTGYLNV----ELASEVGLRDDTPLRLAAISLIL-------KAGIFPLHVWLPD 220
+ ++ TG E+ + + L ++ + +L K+ FPLHVWLPD
Sbjct: 193 ILGFFWITGSFEFRDLFEIVNNLILNNEVNCLFVTLCAVLLFAGAVAKSAQFPLHVWLPD 252
Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGVIMA 272
A T +S+++ + A G+ L++ L L + P+ I+++ G +A
Sbjct: 253 A-MEGPTPISALIHAATMVA--XGIFLVARLLPLFIVIPYIMNCISLVGIITVLLGATLA 309
Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA--- 329
+ Q + KR LAY T+SQ+GY++L L G+ A + + HA K L G G+II +
Sbjct: 310 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLXXGSGSIIHSMET 369
Query: 330 ------RKRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGG--------VAKSYLATT 374
K +++ +G R + I I L +S GI + S+L +T
Sbjct: 370 VVGYSPHKSQNMALMGGLRKHVPITKITFLVGTLSICGIPPXXCFWSKDEILTDSWLYST 429
Query: 375 EKAIIYAVSFG-TAFSFSKLNYYLWKGY 401
AII + G TAF ++ ++G+
Sbjct: 430 IFAIIAWFTAGLTAFYMFRIYLLTFEGH 457
>gb|AAF03739.1| (AF182334) NADH dehydrogenase subunit 4 [Drosophila pallidifrons]
Length = 446
Score = 85.4 bits (208), Expect = 1e-15
Identities = 86/331 (25%), Positives = 149/331 (44%), Gaps = 26/331 (7%)
Query: 33 FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
F P+ + K +++ V + F Y EI +G D +S ++ +
Sbjct: 10 FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69
Query: 93 GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
++ V + N+K L LL +L+ L+ F S F FY+F E S + + LI
Sbjct: 70 ALMLTASESVNKYNNYKNLFLLNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129
Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
+ +A L ++ S +++ + + + G +N L D
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMYNFMFNYDLLYFCMMC 189
Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI-LLSNLGDLSFLKPFAI 262
+ ++K +F +H+WLP AH A S IL+GI +K YG++ ++S L L+ F
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQVLNMKYSFIW 249
Query: 263 LSMAF--GVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
+S++ GV+++ + Q + K L+AY +V+ MG L GL T + +G YSL AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309
Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
GLF + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332
>gb|AAF25173.1|AF182345_1 (AF182345) NADH dehydrogenase [Puelia olyriformis]
Length = 705
Score = 85.4 bits (208), Expect = 1e-15
Identities = 82/319 (25%), Positives = 137/319 (42%), Gaps = 39/319 (12%)
Query: 119 LIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLILALG 173
++G S + Y F EL + SY LI A K + + + L+L +
Sbjct: 127 MLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGIL 186
Query: 174 MIYFQTGYLNVELASEVG-----------LRDDTPLRLAAISLILKAGIFPLHVWLPDAH 222
++ TG L ++ L L + + K+ FPLHVWLPDA
Sbjct: 187 GFFWITGSLEFRDLFKIANNWIPNNGINSLFTTLCAFLLFLGAVAKSAQFPLHVWLPDA- 245
Query: 223 SNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI--------LSMAFGVIMAIL 274
T +S+++ + A G+ LL+ L L PF + +++ G +A+
Sbjct: 246 MEGPTPISALIHAATMVAA--GIFLLARLLPLFISLPFIMSFISLVGTITLFLGATLALA 303
Query: 275 QFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDAR---- 330
Q + KR LAY T+SQ+GY++L L G+ A + + HA K LFLG G++I +
Sbjct: 304 QRDIKRSLAYSTMSQLGYMMLALGIGSYQAALFHLITHAYSKALLFLGSGSVIHSMEPLV 363
Query: 331 -----KRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYAVSF 384
K +++ ++G R + I L +S GI S + +Y+ F
