BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0806 (PAB0806) DE:NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4
related (EC 1.6.5.3)
         (479 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75102 NADH dehydrogenase (ubiquinone) chain 4 related PAB0...   929  0.0
pir||H71084 hypothetical protein PH0941 - Pyrococcus horikoshii ...   742  0.0
pir||C72295 hypothetical protein TM1105 - Thermotoga maritima (s...   158  1e-37
pir||G75113 NADH dehydrogenase I chain M PAB0490 - Pyrococcus ab...   152  9e-36
pir||F71019 hypothetical protein PH1451 - Pyrococcus horikoshii ...   151  1e-35
pir||B71017 hypothetical protein PH1431 - Pyrococcus horikoshii ...   150  4e-35
pir||F75059 NADH-dehydrogenase related PAB1402 - Pyrococcus abys...   149  6e-35
gb|AAG19080.1| (AE005007) NADH dehydrogenase/oxidoreductase; Ndh...   144  2e-33
gb|AAF21815.1|AF097740_4 (AF097740) multiple resistance and pH r...   139  5e-32
dbj|BAB05035.1| (AP001511) Na+/H+ antiporter [Bacillus halodurans]    139  6e-32
pir||F75115 co-induced hydrogenase related, chain M PAB1888 - Py...   137  3e-31
pir||S75338 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...   130  4e-29
pir||G71019 hypothetical protein PH1452 - Pyrococcus horikoshii ...   129  5e-29
pir||F75113 NADH dehydrogenase I N chain PAB2416 - Pyrococcus ab...   129  9e-29
gi|11467100 nad4 [Marchantia polymorpha] >gi|464242|sp|P26848|NU...   127  2e-28
pir||H82494 probable NADH dehydrogenase VCA0155 [imported] - Vib...   126  6e-28
pir||S74687 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...   124  2e-27
gi|11465635 NADH dehydrogenase subunit 4 [Porphyra purpurea] >gi...   124  2e-27
pir||B70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain...   123  4e-27
gb|AAF03176.1|AF110138_8 (AF110138) NADH dehydrogenase subunit 4...   123  5e-27
gi|8954372 NADH dehydrogenase subunit 4 [Cyanidioschyzon merolae...   123  5e-27
gi|9653250 NADH dehydrogenase subunit 4 [Chondrus crispus] >gi|1...   120  5e-26
gb|AAK41287.1| NADH-Ubiquinone/plastoquinone related [Sulfolobus...   118  1e-25
pir||D64463 conserved hypothetical protein MJ1309 - Methanococcu...   117  2e-25
emb|CAC08260.1| (AL392146) NADH dehydrogenase subunit [Streptomy...   117  3e-25
emb|CAC14150.1| (AJ245399) putative NADH-ubiquinone oxidoreducta...   116  4e-25
pir||H82822 NADH-ubiquinone oxidoreductase, NQO14 subunit XF0318...   115  9e-25
pir||B72281 hypothetical protein TM1212 - Thermotoga maritima (s...   115  1e-24
emb|CAB07908.1| (Z93932) unknown [Bacillus subtilis]                  115  2e-24
gb|AAF65740.1|AF228525_10 (AF228525) F420H2 dehydrogenase subuni...   115  2e-24
gb|AAG19146.1| (AE005012) F420H2:quinone oxidoreductase chain M;...   114  2e-24
pir||G70008 NADH dehydrogenase (ubiquinone) homolog yufD - Bacil...   114  2e-24
pir||G75060 hydrogenase-4 component B (EC 1.-.-.-) PAB1392 - Pyr...   114  2e-24
gi|11466578 NADH dehydrogenase subunit 4 [Rhodomonas salina] >gi...   114  2e-24
sp|Q9ZCG0|NUOM_RICPR NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO...   114  3e-24
emb|CAC14149.1| (AJ245399) putative NADH-ubiquinone oxidoreducta...   113  3e-24
gi|11466666 NADH dehydrogenase subunit 4 [Malawimonas jakobiform...   113  3e-24
pir||S75961 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...   113  5e-24
gi|11466299 NADH dehydrogenase subunit 4 [Cafeteria roenbergensi...   112  8e-24
pir||A48643 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...   111  1e-23
pir||T51314 probable CO-induced hydrogenase complex chain CooM [...   111  1e-23
sp|P31978|NUOM_ECOLI NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO...   111  1e-23
pir||H64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N...   111  2e-23
gi|11497457 NADH dehydrogenase (ubiquinone), subunit 4 [Protothe...   111  2e-23
pir||S75340 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...   111  2e-23
pir||S38322 NADH dehydrogenase I chain nuoM - Escherichia coli (...   110  3e-23
pir||E83514 probable NADH dehydrogenase PA1056 [imported] - Pseu...   110  4e-23
pir||F71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N...   110  4e-23
gi|11466471 NADH dehydrogenase subunit 4 [Chrysodidymus synuroid...   110  4e-23
pir||S16447 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...   109  5e-23
pir||T12297 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...   109  9e-23
pir||G71683 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain...   109  9e-23
gb|AAF65741.1|AF228525_11 (AF228525) F420H2 dehydrogenase subuni...   109  9e-23
gi|11465868 NADH dehydrogenase subunit 4 [Ochromonas danica] >gi...   109  9e-23
dbj|BAA35098.1| (AB015981) MnhD [Staphylococcus aureus]               108  1e-22
sp|Q04050|NU4M_BRACM NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 >gi|...   108  2e-22
emb|CAA69742.3| (Y08501) NADH dehydrogenase subunit 4 [Arabidops...   108  2e-22
gi|11466552 NADH dehydrogenase, subunit 4 [Reclinomonas american...   107  3e-22
pir||E81220 NADH dehydrogenase I, M chain NMB0258 [imported] - N...   106  5e-22
gi|9838467 NADH dehydrogenase subunit 4 [Beta vulgaris] >gi|9087...   106  5e-22
pir||T14236 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...   106  5e-22
pir||E83315 NADH dehydrogenase I chain M PA2648 [imported] - Pse...   106  6e-22
pir||H81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain M...   106  6e-22
gi|11465928 NADH dehydrogenase subunit 4 [Pedinomonas minor] >gi...   106  6e-22
gi|7524971 NADH dehydrogenase subunit 4 [Dictyostelium discoideu...   106  8e-22
pir||T12399 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2...   106  8e-22
sp|P23482|HYFB_ECOLI HYDROGENASE-4 COMPONENT B >gi|7446810|pir||...   105  1e-21
pir||S61395 probable Na+/H+-exchanging protein system component ...   105  1e-21
sp|P57263|NUOM_BUCAI NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO...   105  1e-21
gi|11467925 NADH dehydrogenase subunit 4 [Scenedesmus obliquus] ...   104  2e-21
sp|P27572|NU4M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 >gi|...   104  3e-21
sp|P50974|NUOM_RHOCA NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO...   103  4e-21
gi|11466752 ndh4 [Marchantia polymorpha] >gi|128731|sp|P06263|NU...   103  5e-21
sp|O53308|NUON_MYCTU NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO...   103  5e-21
gi|11466428 subunit 4 of NADH-plastoquinoneoxidoreductase [Mesos...   102  7e-21
gb|AAF21812.1|AF097740_1 (AF097740) multiple resistance and pH r...   102  9e-21
emb|CAB89017.1| (AL353870) putative oxidoreductase. [Streptomyce...   102  9e-21
gi|11466208 NADH dehydrogenase subunit 4 [Naegleria gruberi] >gi...   102  9e-21
gb|AAF13041.1|AF157639_1 (AF157639) putative formate hydrogenlya...   102  1e-20
pir||G81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N...   101  2e-20
gb|AAD52918.1|AF152244_5 (AF152244) NADH dehydrogenase subunit 4...   101  2e-20
pir||S38323 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain...   101  2e-20
pir||S43882 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...   101  2e-20
gi|9695383 NADH dehydrogenase subunit 4 [Phytophthora infestans]...   101  2e-20
pir||S38992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2...   101  3e-20
emb|CAC12088.1| (AL445066) NADH dehydrogenase, chain N related p...   101  3e-20
pir||S08621 probable hydrogenase 3 protein 3 - Escherichia coli ...   100  3e-20
sp|P32421|NU4C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4 >...   100  3e-20
pir||DENTN4 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...   100  3e-20
gi|11467057 NADH dehydrogenase, subunit 4 [Acanthamoeba castella...   100  3e-20
sp|P06262|NU4C_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4, ...   100  3e-20
gi|11466015 NADH dehydrogenase ND4 subunit [Nicotiana tabacum] >...   100  3e-20
pir||F72619 probable NADH dehydrogenase (ubiquinone) chain 13 AP...   100  3e-20
gb|AAK40663.1| NADH dehydrogenase subunit L  (NuoL) [Sulfolobus ...   100  4e-20
gi|11467595 NADH dehydrogenase, subunit 4 [Allomyces macrogynus]...   100  4e-20
emb|CAB51628.2| (AJ245399) putative NADH-ubiquinone oxidoreducta...   100  6e-20
sp|P29925|NQOD_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 13 (NA...    99  8e-20
pir||S65076 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2...    99  8e-20
gb|AAA69233.1| (U29579) formate hydrogenlyase subunit 3 [Escheri...    99  1e-19
gi|7525085 NADH dehydrogenase ND4 [Arabidopsis thaliana] >gi|668...    99  1e-19
emb|CAB64689.1| (AJ235829) NADH dehydrogenase, putative [Anthocl...    99  1e-19
emb|CAB65368.1| (AJ235831) NADH dehydrogenase, putative [Potalia...    99  1e-19
gi|11466847 NADH dehydrogenase ND4 [Oryza sativa] >gi|128732|sp|...    99  1e-19
sp|P16429|HYCC_ECOLI FORMATE HYDROGENLYASE SUBUNIT 3 (FHL SUBUNI...    99  1e-19
sp|P93401|NU2M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2            99  1e-19
sp|O03060|NU4C_HORVU NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4, ...    98  2e-19
sp|Q9ZD13|NUON_RICPR NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO...    98  2e-19
emb|CAA09817.1| (AJ011848) ndhD gene product [Hordeum vulgare]         98  2e-19
gb|AAG23678.1|AF288091_23 (AF288091) NADH dehydrogenase subunit ...    98  2e-19
pir||A70010 NADH dehydrogenase homolog yufT - Bacillus subtilis ...    98  2e-19
gb|AAF03177.1|AF110138_9 (AF110138) NADH dehydrogenase subunit 2...    98  2e-19
emb|CAB65021.1| (AJ235830) NADH dehydrogenase, putative [Fagraea...    98  2e-19
gi|11467101 nad2 [Marchantia polymorpha] >gi|462764|sp|P26846|NU...    98  3e-19
emb|CAB94828.1| (AJ236250) NADH dehydrogenase subunit F [Anthocl...    98  3e-19
sp|P77437|HYFF_ECOLI HYDROGENASE-4 COMPONENT F >gi|7466379|pir||...    97  4e-19
gi|11466676 ndh2 [Marchantia polymorpha] >gi|128656|sp|P06257|NU...    97  5e-19
gb|AAA84290.1| (L36400) NADH dehydrogenase subunit [Gentiana pro...    97  5e-19
sp|P33608|NUON_ECOLI NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO...    97  5e-19
emb|CAB59333.1| (AJ236309) NADH dehydrogenase subunit F [Spermac...    97  5e-19
gb|AAF03771.1| (AF147712) NADH dehydrogenase subunit [Hydrostach...    97  5e-19
pir||A75390 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    97  5e-19
gb|AAF65739.1|AF228525_9 (AF228525) F420H2 dehydrogenase subunit...    97  5e-19
gi|6137793 NADH dehydrogenase subunit 4 [Metridium senile] >gi|3...    96  7e-19
gi|9695386 NADH dehydrogenase subunit 2 [Phytophthora infestans]...    96  7e-19
pir||E81251 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain...    96  7e-19
pir||F81220 NADH dehydrogenase I, N chain NMB0259 [imported] - N...    96  7e-19
gb|AAF78606.1|AF260826_5 (AF260826) NADH subunit 4 [Cochliomyia ...    96  7e-19
pir||T14239 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...    96  7e-19
gb|AAK40664.1| NADH dehydrogenase subunit N  (NuoN) [Sulfolobus ...    96  9e-19
gi|11467090 NADH dehydrogenase subunit 4 [Chlamydomonas reinhard...    96  9e-19
pir||T06260 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2...    96  9e-19
gi|11467867 subunit 4 of NADH-plastoquinoneoxidoreductase [Nephr...    96  9e-19
gi|11466400 subunit 2 of NADH-plastoquinoneoxidoreductase [Mesos...    96  9e-19
gb|AAG19079.1| (AE005006) Vng0562c [Halobacterium sp. NRC-1]           96  9e-19
pir||T13881 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...    96  1e-18
gi|11497581 NADH dehydrogenase ND4 subunit [Spinacia oleracea] >...    96  1e-18
pir||G82822 NADH-ubiquinone oxidoreductase, NQO13 subunit XF0317...    96  1e-18
gi|5835927 NADH dehydrogenase subunit 4 [Anopheles quadrimaculat...    95  1e-18
emb|CAA05498.1| (AJ002490) ndhB [Arabidopsis thaliana]                 95  1e-18
dbj|BAA35095.1| (AB015981) MnhA [Staphylococcus aureus]                95  1e-18
gi|7525078 NADH dehydrogenase ND2 [Arabidopsis thaliana] >gi|752...    95  1e-18
gb|AAA93548.2| (L04272) NADH dehydrogenase subunit 4 [Anopheles ...    95  1e-18
pir||S77331 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...    95  2e-18
pir||F75464 probable NADH-ubiquinone/plastoquinone subunit - Dei...    95  2e-18
pir||G75389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2...    95  2e-18
emb|CAB67220.1| (AJ271079) NADH-plastoquinone oxidoreductase sub...    95  2e-18
pir||S37071 NADH dehydrogenase I chain nuoN - Escherichia coli >...    94  3e-18
gi|11467244 NADH dehydrogenase ND2 [Zea mays] >gi|11467270|ref|N...    94  3e-18
pir||S51503 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...    94  3e-18
gi|11466553 NADH dehydrogenase, subunit 2 [Reclinomonas american...    94  3e-18
gi|11499413 F420H2:quinone oxidoreductase, 53.9 kDa subunit (nuo...    94  3e-18
pir||D70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain...    94  3e-18
pir||C70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain...    94  3e-18
pir||T12170 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    94  4e-18
pir||T12171 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    94  4e-18
pir||T12172 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    94  4e-18
pir||T12173 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    94  4e-18
pir||H75389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...    93  6e-18
gi|5834920 NADH dehydrogenase subunit 4 [Anopheles gambiae] >gi|...    93  8e-18
pir||T12401 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...    93  8e-18
gb|AAD28444.1|AF126026_1 (AF126026) NADH dehydrogenase subunit 2...    93  8e-18
gb|AAG12229.1| (AF163463) NADH dehydrogenase subunit F [Schoenox...    93  8e-18
gi|11467594 NADH dehydrogenase, subunit 2 [Allomyces macrogynus]...    92  1e-17
gb|AAG19078.1| (AE005006) Vng0560c [Halobacterium sp. NRC-1]           92  1e-17
gi|5834838 NADH dehydrogenase subunit 4 [Drosophila yakuba] >gi|...    92  1e-17
sp|Q10880|Y051_MYCTU HYPOTHETICAL 65.6 KD PROTEIN RV0083 >gi|744...    92  1e-17
gi|11466835 NADH dehydrogenase ND2 [Oryza sativa] >gi|11466862|r...    92  2e-17
emb|CAB59307.1| (AJ236287) NADH dehydrogenase subunit F [Carphal...    92  2e-17
emb|CAC12089.1| (AL445066) NADH dehydrogenase, chain M related p...    91  2e-17
sp|Q55429|NU5C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >...    91  3e-17
pir||S65075 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2...    91  3e-17
gi|9653248 NADH dehydrogenase subunit 2 [Chondrus crispus] >gi|1...    91  3e-17
sp|P72714|NU2C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 2 >...    91  3e-17
pir||A39366 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2...    90  4e-17
pir||T34612 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...    90  4e-17
emb|CAB89015.1| (AL353870) probable NADH dehydrogenase I complex...    90  4e-17
emb|CAC12090.1| (AL445066) NADH dehydrogenase, chain L related p...    90  4e-17
gi|5835047 NADH dehydrogenase subunit 4 [Didelphis virginiana] >...    90  5e-17
emb|CAA63737.1| (X93358) phaD [Sinorhizobium meliloti]                 90  5e-17
emb|CAB59310.1| (AJ236293) NADH dehydrogenase subunit F [Danais ...    90  5e-17
gb|AAF27244.1|AF111766_1 (AF111766) NADH dehydrogenase [Sparrman...    90  5e-17
gi|11466469 NADH dehydrogenase subunit 5 [Chrysodidymus synuroid...    90  5e-17
gb|AAF82680.1| (AF188856) NADH dehydrogenase subunit B [Nymphaea...    90  5e-17
pir||F83315 NADH dehydrogenase I chain N PA2649 [imported] - Pse...    90  5e-17
gb|AAG12221.1| (AF163455) NADH dehydrogenase subunit F [Carex de...    90  5e-17
pir||S47879 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...    90  5e-17
gb|AAG12227.1| (AF163461) NADH dehydrogenase subunit F [Kobresia...    90  5e-17
gb|AAG26093.1| (AF123771) NADH dehydrogenase subunit B [Acorus c...    90  5e-17
gb|AAG26132.1| (AF123784) NADH dehydrogenase subunit B [Trochode...    90  5e-17
emb|CAB65486.1| (AJ235842) NADH dehydrogenase, putative [Usteria...    90  7e-17
gb|AAF27247.1|AF111769_1 (AF111769) NADH dehydrogenase [Grewia b...    90  7e-17
gb|AAG26111.1| (AF123777) NADH dehydrogenase subunit B [Dioscore...    90  7e-17
pir||C70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain...    89  9e-17
gb|AAF03715.1| (AF182322) NADH dehydrogenase subunit 4 [Drosophi...    89  9e-17
emb|CAB67207.1| (AJ271079) NADH-plastoquinone oxidoreductase sub...    89  9e-17
sp|P56911|NUN2_RHIME NADH DEHYDROGENASE I CHAIN N 2 (NADH-UBIQUI...    89  9e-17
gb|AAF73308.1| (AF188850) NADH dehydrogenase subunit B [Zamia fu...    89  9e-17
gb|AAF77285.1| (AF200832) NADH dehydrogenase subunit 4 [Drosophi...    89  9e-17
gi|11466667 NADH dehydrogenase subunit 2 [Malawimonas jakobiform...    89  9e-17
gb|AAG26099.1| (AF123773) NADH dehydrogenase subunit B [Cabomba ...    89  9e-17
gb|AAD52735.1|AF123677_1 (AF123677) NADH dehydrogenase [Bacopa c...    89  1e-16
emb|CAB59327.1| (AJ236304) NADH dehydrogenase subunit F [Pentas ...    89  1e-16
gb|AAF03711.1| (AF182320) NADH dehydrogenase subunit 4 [Drosophi...    89  1e-16
gb|AAG26108.1| (AF123776) NADH dehydrogenase subunit B [Cercidip...    89  1e-16
gb|AAG26117.1| (AF123779) NADH dehydrogenase subunit B [Ginkgo b...    89  1e-16
gb|AAG26123.1| (AF123781) NADH dehydrogenase subunit B [Lactoris...    89  1e-16
sp|P31971|NU5C_SYNP2 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >...    89  1e-16
pir||T12400 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    89  1e-16
pir||T13665 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    88  2e-16
gb|AAF03741.1| (AF182335) NADH dehydrogenase subunit 4 [Drosophi...    88  2e-16
gb|AAF03747.1| (AF182338) NADH dehydrogenase subunit 4 [Drosophi...    88  2e-16
gb|AAF77299.1| (AF200833) NADH dehydrogenase subunit 4 [Drosophi...    88  2e-16
gb|AAG26096.1| (AF123772) NADH dehydrogenase subunit B [Asarum c...    88  2e-16
gb|AAA84181.1| (L36397) NADH dehydrogenase subunit [Catalpa sp. ...    88  3e-16
gb|AAF03729.1| (AF182329) NADH dehydrogenase subunit 4 [Drosophi...    88  3e-16
gb|AAF03737.1| (AF182333) NADH dehydrogenase subunit 4 [Drosophi...    88  3e-16
pir||B82495 probable NADH dehydrogenase VCA0157 [imported] - Vib...    88  3e-16
gb|AAG26129.1| (AF123783) NADH dehydrogenase subunit B [Saururus...    88  3e-16
pir||S26025 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    87  3e-16
gi|5834883 NADH dehydrogenase subunit 5 [Ascaris suum] >gi|11718...    87  3e-16
gb|AAA64192.1| (U21988) NADH dehydrogenase F [Danthoniopsis peti...    87  3e-16
gi|11466005 NADH dehydrogenase ND2 subunit [Nicotiana tabacum] >...    87  3e-16
pir||T14229 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    87  3e-16
gb|AAF03713.1| (AF182321) NADH dehydrogenase subunit 4 [Drosophi...    87  3e-16
gb|AAF03721.1| (AF182325) NADH dehydrogenase subunit 4 [Drosophi...    87  3e-16
pir||S01187 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4...    87  4e-16
gi|11497569 NADH dehydrogenase ND2 subunit [Spinacia oleracea] >...    87  4e-16
gi|11465866 NADH dehydrogenase subunit 5 [Ochromonas danica] >gi...    87  4e-16
pir||T13409 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    87  6e-16
gb|AAF03723.1| (AF182326) NADH dehydrogenase subunit 4 [Drosophi...    87  6e-16
gb|AAF77272.1| (AF200831) NADH dehydrogenase subunit 4 [Drosophi...    87  6e-16
emb|CAC14148.1| (AJ245399) putative NADH-ubiquinone oxidoreducta...    87  6e-16
sp|Q56229|NQOE_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 14 (NA...    86  7e-16
gi|11465633 NADH dehydrogenase subunit 2 [Porphyra purpurea] >gi...    86  7e-16
gb|AAF03717.1| (AF182323) NADH dehydrogenase subunit 4 [Drosophi...    86  7e-16
gb|AAF03725.1| (AF182327) NADH dehydrogenase subunit 4 [Drosophi...    86  7e-16
gb|AAF77378.1| (AF200839) NADH dehydrogenase subunit 4 [Drosophi...    86  7e-16
gi|11465911 NADH dehydrogenase subunit 4 [Chlamydomonas eugameto...    86  1e-15
gb|AAF77260.1| (AF200830) NADH dehydrogenase subunit 4 [Drosophi...    86  1e-15
emb|CAB59322.1| (AJ236300) NADH dehydrogenase subunit F [Morinda...    85  1e-15
gb|AAF03739.1| (AF182334) NADH dehydrogenase subunit 4 [Drosophi...    85  1e-15
gb|AAF25173.1|AF182345_1 (AF182345) NADH dehydrogenase [Puelia o...    85  1e-15
pir||C83514 probable NADH dehydrogenase PA1054 [imported] - Pseu...    85  1e-15
gb|AAG19147.1| (AE005012) NADH dehydrogenase/oxidoreductase; Ndh...    85  1e-15
pir||T14242 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2...    85  2e-15
gb|AAF03731.1| (AF182330) NADH dehydrogenase subunit 4 [Drosophi...    85  2e-15
gb|AAF90048.1| (AF238062) NADH dehydrogenase subunit F [Schisand...    85  2e-15
gi|5835242 NADH dehydrogenase subunit 4 [Drosophila melanogaster...    85  2e-15
pir||T12677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    84  3e-15
sp|O53307|NUOM_MYCTU NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO...    84  3e-15
gb|AAA69711.1| (M37275) NADH dehydrogenase 4 [Drosophila melanog...    84  4e-15
pir||G64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    83  5e-15
gi|11466061 NADH dehydrogenase subunit 4 [Pichia canadensis] >gi...    83  5e-15
gi|5835255 NADH dehydrogenase subunit 4 [Locusta migratoria] >gi...    83  6e-15
pir||T03467 NADH dehydrogenase (ubiquinone) chain 5 homolog - Rh...    83  8e-15
gi|5834894 NADH dehydrogenase subunit 5 [Caenorhabditis elegans]...    83  8e-15
emb|CAA23995.1| (V00650) URF 4 [Emericella nidulans]                   83  8e-15
sp|P03913|NU4M_ASPAM NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 >gi|...    83  8e-15
sp|P18931|NU4M_DROME NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4            83  8e-15
pir||T12625 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    82  1e-14
gi|5835688 NADH dehydrogenase subunit 5 [Ixodes hexagonus] >gi|7...    82  1e-14
gb|AAF63428.1|AF150756_10 (AF150756) NADH dehydrogenase subunit ...    82  1e-14
gi|9653251 NADH dehydrogenase subunit 5 [Chondrus crispus] >gi|1...    82  1e-14
sp|P50973|NUON_RHOCA NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO...    82  1e-14
pir||E71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    82  1e-14
sp|P29926|NQOE_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 14 (NA...    81  3e-14
gb|AAF02924.1|AF092363_1 (AF092363) NADH dehydrogenase subunit I...    81  3e-14
emb|CAC07176.1| (AJ249405) NADH dehydrogenase [Aphelandra squarr...    81  3e-14
sp|O86350|NUOL_MYCTU NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO...    80  4e-14
pir||A72281 hypothetical protein TM1211 - Thermotoga maritima (s...    80  4e-14
sp|P50367|NU5M_RHIST NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|...    80  6e-14
prf||2204231G NADH ubiquinone oxidoreductase [Rhodobacter capsul...    80  6e-14
sp|P50939|NUOL_RHOCA NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO...    80  6e-14
sp|P29924|NQOC_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 12 (NA...    78  2e-13
pir||B70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain...    78  2e-13
gi|5835550 NADH dehydrogenase subunit 4 [Alligator mississippien...    78  2e-13
pir||JQ1447 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    78  2e-13
sp|Q37680|NU5M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|...    78  2e-13
sp|P48917|NU4M_HANWI NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4            78  2e-13
sp|Q56228|NQOD_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 13 (NA...    77  4e-13
pir||A70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain...    77  4e-13
gi|7374125 NADH dehydrogenase subunit 5 [Penaeus monodon] >gi|72...    77  4e-13
gb|AAC99598.1| (AF028682) NADH dehydrogenase subunit 2 [Laudakia...    77  5e-13
gb|AAC99601.1| (AF028683) NADH dehydrogenase subunit 2 [Laudakia...    77  5e-13
sp|P10330|NU5M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|...    76  8e-13
gi|8928592 NADH dehydrogenase subunit 5 [Paramecium aurelia] >gi...    76  8e-13
gi|5835215 NADH dehydrogenase subunit 4 [Felis catus] >gi|135256...    76  8e-13
pir||F71683 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain...    76  1e-12
gi|7525007 NADH dehydrogenase subunit 5 [Dictyostelium discoideu...    76  1e-12
gi|5834890 NADH dehydrogenase subunit 4 [Caenorhabditis elegans]...    75  1e-12
gi|5835290 NADH dehydrogenase subunit 5 [Albinaria caerulea] >gi...    75  1e-12
pir||T14241 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    75  1e-12
gi|7549735 NADH dehydrogenase subunit 5 [Ciconia ciconia] >gi|74...    75  1e-12
gb|AAF63427.1|AF150756_9 (AF150756) NADH dehydrogenase subunit 5...    75  1e-12
sp|P50368|NU5M_SCHCO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|...    75  2e-12
sp|P05510|NU5M_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|...    75  2e-12
gi|5835884 NADH dehydrogenase subunit 5 [Ceratitis capitata] >gi...    75  2e-12
gi|5834854 NADH dehydrogenase subunit 5 [Gallus gallus] >gi|1287...    74  3e-12
gi|5835230 NADH dehydrogenase subunit 5 [Protopterus dolloi] >gi...    74  3e-12
gi|5835745 NADH dehydrogenase subunit 4 [Chrysemys picta] >gi|75...    74  4e-12
gi|5836026 NADH dehydrogenase subunit 4 [Eumeces egregius] >gi|5...    74  4e-12
gb|AAF77284.1| (AF200832) NADH dehydrogenase subunit 5 [Drosophi...    73  5e-12
gb|AAF78607.1|AF260826_6 (AF260826) NADH subunit 5 [Cochliomyia ...    73  5e-12
pir||T13795 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    73  7e-12
gb|AAF65709.1|AF222547_1 (AF222547) NADH dehydrogenase subunit 2...    73  7e-12
gb|AAF77298.1| (AF200833) NADH dehydrogenase subunit 5 [Drosophi...    73  7e-12
gb|AAB33356.1| (S76764) NADH dehydrogenase subunit 5, ND5 [Droso...    73  9e-12
pir||S50343 ND5 protein - fruit fly (Drosophila simulans) mitoch...    73  9e-12
gb|AAF66609.1| (AF142407) NADH dehydrogenase subunit V [Gallus g...    73  9e-12
emb|CAB91058.1| (AJ400907) NADH dehydrogenase subunit 5 [Drosoph...    73  9e-12
gb|AAF77233.1| (AF200828) NADH dehydrogenase subunit 5 [Drosophi...    73  9e-12
gb|AAF77251.1| (AF200829) NADH dehydrogenase subunit 5 [Drosophi...    73  9e-12
gi|5835621 NADH dehydrogenase subunit 5 [Struthio camelus] >gi|6...    72  1e-11
gi|5835118 NADH dehydrogenase subunit 5 [Equus caballus] >gi|135...    72  1e-11
emb|CAB11636.1| (Z98972) Nad5 protein [Diphyscium sessile]             72  1e-11
gi|5834837 NADH dehydrogenase subunit 5 [Drosophila yakuba] >gi|...    71  2e-11
gi|5835153 NADH dehydrogenase subunit 5 [Gorilla gorilla] >gi|25...    71  2e-11
pir||B59154 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    71  2e-11
gb|AAF77271.1| (AF200831) NADH dehydrogenase subunit 5 [Drosophi...    71  2e-11
gb|AAF77377.1| (AF200839) NADH dehydrogenase subunit 5 [Drosophi...    71  2e-11
gb|AAF77415.1| (AF200842) NADH dehydrogenase subunit 5 [Drosophi...    71  2e-11
gb|AAF77441.1| (AF200844) NADH dehydrogenase subunit 5 [Drosophi...    71  2e-11
gi|9838484 NADH dehydrogenase subunit 5 [Beta vulgaris] >gi|9087...    71  2e-11
gb|AAG00754.1|AF128506_2 (AF128506) NADH dehydrogenase subunit 2...    71  2e-11
gi|5835241 NADH dehydrogenase subunit 5 [Drosophila melanogaster...    71  3e-11
gb|AAA69710.1| (M37275) NADH dehydrogenase 5 [Drosophila melanog...    71  3e-11
gi|5835259 NADH dehydrogenase subunit 5 [Locusta migratoria] >gi...    71  3e-11
gi|11465636 NADH dehydrogenase subunit 5 [Porphyra purpurea] >gi...    71  3e-11
gi|5835689 NADH dehydrogenase subunit 4 [Ixodes hexagonus] >gi|7...    71  3e-11
gi|5835901 NADH dehydrogenase subunit 5 [Salvelinus fontinalis] ...    71  3e-11
sp|Q36428|NU5M_LOCMI NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5            71  3e-11
gb|AAF77259.1| (AF200830) NADH dehydrogenase subunit 5 [Drosophi...    71  3e-11
gi|11182470 NADH dehydrogenase subunit 4 [Triatoma dimidiata] >g...    71  3e-11
gi|11466906 NADH-ubiquinone oxidoreductase subunit 5 [Podospora ...    70  5e-11
gi|6137777 NADH dehydrogenase subunit 4 [Platynereis dumerilii] ...    70  5e-11
gi|7555772 NADH dehydrogenase subunit 5 [Ciconia boyciana] >gi|7...    70  5e-11
gi|11466579 NADH dehydrogenase subunit 5 [Rhodomonas salina] >gi...    70  5e-11
emb|CAA39308.1| (X55786) ORF1269 [Beta vulgaris]                       70  6e-11
gi|5835957 NADH dehydrogenase subunit 5 [Falco peregrinus] >gi|7...    70  6e-11
pir||S14115 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5...    70  6e-11
gi|9838426 orf399 [Beta vulgaris]                                      70  6e-11
gi|5835139 NADH dehydrogenase subunit 5 [Pan paniscus] >gi|25069...    69  8e-11
gb|AAC99610.1| (AF028686) NADH dehydrogenase subunit 2 [Laudakia...    69  8e-11
gi|5835775 NADH dehydrogenase subunit 5 [Orycteropus afer] >gi|7...    69  8e-11
gb|AAG00709.1|AF128491_2 (AF128491) NADH dehydrogenase subunit 2...    69  8e-11
gb|AAG23669.1|AF288091_14 (AF288091) NADH dehydrogenase subunit ...    69  8e-11