Sbjct: 364 GYSPDKSQNMVFMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSKDEILSNSRLYSPFF 423
Query: 385 GTAFSFSK--LNYYLWKGY 401
G SF+ +Y+++ Y
Sbjct: 424 GIIASFTAGLTAFYMFRVY 442
>pir||C83514 probable NADH dehydrogenase PA1054 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946968|gb|AAG04443.1|AE004537_8 (AE004537) probable
NADH dehydrogenase [Pseudomonas aeruginosa]
Length = 933
Score = 85.4 bits (208), Expect = 1e-15
Identities = 123/446 (27%), Positives = 189/446 (41%), Gaps = 88/446 (19%)
Query: 70 EIGIEVGLDWVSSTFLIAEFLVFGASSL-------YLVKRVTNWKELSLLLLMHSGLIGA 122
EIGI + L FL A L+ G L YL ++ + + LLL ++G
Sbjct: 65 EIGINLSLRLDGLGFLFA-LLILGIGLLVILYARYYLSEQEPMGRFFAFLLLFMGSMLGV 123
Query: 123 FISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVL---ILALGM 174
++++ +F EL+++SS+ LI S R+ A L ++ L +L LG
Sbjct: 124 VLAENLLLMMLFWELTSLSSFLLIGFWGSRSDARKGARMALTVTGGGGLALLAGVLLLGH 183
Query: 175 IYFQTGYLNVELASEVGLRDDTPLRLAAISLIL----KAGIFPLHVWLPDAHSNAKTYVS 230
I V A E+ +R L I ++L K+ FP H WLP A + A T VS
Sbjct: 184 IAGSFELTEVLAAGEL-IRAHALYPLVLILILLGVFTKSAQFPFHFWLPHAMA-APTPVS 241
Query: 231 SIL-SGIAVKAPIYGLILLSNLGD--------LSFLKPFAILSMAFGVIMAILQFNAKRL 281
+ L S VKA G+ LL+ L + ++++ G MA+ Q + K L
Sbjct: 242 AYLHSATMVKA---GVFLLARLYPALAGTEWFFYLVSLSGLVTLLLGAGMALFQHDLKGL 298
Query: 282 LAYHTVSQMGYI--LLGLST--GNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDL-- 335
LAY T+S +G I L GL + NV A + + HA FK LF+ G I +D+
Sbjct: 299 LAYSTISHLGLITLLFGLDSPLSNV-AAVFHIINHATFKASLFMAAGIIDHETGSRDMRL 357
Query: 336 -----KYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL------------------A 372
KYL +L IV+ SLA++G+ + G ++K A
Sbjct: 358 INGMWKYLPHTAVLAIVA----SLAMAGVPLLNGFLSKEMFFGETLSQNLLGSFNWLVPA 413
Query: 373 TTEKAIIYAVSFGTAF----SFSKLNYYLWKGYGNEPTNFSILPSLTLGVLTVLVGI--- 425
A +++V++ F F+ L K +EP + +P L L +LVG+
Sbjct: 414 VATLAGVFSVAYSLRFIHDVFFNGEPARLPKFPPHEPPRYMKVPVEILVFLCLLVGMLPA 473
Query: 426 -------------ELGGKLSKYDLLI 438
LGG+L +Y L I
Sbjct: 474 YTVAPLLAAAASASLGGQLPEYSLAI 499
>gb|AAG19147.1| (AE005012) NADH dehydrogenase/oxidoreductase; NdhG3 [Halobacterium
sp. NRC-1]
Length = 403
Score = 85.4 bits (208), Expect = 1e-15
Identities = 91/362 (25%), Positives = 159/362 (43%), Gaps = 48/362 (13%)
Query: 110 SLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA--SQDR---EAAFKYLLLSMTA 164
+L LL +G+ + ++ +EL+++ SY L++ +DR EA KY L+ +
Sbjct: 18 ALTLLAATGMTLMAAANSLVTVFISLELASLPSYVLVSYLKRDRGSIEAGLKYFLIGALS 77
Query: 165 SYVLILALGMIYFQTGYLNVELASEV---GLRDDTPLRLAAISLI----LKAGIFPLHVW 217
S V++ + ++Y TG + + ++ G L L + L+ K P H W
Sbjct: 78 SGVMLYGISLVYAATGVMGLPAIADTITAGTDFVGVLGLGIVMLVAGFAFKTASVPFHFW 137
Query: 218 LPDAHSNAKTYVSSILS------GIAVKAPIYGL-----ILLSNLGDLSFL-KPFAILSM 265
P+A+ A VS+ +S G AV ++ ++ + D S L A+++M
Sbjct: 138 APEAYEGAPAPVSAFISSASKAAGFAVLFRVFTTAFPLDVIAGTVIDWSLLFAALAVVTM 197
Query: 266 AFGVIMAILQFNAKRLLAYHTVSQMGYILLGLS---------TGNVYGAT-LYSLAHAMF 315
G A Q N KR+LAY +V GY+L+GL+ V GA+ ++ L +
Sbjct: 198 TLGNFAAATQENVKRMLAYSSVGHAGYVLIGLAALQSGGGAQNSLVLGASMMHLLVYGFM 257
Query: 316 KGGLFLGVGAIID----ARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL 371
G FL V A+ + R +D L R + V++ + +++GL + G ++K L
Sbjct: 258 NTGAFLFV-ALAEYWDVGRTFEDYNGLSKRAPVACVAMTVFMFSLAGLPVGAGFLSKYVL 316
Query: 372 ATTEKAIIYAVSFGTA--------FSFSKLNYYLWKGYGNEPTNFSILPS-LTLGVLTVL 422
+A G A F +S++ LW + + S P+ L + VL
Sbjct: 317 FAGAVQSGFAWLAGIAAINSALSLFYYSRVVKALWIEDPRDDLSLSGQPTGLYVAVLAAA 376
Query: 423 VG 424
VG
Sbjct: 377 VG 378
>pir||T14242 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 -
dermatophytic fungus (Trichophyton rubrum) mitochondrion
>gi|3947740|emb|CAA77186.1| (Y18476) NADH dehydrogenase
subunit 2 [Trichophyton rubrum]
Length = 563
Score = 85.0 bits (207), Expect = 2e-15
Identities = 97/420 (23%), Positives = 171/420 (40%), Gaps = 78/420 (18%)
Query: 47 LGVFLPMLLFPLSRG--GVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVT 104
L + ML+F L+ + G YPR+ W + +L L+F L+ V +
Sbjct: 65 LDLIFDMLIFMLTMFILNLTGFYPRKY-------WTNK-YLSINMLLFNKLKLF-VSNIF 115
Query: 105 NWK-------ELSLLLL-MHSGLIGAFISKDYFNFYVFMELSAVSSYALI-----ASQDR 151
N K E +L+LL + G + S D + Y+ +EL + Y L +
Sbjct: 116 NKKGEQYTIIEYTLILLFIVMGSLLLISSSDLISVYLSIELQSYGLYILCTLYRNSESST 175
Query: 152 EAAFKYLLLSMTASYVLILALGMIYFQTGY--------------------LNVELASEVG 191
+ Y LL +S ++L +G+IY +G LN + +++
Sbjct: 176 SSGLTYFLLGGLSSCFILLGIGLIYANSGTTYLDSFYIITNLSNLINDNNLNYIMYNDIS 235
Query: 192 LRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSS---ILSGIAVKAPIYGLILL 248
L L + + K P H W PD + T V++ I+ I++ + L+
Sbjct: 236 TYISYYLLLITVGFLFKISAAPFHFWSPDVYDGIPTIVTTFVAIIPKISILIILLHLVHF 295
Query: 249 SNLGDLSF----LKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNV-- 302
SN + + L +ILS+ G ++ + QF KRL AY T+S +G++LL LS +V
Sbjct: 296 SNNISIEYSWTELPISSILSLIIGTVLGLTQFRIKRLFAYSTISHVGFLLLALSINSVES 355
Query: 303 -YGATLYSLAHAMFKGGLF---LGVGAIIDARKRKDLKYLGSR----------------- 341
Y + +++ +F +G+G + K++ Y
Sbjct: 356 IQSFIFYLIQYSISNLNVFFILIGIGYTLYFYINKNIDYNNLLDKNNSPIQLINQLKGYF 415
Query: 342 --NILLIVSIAILSLAISGLGITIGGVAKSYLATT--EKAIIYAVSFGTAFSFSKLNYYL 397
N +L +S+AI L+ +G+ +G AK + ++ + I+ G S YYL
Sbjct: 416 YINPILSISLAITLLSFAGIPPLVGFFAKLMVLSSALQNGFIFLALIGILTSVVSAVYYL 475
>gb|AAF03731.1| (AF182330) NADH dehydrogenase subunit 4 [Drosophila kepulauana]
>gi|6103697|gb|AAF03733.1| (AF182331) NADH dehydrogenase
subunit 4 [Drosophila kohkoa]
Length = 446
Score = 85.0 bits (207), Expect = 2e-15
Identities = 83/331 (25%), Positives = 149/331 (44%), Gaps = 26/331 (7%)
Query: 33 FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
F P+ + K +++ V + F Y EI +G D +S ++ +
Sbjct: 10 FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69
Query: 93 GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
++ V + N+K L L+ +L+ L+ F S F FY+F E S + + LI
Sbjct: 70 ALMLTASESVNKYNNYKNLFLVNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129
Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
+ +A L ++ S +++ + + + G +N L + D
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMNNFMFNYDLLYFCMMC 189
Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
+ ++K +F +H+WLP AH A S IL+G+ +K YG++ + ++ L +K I
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGMMLKLGGYGMLRVISILQLLNMKYSFIW 249
Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
+S+ GV+++ + Q + K L+AY +V+ MG L GL T + +G YSL AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309
Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