>pir||B75102 NADH dehydrogenase (ubiquinone) chain 4 related PAB0806 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5458631|emb|CAB50119.1| (AJ248286) NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 4 related (EC 1.6.5.3) [Pyrococcus
           abyssi]
           Length = 479
           
 Score =  929 bits (2375), Expect = 0.0
 Identities = 479/479 (100%), Positives = 479/479 (100%)

Query: 1   MNAVIMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSR 60
           MNAVIMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSR
Sbjct: 1   MNAVIMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSR 60

Query: 61  GGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLI 120
           GGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLI
Sbjct: 61  GGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLI 120

Query: 121 GAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIYFQTG 180
           GAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIYFQTG
Sbjct: 121 GAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIYFQTG 180

Query: 181 YLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
           YLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA
Sbjct: 181 YLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240

Query: 241 PIYGLILLSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG 300
           PIYGLILLSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG
Sbjct: 241 PIYGLILLSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG 300

Query: 301 NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLG 360
           NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLG
Sbjct: 301 NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLG 360

Query: 361 ITIGGVAKSYLATTEKAIIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGVLT 420
           ITIGGVAKSYLATTEKAIIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGVLT
Sbjct: 361 ITIGGVAKSYLATTEKAIIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGVLT 420

Query: 421 VLVGIELGGKLSKYDLLIPLAFLTFYALRGYLTRRDYVIRLEANHGVALFALILGLFSI 479
           VLVGIELGGKLSKYDLLIPLAFLTFYALRGYLTRRDYVIRLEANHGVALFALILGLFSI
Sbjct: 421 VLVGIELGGKLSKYDLLIPLAFLTFYALRGYLTRRDYVIRLEANHGVALFALILGLFSI 479


>pir||H71084 hypothetical protein PH0941 - Pyrococcus horikoshii
           >gi|3257355|dbj|BAA30038.1| (AP000004) 481aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 481
           
 Score =  742 bits (1895), Expect = 0.0
 Identities = 365/481 (75%), Positives = 423/481 (87%), Gaps = 2/481 (0%)

Query: 1   MNAVIMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSR 60
           MNA++MV+ PVIFS+L+YIFGTFRIEGTFRA+FRLPL  EVK LY +G+FLPMLL P  +
Sbjct: 1   MNAIVMVLGPVIFSILVYIFGTFRIEGTFRAKFRLPLAQEVKILYFIGIFLPMLLLPFVQ 60

Query: 61  GGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLI 120
           GGVVG YPRE+GIEV LD++S TF++AEF+VFG SSLYL+ R TNWKELSLLLLMH+GLI
Sbjct: 61  GGVVGNYPRELGIEVNLDFISMTFILAEFIVFGTSSLYLLPRATNWKELSLLLLMHAGLI 120

Query: 121 GAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIYFQTG 180
           GAFISKDYFNFY+FMELS+VSSYALIAS+D++AAF YL+LSMTASY+ ILALGMIYFQTG
Sbjct: 121 GAFISKDYFNFYIFMELSSVSSYALIASKDKKAAFNYLILSMTASYIFILALGMIYFQTG 180

Query: 181 YLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
           YLNVELAS VGLRDDTPLRLAA++L+LKAGIFPLH+WLPDAHSNAKTYVSSILSGI VKA
Sbjct: 181 YLNVELASRVGLRDDTPLRLAAVALMLKAGIFPLHMWLPDAHSNAKTYVSSILSGIVVKA 240

Query: 241 PIYGLILLSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG 300
           PIYGLILLS LG+  FLKPFA LSM FGV+MAILQFNAKRLLAYHTVSQMGYILLG+ST 
Sbjct: 241 PIYGLILLSRLGNFEFLKPFAYLSMIFGVLMAILQFNAKRLLAYHTVSQMGYILLGVSTS 300

Query: 301 NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLG 360
           N+ GATLYSLAHA+FK GLFLGVG I+D R+R +L  LGS+N LL++SI +LSLAISGLG
Sbjct: 301 NITGATLYSLAHAIFKSGLFLGVGGIVDTRRRMELNKLGSKNSLLLISILMLSLAISGLG 360

Query: 361 ITIGGVAKSYLATT--EKAIIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGV 418
           +TIGGV K+ L T+  +K IIYAVSFGTAFSFSKLNYYLWKG+GNEP+N+S+LPSL  G 
Sbjct: 361 VTIGGVGKAQLVTSKLDKIIIYAVSFGTAFSFSKLNYYLWKGHGNEPSNYSVLPSLISGT 420

Query: 419 LTVLVGIELGGKLSKYDLLIPLAFLTFYALRGYLTRRDYVIRLEANHGVALFALILGLFS 478
           L  ++G  LGGKLS YD LI LA L+FYA+R +L +RDY+I++  N   ALFALILG+ S
Sbjct: 421 LAFILGFMLGGKLSTYDSLILLAALSFYAVRNHLVKRDYLIKVNLNESAALFALILGVVS 480

Query: 479 I 479
           I
Sbjct: 481 I 481


>pir||C72295 hypothetical protein TM1105 - Thermotoga maritima (strain MSB8)
           >gi|4981650|gb|AAD36181.1|AE001769_11 (AE001769) NADH
           dehydrogenase, putative [Thermotoga maritima]
           Length = 452
           
 Score =  158 bits (396), Expect = 1e-37
 Identities = 123/413 (29%), Positives = 208/413 (49%), Gaps = 25/413 (6%)

Query: 72  GIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNF 131
           G+ + LD  S  FLI   +V     L +  +  N    +LLL++   L  AF+S D FN 
Sbjct: 55  GVHLLLDQTSYFFLILTAVVL----LAVFTKGLNVSLSNLLLILLGALNLAFVSYDLFNI 110

Query: 132 YVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILALGMIYFQTGYLNVELA 187
           YV +E+ ++ ++ L+    ++    +AFKYL+L      + ++ +G++Y   G L++   
Sbjct: 111 YVTVEVVSLITFLLVVEGRKKIQYWSAFKYLILGTVGMNLYLIGIGVLYAGNGTLSISDI 170

Query: 188 SEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLIL 247
           S+V   D     L A+ L+L+AG+F   +WLP  HS A+T +S++LSG+ VK+ +Y L+ 
Sbjct: 171 SKV---DSFASVLVAVGLLLRAGVFLFSMWLPQVHSEAETPISAVLSGVVVKSAVYALVR 227

Query: 248 LSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATL 307
           L ++ +   +K FAI S   GV+ A L  + KR+LAY T+SQ+G +L    T     A +
Sbjct: 228 LEHVVNWDVVKIFAIFSALSGVLFAFLSKDYKRILAYSTLSQIGIVLASPVT-----APV 282

Query: 308 YSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIG--- 364
           Y+LAH +FK  LFL    + D    +D+      +    +S+++ SL+I GL    G   
Sbjct: 283 YALAHGVFKSWLFL----LKDELPERDVTKWKRLDFWTWLSLSLASLSIMGLPGLAGFSK 338

Query: 365 GVAKSYLATTEKAIIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGVLTVLVG 424
            +    L   EK  +  V  GTA SF K     ++     P  ++  P L +  LT+ + 
Sbjct: 339 NLVLEQLHGWEKIFMEVVFVGTAASFWKFLLKPFEFKKKLPGMYN--PVLLIASLTIGLY 396

Query: 425 IELGGKLSKYDLLIPLAFLTFYALRGYLTRRDYVIRLEANHGVALFALILGLF 477
                ++ +  LL+    L  +  +     +  +   E+  GV L  +++ LF
Sbjct: 397 FASWERVLESFLLMGAGLLVHFLFKNLKIEKYPLEDFESMLGVYLLGVVVCLF 449


>pir||G75113 NADH dehydrogenase I chain M PAB0490 - Pyrococcus abyssi  (strain
           Orsay) >gi|5458135|emb|CAB49624.1| (AJ248285) NADH
           DEHYDROGENASE I SUBUNIT M [Pyrococcus abyssi]
           Length = 618
           
 Score =  152 bits (380), Expect = 9e-36
 Identities = 140/499 (28%), Positives = 237/499 (47%), Gaps = 96/499 (19%)

Query: 1   MNAVIMVI--SPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPML---- 54
           MN +++ +  SP++   L ++F    I                + + ++G  +P++    
Sbjct: 1   MNELLLAVIFSPLVAGFLAWLFNVKGIR---------------EGIGVIGALIPLIGLIK 45

Query: 55  LFPLSRGGV-----VGGYPREIGIEVG-LDWVSSTFLIAEFLVFGASSLY-LVKRVTNWK 107
           L+P    GV     VGG+  ++G  +  L+W+ S  +IA   V G S++  +V    +  
Sbjct: 46  LYPSLGQGVSYTITVGGF--KLGFMMSHLNWIFS--MIAA--VVGVSAILGMVSTAKDGY 99

Query: 108 ELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYV 167
           E    L+  +G +G F ++D   F++F E+   +S+ ++   +R A+ KY LLS+  +Y 
Sbjct: 100 EWLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRAASLKYFLLSIMGAYA 159

Query: 168 LILALGMIYFQTG---------YLNVELASEV--GLRDDTPLRLAAISLI------LKAG 210
           +++A+G+IY +TG         +   E  S +  G    + L +A I L+      +KAG
Sbjct: 160 MLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAG 219

Query: 211 IFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI---------LLSNLGDLSFLKPFA 261
           +FPLHVW PDA+S      ++I SG+  KA +YG I         LL +LG +     F 
Sbjct: 220 MFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFG 279

Query: 262 I-------LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLA 311
                   L++  G I+A LQ + +RL AY ++SQ+GYIL+GL  G   G   A  ++++
Sbjct: 280 YVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAIS 339

Query: 312 HAMFKGGLFLGVGAIIDARKRKDLKYLGSRN-----ILLIVSIAILSLAISGLGITIGGV 366
           HA+FKG  FL V  +I    + + K  G           +  IAILSLA  G+   +G  
Sbjct: 340 HALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLA--GIPPLVGFA 397

Query: 367 AK-----SYLATTEKAIIYAVSFGTAFSF---SKLNYYLWKGYGNEPTNFS--------- 409
           +K     + ++     +   V FG+A  F    +  Y +W  +G  P++           
Sbjct: 398 SKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVW--FGQRPSDIEDTKDAPLPL 455

Query: 410 ILPSLTLGVLTVLVGIELG 428
            +    LG L V+ G+  G
Sbjct: 456 AIGMAILGTLNVVFGVAPG 474


>pir||F71019 hypothetical protein PH1451 - Pyrococcus horikoshii
           >gi|3257875|dbj|BAA30558.1| (AP000006) 617aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 617
           
 Score =  151 bits (378), Expect = 1e-35
 Identities = 147/488 (30%), Positives = 233/488 (47%), Gaps = 75/488 (15%)

Query: 1   MNAVIMV-ISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLS 59
           MN ++++  SP++  +L ++    RI G    R  L +   +  L  L    P L  P+ 
Sbjct: 1   MNELLLITFSPLVAGVLAWLV---RIRGV---RESLGILGAIVPLAFLIKLYPSLDHPIR 54

Query: 60  RGGVVGGYPREIGIEVG-LDWVSSTF--LIAEFLVFGASSLYLVKRVTNWKELSLLLLMH 116
               +GG+  E+G  +  L+WV S    ++    VFG +S    K    W   SL+ L  
Sbjct: 55  ATISLGGF--ELGFSMSHLNWVFSMIAAVVGLSAVFGMAST--AKDSYEWL-FSLMSL-- 107

Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIY 176
           +G +G F+++D   F++F E+   SS+ ++   +R A+ KYL+LS+  +Y +++A+G+IY
Sbjct: 108 TGALGIFMAQDLVTFFIFWEVMTFSSFMMVLKFNRAASLKYLILSIIGAYSMLVAIGIIY 167

Query: 177 FQTGYL-----------NVELASEVGLRDDTPLRLAAISLI------LKAGIFPLHVWLP 219
            +TG                LA   G    +   +A I L+      +KAG+FPLHVW P
Sbjct: 168 AKTGTFTFADISAFFRKEAMLAMLGGKSTFSRFDMALIYLLFLMAFGVKAGMFPLHVWAP 227

Query: 220 DAHSNAKTYVSSILSGIAVKAPIYGLILL------SNLGDLSFLKPFAI----------L 263
           DA+S      ++I SG+  K  +YG ILL        L DL   K   +          L
Sbjct: 228 DAYSETDQSYTAIFSGVLSKTGVYGFILLYVLMYGKLLIDLGQFKGTPLFGYIIAFLGGL 287

Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLF 320
           ++  G ++A LQ + ++L AY ++SQ+GYIL+GL  G   G   A  ++++HA+FKG  F
Sbjct: 288 TIIIGGVLAALQEDIRKLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFF 347

Query: 321 LGVGAIIDARKRKDLKYLGSRN-----ILLIVSIAILSLAISGLGITIGGVAKSYL---A 372
           L V  II    + + K  G           +  IAILSLA  G+   +G  +K  +    
Sbjct: 348 LVVATIIYRTGKTEFKDFGGLAEKMPFTFAMAFIAILSLA--GIPPLVGFASKWLIFEAV 405

Query: 373 TTEKAIIYA--VSFGTAFSF---SKLNYYLWKGY---GNEPTNFSILPSL----TLGVLT 420
            ++K  I    + FG+A  F    +  Y +W G      E T  + LP       LG L 
Sbjct: 406 ISQKLPILGGMLFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMGILGTLN 465

Query: 421 VLVGIELG 428
           V+ G+  G
Sbjct: 466 VVFGVAPG 473


>pir||B71017 hypothetical protein PH1431 - Pyrococcus horikoshii
           >gi|3257855|dbj|BAA30538.1| (AP000006) 510aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 510
           
 Score =  150 bits (374), Expect = 4e-35
 Identities = 115/368 (31%), Positives = 188/368 (50%), Gaps = 51/368 (13%)

Query: 107 KELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLS 161
           K  +L+L++  G++G  I+ D FNFYVF+E+ +++SYAL+A ++      EA  KY+ + 
Sbjct: 114 KYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVG 173

Query: 162 MTASYVLILALGMIYFQ-----TGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHV 216
             AS +++L + ++Y Q      GYL V+++    +     L L    L+ K+G  P+H+
Sbjct: 174 SLASSLVLLGIALLYGQYGTLTMGYLAVKMSENPTIVAKIALSLFLGGLLFKSGASPVHM 233

Query: 217 WLPDAHSNAKTYVSSILSGIAVKAP-IYGL-----------ILLSNLGDLSFLKPFAILS 264
           WL DAH  A + +S++LSG+ +K   IY +           I L+ +G L  +  FA ++
Sbjct: 234 WLADAHPAAPSSISAMLSGLVIKVGGIYAIARVVFSIFLPAINLATVGWLVII--FACIT 291