GLF + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332
>gb|AAF90048.1| (AF238062) NADH dehydrogenase subunit F [Schisandra chinensis]
Length = 431
Score = 85.0 bits (207), Expect = 2e-15
Identities = 81/325 (24%), Positives = 142/325 (42%), Gaps = 39/325 (12%)
Query: 39 YEVKALYLLGVFLPMLLFPLSRGGVVGGY------PREIGIEVG--LDWVSSTFLI---- 86
+ V L ++ +F L +GG + Y + +E+G +D ++S LI
Sbjct: 35 FSVSLLSIVMIFSADLSIQQIKGGFIYQYLWSWTINSDFSLELGCLIDPLTSIMLILITT 94
Query: 87 AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALI 146
+V S Y+ + + + ++ ++G S + Y+F EL + SY LI
Sbjct: 95 VGIVVLIYSDNYMSHDQGYLRFFASMSFSNTSMLGLVTSSNLIQIYIFWELVGMCSYLLI 154
Query: 147 ASQ-----DREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVE--------LASEVGLR 193
A K + + + L+L + +Y+ TG L G+
Sbjct: 155 GFWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGSFEFRDLFKIFNNLIHNNGVN 214
Query: 194 DDTPLRLAAI---SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSN 250
A++ + K+ FPLH+WLPDA T +S+++ + A G+ L++
Sbjct: 215 SVFATFCASLLFLGAVAKSAQFPLHIWLPDA-MEGPTPISALIHAATMVAA--GVFLVAR 271
Query: 251 LGDLSFLKPF--------AILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNV 302
L L + P+ ++++ G A+ Q + KR LAY T+SQ+GYI+L G+
Sbjct: 272 LLPLFTVIPYIMNLISLIGVITVLLGATFALAQRDIKRSLAYSTMSQLGYIMLAPGIGSY 331
Query: 303 YGATLYSLAHAMFKGGLFLGVGAII 327
A+ + + HA K LFLG G+II
Sbjct: 332 RAASFHLITHAYSKALLFLGSGSII 356
>gi|5835242 NADH dehydrogenase subunit 4 [Drosophila melanogaster]
>gi|1166538|gb|AAC47819.1| (U37541) NADH dehydrogenase
subunit 4 [Drosophila melanogaster]
Length = 446
Score = 84.7 bits (206), Expect = 2e-15
Identities = 79/297 (26%), Positives = 139/297 (46%), Gaps = 26/297 (8%)
Query: 67 YPREIGIEVGLDWVSSTFLIAEFLVFGASSLY--LVKRVTNWKELSLL--LLMHSGLIGA 122
Y EI +G D +S ++ + L ++ + N+K L LL +++ LI
Sbjct: 44 YWSEISYFLGCDMLSYGLILLSLWICSLMLLASEMINKHNNYKNLFLLNIIILLLLLILT 103
Query: 123 FISKDYFNFYVFMELSAVSSYALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYF 177
F S F FY+F E S + + LI +R A YLL ++ S +++ + +
Sbjct: 104 FSSMSLFMFYLFFESSLIPTLFLILGWGYQPERLQAGLYLLFYTLLVSLPMLIGIFYVMN 163
Query: 178 QTGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIA 237
+ G +N L + D + ++K +F +++WLP AH A S IL+GI
Sbjct: 164 KIGSMNFYLMNNFMFNYDLLYFCLLCAFLVKMPMFLVYLWLPKAHVEAPVSGSMILAGIM 223
Query: 238 VKAPIYGLILLSNLGDLSFLK---PFAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMG 291
+K YG++ + + L LK + +S+ GV+++++ Q + K L+AY +V+ MG
Sbjct: 224 LKLGGYGMLRVISFLQLMNLKYSFVWISISLVGGVLVSLVCLRQTDLKALIAYSSVAHMG 283
Query: 292 YILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
+L GL T + G+ +AH + GLF + LGSR++L+
Sbjct: 284 IVLSGLLTMTYWGLCGSYTLMIAHGLCSSGLF--------CLANVSYERLGSRSMLI 332
>pir||T12677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - chloroplast
Avena sativa (fragment) >gi|726164|gb|AAA64204.1|
(U22000) NADH dehydrogenase F [Avena sativa]
Length = 702
Score = 84.3 bits (205), Expect = 3e-15
Identities = 83/322 (25%), Positives = 138/322 (42%), Gaps = 39/322 (12%)
Query: 116 HSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLIL 170
++ ++G S + Y F EL + SY LI A K + + + L+L
Sbjct: 124 NTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLL 183
Query: 171 ALGMIYFQTGYLNVELASEVG-----------LRDDTPLRLAAISLILKAGIFPLHVWLP 219
+ ++ TG L ++ L L + + K+ FPLHVWLP
Sbjct: 184 GILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLP 243
Query: 220 DAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI--------LSMAFGVIM 271
DA T +S+++ + A G+ LL+ L L P + +++ G +
Sbjct: 244 DA-MEGPTPISALIHAATMVAA--GIFLLARLLPLFISLPLIMSLISLVGTITLFLGATL 300
Query: 272 AILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDAR- 330
A+ Q + KR LAY T+SQ+GY++L L G+ A + + HA K LFLG G+II +
Sbjct: 301 ALAQRDIKRSLAYSTMSQLGYMMLALGIGSYQAALFHLITHAYSKALLFLGSGSIIHSME 360
Query: 331 --------KRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYA 381
K +++ +G R + I A L +S GI S + +Y+
Sbjct: 361 PLVGYSPDKSQNMVLMGGLRKYIPITRSAFLWGTLSLCGIPPLACFWSKDEILSNSWLYS 420
Query: 382 VSFGTAFSFSK--LNYYLWKGY 401
FG SF+ +Y+++ Y
Sbjct: 421 PFFGIIASFTAGLTAFYMFRIY 442
>sp|O53307|NUOM_MYCTU NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
M) >gi|7432363|pir||C70946 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain nuoM - Mycobacterium
tuberculosis (strain H37RV) >gi|3242280|emb|CAA16668.1|
(AL021646) nuoM [Mycobacterium tuberculosis]
Length = 553
Score = 84.3 bits (205), Expect = 3e-15
Identities = 83/325 (25%), Positives = 142/325 (43%), Gaps = 37/325 (11%)
Query: 109 LSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
++L L + S ++ + I+ D FYVF E + Y LI + AA K+LL ++
Sbjct: 144 VALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGGFGQGAGRSRAAVKFLLYNLF 203
Query: 164 ASYVLILALGMIYFQTG--------YLNVELASEVGLRDDTPLRLAAISL------ILKA 209
+++ A+ +Y T + + G P A+ L +KA
Sbjct: 204 GGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGRYGADPAVFKALFLGFMFAFAIKA 263
Query: 210 GIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI--LLSNLGDLS-FLKPF----AI 262
++P H WLPDA + + ++ + K +G++ L D S + +P AI
Sbjct: 264 PLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLRYCLQLFPDPSTYFRPLIVTLAI 323
Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLG---LSTGNVYGATLYSLAHAMFKGGL 319
+ + +G I+AI Q + RL+AY ++S G+I+ G ++T G+TLY L H + +
Sbjct: 324 IGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFVMTTQGQSGSTLYMLNHGLSTAAV 383
Query: 320 FLGVGAIIDAR-KRKDLKYLGSRNILLIVS-----IAILSLAISGLGITIGGVAKSYLAT 373
FL G +I R R Y G + + I++ A+ ++++ GL I L
Sbjct: 384 FLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSAMATVSLPGLAPFISEFL--VLLG 441
Query: 374 TEKAIIYAVSFGTAFSFSKLNYYLW 398
T A +FG Y LW
Sbjct: 442 TFSRYWLAAAFGVTALVLSAVYMLW 466
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.145 0.416
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161004017
Number of Sequences: 2977
Number of extensions: 6608581
Number of successful extensions: 33719
Number of sequences better than 1.0e-10: 1746
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1743
Number of HSP's that attempted gapping in prelim test: 31185
Number of HSP's gapped (non-prelim): 2140
length of query: 479
length of database: 189,106,746
effective HSP length: 55
effective length of query: 424
effective length of database: 156,189,961
effective search space: 66224543464
effective search space used: 66224543464
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 167 (69.5 bits)