Query: 265 MAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNV-YGATLYSLA----------HA 313
           +  G  MA++Q + KRLLAY +V Q+GYILLGL  G V YG+ +  LA          HA
Sbjct: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGMVAYGSKIGELALAGAIYHIVNHA 351

Query: 314 MFKGGLFLGVGAIIDARKRKDLKYL-GSRNILLIVSIAILSLAISGLGI-TIGGVAKSYL 371
           M K  LFL  GA++     ++L  L G    +   + A L  A + +G+  + G A  +L
Sbjct: 352 MMKALLFLVAGAVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWL 411

Query: 372 ATTEKAIIYAV-----SFGTAFSFSKLNYYLWKGYG---------NEPTNFSILPSLTLG 417
                A+   +       GTAF  +     L+  +G          +P    ++P   L 
Sbjct: 412 IYESSALFNPIIGSIAIIGTAFCTAAYVRVLFTFFGRPNEKVMRAKDPGALMLIPMFILV 471

Query: 418 VLTVLVGI 425
           +  +L+GI
Sbjct: 472 IAIILMGI 479


>pir||F75059 NADH-dehydrogenase related PAB1402 - Pyrococcus abyssi  (strain
           Orsay) >gi|5458884|emb|CAB50371.1| (AJ248287)
           NADH-dehydrogenase related [Pyrococcus abyssi]
           Length = 499
           
 Score =  149 bits (373), Expect = 6e-35
 Identities = 130/434 (29%), Positives = 216/434 (48%), Gaps = 51/434 (11%)

Query: 41  VKALYLLGVFLPML----LFPLSRGGVV------GGYPREIGIEVGLDWVSSTFLIAEFL 90
           ++A  LLG  L ++    LF L+    +      G +   IGI   +D +SS   +   +
Sbjct: 32  IQAYALLGTGLTLISTFKLFQLTYSSSLPIVYTFGKWRAPIGIVYEVDRLSSLIALVTAV 91

Query: 91  VFGASSLYLVKRVTNWKEL----SLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALI 146
           +    ++Y  + +   K L    +L L + SGL+G  ++ D FN +V +E++++++YAL+
Sbjct: 92  LMFLIAIYSYRYLEREKGLEWYYTLYLGLESGLLGVLLTGDAFNLFVMIEVTSIAAYALV 151

Query: 147 AS-QDRE----AAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASE-------VGLRD 194
              +DR+    A  KY L+    + +  LALG+ Y   G +N    SE       V L  
Sbjct: 152 MFYRDRKDSVLAGLKYALIGAVGTTMYFLALGVFYGTFGTVNFADLSEKLHSSGNVVLAS 211

Query: 195 DTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI-----LLS 249
              L LA  + ++KA IFP H WLP+AH  A + +S+ILSG+ V   +Y +I     L S
Sbjct: 212 SVALVLATWAFLIKATIFPNHFWLPEAHPAAPSPISAILSGLVVNVGVYAMIRFLYTLYS 271

Query: 250 NLGDLSFLKPFAI-----LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG 304
            L  +     FAI     +S  FG +M   Q + KRL+AY T+  MGY+L+ +  G   G
Sbjct: 272 GLSWIIGWLSFAIIILGAISSIFGALMMNTQRDVKRLVAYSTIMHMGYLLMAVGVGTQLG 331

Query: 305 ---ATLYSLAHAMFKGGLFLGVGAII---DARKRKDLKYLGSRNILLIVSIAILSLAISG 358
              A  + + HA+ K  LFL VG  I    +R   DL  LG +  +   S+AI +L++ G
Sbjct: 332 LQAALFHLINHAIAKALLFLAVGVFIHVAGSRNIDDLAGLGRKMPITTFSLAIATLSLVG 391

Query: 359 LGITIGGVAKSYL--ATTEK----AIIYAVSFGTAF-SFSKLNYYLWKGYGNEPTNFSIL 411
           +       +K  L  A  EK    A++ AV+   A  ++ ++ Y LW G   E  +  + 
Sbjct: 392 IPPLNVFFSKLLLFNALLEKSFFLALVIAVTSVIALVAYMRVLYTLWLGKPRE--DLDVK 449

Query: 412 PSLTLGVLTVLVGI 425
            S+++ ++ +++ +
Sbjct: 450 ESISMSMICLILAL 463


>gb|AAG19080.1| (AE005007) NADH dehydrogenase/oxidoreductase; NdhG2 [Halobacterium
           sp. NRC-1]
           Length = 380
           
 Score =  144 bits (360), Expect = 2e-33
 Identities = 92/286 (32%), Positives = 154/286 (53%), Gaps = 26/286 (9%)

Query: 113 LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVL 168
           +L+ +GL G  ++ D FN YVF+E++ +++YAL+A    S+   AA KYLL+    + + 
Sbjct: 1   MLLVAGLSGMTVTADLFNMYVFLEITGLTAYALVAAGEDSRSTVAALKYLLVGTFGASLF 60

Query: 169 ILALGMIYFQTGYLNV-ELASEVGLRD----DTPLRLAAISLILKAGIFPLHVWLPDAHS 223
           +L +G  Y  TG LN+ +LA+++   D         L  + L +K  +FPLH W PDA++
Sbjct: 61  LLGIGYAYVGTGTLNMADLAAKLADADPVLAQAAFALIVVGLFIKVAVFPLHTWQPDAYA 120

Query: 224 NAKTYVSSILSGIAVKAPIYGLI-----------LLSNLGDLSFLKPFAILSMAFGVIMA 272
            A   VS+++S +      Y L+           L S     + L   A++S+  G ++A
Sbjct: 121 GAPDTVSALISALVSTVAAYALLRVVYTVFGAGFLDSTPVARAILIGGAVVSIVAGSLLA 180

Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAI--- 326
           + Q   KR+LAY +VSQ G IL  ++ GN   + GA ++ + HA+ KGGLFL  G +   
Sbjct: 181 VSQSEIKRVLAYSSVSQFGLILAAIAIGNDTALTGAAIHLVGHAVMKGGLFLTAGVVATE 240

Query: 327 IDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYLA 372
             AR   +   L  R+ +   +  +L++++ G+  T+G   K Y+A
Sbjct: 241 TGARTIDEFDGLADRSPVAAGAFGVLAVSMVGVPPTVGFAGKWYIA 286


>gb|AAF21815.1|AF097740_4 (AF097740) multiple resistance and pH regulation related protein D
           [Bacillus firmus]
           Length = 493
           
 Score =  139 bits (348), Expect = 5e-32
 Identities = 128/467 (27%), Positives = 227/467 (48%), Gaps = 55/467 (11%)

Query: 6   MVISPVIFSLLIYIFGTFRIE-GTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGV- 63
           +VI P+   L+ +I G+F I      +  R+   + V  + L+ ++L + ++   + G+ 
Sbjct: 4   LVILPI---LIPFIVGSFLILFAKHHSLQRVISGFAVVGMLLVSIYLAVDVY---QNGIT 57

Query: 64  ---VGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKE----LSLLLLMH 116
              +G +    GI +  D  ++  +I   +V      +  + +++ +E          + 
Sbjct: 58  VLELGNWQAPFGIVLVADLFATMMVILASIVGVVCLFFAFQTISSEREKYYFYPFYFFLL 117

Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMTASYVLILA 171
           +G+ GAF++ D FN +VF E+  ++SY LI       Q RE+  KY+++++ AS + I+ 
Sbjct: 118 AGVNGAFLTGDLFNLFVFFEVMLIASYILIVLGGTKYQLRES-LKYVVINVFASILFIVG 176

Query: 172 LGMIYFQTGYLNV-ELASEVGLRDDTPLR--LAAISLI---LKAGIFPLHVWLPDAHSNA 225
           +  IY  TG LN+ +LA +VG  + T +   +A I L+   +K G+FPL+ WLP ++   
Sbjct: 177 VAYIYSITGTLNMADLAVKVGELEQTGVLNVIAVIFLVVFAMKGGLFPLYFWLPRSYFGP 236

Query: 226 KTYVSSILSGIAVKAPIYGLILLSNL---GDLSFLKPFAI----LSMAFGVIMAILQFNA 278
              ++++  G+  K  IY ++    L    D  F     +    L+M FGV+ A+ QF+ 
Sbjct: 237 PAAIAALFGGLLTKVGIYAIMRTFTLIFNHDPGFTHTLILILAGLTMFFGVLGAVSQFDF 296

Query: 279 KRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDL 335
           KR+L+YH +SQ+GY+++GL       + GA  Y   H + K  LFL  GA        DL
Sbjct: 297 KRILSYHIISQVGYMVMGLGIYTQLAIAGAIYYIAHHIIVKAALFLFAGATQRITGTTDL 356

Query: 336 KYLG---SRNILLIVSIAILSLAISGLGITIGGVAKSYLATTE--------KAIIYAVSF 384
           K +G     +  L     I +++++G+    G  +K  L             A+  AV  
Sbjct: 357 KKMGGLLKTHPWLAWMFFISAISLAGIPPLSGFFSKFALILAAILNENYIIAAVALAVGL 416

Query: 385 GTAFSFSKLNYYLWKG---YGNEPTNFSI----LPSLTLGVLTVLVG 424
            T FS  K+  Y + G   +  E  NF +    LP + L  LT+++G
Sbjct: 417 LTLFSMMKIFIYAFWGEQKHTEEQANFKVGKLLLPIVPLVALTIILG 463


>dbj|BAB05035.1| (AP001511) Na+/H+ antiporter [Bacillus halodurans]
           Length = 493
           
 Score =  139 bits (347), Expect = 6e-32
 Identities = 128/468 (27%), Positives = 216/468 (45%), Gaps = 57/468 (12%)

Query: 6   MVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGV-- 63
           +VI P++   ++  F     +     RF   +T  +  L L   +L  L++   + G+  
Sbjct: 4   LVILPILLPFIVGSFLILFAKHHGIQRFLTAIT--MVGLLLFSFYLATLVY---QEGIYT 58

Query: 64  --VGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKE----LSLLLLMHS 117
             +G +P   GI +  D  ++  +I   +V  A   +  + +++ +E        L + +
Sbjct: 59  LQLGNWPAPFGIVLVADMFATMMIILSSIVGVACLFFAFQTISSERERYYFYPFYLFLIA 118

Query: 118 GLIGAFISKDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMTASYVLILAL 172
           G+ GAF++ D FN +VF E+  ++SYALI       Q RE+ FKY+++++ AS + I+ +
Sbjct: 119 GVNGAFLTGDLFNLFVFFEVMLIASYALIVLGGTKYQLRES-FKYVVINVFASILFIVGV 177

Query: 173 GMIYFQTGYLN-VELASEVG-LRDDTPLRLAAISLI----LKAGIFPLHVWLPDAHSNAK 226
             +Y  TG LN  +LA  V  L     L + AI  +    +K  +FPL+ WLP ++    
Sbjct: 178 AYLYSVTGTLNFADLAIRVAELEQQGVLNVIAILFLVVFGMKGALFPLYFWLPRSYYGPP 237

Query: 227 TYVSSILSGIAVKAPIYGLILLSNL---GDLSF----LKPFAILSMAFGVIMAILQFNAK 279
             ++++  G+  K  IY +I    L    D SF    +   A  +M FGV+ A+ QF+ K
Sbjct: 238 AAIAALFGGLLTKVGIYAIIRTFTLIFNHDPSFTHTIILALAGFTMFFGVLGAVSQFDFK 297

Query: 280 RLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLK 336
           R+L+YH +SQ+GY+++GL       + GA  Y   H + K  LFL  GA        +LK
Sbjct: 298 RILSYHIISQVGYMVMGLGIFTPLALAGAIYYIAHHIIVKAALFLFAGATEKITGTTELK 357

Query: 337 YLGSR-------------NILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYAVS 383
            +G               + + +  I  LS   S   + + G  +        A+I  V 
Sbjct: 358 KMGGLLKTHPWLAWLFFISAISLAGIPPLSGFFSKFALILAGFEEGRYVIVTVALI--VG 415

Query: 384 FGTAFSFSKLNYYLWKG-------YGNEPTNFSILPSLTLGVLTVLVG 424
             T FS  K+  Y + G           P    +LP   L VLT+++G
Sbjct: 416 LLTLFSMMKIFIYAFWGEQKHTEQQAKMPIGKLLLPIAPLVVLTIVLG 463


>pir||F75115 co-induced hydrogenase related, chain M PAB1888 - Pyrococcus abyssi
           (strain Orsay) >gi|5458150|emb|CAB49639.1| (AJ248285)
           CO-induced hydrogenase related, subunit M [Pyrococcus
           abyssi]
           Length = 510
           
 Score =  137 bits (341), Expect = 3e-31
 Identities = 117/393 (29%), Positives = 193/393 (48%), Gaps = 54/393 (13%)

Query: 85  LIAEFLVFGAS--SLYLVKRVTNW-KELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVS 141
           LI  F+ F A   SL  +K  T   K  +L+L++  G++G  I+ D FNFYVF+E+ +++
Sbjct: 89  LIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIA 148

Query: 142 SYALIAS-----QDREAAFKYLLLSMTASYVLILALGMIYFQ-----TGYLNVELASEVG 191
           SYAL+A      +  EA  KY+ +   AS  ++L + ++Y Q      GYL V+++    
Sbjct: 149 SYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYGTLTMGYLAVKMSENPT 208

Query: 192 LRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNL 251
           +     L L    L+ K+G  P+H+WL DAH  A + +S++LSG+ +K  I G+  ++ +
Sbjct: 209 IVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLVIK--IGGIYAIARV 266

Query: 252 GDLSF---LKP---------FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLST 299
               F   + P         FA +++  G  MA++Q + KRLLAY +V Q+GYILLGL  
Sbjct: 267 VFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGI 326

Query: 300 GNV-----------YGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYL-GSRNILLIV 347
           G V            GA  +++ HA+ K  LFL  G ++     ++L  L G    +   
Sbjct: 327 GIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGTRNLNELSGLAKTMPKT 386

Query: 348 SIAILSLAISGLGI-TIGGVAKSYLATTEKAIIYAV-----SFGTAFSFSKLNYYLWKGY 401
           + A L  A + +G+  + G A  +L     A+   +       GTAF  +     L+  +
Sbjct: 387 TFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYVRVLFTFF 446

Query: 402 G---------NEPTNFSILPSLTLGVLTVLVGI 425
           G          +P    +LP   L +  + +G+
Sbjct: 447 GRPSEKVMKAKDPGATMLLPIFILVIAIIGMGL 479


>pir||S75338 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4, 52K -
           Synechocystis sp. (strain PCC 6803)
           >gi|1652329|dbj|BAA17252.1| (D90904) NADH dehydrogenase
           subunit 4 [Synechocystis sp.]
           Length = 487
           
 Score =  130 bits (323), Expect = 4e-29
 Identities = 115/369 (31%), Positives = 178/369 (48%), Gaps = 38/369 (10%)

Query: 72  GIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNF 131
           G+   LD +S  FL+   LV  A  +Y      +    + L+++H+ L  AF+  D+ + 
Sbjct: 71  GVVFQLDALSGYFLLTNALVTLAVLVYCWNTGRSAFFYAQLIILHASLNSAFLCADFMSL 130

Query: 132 YVFMELSAVSSYALIASQDREA-----AFKYLLLSMTASYVLILALGMIYFQTGYLNVEL 186
           YV +E+ A++++ L+ +  RE        +YLLLS TA    ++ + ++Y      N   
Sbjct: 131 YVALEVVAIAAFCLM-TYPREPRIIWLGLRYLLLSNTAMLFYLIGVALVY----KTNQSF 185

Query: 187 ASEVGLRDDTPLRLAAI--SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYG 244
           A   GL    P  +A I   L+ K GIF   +WLP  H  A T VS++LSG  VKA    
Sbjct: 186 AFS-GLTQAPPEAIALIFLGLLTKGGIFLAGLWLPQTHGEAATPVSAMLSGAVVKAGALP 244

Query: 245 LILLSNLGD--LSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNV 302
           L+  + L D  L  ++   + +  FGV+ A+L  ++KR+LA+HTVSQMG++L     G  
Sbjct: 245 LLRCALLSDQLLLLVQILGVATALFGVVYAMLAKDSKRMLAFHTVSQMGFVLAAPIAGG- 303

Query: 303 YGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNIL--LIVSIAILSLAISGLG 360
                Y+L+H + K  LFL  G +      +D K L    I     V + + S +I+G  
Sbjct: 304 ----FYALSHGLVKSSLFLLAGNL----PSRDFKVLKKTPIAAGFWVPLLLASSSIAGFP 355

Query: 361 ITIGGVAKSY----LATTEKAIIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTL 416
           +  G  AK+     L       +   + GTA SFSK  +        +PT       L L
Sbjct: 356 LLAGFEAKTLTLKGLPPWLAIALNIAAVGTAISFSKFVFL-------KPTFVGKTYPLGL 408

Query: 417 GV-LTVLVG 424
           G+ L VL+G
Sbjct: 409 GLALVVLLG 417


>pir||G71019 hypothetical protein PH1452 - Pyrococcus horikoshii
           >gi|3257876|dbj|BAA30559.1| (AP000006) 495aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 495
           
 Score =  129 bits (322), Expect = 5e-29
 Identities = 111/399 (27%), Positives = 190/399 (46%), Gaps = 40/399 (10%)

Query: 65  GGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLY---LVKRVTNWKELSLLLLMHSGLIG 121
           GG+   +GI + +   ++ F++   +V   +SL+   +VK     K   L LL+  G  G
Sbjct: 64  GGWRPPVGINLYIGPFAALFILIIAIVSFLTSLFSMRMVKVEPIDKYAMLFLLLMLGATG 123

Query: 122 AFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVLILALGMIYF 177
              + D FN +VFME++A+++YAL A     +  EA+ KY++L    S   ++ + +IY 
Sbjct: 124 MIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYMILGGIGSSFFLIGVALIYG 183

Query: 178 QTGYLNVELASE-------VGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVS 230
            TG LN+   +E       + +     L L    L ++A +FPL+ W PDA+  A   ++
Sbjct: 184 VTGTLNMAQLAEFASAGKIMPVVAQVGLSLIIFGLAVEAELFPLNAWAPDAYQAAPHPIT 243

Query: 231 SILSGIAVKAPIYG----LILLSNLGD----LSFLKPFAILSMAFGVIMAILQFNAKRLL 282
            + S   VKA +Y     L LL  +      L  L   A L++ F  + A+ Q + KR++
Sbjct: 244 VMFSAFVVKAGLYAMARILYLLQKVNGWDSVLKLLLIMATLTVIFAELSALRQKDVKRMI 303

Query: 283 AYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLFLG---VGAIIDARKRKDLK 336
           AY ++ Q+G I L  S G   G      + L HA+ K  +FLG   VG ++   + +D +
Sbjct: 304 AYSSIGQVGLIALAFSLGTQAGVDAGVFHMLNHAIVKTMMFLGVGYVGVMVGGTRIEDFR 363

Query: 337 YLGSRNILLIVSIAILSLAISGLGITIGGVAKS----YLATTEKAIIYA------VSFGT 386
            LG R  L  +S+++   AIS +G+ +  V  S     +AT +   ++        S   
Sbjct: 364 GLGKRMPLTALSLSV--GAISTVGVPLFNVFWSKFRIIVATIQAGFVWPAVLVLFASVVE 421

Query: 387 AFSFSKLNYYLWKGYGNEPTNFSILPSLTLGVLTVLVGI 425
           A  + +L + +W     E      +    L +  ++VGI
Sbjct: 422 AVYYFRLLHVMWFAGEGERIKEGWIVVFLLLLALIIVGI 460


>pir||F75113 NADH dehydrogenase I N chain PAB2416 - Pyrococcus abyssi  (strain
           Orsay) >gi|5458134|emb|CAB49623.1| (AJ248285) NADH
           DEHYDROGENASE I N SUBUNIT [Pyrococcus abyssi]
           Length = 493
           
 Score =  129 bits (320), Expect = 9e-29
 Identities = 108/401 (26%), Positives = 194/401 (47%), Gaps = 40/401 (9%)

Query: 63  VVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNW---KELSLLLLMHSGL 119
           + GG+   +GI + +   ++ F++   +V   ++++ VK V      K   L LL+  G 
Sbjct: 62  MAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGA 121

Query: 120 IGAFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVLILALGMI 175
            G   + D FN +VFME++A+++YAL A     +  EA+ KY++L    S   ++ + ++
Sbjct: 122 TGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALL 181

Query: 176 YFQTGYLNV----ELASEVG-LRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVS 230
           Y  TG LN+    EL++ +  +     L L    L ++A +FPL+ W PDA+  A   ++
Sbjct: 182 YGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPIT 241

Query: 231 SILSGIAVKAPIYGLILLSNL--------GDLSFLKPFAILSMAFGVIMAILQFNAKRLL 282
            + S   VKA +Y +  +  L          L  +   A L++ F  + A+ Q + KR++
Sbjct: 242 VMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMI 301

Query: 283 AYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLFLGVGAI---IDARKRKDLK 336
           AY ++ Q+G I L  S G   G      + L HA+ K  +FLGVG +   +   + +  +
Sbjct: 302 AYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFE 361

Query: 337 YLGSRNILLIVSIAILSLAISGLGITIGGVAKS----YLATTEKAIIYA------VSFGT 386
            LG R  + + ++A+   A+S +G+ +  V  S     +AT +   I+        S   
Sbjct: 362 GLGKR--MPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVE 419

Query: 387 AFSFSKLNYYLWKGYGNE--PTNFSILPSLTLGVLTVLVGI 425
           A  + +L + +W     E     + ++  L L VL V +GI
Sbjct: 420 AVYYFRLVHTMWFSGSGERVKEGWIVIFLLLLAVLVVAIGI 460


>gi|11467100 nad4 [Marchantia polymorpha] >gi|464242|sp|P26848|NU4M_MARPO
           NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4
           >gi|282790|pir||S25942 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 4 - liverwort (Marchantia polymorpha)
           mitochondrion >gi|786185|gb|AAC09398.1| (M68929) nad4
           [Marchantia polymorpha]
           Length = 495
           
 Score =  127 bits (317), Expect = 2e-28
 Identities = 105/371 (28%), Positives = 178/371 (47%), Gaps = 38/371 (10%)

Query: 71  IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDY 128
           I   +G+D +S  F+I    +     L     V ++K+  ++   +  S LI  F S D 
Sbjct: 80  INFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDL 139

Query: 129 FNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGY-- 181
             FYVF E   +  + +I    S+ R+  AA+++ L ++  S  ++LA+  I+FQTG   
Sbjct: 140 LIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTD 199

Query: 182 LNVELASEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
           L + L +E   R    L +A   S  +K  + P+H+WLP+AH  A T  S IL+GI +K 
Sbjct: 200 LQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKL 259

Query: 241 PIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI 293
             YG +  S        L    F+   +++++ +  +  I Q + K+++AY +V+ M ++
Sbjct: 260 GTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFV 319

Query: 294 LLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS--------RN 342
            +G+ + N+    G+ L  L+H +    LFL VGA+ D  K + +KY G           
Sbjct: 320 TIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFST 379

Query: 343 ILLIVSIAILSLA-----ISGLGITIGGVAKSYLATTEKAIIYAVSFGTAFSFSKLNYYL 397
           I L  ++A +SL      I    I +G   ++ L  T  A+   +  G A+S    N  +
Sbjct: 380 IFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAAL--GMILGAAYSLWLYNRVV 437

Query: 398 WKGYGNEPTNF 408
              +GN   NF
Sbjct: 438 ---FGNFKPNF 445


>pir||H82494 probable NADH dehydrogenase VCA0155 [imported] - Vibrio cholerae
           (group O1 strain N16961) >gi|9657544|gb|AAF96068.1|
           (AE004356) NADH dehydrogenase, putative [Vibrio
           cholerae]
           Length = 498
           
 Score =  126 bits (313), Expect = 6e-28
 Identities = 114/428 (26%), Positives = 199/428 (45%), Gaps = 49/428 (11%)

Query: 65  GGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELS----LLLLMHSGLI 120
           G +P   GI    D +S   ++   ++   S +Y +  ++     +    LL ++ +G+ 
Sbjct: 63  GQWPAPFGIVFVADLLSVGMVMVTAIIGLVSVIYAIADLSAKPSYARYHALLHVLLAGVY 122

Query: 121 GAFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVLILALGMIY 176
           GAF++ D FN YV+ E+  ++S+ L+      Q  + A KY+LL++ ++ V +L++G++Y
Sbjct: 123 GAFLTGDIFNLYVWFEVMLIASFGLMVLDANQQQIDGAIKYVLLNLISTLVFLLSIGLLY 182

Query: 177 FQTGYLNV-ELASEV-GLRDDTPLRLAAISLI---LKAGIFPLHVWLPDAHSNAKTYVSS 231
             TG LN+ +L  +   L  +    LA + L    +KA +FPL  WLP ++    + + +
Sbjct: 183 GATGTLNLADLHDKAQSLAPEMKTMLAGLLLFAFSIKAALFPLFAWLPASYHTLPSAIVA 242

Query: 232 ILSGIAVKAPIYGLILLSNL-------GDLSFLKPFAILSMAFGVIMAILQFNAKRLLAY 284
           + + +  K  +Y L+ +  L       G    L   A L+M  GV+ A  Q++ K++L++
Sbjct: 243 LFAALLTKVGVYALLRVFTLVFPLDGSGWQPVLLGIAALTMLTGVLGAASQYDIKKILSF 302

Query: 285 HTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS- 340
           H +SQ+GY+++GL+      + GA  Y + H + KG LFL  G I        L  LG  
Sbjct: 303 HIISQIGYMIMGLAIYTPLAITGAIFYVIHHILVKGNLFLIGGLIGRKYGTTQLTQLGGV 362

Query: 341 RNILLIVSIAILSLAISGLGI-TIGG------VAKSYLATT---EKAIIYAVSFGTAFSF 390
              +  ++   L  A S  G   + G      V K+ LA       AI   V   T FS 
Sbjct: 363 YRAMPWLTFGFLLAAFSLAGFPPLSGFWGKFLVIKASLAAELYWLAAIALLVGLLTIFSM 422

Query: 391 SKL-NYYLWKG---------YGNEPTNFSILPSLTLGVLTVLVGIELG-----GKLSKYD 435
           +K+ N   WK                    LP L L + ++++G+          L+   
Sbjct: 423 TKIWNEVFWKDAPAALQQETLARSTLGLYALPILVLTLFSLVIGLAAQPFYQFATLAAEQ 482

Query: 436 LLIPLAFL 443
           LL P A++
Sbjct: 483 LLTPTAYI 490


>pir||S74687 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4.2 -
           Synechocystis sp. (strain PCC 6803)
           >gi|1651912|dbj|BAA16838.1| (D90901) NADH dehydrogenase
           subunit 4 [Synechocystis sp.]
           Length = 559
           
 Score =  124 bits (308), Expect = 2e-27
 Identities = 107/353 (30%), Positives = 166/353 (46%), Gaps = 42/353 (11%)

Query: 74  EVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKE-------LSLLLLMHSGLIGAFISK 126
           + GL W  S   I+  LV  A  +  +     W+          L+L++++  IG F+++
Sbjct: 74  QFGLSWSVSVDGISMPLVLLAGLVTTLSIFAAWQVDHKPRLFYFLMLVLYAAQIGVFVAQ 133

Query: 127 DYFNFYVFMELSAVSSYALIA---SQDRE-AAFKYLLLSMTAS-YVLILALGMIYFQTGY 181
           D    ++  EL  V  Y L+     Q R+ AA K+LL +  AS ++L+ ALG+ ++  G 
Sbjct: 134 DMLLLFIMWELELVPVYLLVCIWGGQKRQYAAMKFLLYTAAASVFILVAALGLAFY--GD 191

Query: 182 LNVELASEVGLRDDTPLRLAA-------ISLILKAGIFPLHVWLPDAHSNAKTYVSSILS 234
           +     +E+GL+D  P+ L         I+  +K  IFP H WLPDAH  A   VS IL+
Sbjct: 192 VTTFDIAELGLKD-YPIALELFLYAGLLIAFGVKLAIFPFHTWLPDAHGEASAPVSMILA 250

Query: 235 GIAVKAPIYGLILLSNLGDLS--------FLKPFAILSMAFGVIMAILQFNAKRLLAYHT 286
           G+ +K   YGLI L NLG L          L    ++++ +G   +  Q N KR LAY +
Sbjct: 251 GVLLKMGGYGLIRL-NLGLLEDAHVYFAPILVILGVVNIIYGGFSSFAQDNMKRRLAYSS 309

Query: 287 VSQMGYILLGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRN- 342
           VS MG++LLG+++     + GA L  L+H +    LF   G   D      L  +G+   
Sbjct: 310 VSHMGFVLLGIASFTDLGISGAMLQMLSHGLIAAVLFFLAGVTYDRTHTLSLAQMGNIGK 369

Query: 343 -----ILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYAVSFGTAFSF 390
                  L    A+ SLA+ G+   +  +A         + IY+  F T   F
Sbjct: 370 VMPTVFALFTMGAMASLALPGMSGFVSELA--VFVGVSSSDIYSTPFKTVTVF 420


>gi|11465635 NADH dehydrogenase subunit 4 [Porphyra purpurea]
           >gi|7432354|pir||T11230 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 4 - red alga (Porphyra purpurea)
           mitochondrion >gi|4106942|gb|AAD03109.1| (AF114794) NADH
           dehydrogenase subunit 4 [Porphyra purpurea]
           Length = 488
           
 Score =  124 bits (308), Expect = 2e-27
 Identities = 111/390 (28%), Positives = 185/390 (46%), Gaps = 32/390 (8%)

Query: 75  VGLDWVSSTFLI-AEFLVFGASSLYLVKRVTNWKE-LSLLLLMHSGLIGAFISKDYFNFY 132
           +G+D +S  F+I   +LV     +      T  KE L   L +   LI  F   D   FY
Sbjct: 79  IGIDGISLFFIILTTWLVTTCVLISWTMINTQIKEYLICFLTLEFILIQVFCVLDVIFFY 138

Query: 133 VFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGYLNVELA 187
           +F E   +  + +I    S+ R+  AA+++ + ++  S +++LA+ +IYFQ G  ++++ 
Sbjct: 139 IFFESVLIPMFLIIGIWGSRQRKIRAAYQFFIYTLAGSLLMLLAILVIYFQQGTTDIQIL 198

Query: 188 SEVGLRDDTPLRLAAI---SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYG 244
             V     T + L      SL +K  + P H+WLP+AH+ A T  S IL+G+ +K   YG
Sbjct: 199 WNVSFDTRTQILLWLSFFSSLAVKIPMIPFHIWLPEAHAEAPTAGSVILAGVLLKMGGYG 258

Query: 245 LILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGL 297
            +  S       +L     +   +I++  +  +  I Q + K+++AY +VS MG++ LGL
Sbjct: 259 FLRFSLPMLPEASLYFSPLIYLLSIVAAVYASLTTIRQVDLKKIIAYSSVSHMGFVTLGL 318

Query: 298 STGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSR-NILLIVSIAILS 353
            + N+    G+ +  L+H +    LFL VG + D  K + LKY G    ++ I SI +L 
Sbjct: 319 FSFNLQGLEGSIILMLSHGLVSSALFLCVGILYDRHKTRILKYYGGLVQVMPIFSILLLF 378

Query: 354 LAISGLGI--TIGGVAKSYLATTEKAIIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSIL 411
              S +G   T   V +  + T    +    +F +AFS       L  GY     N    
Sbjct: 379 FTFSNIGFPGTSSFVGEFLVLTGLFKVSSISTFLSAFSM-----ILGAGYSIWLFNRICF 433

Query: 412 PSLTLGVLTVLVGIELGGKLSKYDLLIPLA 441
            SL L  +T    I       ++ +L+PLA
Sbjct: 434 GSLKLQYVTNFQDI----SRREFYILLPLA 459


>pir||B70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoM1 -
           Aquifex aeolicus >gi|2983743|gb|AAC07304.1| (AE000734)
           NADH dehydrogenase I chain M [Aquifex aeolicus]
           Length = 491
           
 Score =  123 bits (306), Expect = 4e-27
 Identities = 90/290 (31%), Positives = 144/290 (49%), Gaps = 40/290 (13%)

Query: 71  IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWK-------ELSLLLLMHSGLIGAF 123
           IG  VG+D ++ +      L+   S L+L   + +WK         +L L + +  IG F
Sbjct: 71  IGYHVGVDGMAIS------LILMTSILFLAAYIWSWKIEDRPSLYFALFLALETACIGVF 124

Query: 124 ISKDYFNFYVFMELSAVSSYALIA--SQDRE--AAFKYLLLSMTASYVLILALGMI---- 175
            + D F FY+F E   +  Y +I     DR+  AA K+ L +   S  L+L +  I    
Sbjct: 125 AALDLFLFYLFWEGMLIPMYFIIGFWGHDRKVYAANKFFLYTFFGSLFLLLGIASILVYG 184

Query: 176 YFQTGYLNVELASEVGLRDDTPLRLAAISLIL-------KAGIFPLHVWLPDAHSNAKTY 228
           YF+TG ++ +    +GL  D PL L  I+ +L       K  ++P H WLPDAH  A T 
Sbjct: 185 YFETGKISFDYFFHLGL--DYPLWLELIAFLLFGIGFAVKIPMWPFHTWLPDAHVEAPTA 242

Query: 229 VSSILSGIAVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRL 281
            S IL+G+ +K   YG +  S       +   +  +   +++++ +  +MAI Q + KRL
Sbjct: 243 GSVILAGVLLKMGTYGFVRFSLPFFPEASKYYIPLIFTLSVVAVIYAAMMAIAQTHMKRL 302

Query: 282 LAYHTVSQMGYILLG---LSTGNVYGATLYSLAHAMFKGGLFLGVGAIID 328
           +AY ++S MG + LG   +++  + GA    +AH +    LFLG G I D
Sbjct: 303 IAYSSISHMGLVTLGTFAMNSDALNGAIYLMIAHGLSSAALFLGAGFIYD 352


>gb|AAF03176.1|AF110138_8 (AF110138) NADH dehydrogenase subunit 4 [Nephroselmis olivacea]
           Length = 500
           
 Score =  123 bits (305), Expect = 5e-27
 Identities = 100/373 (26%), Positives = 178/373 (46%), Gaps = 46/373 (12%)

Query: 73  IEVGLDWVS------STFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISK 126
           I +G+D +S      STFL+   ++ G  S+    R    + +   L++ S +I  F   
Sbjct: 87  IYMGIDGISLFFVILSTFLVPICILVGWVSIQTYVR----EYVIAFLILESCMIAVFCML 142

Query: 127 DYFNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGY 181
           D   FYVF E   +  + +I    S++R+  AA+++ L ++  S +++LA+ +IYFQTG 
Sbjct: 143 DLLLFYVFFESVLIPMFLIIGIWGSRERKIRAAYQFFLYTLFGSVLMLLAIILIYFQTGT 202

Query: 182 LNVELASEVGLRDDTPLRLAAI---SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAV 238
            ++++       +   + L      S  +K  + P+H+WLP+AH  A T  S IL+G+ +
Sbjct: 203 TDLQVLYTTSFSEKRQILLWLAFFASFAVKVPMVPVHIWLPEAHVEAPTSGSVILAGVLL 262

Query: 239 KAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMG 291
           K   YG +  S       +L     +   +I+++ +  +  I Q + K+++AY +V+ M 
Sbjct: 263 KLGTYGFLRFSIPMFPEASLYFTPLIYTMSIIAVIYASLTTIRQIDLKKVIAYSSVAHMA 322

Query: 292 YILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS-RNILLIV 347
           ++ +GL + NV    G+ L  L+H +    LFL VG + D  K + + Y G+  + + I 
Sbjct: 323 FVTIGLFSLNVQGIEGSILLMLSHGLVSSALFLCVGCLYDRHKTRLIPYYGACVHTMPIF 382

Query: 348 SIAILSLAISGLG------------ITIGGVAKSYLATTEKAIIYAVSFGTAFSFSKLNY 395
           S+  L   +  L             I +G    + L TT  A    +  G A+S    N 
Sbjct: 383 SVIFLFFTLGNLSLPGTSSFVGEFLILVGAFQNNTLITTLAAT--GMVLGAAYSLWLYNR 440

Query: 396 YLWKGYGNEPTNF 408
            +   +GN   NF
Sbjct: 441 VV---FGNFKPNF 450


>gi|8954372 NADH dehydrogenase subunit 4 [Cyanidioschyzon merolae]
           >gi|7432334|pir||E58931 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 4 - Cyanidioschyzon merolae
           mitochondrion >gi|4115785|dbj|BAA36523.1| (D89861)
           NADH-ubiquinone oxidoreductase chain 4 [Cyanidioschyzon
           merolae]
           Length = 492
           
 Score =  123 bits (305), Expect = 5e-27
 Identities = 100/392 (25%), Positives = 189/392 (47%), Gaps = 44/392 (11%)

Query: 75  VGLDWVSSTFLIAEFLVFGASSL--YLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFY 132
           +G+D +S  F+I   L+     L  +      N + L L  ++ S L+ AF + D   FY
Sbjct: 83  LGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFY 142

Query: 133 VFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGYLNVELA 187
           +F E   +  + +I    S+ R+  A++++ L ++  S ++++A+ +IYF+TG  N+   
Sbjct: 143 IFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFL 202

Query: 188 SEVGLRDDTPLRLAAI---SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYG 244
             V   +   L L      S  +K  + P H+WLP+AH+ A T  S IL+GI +K   YG
Sbjct: 203 YNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYG 262

Query: 245 LILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGL 297
            +  S       +      +   +I+++ +  +  + Q + K+++AY +++ +GY++LG+
Sbjct: 263 FLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGI 322

Query: 298 STGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYL-GSRNILLIVSIAILS 353
            + NV    G+ L  L H      LFL VG + D  K + LKY  G    + + ++ +  
Sbjct: 323 FSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFF 382

Query: 354 LAISGLG------------ITIGGVAKSYLAT--TEKAIIYAVSF------GTAFSFSKL 393
             ++ +G            I IG +  S +AT  +   II + S+         F   K 
Sbjct: 383 FTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKE 442

Query: 394 NYYLWKGYGNEPTNFSILPSLTLGVLTVLVGI 425
           NY+ +    ++    +++P   L +LT+++G+
Sbjct: 443 NYFKFLQDISKKEFMALIP---LVILTLIMGL 471


>gi|9653250 NADH dehydrogenase subunit 4 [Chondrus crispus]
           >gi|1352567|sp|P48915|NU4M_CHOCR NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 4 >gi|7432305|pir||S59107 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - red
           alga (Chondrus crispus) mitochondrion
           >gi|1334501|emb|CAA87623.1| (Z47547) NADH dehydrogenase
           (ubiquinone), subunit 4 [Chondrus crispus]
           Length = 492
           
 Score =  120 bits (297), Expect = 5e-26
 Identities = 101/396 (25%), Positives = 189/396 (47%), Gaps = 34/396 (8%)

Query: 75  VGLDWVSSTFLIAEFLVFGASSLYLVKRV-TNWKE-LSLLLLMHSGLIGAFISKDYFNFY 132
           +G+D +S  F++   L+  +  L     + TN K+ L   L++   LI  F   D   FY
Sbjct: 81  IGIDGISLFFILLTTLLIISCILVSWSSIQTNLKDYLICFLILEFLLIQVFSVLDLLLFY 140

Query: 133 VFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGYLNVELA 187
           ++ E   +  + ++    S+ R+  AA+++ L ++  S +++LAL  IYFQTG  ++++ 
Sbjct: 141 IYFESVLIPMFLIVGVWGSRQRKIRAAYQFFLYTLIGSLLMLLALLNIYFQTGTTDLQIL 200

Query: 188 SEVGLRDDTPLRLAA---ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYG 244
             +   + + + L      S  +K  + P H+WLP+AH+ A T  S IL+GI +K   YG
Sbjct: 201 WYIQFSEISQIFLWLSFFASFAVKIPMIPFHIWLPEAHAEAPTAGSVILAGILLKMGGYG 260

Query: 245 LILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGL 297
            +  S       ++    F+   +++++ +  +  + Q + K+++AY +VS MG++ +G+
Sbjct: 261 FLRFSLPMFPVASIFFTPFIFTLSLVAIIYASLTTLRQIDLKKIIAYSSVSHMGFVTIGI 320

Query: 298 STGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYL-GSRNILLIVSIAILS 353
            + N+    G+ L  L+H +    LFL +G + D  K + +KY  G   ++ +  +  L 
Sbjct: 321 FSLNIQGIEGSILLMLSHGLVSSALFLCIGVLYDRYKTRVIKYYSGLIQVMPLFGVFFLF 380

Query: 354 LAISGLGITIGGVAKSYLATTEKAIIYAVSF---GTAFSFSKLNYYLWKGYGNEPTNFSI 410
              + LG        S++    + ++   SF    T   F+ L       Y     N  I
Sbjct: 381 FTFANLGFP---GTSSFIG---EVLVLLSSFQINKTLTLFASLGMIFGAAYSIWLFNRII 434

Query: 411 LPSLTLGVLTVLVGIELGGKLSKYDLLIPLAFLTFY 446
             SL LG  +    I       ++ +LIPLA L  +
Sbjct: 435 FGSLKLGYFSSFQDI----SRREFWILIPLAILILW 466


>gb|AAK41287.1| NADH-Ubiquinone/plastoquinone related [Sulfolobus solfataricus]
           Length = 440
           
 Score =  118 bits (293), Expect = 1e-25
 Identities = 99/374 (26%), Positives = 174/374 (46%), Gaps = 31/374 (8%)

Query: 84  FLIAEFLVFGASSLYLVKRVTNWKELS------LLLLMHSGLIGAFISKDYFNFYVFMEL 137
           FL+    ++  S+LY +  +   K +S      LL    S ++   I  +Y   +V +EL
Sbjct: 63  FLLVIASIYLLSTLYSMNYIKPSKIVSERLYYILLNSFASSMLFTVIMNNYGLMWVGVEL 122

Query: 138 SAVSSYALIASQ----DREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVE---LASEV 190
           + V+S  LI ++      EA ++Y+++      + + ++  IY+    L V       E 
Sbjct: 123 TTVTSALLIIAEASETSLEATWRYIIIVSAGVTLALFSIIFIYYNYHTLTVTEILTKPEN 182

Query: 191 GLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSN 250
            +     + LA I    KAG+FP++ WLPDAHS A + +S++ SG+ + A  Y + ++  
Sbjct: 183 NIITKLAVALALIGFGTKAGVFPMYTWLPDAHSEAPSPISALFSGVLLPAATYVVYMVYQ 242

Query: 251 LGDLS-FLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYS 309
           +  L+     F  LS+    I+   Q++ KR+ AY T+  M   LLGL+ G   GA +  
Sbjct: 243 VNPLTNIFVIFTTLSIITASIILTYQWHIKRMFAYSTIENMNLALLGLTIGQPLGAIILL 302

Query: 310 LAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNI---LLIVSIAILSLAISGLGITIGGV 366
           LAHA  K G F   G ++     K ++ +G  +    L  VS+ + SLA++G       +
Sbjct: 303 LAHAFGKAGAFYSSGIVLKVLGEKRIENIGGLHTKLKLTSVSLLLSSLAVTGTPPFATFI 362

Query: 367 AKSYLATTEKAIIYAVSF-----GTAFSFSKLNYYLWK--------GYGNEPTNFSILPS 413
            + ++  T     Y + F       A +F  +NY + K            EP   + + S
Sbjct: 363 GEFFILQTLIQKGYIIEFILIVISLATAFISINYNVTKMIFTQRELTVSEEPKLITFI-S 421

Query: 414 LTLGVLTVLVGIEL 427
           L   ++ +++GI L
Sbjct: 422 LVSSIIPLVLGILL 435


>pir||D64463 conserved hypothetical protein MJ1309 - Methanococcus jannaschii
           >gi|1591948|gb|AAB99316.1| (U67571) carbon monoxide
           dehydrogenase, hydrogenase anchor subunit CooM (cooM)
           [Methanococcus jannaschii]
           Length = 481
           
 Score =  117 bits (291), Expect = 2e-25
 Identities = 124/473 (26%), Positives = 218/473 (45%), Gaps = 72/473 (15%)

Query: 5   IMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRG-GV 63
           +M++ P+I ++++ +     + G  +A   +  T+   A+ ++  F+    +    G GV
Sbjct: 6   MMIVFPLIMAIIMNL-----LHGKEKAVKYI--TFITAAILIILPFISQYGYYYFGGHGV 58

Query: 64  VGGY---------PREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLL 114
           V G+         P +  I V L  ++S  LI            + +++ N   ++L L+
Sbjct: 59  VNGWVSGIAYLYNPAKQAIIVTLSLIASLVLITG----------MGEKLKNNMFVTLSLM 108

Query: 115 MHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFK----YLLLSMTASYVLIL 170
             + +    ++ D FN YVF E+ ++    L+     E A+K    Y+++   A+ +++L
Sbjct: 109 GFASIAAIVLADDIFNLYVFFEIVSIVQAGLVFLSGTEEAYKAGLRYMIMGNVAAALMLL 168

Query: 171 ALGMIYFQTGYLNVELASEVGLRDDTP----LRLAAISLILKAGIFPLHVWLPDAHSNAK 226
            +  +   TG LN+       L D+      L L  + L   AG+ P H    D ++ +K
Sbjct: 169 GIAFLLASTGTLNITDMKHYLLVDNPMIYGGLLLLIVGLAYGAGLPPFHNVKADLYARSK 228

Query: 227 TYVSSILSGIAVKAPIYGL--ILLSNLGDLSF-------LKPFAILSMAFGVIMAILQFN 277
            ++S++L   + K  + GL  I+L     L +       L    +L+M FGV+MA+LQ +
Sbjct: 229 GFISAMLQTYS-KFVLVGLMIIILKLFNGLDYFASAHAVLIALGVLAMVFGVVMALLQSD 287

Query: 278 AKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLFLGVGAIIDARKRKD 334
            K+LLAYH +SQ GY+  GL+ G   G      +++ H ++K  LFLG   I+  ++  +
Sbjct: 288 YKKLLAYHAISQGGYVATGLALGTPLGIVAGIFHAINHVIYKSALFLG-AYIVSCKRGSN 346

Query: 335 LKYLGSRNILLIVSIAIL----SLAISGLGITIGGVAKSYLATT-------EKAII-YAV 382
           L  LG   + L+ S+A +     LAISG+    G  +K  LA         E AII   V
Sbjct: 347 LHKLGGL-LPLMPSVAFMVLCAKLAISGIPPFNGFQSKWMLAQAAMQVNMPEIAIIMIIV 405

Query: 383 SFGTAFSFSKLNYYLW---------KGYGN-EPTNFSILPSLTLGVLTVLVGI 425
           S GT  S  K  Y ++         K Y N E    ++     L  L +++G+
Sbjct: 406 SIGTFVSMMKAFYLIYLKPVDEETLKEYQNKEVPKLAVFSLFVLTALCIIIGL 458


>emb|CAC08260.1| (AL392146) NADH dehydrogenase subunit [Streptomyces coelicolor]
           Length = 534
           
 Score =  117 bits (290), Expect = 3e-25
 Identities = 91/311 (29%), Positives = 155/311 (49%), Gaps = 38/311 (12%)

Query: 70  EIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKE------------LSLLLLMHS 117
           ++ I +G+D +S   L+   L+    +LY   +  + +             ++LLL++ S
Sbjct: 87  DVRIHLGIDGISLPLLVLTALLTFLCALYSYLKQRHERLTPRAPGPSPKAFVALLLVLES 146

Query: 118 GLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILALG 173
           G +  F   D   F++  E+  +  Y LIA    E    AA+K++L ++  S V++L L 
Sbjct: 147 GTLATFAVLDLILFFLAFEMVLIPMYFLIARWGGEGRAGAAWKFILFTLLGSVVMLLGLL 206

Query: 174 MIYFQTGYLN-VELASEVGLRDDTPLRLAAI-----SLILKAGIFPLHVWLPDAHSNAKT 227
           +I    G  + V LA++ G    T +++ A+      L +K  ++PLH WLPDAH+ A T
Sbjct: 207 LIGITAGTFDMVALATDNGRSLTTSVQVIAVLAIGLGLAVKTPMWPLHSWLPDAHTAAPT 266

Query: 228 YVSSILSGIAVKAPIYGLI-LLSNLGDLSF------LKPFAILSMAFGVIMAI------L 274
             S +L+G+ +K   YG I +L  +    F      L  FA++ + +G +  +       
Sbjct: 267 VGSVLLAGVLLKMGTYGFIRILLPVAPEGFRIFAPYLAAFAVVGIIYGSLACLALARRGA 326

Query: 275 QFNAKRLLAYHTVSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAIIDARK 331
           + + KRL+AY +V  MG++LLG++T     V GA   ++AH +  G LF  VGA+ D   
Sbjct: 327 KGDLKRLIAYSSVGHMGFVLLGVATMTPTGVNGALFANIAHGLITGLLFFVVGALKDRTG 386

Query: 332 RKDLKYLGSRN 342
             DL  L   +
Sbjct: 387 TTDLDTLAEES 397


>emb|CAC14150.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
           [Sinorhizobium meliloti]
           Length = 491
           
 Score =  116 bits (289), Expect = 4e-25
 Identities = 88/309 (28%), Positives = 152/309 (48%), Gaps = 38/309 (12%)

Query: 75  VGLDWVSSTFLIAEFLVFGASSLYLVKRVTNW-------KELSL-LLLMHSGLIGAFISK 126
           +G+D +S+ FL      F  + L L+  + +W       KE  + LL+M + ++G F + 
Sbjct: 76  LGVDGISALFL------FLTALLSLISVLASWVAIDRKVKEFMVSLLVMQALMLGVFCAL 129

Query: 127 DYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILALGMIYFQTGYL 182
           D F FYVF E   +  Y +I     E    AAFK+ L ++  S + ++ + ++YFQ G  
Sbjct: 130 DLFLFYVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFLYTLAGSILFLIGVIVLYFQGGE- 188

Query: 183 NVELASEVGLRDDTPLRLAA-------ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSG 235
             ++ +  G   D P  + +       ++  +K  + P+H WLPDAH  A T  S IL+G
Sbjct: 189 TFDILALTG--QDLPFGVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQAPTAGSIILAG 246

Query: 236 IAVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVS 288
           + +K   YG +  S       +L   + +   + L++ +G ++A+ Q + K+L+AY ++S
Sbjct: 247 VLLKMGAYGFLRFSLPMLPEASLYYSTLMLALSALAIVYGGLLALAQDDLKKLVAYSSIS 306

Query: 289 QMGYILLG---LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
            MG++ LG   L+   + G+ L    H +  G LFL VG I +    + +   G      
Sbjct: 307 HMGFVTLGIFALNLRGLEGSILQMFNHGITTGALFLFVGLIYERTHTRSIANYGGLMKAA 366

Query: 346 IVSIAILSL 354
            V  A L+L
Sbjct: 367 PVYTAFLAL 375


>pir||H82822 NADH-ubiquinone oxidoreductase, NQO14 subunit XF0318 [imported] -
           Xylella fastidiosa (strain 9a5c)
           >gi|9105141|gb|AAF83129.1|AE003884_14 (AE003884)
           NADH-ubiquinone oxidoreductase, NQO14 subunit [Xylella
           fastidiosa]
           Length = 485
           
 Score =  115 bits (286), Expect = 9e-25
 Identities = 114/386 (29%), Positives = 185/386 (47%), Gaps = 42/386 (10%)

Query: 46  LLGVFLPMLLFPLSRGGVV--GGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRV 103
           +LGV L ML+  +   G    G + R+   +V    V    + A  LV+G S  YL +R 
Sbjct: 51  ILGVVLSMLVAGVGGQGAAFHGMFVRDSAADVMK--VVIVLVSALSLVYGWS--YLRERN 106

Query: 104 TNWKELSLLLLMHS-GLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKY 157
               E+ +L+L  + G++    +      Y+ +EL A+ SYAL+A         EAA KY
Sbjct: 107 LFQGEIPVLVLFATLGMMVLVSAGHLLMVYLGLELLALCSYALVAVNRDSKISTEAAMKY 166

Query: 158 LLLSMTASYVLILALGMIYFQTGYLNVELASEV--GLRDDTPLRLAAISLI----LKAGI 211
           ++L   AS +L+  + +IY  TG L++   S++  G  + T L    + LI     K G 
Sbjct: 167 IVLGSLASGLLLYGMSLIYGATGTLSLPGISDMIHGSSEKTLLLTGTVFLIAGVAFKLGA 226

Query: 212 FPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGL---ILLSNLGDLS-----FLKPFAIL 263
            P H+WLPD +  A T +   +S  A K   +G+   +L   +G LS          A  
Sbjct: 227 APFHMWLPDVYQGAPTPIVLFISS-APKLAAFGMAYRLLEVGVGPLSPQWHLIFGGLAAF 285

Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLF 320
           S+  G +MAI+Q N KR+LAY TVS +G++++G+S G ++G   A  Y L++A+     F
Sbjct: 286 SLVIGNLMAIVQTNLKRMLAYSTVSHVGFLMMGVSGGGIHGYSSAMFYVLSYAIMSTASF 345

Query: 321 LGVGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL-- 371
              GAII       +A    D K L +R+  +   +  +  +++GL   +G   K  +  
Sbjct: 346 ---GAIIALSRRGSEAENIDDFKGLSTRHPWMAALLLCVMASLAGLPPFLGFWTKLAVLG 402

Query: 372 ATTEKAIIYAVSFGTAFSFSKLNYYL 397
           A  +  +++    G   +     YYL
Sbjct: 403 AAVQGGMLWLAILGVICAVIGAYYYL 428


>pir||B72281 hypothetical protein TM1212 - Thermotoga maritima (strain MSB8)
           >gi|4981765|gb|AAD36287.1|AE001778_8 (AE001778) NADH
           dehydrogenase, putative [Thermotoga maritima]
           Length = 626
           
 Score =  115 bits (285), Expect = 1e-24
 Identities = 106/394 (26%), Positives = 182/394 (45%), Gaps = 55/394 (13%)

Query: 45  YLLGVFLPMLLFPLSRGGVVGGYPRE--IGIEVGLDW--VSSTFLIAEFLVFGASSLYLV 100
           +L G+F  + +F L     VG + +    G+ +  +W  VS  F     LV  +  L+  
Sbjct: 33  FLAGLFTILYVFTLK----VGTFEKLDLFGLNIQFEWTNVSFYFSFVSLLVIVSVMLFST 88

Query: 101 KRVTNWKELS----LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREA--- 153
           K +   K  +     LL++ +G +G F++ D    YVF E++ +SS  ++  + +EA   
Sbjct: 89  KWLETQKYRASYNMFLLMVTAGSLGVFMAADLITLYVFWEIAVLSSLLIVPMEKKEARKA 148

Query: 154 AFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPL--RLAAISL-----I 206
              Y ++S   +Y  +    + Y + G LN+   ++ G+ +DT +  ++A   L     I
Sbjct: 149 VVVYAVMSAVGTYAFLYGTFLAYQRYGTLNIHGIAQ-GMLNDTSIGFKMAVFLLLSAAGI 207

Query: 207 LKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIY-GLILLSNLGDLSFLKPFAI--- 262
            K+GIFPLH+WL + H  A    SS+LSG  +K   Y  L++LS +  L       +   
Sbjct: 208 AKSGIFPLHIWLRETHGLAPNAFSSVLSGQFIKLGNYIFLLVLSVIPSLKVFSEVTVYSG 267

Query: 263 -------------LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGAT 306
                        +S+  G +MAI Q + K L+AY +V+  GYIL+G+ T +     G  
Sbjct: 268 IPLPNYILIALGNVSIVIGTLMAIKQDDMKMLMAYSSVANGGYILIGIGTMDPLGFEGGM 327

Query: 307 LYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS-----RNILLIVSIAILSLAISGLGI 361
            +   HA+    +F+   A+I   K + +  +G          L+   +I+SLA  G+  
Sbjct: 328 FHIFNHAVASAVIFMAFAAVIYRTKTQKISEMGGLIHKMPVTFLVYLFSIISLA--GIPP 385

Query: 362 TIGGVAK--SYLATTEKAII---YAVSFGTAFSF 390
             G ++K   Y A   K +    +   FG+  SF
Sbjct: 386 MSGFISKWMIYQALVRKGMFITAFLAFFGSIGSF 419


>emb|CAB07908.1| (Z93932) unknown [Bacillus subtilis]
           Length = 480
           
 Score =  115 bits (284), Expect = 2e-24
 Identities = 90/338 (26%), Positives = 166/338 (48%), Gaps = 31/338 (9%)

Query: 64  VGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSL----LLLMHSGL 119
           +GG+    GI +  D  +S  ++   ++     LY  + V   +E S     +  + +G+
Sbjct: 61  LGGWKAPYGIVLAADQFASLLVLTTAIIGLLVGLYSFRSVGEKRERSFYYSGVQFLLAGV 120

Query: 120 IGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGM 174
            GAF++ D FN YVF EL  ++SY LI       Q RE + KY++ ++ +S + ++ +G 
Sbjct: 121 SGAFLTGDLFNMYVFFELLLIASYMLIVLGGTKIQLRE-SLKYIVFNIVSSALFVIGVGF 179

Query: 175 IYFQTGYLNV-ELASEVGLRDDTPLRLAAISLIL------KAGIFPLHVWLPDAHSNAKT 227
           +Y  TG LN+ +L+ ++     T L +  I ++L      K GIFPL+ WLP ++     
Sbjct: 180 LYAVTGTLNMADLSVKISESGQTGL-ITVIGVLLLLVFGMKGGIFPLYFWLPGSYYAPPA 238

Query: 228 YVSSILSGIAVKAPIYGL---ILLSNLGDLSFLKP----FAILSMAFGVIMAILQFNAKR 280
            +S++   +  K  +Y +     L  + D +F        A L++ FGVI ++   N  +
Sbjct: 239 AISALFGALLTKVGLYAITRVFTLIFIHDTAFTHQLMIWLAALTVIFGVIGSLAYSNVMK 298

Query: 281 LLAYHTVSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKY 337
           ++ Y+ ++ +G IL G++     ++ GA  Y +   + KG LF+  G +I       L  
Sbjct: 299 IVIYNIITAVGVILFGVAVHTPASIQGAIYYLIHDMLIKGALFMLAGTLIALTGTASLHK 358

Query: 338 LG---SRNILLIVSIAILSLAISGLGITIGGVAKSYLA 372
           +G    R  +L     I +++++G+    G V K  +A
Sbjct: 359 MGGLIKRYPVLGWMFFISAISLAGIPPLSGFVGKFKIA 396


>gb|AAF65740.1|AF228525_10 (AF228525) F420H2 dehydrogenase subunit FpoM [Methanosarcina mazei]
           Length = 495
           
 Score =  115 bits (284), Expect = 2e-24
 Identities = 93/342 (27%), Positives = 159/342 (46%), Gaps = 47/342 (13%)

Query: 71  IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKE--------LSLLLLMHSGLIGA 122
           +   VG+D VS   ++   +V     L+       WKE          L+L M + +IG 
Sbjct: 71  VNYSVGIDGVSMPLILLNAIVIPFMILF------TWKEEMESPNRFYGLILTMQAAVIGV 124

Query: 123 FISKDYFNFYVFMELSAVSSYALI----ASQDREAAFKYLLLSMTASYVLILALGMIYF- 177
           F++ D+  FY+F EL+ V  + ++     +    A++K+ + +  AS V++L +  +++ 
Sbjct: 125 FVALDFVVFYIFWELTLVPLFFIVNLWGGANRAHASYKFFIYTHVASLVMLLGIFGLFYT 184

Query: 178 ---QTGYLNVELAS--------EVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAK 226
              QTG    ++          E GL  D          + K   FP H WLPDA+S A 
Sbjct: 185 ALNQTGVPTFDIRELIAQFQFFEPGLMKDGIFLAILFGFLAKLPAFPFHSWLPDAYSEAP 244

Query: 227 TYVSSILSGIAVKAPIYGLI-----LLSNLGD----LSFLKPFAILSMAFGVIMAILQFN 277
           T  S +   I +K   YGL      +L N G     +  L     +S+ +G ++A+ Q +
Sbjct: 245 TAGSILF--ILLKIGGYGLFRISLPMLPNTGSPQLMIMILGLLGSVSILYGALLALRQKD 302

Query: 278 AKRLLAYHTVSQMGYILL---GLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKD 334
            KR++AY ++S MGY++L   GL T +V GA     +H +    +F+  GAI  A   + 
Sbjct: 303 LKRMIAYSSLSHMGYVILGSAGLVTLSVSGAMFQQFSHGLIMSIMFMSAGAIQTAAGTRI 362

Query: 335 LKYLG---SRNILLIVSIAILSLAISGLGITIGGVAKSYLAT 373
           +  LG    +  +L V++ +  +A  GL    G +A+  + T
Sbjct: 363 INELGGLAKKMPMLTVAMMVGFMASLGLPGLTGFIAEFLVLT 404


>gb|AAG19146.1| (AE005012) F420H2:quinone oxidoreductase chain M; NuoM
           [Halobacterium sp. NRC-1]
           Length = 519
           
 Score =  114 bits (283), Expect = 2e-24
 Identities = 92/362 (25%), Positives = 167/362 (45%), Gaps = 45/362 (12%)

Query: 68  PREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKE-----LSLLLLMHSGLIGA 122
           P  +   VG+D +S   ++   ++   ++L +    T   E      +L+LLM + L+G 
Sbjct: 73  PYTLNWHVGIDGISMPLVVLSTVL---TTLAITSAWTPIDERQSQFYALMLLMEASLLGV 129

Query: 123 FISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVLILALGMIYFQ 178
           F + D+F ++VF E   V  Y LI      + + AA K+ + +  AS ++ +    + F 
Sbjct: 130 FTALDFFVWFVFWEFVLVPMYFLIGIWGGPRRKYAAIKFFVYTNVASLLMFIGFMALVFG 189

Query: 179 TGYLNVEL------------ASEVGLRDDTPLRLAAISLIL----KAGIFPLHVWLPDAH 222
                +++             +  GL  +T   +A  ++ +    K    PLH WLPDAH
Sbjct: 190 LDVTTMDMPAIAQAIHAGQFGTTYGLGAETLKTVAFFAMFIGFAVKVPTVPLHTWLPDAH 249

Query: 223 SNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI-------LSMAFGVIMAILQ 275
             A T  S +L+G+ +K   Y L+  +        + +A+       LS+ +G ++A+ Q
Sbjct: 250 VQAPTPASVMLAGVLLKMGTYALLRFNFTMMPGIAQQYAVPIAALAVLSVIYGAMLALAQ 309

Query: 276 FNAKRLLAYHTVSQMGYILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIID-ARK 331
            + KR++AY +VS MGY++LGL   N Y   GAT   +AH +  G +F+ VG I + A  
Sbjct: 310 RDLKRIVAYSSVSSMGYVILGLVAYNYYGVGGATFQMVAHGLISGLMFMCVGVIYNTAHT 369

Query: 332 RKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYAVSFGTAFSFS 391
           R      G  + + + +   ++ A   +G+ +            +  I+   FG  F+ +
Sbjct: 370 RMVGDLSGIADKMPVTAAVFIAAAFGYMGLPL------MAGFAGELFIFLGGFGADFAHA 423

Query: 392 KL 393
           +L
Sbjct: 424 QL 425


>pir||G70008 NADH dehydrogenase (ubiquinone) homolog yufD - Bacillus subtilis
           >gi|2635659|emb|CAB15152.1| (Z99120) similar to NADH
           dehydrogenase (ubiquinone) [Bacillus subtilis]
           Length = 480
           
 Score =  114 bits (283), Expect = 2e-24
 Identities = 90/338 (26%), Positives = 166/338 (48%), Gaps = 31/338 (9%)

Query: 64  VGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSL----LLLMHSGL 119
           +GG+    GI +  D  +S  ++   ++     LY  + V   +E S     +  + +G+
Sbjct: 61  LGGWKAPYGIVLAADQFASLLVLTTAIIGLLVGLYSFRSVGEKRERSFYYSGVQFLLAGV 120

Query: 120 IGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGM 174
            GAF++ D FN YVF EL  ++SY LI       Q RE + KY++ ++ +S + ++ +G 
Sbjct: 121 SGAFLTGDLFNMYVFFELLLIASYMLIVLGGTKIQLRE-SLKYIVFNIVSSALFVIGVGF 179

Query: 175 IYFQTGYLNV-ELASEVGLRDDTPLRLAAISLIL------KAGIFPLHVWLPDAHSNAKT 227
           +Y  TG LN+ +L+ ++     T L +  I ++L      K GIFPL+ WLP ++     
Sbjct: 180 LYAVTGTLNMADLSVKISESGQTGL-ITVIGVLLLLVFGMKGGIFPLYFWLPGSYYAPPA 238

Query: 228 YVSSILSGIAVKAPIYGL---ILLSNLGDLSFLKP----FAILSMAFGVIMAILQFNAKR 280
            +S++   +  K  +Y +     L  + D +F        A L++ FGVI ++   N  +
Sbjct: 239 AISALFGALLTKVGLYAITRVFTLIFIHDTAFTHQLMIWLAALTVIFGVIGSLAYSNVMK 298

Query: 281 LLAYHTVSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKY 337
           ++ Y+ ++ +G IL G++     ++ GA  Y +   + KG LF+  G +I       L  
Sbjct: 299 IVIYNIITAVGVILFGVAVHTPASIQGAIYYLIHDMLVKGALFMLAGTLIALTGTASLHK 358

Query: 338 LG---SRNILLIVSIAILSLAISGLGITIGGVAKSYLA 372
           +G    R  +L     I +++++G+    G V K  +A
Sbjct: 359 MGGLIKRYPVLGWMFFISAISLAGIPPLSGFVGKFKIA 396


>pir||G75060 hydrogenase-4 component B (EC 1.-.-.-) PAB1392 - Pyrococcus abyssi
           (strain Orsay) >gi|5458893|emb|CAB50380.1| (AJ248287)
           HYDROGENASE-4 COMPONENT B (EC 1.-.-.-) [Pyrococcus
           abyssi]
           Length = 647
           
 Score =  114 bits (283), Expect = 2e-24
 Identities = 106/405 (26%), Positives = 191/405 (46%), Gaps = 52/405 (12%)

Query: 71  IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNW--KELSLLLLMHSGLIGAF---IS 125
           +G+ V +D  S  F++   ++  ++SLY +  +     KE    +  ++ L+  F   I+
Sbjct: 55  LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114

Query: 126 KDYFNFYVFMELSAVSSYALIA--SQDREAAFKYLL-LSMTASYVLILALGMIYFQTGYL 182
            +   F  F EL  +SS+ LI    +D +   KY + + +  ++ L ++LG+ Y   G L
Sbjct: 115 SNLVWFVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSL 174

Query: 183 NVELASEV-GLRDDTPLRLAA---ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAV 238
           +      +  L     L L A   I+ + K+GI P H W+P  +  A + +SS+L+G   
Sbjct: 175 DAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAME 234

Query: 239 KAPIYGLILL--------SNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQM 290
           K  ++GLI +         ++G L  L     +++  G + A+ + +AK+LLAYH++ QM
Sbjct: 235 KIAVFGLIRIMYTALPTPKSIGYLVAL--LGAVTLTVGTLYALRESDAKKLLAYHSIGQM 292

Query: 291 GYILLGLSTG----------NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLG- 339
           GYI LG+  G           ++    ++L H++FKG LFL  G++  A    +L  LG 
Sbjct: 293 GYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGG 352

Query: 340 --SRNILLIVSIAILSLAISGLGITIGGVAKSYLATT-EKAIIYAVSFG-------TAFS 389
              R     ++  + SLAISG+    G ++K  + T    +    +SFG       +A +
Sbjct: 353 LAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVT 412

Query: 390 FSKLNYYLWKGYGNEPTNF---------SILPSLTLGVLTVLVGI 425
            +    +    +G E   +          ++P L L  L +++GI
Sbjct: 413 LASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGI 457


>gi|11466578 NADH dehydrogenase subunit 4 [Rhodomonas salina]
           >gi|10444165|gb|AAG17739.1|AF288090_15 (AF288090) NADH
           dehydrogenase subunit 4 [Rhodomonas salina]
           Length = 483
           
 Score =  114 bits (283), Expect = 2e-24
 Identities = 80/307 (26%), Positives = 156/307 (50%), Gaps = 21/307 (6%)

Query: 75  VGLDWVSSTF-LIAEFLVFGASSLYLVKRVTNWKELSL-LLLMHSGLIGAFISKDYFNFY 132
           +G+D +S  F L+  FL+     +    +  N KE  +  LL++  LI  F   D   FY
Sbjct: 78  IGVDGISIFFILLTTFLIPICLLVEWFSKKKNIKEYYVCFLLINIFLIVVFSVLDILIFY 137

Query: 133 VFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELA 187
           +F E   +  + +I      ++  +AA+++ L ++  S +++L++ +I+F+ G  + ++ 
Sbjct: 138 IFFESILIPMFLVIGIFGSKTRKIKAAYQFFLYTLLGSVLMLLSIFLIFFEAGSTDFQIL 197

Query: 188 SEVGLRDDTPLRLAA---ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYG 244
             V   +   L L     IS  +K  +FPLH+WLP+AH  A T  S IL+G+ +K   YG
Sbjct: 198 LSVKFSEKKQLLLWLAFFISFAIKIPMFPLHIWLPEAHVEAPTAGSVILAGVLLKMGAYG 257

Query: 245 LILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGL 297
            +  S       ++     +   ++L++ +  +  + Q + K+++AY +V+ MG + +G+
Sbjct: 258 FVRFSLTFFPIASVFFCPLIFVLSLLAVLYTSLTTLRQVDLKKIIAYSSVAHMGLVTIGI 317

Query: 298 STGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS-RNILLIVSIAILS 353
            + N+Y   G+ L  ++H      LFL VG + +    + +KY G    I+ + +   L 
Sbjct: 318 FSFNLYGLEGSFLMMISHGFVSSALFLLVGMLYEKHHSRLIKYYGGIAQIMPLYTFFFLF 377

Query: 354 LAISGLG 360
            +++ LG
Sbjct: 378 FSVANLG 384


>sp|Q9ZCG0|NUOM_RICPR NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
           M) >gi|7432362|pir||C71640 NADH dehydrogenase
           (ubiquinone) (EC 1.6.5.3) I chain M RP793 - Rickettsia
           prowazekii >gi|3861320|emb|CAA15219.1| (AJ235273) NADH
           DEHYDROGENASE I CHAIN M (nuoM) [Rickettsia prowazekii]
           Length = 491
           
 Score =  114 bits (282), Expect = 3e-24
 Identities = 99/347 (28%), Positives = 171/347 (48%), Gaps = 34/347 (9%)

Query: 70  EIGIE--VGLDWVSSTFLIAEF---LVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFI 124
           +IG+E  VG+D ++  F++      L+    SL+ +K+    + L   LLM S  IGAF 
Sbjct: 75  KIGLEFHVGVDGIAIFFVVLTSFLTLICIIGSLFTIKKYIK-EYLVCFLLMESLCIGAFT 133

Query: 125 SKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILALGMIYFQTG 180
           S +   FY+F E   V  Y +I     +    AA K+ L +   S   +LAL  IY  + 
Sbjct: 134 SINLLLFYLFFEAILVPMYIIIGVWGGDNRIYAALKFFLYTFFGSVFFLLAL--IYIYSK 191

Query: 181 YLNVELASEVGLRDDTPLRLAAI-------SLILKAGIFPLHVWLPDAHSNAKTYVSSIL 233
             + +L + + L  + PL    I       +  +K  + P H WLPDAH  A T  S IL
Sbjct: 192 IHSFDLTNILELIGNIPLFAQKILWWAIFIAFAIKTPMIPFHTWLPDAHVQAPTTGSVIL 251

Query: 234 SGIAVKAPIYGL--ILLSNLGDLS-----FLKPFAILSMAFGVIMAILQFNAKRLLAYHT 286
           +GI +K   YG   +LL    + S     ++   +++++ +  ++A+ Q + K+++AY +
Sbjct: 252 AGILLKLGGYGFLRVLLPLFPNASQEFAIYVIYLSVIAIIYASLVALAQKDIKQMIAYSS 311

Query: 287 VSQMGYILLGL---STGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDL-KYLGSRN 342
           ++ MGY+ +G+   +   + GA    L+H +    LFL VG + +    K++ KY G  N
Sbjct: 312 IAHMGYVTIGIFSFTEIGISGAIFQMLSHGIISSSLFLIVGTLYERLHTKEIAKYGGVAN 371

Query: 343 ILLIVSIAILSLAISGLGI-TIGGVAKSYLATTEKAIIYAVSFGTAF 388
            + I++   +   +S +G+ +  G    +L+      IY V+  TAF
Sbjct: 372 KMPILATFFMIAMLSSIGLPSTSGFIGEFLSLLG---IYKVNVVTAF 415


>emb|CAC14149.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
           [Sinorhizobium meliloti]
           Length = 586
           
 Score =  113 bits (281), Expect = 3e-24
 Identities = 88/293 (30%), Positives = 141/293 (48%), Gaps = 24/293 (8%)

Query: 127 DYFNFYVFME-LSAVSSYALIASQDREA---AFKYLLLSMTASYVLILALGMIYFQTGYL 182
           DY   Y+F E ++  S+Y + A   R+A   AF+YL++ +T   VL   LG I       
Sbjct: 113 DYLTLYLFWEGMAFASAYLVFAQGGRQAIRAAFRYLMVHVTGGVVL---LGGILLHGAAA 169

Query: 183 NVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPI 242
              L   V         L     +L A + PL+ WL DA+  A    +  +S    K  +
Sbjct: 170 GSLLFGPVEGPLGAGAYLILAGFLLNAAVPPLNAWLTDAYPEATVTGAVFMSAFTTKTAV 229

Query: 243 YGLILLSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGN- 301
           Y  +L      +  L     +   +GVI A+L+ + +RLLAYH VSQ+GY++ G+  G  
Sbjct: 230 Y--VLARAFPGIELLVWLGTVMALYGVIYAVLENDCRRLLAYHIVSQVGYMVAGIGIGTE 287

Query: 302 --VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAIL---SLAI 356
             V GAT ++ AH ++KG LF+G GA+I    R+ L  LG     + +++A+    + AI
Sbjct: 288 LAVNGATSHAFAHILYKGLLFMGAGAVIYVTGRRKLTELGGLYKAMPLTVALYMIGAFAI 347

Query: 357 SGLGITIGGVAKSYLATT-----EKAIIYAVSFGTAFSF----SKLNYYLWKG 400
           S      G V+KS +           ++ A++  ++ +F     KL YY++ G
Sbjct: 348 SAFPFFSGFVSKSMVVAAAGQDHRALVMLALTMASSGTFLHTGLKLPYYMFFG 400


>gi|11466666 NADH dehydrogenase subunit 4 [Malawimonas jakobiformis]
           >gi|10178704|gb|AAG13716.1|AF295546_42 (AF295546) NADH
           dehydrogenase subunit 4 [Malawimonas jakobiformis]
           Length = 486
           
 Score =  113 bits (281), Expect = 3e-24
 Identities = 81/308 (26%), Positives = 154/308 (49%), Gaps = 21/308 (6%)

Query: 75  VGLDWVSSTFLIAEFLVFGASSLYLVKRVTNW--KELSLLLLMHSGLIGAFISKDYFNFY 132
           +G+D +S  FLI    +     L     + ++  + + L LL+ + ++  F   D   FY
Sbjct: 77  IGIDGISIFFLILTTFLVPICILASWNSIRHYVREYMILFLLLETLMMNVFCVIDIILFY 136

Query: 133 VFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGYLN--VE 185
           +F E   +  + +I    +++R+  AAF++ L ++  S  ++ A+ +IYF TG  +  V 
Sbjct: 137 IFFESVLIPMFLIIGIWGARERKIHAAFQFFLYTLLGSLFMLFAILIIYFNTGTTDFKVL 196

Query: 186 LASEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYG 244
           L +E        L LA  IS  +K  + P+H+WLP+AH  A T  S IL+GI +K   YG
Sbjct: 197 LVTEFSRNRQLLLWLAFFISFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYG 256

Query: 245 LILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGL 297
           L+  S       N+  +  +    ++++ +  +  + Q + K+++AY +V+ M +++LGL
Sbjct: 257 LLRFSLTLFPDANIYYIPLVYTMGVIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVILGL 316

Query: 298 STGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL-IVSIAILS 353
            + N   + G+ L  L+H      LFL +G + D    + ++Y     + + I S   L 
Sbjct: 317 FSLNIEAIEGSILLMLSHGFVSSALFLCIGVLYDRHHTRIVRYYSGITLTMPIFSTLFLF 376

Query: 354 LAISGLGI 361
             ++ + +
Sbjct: 377 FTLANISL 384


>pir||S75961 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4.1b -
           Synechocystis sp. (strain PCC 6803)
           >gi|1001321|dbj|BAA10808.1| (D64006) NADH dehydrogenase
           subunit 4 [Synechocystis sp.]
           Length = 507
           
 Score =  113 bits (280), Expect = 5e-24
 Identities = 84/286 (29%), Positives = 146/286 (50%), Gaps = 29/286 (10%)

Query: 110 SLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTAS 165
           +LLLL+  G+ GAF+++D   F++F EL  +  Y LIA    +    AA K+LL +  + 
Sbjct: 111 ALLLLLSGGVAGAFLAQDLLLFFLFFELEIIPLYFLIAIWGGQRRGYAAMKFLLYTALSG 170

Query: 166 YVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLI-------LKAGIFPLHVWL 218
           ++++++    ++ T   N +      L D  P++   + L+       +K  IFP H WL
Sbjct: 171 FLVLVSFLGWFWLTKAPNFDY--NPSLADALPVKTQMLLLLPLLLGLGIKIPIFPFHTWL 228

Query: 219 PDAHSNAKTYVSSILSGIAVKAPIYGLI-------LLSNLGDLSFLKPFAILSMAFGVIM 271
           PDAH  A T VS +L+G+ +K   YGL+       L + +    +L   A +S  +G   
Sbjct: 229 PDAHVEASTPVSVLLAGVLLKLGTYGLLRFGLGLYLEAWVEFAPYLATLAAISALYGASC 288

Query: 272 AILQFNAKRLLAYHTVSQMGYILLGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIID 328
           AI Q + K+++AY +++ MGYILL  +     +V  A+   ++H +    LFL VG +  
Sbjct: 289 AIAQKDMKKVVAYSSIAHMGYILLAAAAATRLSVTAASAQMVSHGIISALLFLLVGVVYK 348

Query: 329 ARKRKDLKYL-----GSRNILLIVSIAILS-LAISGLGITIGGVAK 368
               +D+  L       R + +  S+ IL  +A +G+   +G +A+
Sbjct: 349 KTGSRDVDKLQGLLTPERGLPITGSLMILGVMASAGIPGMVGFIAE 394


>gi|11466299 NADH dehydrogenase subunit 4 [Cafeteria roenbergensis]
           >gi|6180081|gb|AAF05778.1|AF193903_1 (AF193903) NADH
           dehydrogenase subunit 4 [Cafeteria roenbergensis]
           Length = 453
           
 Score =  112 bits (278), Expect = 8e-24
 Identities = 88/305 (28%), Positives = 142/305 (45%), Gaps = 22/305 (7%)

Query: 73  IEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTN-WKELSLLLLMHSGLIGAFISKDYFNF 131
           + +G+D +S  F+I   L+   S LY        +  L  LLL+  G+ GAF+  D   F
Sbjct: 44  LPIGVDSLSIWFVILNHLIIYLSLLYTFSTQNKQYGFLYCLLLLQWGIGGAFMVFDLLGF 103

Query: 132 YVFMELSAVSSYALI---ASQDREAAFKYLLLSMTASYVLILALGMIY----FQTGYLNV 184
           ++F EL+ +  Y LI    S++R+    YL+   T    + +   + Y    F T    V
Sbjct: 104 FIFFELTLIPIYLLILIYGSRERKIRASYLISLYTLFGSIFMFFNIFYCFAKFGTTNFFV 163

Query: 185 ELASEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIY 243
            +  +    D   L +   I+   K  + P H+WLP+AH  A T  S IL+ + +K   Y
Sbjct: 164 LMTLDFAPEDAKFLWITFFIAFAAKIPMIPFHIWLPEAHVEAPTIGSVILAALLLKLGTY 223

Query: 244 GLILL-------SNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLG 296
           G++         + L     +  FA++S+ F  + AI Q + K+++AY ++  M  +LLG
Sbjct: 224 GILRFLLHLFPEATLYFSPLINVFALISIVFTSMTAIRQIDLKKIIAYSSIGHMNVVLLG 283

Query: 297 L---STGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNI---LLIVSIA 350
           +   S  ++ G     L+H +  G LF  VGA     K + L+Y G   I   LL     
Sbjct: 284 MLVPSVESLEGTIFQMLSHGIIAGALFFIVGAFYQRYKVRSLEYFGGFMITAPLLATFFL 343

Query: 351 ILSLA 355
           I S+A
Sbjct: 344 IFSMA 348


>pir||A48643 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - Escherichia
           coli >gi|304921|gb|AAA53583.1| (L19568) NADH ubiquinone
           oxidoreductase subunit [Escherichia coli]
           >gi|416008|emb|CAA48372.1| (X68301) NADH dehydrogenase
           I, subunit nuoM [Escherichia coli]
           Length = 509
           
 Score =  111 bits (276), Expect = 1e-23
 Identities = 119/435 (27%), Positives = 192/435 (43%), Gaps = 69/435 (15%)

Query: 15  LLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGI- 73
           +LI   G F    T R   ++P      AL  +G+ L + L    +GG      +  GI 
Sbjct: 7   ILIPFIGGFLCWQTERFGVKVPRWI---ALITMGLTLALSLQLWLQGGY--SLTQSAGIP 61

Query: 74  ----EVGLDWVSSTFLIAEFLVFGASSLYLVKR--------VTNWKELSL--------LL 113
               E  + W+    +     + G S L +V          + +WKE+          L+
Sbjct: 62  QWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLM 121

Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREA---------AFKYLLLSMTA 164
            +  G+IG F++ D F F+ F E+  V  Y LIA    +A         A K+ + +  +
Sbjct: 122 WILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQAS 181

Query: 165 SYVLILALGMIYF----QTGY--------LNVELASEVGLRDDTPLRLAA-ISLILKAGI 211
             V+++A+  + F     TG         LN  ++S V    +  L L   I+  +K  +
Sbjct: 182 GLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGV----EYLLMLGFFIAFAVKMPV 237

Query: 212 FPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFGVI- 270
            PLH WLPDAHS A T  S  L+GI +K   YGL+  S     +    FA ++M  GVI 
Sbjct: 238 VPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIG 297

Query: 271 ------MAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFL 321
                 MA  Q + KRL+AY +VS MG++L+ + TG+     GA +  +AH +   GLF+
Sbjct: 298 IFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFI 357

Query: 322 GVGAIIDARKRKDLKYLGSR------NILLIVSIAILSLAISGLGITIGGVAKSYLATTE 375
             G + +    +D++ +G           L +  A+ +L + G G  +G     + +   
Sbjct: 358 LCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQV 417

Query: 376 KAIIYAVS-FGTAFS 389
             +I  +S FG  F+
Sbjct: 418 VPVITVISTFGLVFA 432


>pir||T51314 probable CO-induced hydrogenase complex chain CooM [imported] -
           Rhodospirillum rubrum >gi|1515466|gb|AAC45116.1|
           (U65510) CooM [Rhodospirillum rubrum]
           Length = 1265
           
 Score =  111 bits (276), Expect = 1e-23
 Identities = 91/292 (31%), Positives = 136/292 (46%), Gaps = 33/292 (11%)

Query: 112 LLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDR----EAAFKYLLLSMTASYV 167
           L LM   LIG   +    NFY+F EL    SY L+  +      +A  KY L+  + +YV
Sbjct: 314 LFLMIGSLIGVATTNHLGNFYLFWELMTWMSYLLVIHEQTAKALKAGMKYFLICASGAYV 373

Query: 168 LILALGMIYFQTGYLNV-ELASEVGLRDDT----PLRLAAISLILKAGIFPLHVWLPDAH 222
           +   + +++ Q G   + E+A  +G          L    I  + KAG+FPL+ WLP+AH
Sbjct: 374 MHFGILVLHAQLGTFEISEIAPCIGTLSPALAGVVLATFLIGFMAKAGLFPLYSWLPEAH 433

Query: 223 SNAKTYVSSILSGIAVKAPIYGLI-LLSNLGDLSFLKPFAI----------------LSM 265
             A + +S  +SGI  KA I G++ LL  +  +  L  F +                +++
Sbjct: 434 PVAPSSISGPMSGILTKAGILGMVKLLFGIFGVGALGQFGLFAGLSLPGAVLVALGGITL 493

Query: 266 AFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLG 322
             G + A  Q + KRLLAY T++Q+G I + L  G    + G   +   HA+ K  LF  
Sbjct: 494 LLGEVQAYRQTDIKRLLAYSTLAQIGEITMVLGVGTSLALAGGLFHVTNHAVMKTMLFFA 553

Query: 323 VGAII---DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL 371
           VGA+I     R   DLK LG       + + I  LAI G+    GG    +L
Sbjct: 554 VGALILRSAGRSLDDLKGLGKVMPFTGLCLGIGLLAIMGVP-PFGGFVSKFL 604


 Score = 95.6 bits (234), Expect = 1e-18
 Identities = 82/305 (26%), Positives = 141/305 (45%), Gaps = 40/305 (13%)

Query: 113  LLMHSGLIGAFISKDYFNFYVFME-LSAVSSYALIASQDREAAF----KYLLLSMTASYV 167
            ++M  GL+G   S D FNF+ F E +S+ + Y +I  ++ + +     KY + +   +  
Sbjct: 793  VMMIGGLLGVTASDDLFNFFAFWEVMSSWTLYLVIIHEETKDSLDEGTKYFIFNFVGASF 852

Query: 168  LILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAIS-------LILKAGIFPLHVWLPD 220
            L L + ++  + G   + L  +  L    P+   A+S       L++KA   PL +    
Sbjct: 853  LFLGVAILAAKAGTFEMALLPQAAL--SMPVGWLAVSAGLILAGLLMKAAQLPLRIDYQM 910

Query: 221  AHSNAKTYVSSILSGIAVKAPIYGLILL-------------SNLG-----DLSFLKPFAI 262
              + A T VS  +S + +K   YG++ +             + LG      L  ++  A 
Sbjct: 911  HPAPAPTPVSGYISAVLLKVGPYGVLKIMVALGAGGGLARIAGLGAWMPDPLVVVQVIAA 970

Query: 263  LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGL 319
            L++ +   MA++Q   KRLL Y TVSQ+GY+LLGLS G+   V G  ++ + H M K  L
Sbjct: 971  LTVLYAGAMAVVQNGVKRLLIYSTVSQLGYVLLGLSLGSALGVAGGLMHFVNHMMLKDIL 1030

Query: 320  FLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAII 379
            FL  G I+       L  LG     + ++  +   A    G+++ G+   +     K +I
Sbjct: 1031 FLAAGCILAQAHVHSLDDLGGLGRKMPITFGLFLFA----GLSLSGI-PPFNGFASKWLI 1085

Query: 380  YAVSF 384
            Y  +F
Sbjct: 1086 YQGAF 1090


>sp|P31978|NUOM_ECOLI NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
           13) (NUO13) >gi|7432335|pir||C64999 NADH dehydrogenase
           (ubiquinone) (EC 1.6.5.3) chain 4 - Escherichia coli
           >gi|1788613|gb|AAC75337.1| (AE000317) NADH dehydrogenase
           I chain M [Escherichia coli K12]
           >gi|1799637|dbj|BAA16105.1| (D90859) NADH dehydrogenase
           (ubiquinone) (EC 1.6.5.3) chain 4 [Escherichia coli]
           Length = 509
           
 Score =  111 bits (276), Expect = 1e-23
 Identities = 119/435 (27%), Positives = 192/435 (43%), Gaps = 69/435 (15%)

Query: 15  LLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGI- 73
           +LI   G F    T R   ++P      AL  +G+ L + L    +GG      +  GI 
Sbjct: 7   ILIPFIGGFLCWQTERFGVKVPRWI---ALITMGLTLALSLQLWLQGGY--SLTQSAGIP 61

Query: 74  ----EVGLDWVSSTFLIAEFLVFGASSLYLVKR--------VTNWKELSL--------LL 113
               E  + W+    +     + G S L +V          + +WKE+          L+
Sbjct: 62  QWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLM 121

Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREA---------AFKYLLLSMTA 164
            +  G+IG F++ D F F+ F E+  V  Y LIA    +A         A K+ + +  +
Sbjct: 122 WILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQAS 181

Query: 165 SYVLILALGMIYF----QTGY--------LNVELASEVGLRDDTPLRLAA-ISLILKAGI 211
             V+++A+  + F     TG         LN  ++S V    +  L L   I+  +K  +
Sbjct: 182 GLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGV----EYLLMLGFFIAFAVKMPV 237

Query: 212 FPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFGVI- 270
            PLH WLPDAHS A T  S  L+GI +K   YGL+  S     +    FA ++M  GVI 
Sbjct: 238 VPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIG 297

Query: 271 ------MAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFL 321
                 MA  Q + KRL+AY +VS MG++L+ + TG+     GA +  +AH +   GLF+
Sbjct: 298 IFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFI 357

Query: 322 GVGAIIDARKRKDLKYLGSR------NILLIVSIAILSLAISGLGITIGGVAKSYLATTE 375
             G + +    +D++ +G           L +  A+ +L + G G  +G     + +   
Sbjct: 358 LCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQV 417

Query: 376 KAIIYAVS-FGTAFS 389
             +I  +S FG  F+
Sbjct: 418 VPVITVISTFGLVFA 432


>pir||H64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO13 -
           Helicobacter pylori (strain 26695)
           >gi|2314437|gb|AAD08316.1| (AE000631) NADH-ubiquinone
           oxidoreductase, NQO13 subunit (NQO13) [Helicobacter
           pylori 26695]
           Length = 512
           
 Score =  111 bits (275), Expect = 2e-23
 Identities = 112/401 (27%), Positives = 183/401 (44%), Gaps = 45/401 (11%)

Query: 67  YPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSG-LIGAFIS 125
           Y   +   VG+D ++   L+   +V   S +Y+ +R    K+ ++ LL+  G L+G F S
Sbjct: 70  YQIGVNYHVGVDGIALFLLLLNAIVVLLSVIYVKERR---KDFAICLLLLEGILMGVFSS 126

Query: 126 KDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILALGMIYFQTGY 181
            +   FY F E+S +    LI    R     +  K+ L +  AS  L + LG++Y    Y
Sbjct: 127 LNMIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLAS--LCMLLGILYIGYDY 184

Query: 182 LNVELASEVGLRDDTPLRLAA-----------ISLILKAGIFPLHVWLPDAHSNAKTYVS 230
            N        + D   L  ++           I + +K  +FPLH WLP A+SNA T  S
Sbjct: 185 ANNYGMMSFDILDWYQLNFSSGVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSNAPTLGS 244

Query: 231 SILSGIAVKAPIYGLI--LLSNLGDLS--FLKPFAILSMA---FGVIMAILQFNAKRLLA 283
            +LS +  K   Y L+  LL    DLS  +L P AI ++    +G  +A  Q + K L+A
Sbjct: 245 VMLSALLSKMGTYALLRFLLPLFPDLSEIYLTPIAIAALCMIIYGGFLAYAQKDLKTLIA 304

Query: 284 YHTVSQMGYILLGLSTGNV---YGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS 340
           Y + S MG ++LG+ + NV    GA     AH +   GLFL  G + +     ++   GS
Sbjct: 305 YSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGIIVMGLFLLAGILEERASSLEIARFGS 364

Query: 341 ---RNILLIVSIAILSLAISGLGITIGGVAK--SYLATTEKAIIYAVSFGTAF------- 388
                 +      I+ +A  G+ ++IG V +  S L       + A+  GT+        
Sbjct: 365 IAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSIILSAIYM 424

Query: 389 --SFSKLNYYLWKGYGNEPTNFSILPSLTLGVLTVLVGIEL 427
             S+  + +   K   N+ + F  L +  +GVL+V++ + L
Sbjct: 425 LTSYKDVFFGNLKAGSNQISVFEDLNAREVGVLSVILALIL 465


>gi|11497457 NADH dehydrogenase (ubiquinone), subunit 4 [Prototheca wickerhamii]
           >gi|3122533|sp|Q37617|NU4M_PROWI NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 4 >gi|7432347|pir||T11916 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
           Prototheca wickerhamii mitochondrion
           >gi|467848|gb|AAD12635.1| (U02970) NADH dehydrogenase
           (ubiquinone), subunit 4 [Prototheca wickerhamii]
           Length = 523
           
 Score =  111 bits (275), Expect = 2e-23
 Identities = 79/287 (27%), Positives = 148/287 (51%), Gaps = 20/287 (6%)

Query: 71  IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNW-KELSL-LLLMHSGLIGAFISKDY 128
           +   +G+D +S  F+I   L+     L     +  + KE  +  L++ + ++  F   D 
Sbjct: 111 LNFALGVDGISLFFIILTTLLVPICILVSWNNIEVYVKEYCIAFLVLETLMLTVFSVLDL 170

Query: 129 FNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGYLN 183
             FY+F E   +  + +I    S++R+  AA+++ L ++  S +++LA+ +IYFQTG L+
Sbjct: 171 LLFYIFFESVLIPMFIIIGVWGSRERKIRAAYQFFLYTLFGSVLMLLAILLIYFQTGTLD 230

Query: 184 VELA--SEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
           +E+   S+        L LA   S  +K  + P+H+WLP+AH  A T  S IL+GI +K 
Sbjct: 231 IEMLYLSDFSETRQCILWLAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKL 290

Query: 241 PIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI 293
             YG +  S        +     +   +++++ +     I Q + K+++AY +V+ M ++
Sbjct: 291 GTYGFLRFSIPLFPYACIYFTPLIYTMSVIAIVYTSCTTIRQIDLKKIIAYSSVAHMNFV 350

Query: 294 LLGL---STGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKY 337
            +GL   +T  + G+ L  ++H +    LFL VG + D  K + L+Y
Sbjct: 351 TIGLFSQNTQGIEGSILLMISHGLVSPALFLCVGVLYDRHKTRLLRY 397


>pir||S75340 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
           Synechocystis sp. (strain PCC 6803)
           >gi|1652331|dbj|BAA17254.1| (D90904) NADH dehydrogenase
           subunit 5 [Synechocystis sp.]
           Length = 495
           
 Score =  111 bits (274), Expect = 2e-23
 Identities = 93/311 (29%), Positives = 156/311 (49%), Gaps = 20/311 (6%)

Query: 72  GIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNF 131
           GI + LD + S FL+   LV  A  LY             L+++H  L  AF+S D  + 
Sbjct: 71  GILLQLDNLGSYFLLTNGLVTLAVLLYCWASPRTTFFYVQLMVLHVSLNAAFLSTDLISL 130

Query: 132 YVFMELSAVSSYALIASQDREAA----FKYLLLSMTASYVLILALGMIYFQTGYLNVELA 187
           YV +E+  +SS+ LI    + A+     +YL ++ TA    ++ + ++Y  T  L+ +  
Sbjct: 131 YVCLEVVGLSSFLLIIYPRQAASSWIGLRYLFVTNTALLFYLIGVMLVYQATNSLDFQGL 190

Query: 188 SEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLIL 247
           +         + L  + L++K  IF   +W P   S A   V+++LSGI VKA I  L+ 
Sbjct: 191 ATAPYE---AIALIFLGLLIKGEIFLSGLWSPQTSSIASAPVAALLSGIVVKAGILPLLR 247

Query: 248 LSNLGDLSFLKPF--AILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGA 305
            ++L +   +  +  AI +   G+ + +   +++R+LAY T+SQMG+IL+  + G     
Sbjct: 248 FASLSERLAMMVWGLAIATALLGMGLGMFARDSRRILAYSTISQMGFILVAPAVGG---- 303

Query: 306 TLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNI--LLIVSIAILSLAISGLGITI 363
            LY+L H + K  LFL VG++      +DL  L ++ I   L + + + S +I GL I  
Sbjct: 304 -LYALTHGLAKACLFLLVGSL----PERDLDKLQAQPISYKLWLPMVLASSSIIGLPILA 358

Query: 364 GGVAKSYLATT 374
           G  AK+    T
Sbjct: 359 GFEAKTLTLET 369


>pir||S38322 NADH dehydrogenase I chain nuoM - Escherichia coli (strain AN387)
           Length = 458
           
 Score =  110 bits (273), Expect = 3e-23
 Identities = 106/386 (27%), Positives = 175/386 (44%), Gaps = 50/386 (12%)

Query: 49  VFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVS------STFLIAEFLVFGASSLYLVKR 102
           + LP L+     GG +       G++V   W++      +  L  +  + G  SL     
Sbjct: 1   MLLPWLILIPFIGGFLCWQTERFGVKVPR-WIALITMGLTLALSLQLWLQGGYSLTQSAG 59

Query: 103 VTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREA--------- 153
           +  W+    +  +  G+IG F++ D F F+ F E+  V  Y LIA    +A         
Sbjct: 60  IPQWQSEFDMPWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITA 119

Query: 154 AFKYLLLSMTASYVLILALGMIYF----QTGY--------LNVELASEVGLRDDTPLRLA 201
           A K+ + +  +  V+++A+  + F     TG         LN  ++S V    +  L L 
Sbjct: 120 ATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGV----EYLLMLG 175

Query: 202 A-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF 260
             I+  +K  + PLH WLPDAHS A T  S  L+GI +K   YGL+  S     +    F
Sbjct: 176 FFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEF 235

Query: 261 AILSMAFGVI-------MAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSL 310
           A ++M  GVI       MA  Q + KRL+AY +VS MG++L+ + TG+     GA +  +
Sbjct: 236 APIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMI 295

Query: 311 AHAMFKGGLFLGVGAIIDARKRKDLKYLGSR------NILLIVSIAILSLAISGLGITIG 364
           AH +   GLF+  G + +    +D++ +G           L +  A+ +L + G G  +G
Sbjct: 296 AHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVG 355

Query: 365 GVAKSYLATTEKAIIYAVS-FGTAFS 389
                + +     +I  +S FG  F+
Sbjct: 356 EFMILFGSFQVVPVITVISTFGLVFA 381


>pir||E83514 probable NADH dehydrogenase PA1056 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9946970|gb|AAG04445.1|AE004537_10 (AE004537)
           probable NADH dehydrogenase [Pseudomonas aeruginosa]
           Length = 499
           
 Score =  110 bits (272), Expect = 4e-23
 Identities = 87/299 (29%), Positives = 156/299 (52%), Gaps = 31/299 (10%)

Query: 64  VGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKEL--SLLLLMHSGLIG 121
           +G +    GI + LD +++  L+A  ++  A+ +Y ++      +   +L      G+ G
Sbjct: 60  LGNWAAPFGIVLMLDRLAALMLLATAVLGSAALIYALRGEDRLGKHFHALFQFQLLGING 119

Query: 122 AFISKDYFNFYVFMELSAVSSYALI----ASQDREAAFKYLLLSMTASYVLILALGMIYF 177
           AF++ D FN +VF E+  ++SYAL+     ++   +   Y++L++  S   ++A+G +Y 
Sbjct: 120 AFLTGDLFNLFVFFEILLIASYALLLHGGGAERVRSGLHYVILNLVGSAFFLIAVGTLYG 179

Query: 178 QTGYLNV-ELASEVGLRD--DTPLRLAA-----ISLILKAGIFPLHVWLPDAHSNAKTYV 229
            TG LN+ ++A ++ + D    PL  AA     +   LKA + PL+ WLP A++ A   V
Sbjct: 180 LTGTLNMADMAQKIAMADAERAPLLAAAGLLLLVVFALKAALLPLYFWLPRAYATASAPV 239

Query: 230 SSILSGIAVKAPIYGLILLSNL------GDL-----SFLKPFAILSMAFGVIMAILQFNA 278
           +++ + I  K  IY ++ +  L      G+L     ++L P A+ ++  G I A+     
Sbjct: 240 AALFA-IMTKVGIYSILRVYTLVFGDAAGELANLAQAWLWPLALATLGLGAIGALAARTL 298

Query: 279 KRLLAYHTVSQMGYILLGLSTGN--VYGATLYSLAHAMF-KGGLFLGVGAIIDARKRKD 334
           + LLAY  V   G +L G++ G+     A+LY L H+ +  GGLFL    +  AR+R D
Sbjct: 299 QGLLAYLVVVSAGTLLAGVALGSERALAASLYYLLHSTWIAGGLFLLADLV--ARQRGD 355


>pir||F71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO13 -
           Helicobacter pylori (strain J99)
           >gi|4155783|gb|AAD06759.1| (AE001545) NADH
           oxidoreductase I [Helicobacter pylori J99]
           Length = 512
           
 Score =  110 bits (272), Expect = 4e-23
 Identities = 113/400 (28%), Positives = 182/400 (45%), Gaps = 43/400 (10%)

Query: 67  YPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISK 126
           Y   +   VG+D ++   L+   +V   S +Y+ +R  ++  +  LLL+   L+G F S 
Sbjct: 70  YQIGVNYHVGVDGIALFLLLLNAIVVLLSVIYVKERRKDF--VICLLLLEGILMGVFSSL 127

Query: 127 DYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILALGMIYFQTGYL 182
           +   FY F E+S +    LI    R     +  K+ L +  AS  L + LG++Y    Y 
Sbjct: 128 NVIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLAS--LCMLLGILYIGYDYA 185

Query: 183 NVELASEVGLRDDTPLRLAA-----------ISLILKAGIFPLHVWLPDAHSNAKTYVSS 231
           N        + D   L  ++           I + +K  +FPLH WLP A+SNA T  S 
Sbjct: 186 NNYGMMSFDILDWYQLNFSSGIKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSNAPTLGSV 245

Query: 232 ILSGIAVKAPIYGLI--LLSNLGDLS--FLKPFAILSMA---FGVIMAILQFNAKRLLAY 284
           +LS +  K   Y L+  LL    +LS  +L P AI+++    +G  +A  Q + K L+AY
Sbjct: 246 MLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKDLKTLIAY 305

Query: 285 HTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS- 340
            + S MG ++LG+ + N   V GA     AH +   GLFL  G + +     ++   GS 
Sbjct: 306 SSFSHMGVVVLGVFSFNVEGVSGAVFMMFAHGVIVMGLFLLAGILEERASSLEIARFGSI 365

Query: 341 --RNILLIVSIAILSLAISGLGITIGGVAK--SYLATTEKAIIYAVSFGTAFSFS---KL 393
                +      I+ +A  G+ ++IG V +  S L       + A+  GT+   S    L
Sbjct: 366 AKSAPVFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSIILSAVYML 425

Query: 394 NYYLWKGYGNEPTN------FSILPSLTLGVLTVLVGIEL 427
             Y    +GN  T       F  L +  +GVL+V++ + L
Sbjct: 426 TSYKDVFFGNLKTGNNQISVFEDLNAREVGVLSVILALIL 465


>gi|11466471 NADH dehydrogenase subunit 4 [Chrysodidymus synuroideus]
           >gi|7110468|gb|AAF36940.1|AF222718_14 (AF222718) NADH
           dehydrogenase subunit 4 [Chrysodidymus synuroideus]
           Length = 482
           
 Score =  110 bits (272), Expect = 4e-23
 Identities = 83/303 (27%), Positives = 143/303 (46%), Gaps = 19/303 (6%)

Query: 76  GLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFM 135
           GLD +S  F +   L+     L+      +      L+L+   L+  F   D   FY+F 
Sbjct: 77  GLDSISIYFFVLTSLLSFLCVLFSWTNTNSKDFFFNLILLELLLLLVFSVLDLILFYIFF 136

Query: 136 ELSAVSSYALIA---SQDREAAFKYLLLSMTASYVLILALGMIYFQ----TGYLNVELAS 188
           E   +  + +I    S+ R+    YLL   T    +++ +G+IY      T    +  + 
Sbjct: 137 EAILIPMFLIIGMLGSRSRKIRAAYLLFFYTLIGSILMLVGIIYIYFIVGTSSFEIIFSY 196

Query: 189 EVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLIL 247
              L++   L LA  IS   K  +FP H+WLP+AH  A T  S +L+GI +K  +YG + 
Sbjct: 197 NFSLQEQQWLWLAFFISFASKIPMFPFHIWLPEAHVEAPTVGSVLLAGILLKLGVYGFLR 256

Query: 248 LS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG 300
            S       +L    F+    I+ + +    AI Q + KR++AY +++ M  ++LG+ + 
Sbjct: 257 FSLTLFSEASLYYSPFVYVLCIIGILYSSFTAIRQTDIKRIIAYSSIAHMNLVVLGIFSF 316

Query: 301 NVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSR-NILLIVSIAILSLAI 356
           N+    G+ L SL+H    GG+FL VG + D    + L Y G   +++ + S   L+  +
Sbjct: 317 NIIGLEGSILQSLSHGFVSGGMFLLVGILYDRYHSRLLYYYGGLVHVMPLYSFFFLAFTL 376

Query: 357 SGL 359
           + +
Sbjct: 377 ANI 379


>pir||S16447 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - wheat
           mitochondrion
           Length = 495
           
 Score =  109 bits (271), Expect = 5e-23
 Identities = 95/356 (26%), Positives = 168/356 (46%), Gaps = 43/356 (12%)

Query: 71  IGIEVGLDWVS------STFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFI 124
           I + +G+D +S      +TFLI   ++ G S +    R    + +   L+    +I  F 
Sbjct: 80  IHLYMGIDGLSLFFVILTTFLIPICILVGWSGM----RSFGKEYIIAFLICEFLMIAVFC 135

Query: 125 SKDYFNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQT 179
             D   FYVF E   +  + +I    S+ R+  AA+++ L ++  S  ++LA+ +I  QT
Sbjct: 136 MLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQT 195

Query: 180 GY--LNVELASEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGI 236
           G   L + L +E   R    L +A   S  +K  + P+H+WLP+AH  A T  S IL+GI
Sbjct: 196 GTTDLQILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGI 255

Query: 237 AVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQ 289
            +K   YG +  S        L    F+   + +++ +  +  + Q + K+++AY +V+ 
Sbjct: 256 LLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAH 315

Query: 290 MGYILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS------ 340
           M  + +G+ + N+    G+ L  L+H +    LFL VG + D  K + ++Y G       
Sbjct: 316 MNLVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMP 375

Query: 341 --RNILLIVSIAILSLA-----ISGLGITIGGVAKSYLATTEKAIIYAVSFGTAFS 389
               I    ++A +SL      I    I +G   ++ L  T +A+   +  G A+S
Sbjct: 376 NFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLRAL--GMILGAAYS 429


>pir||T12297 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 [similarity] -
           Pseudomonas syringae (fragment)
           >gi|2920663|gb|AAC04581.1| (AF048756) NADH dehydrogenase
           I chain M [Pseudomonas syringae]
           Length = 444
           
 Score =  109 bits (269), Expect = 9e-23
 Identities = 92/332 (27%), Positives = 165/332 (48%), Gaps = 39/332 (11%)

Query: 71  IGIEVGLDWVSSTFLIAEFLVFGASSLYL---VKRVTNWKELSLLLLMHSGLIGAFISKD 127
           I + + LD +S   ++   L+   S L     ++R   +  L+L+ ++  G++G F++ D
Sbjct: 12  IDVHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRKVGFFHLNLMWIL-GGVVGVFLAID 70

Query: 128 YFNFYVFMELSAVSSYALIA-----SQDRE-----AAFKYLLLSMTASYVLILA-LGMI- 175
            F F+ F E+  V  Y LIA     S D +     AA K+ + +  +  ++++A LG++ 
Sbjct: 71  LFMFFFFWEMMLVPMYFLIALWGHSSSDGKKTRIYAATKFFIFTQASGLIMLVAILGLVL 130

Query: 176 --YFQTGYLNVELAS--EVGLRDDTPLRLAA---ISLILKAGIFPLHVWLPDAHSNAKTY 228
             + QTG +    A   +  L   T   L     I+  +K  + PLH WLPDAH+ A T 
Sbjct: 131 VHFNQTGVITFAYADLLKTKLAPGTEYILMLGFFIAFAVKLPVVPLHSWLPDAHAQAPTA 190

Query: 229 VSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFGVI-------MAILQFNAKRL 281
            S  L+GI +K   YGL+  +     +    FA ++M  G++       +A  Q + KRL
Sbjct: 191 GSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTLGLVGIFYGAFLAFAQTDIKRL 250

Query: 282 LAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYL 338
           +A+ +VS MG++L+G+ +G+   + G  +  +AH +    LF+  G + +    +D++ +
Sbjct: 251 IAFSSVSHMGFVLIGIYSGSQQALQGVLIQMIAHGLSAAALFILSGQLYERLHTRDMREM 310

Query: 339 GS--RNILLIVSIAIL----SLAISGLGITIG 364
           G     I  I +I++     SL + G G  +G
Sbjct: 311 GGLWSRIAYIPAISLFFAAASLGLPGTGNFVG 342


>pir||G71683 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain N2 RP284 -
           Rickettsia prowazekii >gi|3860845|emb|CAA14745.1|
           (AJ235271) NADH DEHYDROGENASE I CHAIN N (nuoN2)
           [Rickettsia prowazekii]
           Length = 432
           
 Score =  109 bits (269), Expect = 9e-23
 Identities = 90/329 (27%), Positives = 165/329 (49%), Gaps = 41/329 (12%)

Query: 64  VGGYPREIGIEVGLDWVSST------FLIAEFLVF--GASSLYLVKRVTNWKE---LSLL 112
           +GG+   IGIE  L+ ++         ++  FLVF    ++  +++ + N ++     +L
Sbjct: 63  IGGWTSNIGIEYRLNSLNQATTIYLNLVLLFFLVFCHKMTNRTILQYINNNRKSLFYGIL 122

Query: 113 LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVL 168
           L  H+G +G   + D+FN YVF+E+SA+SSY LIAS +       AF YL++    +  +
Sbjct: 123 LFAHTGYLGMISTNDFFNLYVFIEISALSSYVLIASGNNPKSLVGAFDYLIMGSIGATFI 182

Query: 169 ILALGMIYFQTGYLNV-ELASEVGLRDDTPLRLAAISL-------ILKAGIFPLHVWLPD 220
           ++A+G++   TG LN+ ++A+   L++ T LR+  I +       ILK   FP+H W+  
Sbjct: 183 LIAIGLLLSITGSLNMHDIAAY--LKEYTKLRIITIVIGFFLIGSILKTAFFPMHFWMMR 240

Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNL---------GDLSFLKPFAILSMAFGVIM 271
           A++N  + +   L+GI+    IY +   + +            +F++P A+ S+      
Sbjct: 241 AYNNTASIILVYLAGISTIIGIYIIYKFTYIIIGYETIKTAITNFIRPIALASLIIAPYF 300

Query: 272 AILQFNAKRLLAYHTVSQMGYI-LLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDAR 330
           A    + K ++ Y   +Q+GY+ LL ++   +       L  ++ K  LFL + +  ++ 
Sbjct: 301 AYQAKDFKNIIIYSCFTQIGYVFLLYITENGIIMLPSLLLIDSINKISLFL-IASYNESY 359

Query: 331 KRKDLKYLGSRNILLIVSIAILSLAISGL 359
           KR+  K L      +I+ I    L IS L
Sbjct: 360 KREPNKIL-----TIIIIICSCGLPISPL 383


>gb|AAF65741.1|AF228525_11 (AF228525) F420H2 dehydrogenase subunit FpoN [Methanosarcina mazei]
           Length = 493
           
 Score =  109 bits (269), Expect = 9e-23
 Identities = 88/365 (24%), Positives = 166/365 (45%), Gaps = 35/365 (9%)

Query: 67  YPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISK 126
           +   + I+    +    FL    +V  AS  Y        +  +L+L    G++    + 
Sbjct: 69  FSETLSIDALSQFFKLVFLAVALIVSIASIKYTENSDHTEEFYTLVLFATFGMMIVASAN 128

Query: 127 DYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMTASYVLILALGMIYFQTGY 181
           D    +   EL++++++AL   + +     E A KY ++   ++ +++  L  +Y  TG 
Sbjct: 129 DLILLFCAFELASLATFALAGFEKQNARSLEGAMKYFVIGSVSAALMLFGLSFVYGATGT 188

Query: 182 LNVEL-ASEVGLRDDTPLRLAAISLI-----LKAGIFPLHVWLPDAHSNAKTYVSSILS- 234
            ++ L A   GL    P+ + AI L+      K  + P H+W PD +  + + VS++L+ 
Sbjct: 189 TSIPLIAQNPGLLTGNPIGIVAIVLLTAGFGFKMALVPFHMWAPDTYQGSPSVVSALLAA 248

Query: 235 -----GIAVKAPIYGLILLSNLGDLSFLKPF-AILSMAFGVIMAILQFNAKRLLAYHTVS 288
                G      ++ + L +   D  F+    A+++M FG ++A+ Q + KR+LAY +++
Sbjct: 249 GSKKMGFVAAFRVFIIALAALQPDWQFMFTLLAVVTMTFGNVVAVAQTSVKRMLAYSSLA 308

Query: 289 QMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAI---IDARKRKDL------- 335
           Q GYI +  +      + G  +Y+LAHA  K G F+   A+   I + K  +L       
Sbjct: 309 QAGYIAMAFAVMTPVALAGGIMYTLAHAFMKAGAFIAAAAVVWMITSEKTGNLDIPDHLD 368

Query: 336 --KYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATTEKAIIYAVSFGTAFSFS 391
             + LG R  L  + + +   A++G+  T G +AK  L  +T +  + +        S  
Sbjct: 369 SFRGLGKRMPLAALCMTVFVFALAGIPPTAGFMAKFVLFSSTIQAGMTWLAVIAILNSAL 428

Query: 392 KLNYY 396
            L YY
Sbjct: 429 SLFYY 433


>gi|11465868 NADH dehydrogenase subunit 4 [Ochromonas danica]
           >gi|10505201|gb|AAG18383.1|AF287134_8 (AF287134) NADH
           dehydrogenase subunit 4 [Ochromonas danica]
           Length = 483
           
 Score =  109 bits (269), Expect = 9e-23
 Identities = 82/310 (26%), Positives = 148/310 (47%), Gaps = 19/310 (6%)

Query: 71  IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFN 130
           +    GLD +S  F     L+     LY++      + L LL+ +   L+  F   D   
Sbjct: 72  LSFSFGLDGISIFFFFLTSLLIFLCVLYVLNENNLKQYLVLLISIELILLIIFSVLDLML 131

Query: 131 FYVFMELSAVSSYALIA---SQDREAAFKYLLLSMTASYVLILALGMIYFQT--GYLNVE 185
           FY+F E   +  + +I    S++R+    YL    T    L+L +G++Y  +  G  N+E
Sbjct: 132 FYIFFEAILIPMFIIIGVYGSRERKVRAVYLFFFYTLCGSLLLLVGVLYIYSKIGSFNLE 191

Query: 186 --LASEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPI 242
             +  +    ++  L  A  +S   K  +FP H+WLP+AH  A T  S +L+G+ +K  +
Sbjct: 192 YLMCYQFTKTEELLLWFAFFLSFASKIPMFPFHIWLPEAHVEAPTIGSVLLAGVLLKLGV 251

Query: 243 YGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILL 295
           YG I  S       +L    F+   +++S+ +  + A+ Q + KR++AY +++ M  + L
Sbjct: 252 YGFIRFSLTLFPYASLFYSPFIYFLSLISIIYASLTALRQTDLKRIIAYSSIAHMNLVTL 311

Query: 296 GLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS-RNILLIVSIAI 351
           G+   N   + G+ + SL+H    GG+F  +G +      + L Y G   + + + SI  
Sbjct: 312 GIFAFNNIGLEGSIIQSLSHGFVAGGMFFLIGILYSRYHSRFLYYYGGLAHTMPVYSIFF 371

Query: 352 LSLAISGLGI 361
           L L I+ + +
Sbjct: 372 LLLTIANIAL 381


>dbj|BAA35098.1| (AB015981) MnhD [Staphylococcus aureus]
           Length = 498
           
 Score =  108 bits (268), Expect = 1e-22
 Identities = 107/457 (23%), Positives = 206/457 (44%), Gaps = 47/457 (10%)

Query: 4   VIMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGV 63
           V+ ++ PVI ++L+   G   I   + A     LT     + L  V        +  G +
Sbjct: 8   VLTLVIPVITAILLVFIGKRPIIKRYVALGGTLLTLVAAIINLANV--------VKHGPI 59

Query: 64  ---VGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSL----LLLMH 116
              +G +     I   LD  S+  +I   ++     LY  + +   +E       +L M 
Sbjct: 60  RVELGSWKAPYSIVFVLDIFSALLIITSIIITAIVILYSYQTIGIERERYYYYFSVLFML 119

Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYALI----ASQDREAAFKYLLLSMTASYVLILAL 172
            G+IGAF + D FN +VF E+  +SSY L+         +   KY+L+++ +S   ++ +
Sbjct: 120 IGIIGAFTTGDIFNLFVFFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSFFVMGV 179

Query: 173 GMIYFQTGYLNV-ELASEVGLRDDTPLRLAAISLIL-------KAGIFPLHVWLPDAHSN 224
            ++Y   G LN+ ++++++         L  I  IL       KAG+FP+ VWLP A+  
Sbjct: 180 AILYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIFVFATKAGVFPMFVWLPSAYYA 239

Query: 225 AKTYVSSILSGIAVKAPIYGLILLSNL---GDLSF----LKPFAILSMAFGVIMAILQFN 277
               + +    +  K  +Y +    +L    ++SF    +   A+L++ FG + A+   N
Sbjct: 240 PPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYAN 299

Query: 278 AKRLLAYHTVSQMGYILLG---LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKD 334
            K+++ Y+ +  +G IL+G   ++   + GA  Y+L   + K  LFL +G +I      D
Sbjct: 300 IKKIILYNVMIAVGVILVGVAMMTESGMIGAIYYTLHDMLVKLALFLLIGIMIKITGTAD 359

Query: 335 LKYLG---SRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATTEKAI----IYAVSFG 385
           L+  G    R  +L  S  I +L+++G+    G   K ++  +T E+      +  +   
Sbjct: 360 LRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSS 419

Query: 386 TAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGVLTVL 422
               +S +  +L +G+  +P  + +   + +  LT +
Sbjct: 420 LVVLYSVIRIFL-QGFFGQPKGYDLNNKVDVKYLTTI 455


>sp|Q04050|NU4M_BRACM NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 >gi|282888|pir||S26870 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - field
           mustard mitochondrion >gi|12770|emb|CAA43207.1| (X60794)
           NADH dehydrogenase subunit 4 [Brassica rapa]
           >gi|738524|prf||2001250A NADH dehydrogenase:SUBUNIT=4
           [Brassica rapa]
           Length = 495
           
 Score =  108 bits (266), Expect = 2e-22
 Identities = 82/293 (27%), Positives = 145/293 (48%), Gaps = 28/293 (9%)

Query: 71  IGIEVGLDWVS------STFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFI 124
           I   +G+D +S      +TFLI   +  G S +    R    + ++  L+    +I  F 
Sbjct: 80  INFYLGIDGISLFFVILTTFLIPICISVGWSGM----RSYGKEYITAFLIREFLMIAVFR 135

Query: 125 SKDYFNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQT 179
             D   FYVF E   +  + +I    S+ R+  AA+++ L ++  S  ++LA+ +I FQT
Sbjct: 136 MLDLLLFYVFPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQT 195

Query: 180 GY--LNVELASEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGI 236
           G   L + L +E   R    L +A+  S  +K  + P+H+WLP+AH  A T  S IL+GI
Sbjct: 196 GTTDLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGI 255

Query: 237 AVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQ 289
            +K   +G +  S        L    F+   + +++ +  +    Q + K+++AY +V+ 
Sbjct: 256 PLKFGTHGFLRFSIPMFPEATLCSTPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAH 315

Query: 290 MGYILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLG 339
           M  + +G+ + N+    G+ L  L+H +    LFL VG + D  K + ++Y G
Sbjct: 316 MNLVTIGMFSPNIQGIGGSILPMLSHGLVPSALFLCVGVLYDRHKTRLVRYYG 368


>emb|CAA69742.3| (Y08501) NADH dehydrogenase subunit 4 [Arabidopsis thaliana]
           Length = 495
           
 Score =  108 bits (266), Expect = 2e-22
 Identities = 82/293 (27%), Positives = 145/293 (48%), Gaps = 28/293 (9%)

Query: 71  IGIEVGLDWVS------STFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFI 124
           I   +G+D +S      +TFLI   +  G S +    R    + ++  L+    +I  F 
Sbjct: 80  INFYLGIDGISLFFVILTTFLIPICISVGWSGM----RSYGKEYITAFLIREFLMIAVFR 135

Query: 125 SKDYFNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQT 179
             D   FYVF E   +  + +I    S+ R+  AA+++ L ++  S  ++LA+ +I FQT
Sbjct: 136 MLDLLLFYVFPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQT 195

Query: 180 GY--LNVELASEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGI 236
           G   L + L +E   R    L +A+  S  +K  + P+H+WLP+AH  A T  S IL+GI
Sbjct: 196 GTTDLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGI 255

Query: 237 AVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQ 289
            +K   +G +  S        L    F+   + +++ +  +    Q + K+++AY +V+ 
Sbjct: 256 PLKFGTHGFLRFSIPMFPEATLCSTPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAH 315

Query: 290 MGYILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLG 339
           M  + +G+ + N+    G+ L  L+H +    LFL VG + D  K + ++Y G
Sbjct: 316 MNLVTIGMFSPNIQGIGGSILPMLSHGLVPSALFLCVGVLYDRHKTRLVRYYG 368


>gi|11466552 NADH dehydrogenase, subunit 4 [Reclinomonas americana]
           >gi|7432306|pir||S78183 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 4 - Reclinomonas americana (ATCC
           50394) mitochondrion >gi|2258382|gb|AAD11916.1|
           (AF007261) NADH dehydrogenase, subunit 4 [Reclinomonas
           americana]
           Length = 493
           
 Score =  107 bits (265), Expect = 3e-22
 Identities = 95/362 (26%), Positives = 171/362 (46%), Gaps = 37/362 (10%)

Query: 7   VISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGG 66
           ++  +I + ++ +F  F I G   +  +    Y     ++L +FL  + F  S       
Sbjct: 10  LLPTIILTPILGVFILFLIPGWKTSLIKQVSLYASLLTFILSLFL-WIFFDKSTSKFQFV 68

Query: 67  YP------REIGIEVGLDWVS------STFLIAEFLVFGASSLYLVKRVTNWKELSL-LL 113
           Y         I   +G+D +S      +TFLI   ++ G  S+       N KE  +  L
Sbjct: 69  YEVNWIETLNIHFSLGIDGISLFLVILTTFLIPLCILTGWESIK-----HNIKEYMICFL 123

Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA---SQDREAAFKYLLLSMT--ASYVL 168
           L+ + LI  F   D   FY+F E   +  + +I    S++R+    Y+L   T   S ++
Sbjct: 124 LLDALLIMIFCVLDLVLFYIFFESVLIPMFIVIGVWGSRERKVRAAYMLFLYTFFGSLLM 183

Query: 169 ILALGMIYFQTGYLNVE--LASEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNA 225
           ++A+ +IYF  G  +++  L +E        L LA  IS  +K  + P HVWLP+AH  A
Sbjct: 184 LIAIMVIYFDAGTTDIQVLLTTEFSQERQKLLWLAFFISFAIKIPMVPFHVWLPEAHVEA 243

Query: 226 KTYVSSILSGIAVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNA 278
            T  S +L+G+ +K   YG++  S        +     +   +I+++ +  +  + Q + 
Sbjct: 244 PTAGSVLLAGVLLKLGGYGILRFSIPMFPEATVYFTPLVYTMSIIAIIYTSLTTLRQIDL 303

Query: 279 KRLLAYHTVSQMGYILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDL 335
           KR++AY +V+ M ++ +G+ + N+    G+ L  L+H +    LFL +G + D  K + L
Sbjct: 304 KRIIAYSSVAHMNFVTIGMFSLNMQGLEGSILLMLSHGIVSSALFLCIGVLYDRHKTRLL 363

Query: 336 KY 337
           KY
Sbjct: 364 KY 365


>pir||E81220 NADH dehydrogenase I, M chain NMB0258 [imported] - Neisseria
           meningitidis (group B strain MD58)
           >gi|7225481|gb|AAF40712.1| (AE002382) NADH dehydrogenase
           I, M subunit [Neisseria meningitidis MC58]
           Length = 498
           
 Score =  106 bits (263), Expect = 5e-22
 Identities = 91/330 (27%), Positives = 162/330 (48%), Gaps = 34/330 (10%)

Query: 70  EIGIEVGLDWVSSTFLIAE----FLVFGASSLYLVKRVTNWKELSLLLLMHSGLI-GAFI 124
           +I   +G+D +S  F+I       LV  A    + KR   +    L++   SGLI GAF 
Sbjct: 75  KINYALGVDGISVLFIILNAFITLLVVLAGWEVIQKRPAQYMAAFLIM---SGLINGAFA 131

Query: 125 SKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVLILALGMIYFQTG 180
           ++D   FYVF E   +  Y +I      +   A+ K  L ++  S ++++A+  +Y+QTG
Sbjct: 132 AQDAILFYVFFEGMLIPLYLIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYYQTG 191

Query: 181 YLNV---ELASEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGI 236
             ++   +   ++ L     L +A  +S  +K  +FP+H WLPDAH  A T  S +L+ I
Sbjct: 192 SFSIVDFQNIEQIPLGVQQLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAI 251

Query: 237 AVKAPIYGLI--LLSNLGDLS-FLKPFAILSMAFGVI----MAILQFNAKRLLAYHTVSQ 289
            +K   YG +  +L  + D + +  P  I+     VI    +A++Q + K+L+AY ++S 
Sbjct: 252 TLKLGAYGFLRFILPIMPDAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISH 311

Query: 290 MGYILLG--------LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDL-KYLGS 340
           MG++ LG        L    + GA +  ++H      +F+ +G + D    +++  Y G 
Sbjct: 312 MGFVTLGMFLFVDGQLDDWALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGV 371

Query: 341 RNIL--LIVSIAILSLAISGLGITIGGVAK 368
            N++      + +  +A +GL  T G V +
Sbjct: 372 VNVMPKFAAFMMLFGMANAGLPATSGFVGE 401


>gi|9838467 NADH dehydrogenase subunit 4 [Beta vulgaris]
           >gi|9087329|dbj|BAA99473.1| (AP000397) NADH
           dehydrogenase subunit 4 [Beta vulgaris]
           Length = 495
           
 Score =  106 bits (263), Expect = 5e-22
 Identities = 93/352 (26%), Positives = 166/352 (46%), Gaps = 43/352 (12%)

Query: 75  VGLDWVS------STFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDY 128
           +G+D +S      +TFLI   ++ G S +    R    + ++  L+    +I  F   D 
Sbjct: 84  LGIDGISLFFVILTTFLIPICILVGWSGM----RSYGKEYITASLIREFLMIAVFCMLDL 139

Query: 129 FNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGY-- 181
             FYV  E   +  + +I    S+ R+  AA+++ L ++  S  ++LA+ +I  QTG   
Sbjct: 140 LLFYVLSESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTD 199

Query: 182 LNVELASEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
           L + L +E   R    L +A   S  +K  + P+H+WLP+AH  A T  S IL+GI +K 
Sbjct: 200 LQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKL 259

Query: 241 PIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI 293
             YG +  S        L    F+   + +++ +  +  + Q + K+++AY +V+ M ++
Sbjct: 260 GTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFV 319

Query: 294 LLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS--------RN 342
            +G+ + N+    G+ L  L+H +    LFL VG + D  K + ++Y G           
Sbjct: 320 TIGMFSLNIQGIGGSILPMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFST 379

Query: 343 ILLIVSIAILSLA-----ISGLGITIGGVAKSYLATTEKAIIYAVSFGTAFS 389
           I    ++A +SL      I    I +G   ++ L  T  A+   +  G A+S
Sbjct: 380 IFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAAL--GMILGAAYS 429


>pir||T14236 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
           Synechococcus sp. (strain PCC 7002)
           >gi|2232047|gb|AAB62185.1| (U97516) NADH dehydrogenase
           subunit 4 [Synechococcus PCC7002]
           Length = 498
           
 Score =  106 bits (263), Expect = 5e-22
 Identities = 94/325 (28%), Positives = 166/325 (50%), Gaps = 28/325 (8%)

Query: 71  IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKEL--SLLLLMHSGLIGAFISKDY 128
           +   +G+D +S   ++   L+    ++Y +    +  +L  SL+LL++SG+ GA I+ + 
Sbjct: 67  LNYNLGVDGLSLPLIVLNSLLT-LVAIYSIGESNHRPKLYYSLILLINSGITGALIANNL 125

Query: 129 FNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILA-LGMIYF-QTGYL 182
             F++F E+  +  Y LIA    E    A+ K+L+ +  +   ++ A LG+++  Q+   
Sbjct: 126 LLFFLFYEIELIPFYLLIAIWGGEKKGYASTKFLIYTAISGLCVLAAFLGIVWLSQSSNF 185

Query: 183 NVELASEVGLRDDTPLRLAAISLI---LKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVK 239
           + E  +   L  +T + L  I LI   +K  + PLH WLPDA+  A   V+ +L G+  K
Sbjct: 186 DFENLTLENLEFNTKVILLTILLIGFGIKIPLVPLHTWLPDAYVEANPAVTVLLGGVFAK 245

Query: 240 APIYGLIL--LSNLGDL-SFLKP----FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGY 292
              YGL+   L    D+ S + P       +S+ +G + AI Q + KR++AY ++  MGY
Sbjct: 246 LGTYGLVRFGLQLFPDVWSTVSPALAVIGTVSVMYGSLAAIAQRDLKRMVAYSSIGHMGY 305

Query: 293 ILLGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS-----RNIL 344
           IL+  + G   ++ GA    ++H++    LF  VG I      +DL  L       R + 
Sbjct: 306 ILVSTAAGTELSLLGAVAQMISHSLILALLFHLVGIIERKVGTRDLDVLNGLMNPVRGLP 365

Query: 345 LIVSIAILS-LAISGLGITIGGVAK 368
           L  S+ IL+ +A +G+   +G VA+
Sbjct: 366 LTSSLLILAGMASAGIPGLVGFVAE 390


>pir||E83315 NADH dehydrogenase I chain M PA2648 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9948717|gb|AAG06036.1|AE004693_7 (AE004693) NADH
           dehydrogenase I chain M [Pseudomonas aeruginosa]
           Length = 509
           
 Score =  106 bits (262), Expect = 6e-22
 Identities = 104/373 (27%), Positives = 181/373 (47%), Gaps = 50/373 (13%)

Query: 100 VKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDRE-- 152
           ++R   +  L+LL ++  G+IG F++ D F F+ F E+  V  Y LIA     S D +  
Sbjct: 110 IQRRIGFFHLNLLWIL-GGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHSSDDGKKT 168

Query: 153 ---AAFKYLLLSMTASYVLILA-LGMIYFQ---TGYLNVELAS----EVGLRDDTPLRLA 201
              AA K+ + +  +  V+++A LG+++     TG +  + A+    ++    +  L L 
Sbjct: 169 RIYAATKFFIFTQASGLVMLVAILGLVFVNFNATGVITFDYATLLKTQLSPHVEWLLMLG 228

Query: 202 A-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI-----LLSNLGDLS 255
             ++  +K  + P+H WLPDAH+ A T  S  L+GI +K   YGLI     L  N    +
Sbjct: 229 FFVAFAVKMPVVPVHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLIRFALPLFPNAS--A 286

Query: 256 FLKPFA----ILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLY 308
              P A    I+ + +G +++  Q + KRL+AY +VS MG++++G+ +G+   + G  + 
Sbjct: 287 EFAPIAMWLGIIGIFYGALLSFAQTDIKRLVAYSSVSHMGFVMIGIYSGSQVALQGVVVQ 346

Query: 309 SLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS----RNILLIVSI--AILSLAISGLGIT 362
            +AH +    LF+  G + +    +D++ +G        L  +S+  A  SL + G G  
Sbjct: 347 MIAHGLSAAALFILCGQLYERLHTRDMRKMGGLWSRMPYLPAISLFFASASLGLPGTGNF 406

Query: 363 IGGVAKSYLA-TTEKAIIYAVSFGTAFSFSKLNYYLWKGY-GNEPTNFSILP------SL 414
           +G       A      II   +FG  F+       + + Y G   ++  IL       S+
Sbjct: 407 VGEFLILIGAFKVVPVIIVIATFGLVFASVYSLIMIHRAYFGPSQSDEPILGLDARELSM 466

Query: 415 TLG--VLTVLVGI 425
            LG  VL VL+G+
Sbjct: 467 VLGLAVLLVLLGV 479


>pir||H81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain M NMA2229
           [imported] - Neisseria meningitidis (group A strain
           Z2491) >gi|7380848|emb|CAB85440.1| (AL162758) NADH
           dehydrogenase chain M [Neisseria meningitidis Z2491]
           Length = 498
           
 Score =  106 bits (262), Expect = 6e-22
 Identities = 91/330 (27%), Positives = 162/330 (48%), Gaps = 34/330 (10%)

Query: 70  EIGIEVGLDWVSSTFLIAE----FLVFGASSLYLVKRVTNWKELSLLLLMHSGLI-GAFI 124
           +I   +G+D +S  F+I       LV  A    + KR   +    L++   SGLI GAF 
Sbjct: 75  KINYALGVDGISVLFIILNAFITLLVVLAGWEVIQKRPAQYMAAFLIM---SGLINGAFA 131

Query: 125 SKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVLILALGMIYFQTG 180
           ++D   FYVF E   +  Y +I      +   A+ K  L ++  S ++++A+  +Y+QTG
Sbjct: 132 AQDAILFYVFFEGMLIPLYLIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYYQTG 191

Query: 181 YLNV---ELASEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGI 236
             ++   +   ++ L     L  A  +S  +K  +FP+H WLPDAH  A T  S +L+ I
Sbjct: 192 SFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAI 251

Query: 237 AVKAPIYGLI--LLSNLGDLS-FLKPFAILSMAFGVI----MAILQFNAKRLLAYHTVSQ 289
            +K   YG +  +L  + D + +  P  I+     VI    +A++Q + K+L+AY ++S 
Sbjct: 252 TLKLGAYGFLRFILPIMPDAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISH 311

Query: 290 MGYILLG--------LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDL-KYLGS 340
           MG++ LG        L+   + GA +  ++H      +F+ +G + D    +++  Y G 
Sbjct: 312 MGFVTLGMFLFVNGQLNDWALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGV 371

Query: 341 RNIL--LIVSIAILSLAISGLGITIGGVAK 368
            N++      + +  +A +GL  T G V +
Sbjct: 372 VNVMPKFAAFMMLFGMANAGLPATSGFVGE 401


>gi|11465928 NADH dehydrogenase subunit 4 [Pedinomonas minor]
           >gi|7432333|pir||T11318 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 4 - Pedinomonas minor mitochondrion
           >gi|4378772|gb|AAD19670.1| (AF116775) NADH dehydrogenase
           subunit 4 [Pedinomonas minor]
           Length = 478
           
 Score =  106 bits (262), Expect = 6e-22
 Identities = 85/318 (26%), Positives = 154/318 (47%), Gaps = 34/318 (10%)

Query: 75  VGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSL--LLLMHSGLIGAFISKDYFNFY 132
           +G+D  S  FLI    +F    +Y +K +    ++ L  L+ +   L+  FIS+D   F+
Sbjct: 72  IGIDKFSFLFLILLSFLFSICFIYNIKNIIIKSKIWLFSLISIFIALLFTFISQDLLTFF 131

Query: 133 VFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELA 187
           +  E   +  + ++      S    AAF  ++L++  S   ++    I+ +   LN    
Sbjct: 132 IGFEFVLIPLFWIVIEFGSRSNKIFAAFFIVILTLFGSCFFLIGFFSIFLEISSLNFNFL 191

Query: 188 SEVGLRDDTPLRLAAI------SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAP 241
           S   L   +  R + I       L++K  + PLH+WLP+AH  A T  S +L+G+ +K  
Sbjct: 192 S-FSLSYLSESRQSFIWIFLFLGLMVKVPLIPLHLWLPEAHGEAPTVGSVLLAGVVLKLG 250

Query: 242 IYGLI-----LLSNLGDL--SFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYIL 294
            YGLI     L SN+     S L  +  L+M F  +++I Q + K+ +AY +++ +G ++
Sbjct: 251 TYGLIRCLVFLFSNVEVFIGSILFAYGFLNMVFAALISIRQLDIKKAIAYGSIAHIGTVV 310

Query: 295 LGLS---TGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAI 351
           +GLS     + +G+ +  + H +    LF  VG++ D          G+RNI    S+A+
Sbjct: 311 IGLSEVFNFSEFGSVIIIIFHGLVSPLLFFLVGSLYDR--------FGTRNIYYFGSLAL 362

Query: 352 LS--LAISGLGITIGGVA 367
           +S   +++     +G VA
Sbjct: 363 ISPLFSVNWFLAVLGNVA 380


>gi|7524971 NADH dehydrogenase subunit 4 [Dictyostelium discoideum]
           >gi|7489915|pir||T13787 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 4 - slime mold (Dictyostelium
           discoideum) mitochondrion >gi|11358984|pir||T43747 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - slime
           mold (Dictyostelium discoideum) mitochondrion
           >gi|2251092|dbj|BAA21118.1| (D16579) NADH dehydrogenase
           subunit 4 [Dictyostelium discoideum]
           >gi|4958874|dbj|BAA78051.1| (AB000109) NADH
           dehydrogenase subunit 4 [Dictyostelium discoideum]
           Length = 540
           
 Score =  106 bits (261), Expect = 8e-22
 Identities = 82/323 (25%), Positives = 154/323 (47%), Gaps = 26/323 (8%)

Query: 67  YPREIGIEVG--LDWVSSTFLIAEFLVF---GASSLYLVKRVTNWKELSLLLLMHSGLIG 121
           Y   + I +G  +D +S+ F+    ++       S+ ++K  T  K   +LLL    +I 
Sbjct: 74  YSNNVNINIGYSIDGISAIFIFLTIILILSCNLISIRVIKEKTEQKFQIMLLLTEILIIN 133

Query: 122 AFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIY 176
            F + D    Y+  E + +    +I      ++ + AAF+ L+ ++  S  +++++G++Y
Sbjct: 134 FFAATDLVQLYIVYEATLIPMVIMIGVWGSRTEKKIAAFQILIYTLIGSIFMLMSIGILY 193

Query: 177 FQTGYLNVELASE-VGLRDDTPLRLAAISLIL----KAGIFPLHVWLPDAHSNAKTYVSS 231
              G  +  +  E + +  +   +L  I   +    K  I PLH+WL  AH  A T  S 
Sbjct: 194 STLGTTDYIMIREYIDVLPENVRKLIFIGFFIGFAVKIPIAPLHLWLLRAHVEAPTAGSV 253

Query: 232 ILSGIAVKAPIYGLI-----LLSNLGDLSF--LKPFAILSMAFGVIMAILQFNAKRLLAY 284
           +L+GI +K   YG I     L  +L +  F  +    ++S+ +  I  + Q + KR++AY
Sbjct: 254 LLAGILLKLGGYGYIRYNIGLFPDLCEYYFPIIGGICLISILYTGIATLTQLDVKRIVAY 313

Query: 285 HTVSQMGYILLGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDL-KYLGS 340
            ++S M  I+LGL +G    + G  +  + H +  GGLFL +G I D  K + +  Y   
Sbjct: 314 SSISHMNVIVLGLFSGVLQGIEGGIILMIGHGVVSGGLFLCIGVIYDRCKTRIVYAYNNL 373

Query: 341 RNILLIVSIAILSLAISGLGITI 363
            +++ I++I    L +  +   I
Sbjct: 374 VHVMPIMAILFFLLVLGNIAFPI 396


>pir||T12399 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - Sarcophyton
           glaucum mitochondrion >gi|4091913|gb|AAC99647.1|
           (AF064823) NADH dehydrogenase subunit 2 [Sarcophyton
           glaucum]
           Length = 457
           
 Score =  106 bits (261), Expect = 8e-22
 Identities = 104/378 (27%), Positives = 178/378 (46%), Gaps = 33/378 (8%)

Query: 37  LTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASS 96
           LTY +KA        P L   +   G VG     + +   L W  +  ++   ++ G + 
Sbjct: 22  LTYGLKA--------PTLRVAILLAGTVGAAGL-LAVSPLLCWTQAIKMLV--MLSGLAI 70

Query: 97  LYLVKRVTNWKELSLLLLM----HSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDR- 151
           L ++   T+ +  SLL+L+    +  LIGA    +  + Y+ +E+  +  + L+A     
Sbjct: 71  LCMLNHRTSHRTSSLLILLVILGNLLLIGA---TNLISIYLALEMQTLCMFILVAYNKNS 127

Query: 152 ----EAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLR--LAAISL 205
               EA  KY +L   +S + +    +IY  TG L ++      +   T     L  ISL
Sbjct: 128 LLSAEAGLKYFVLGALSSGLFLFGCALIYGSTGELELQFIRMCTVSYGTLAGKCLITISL 187

Query: 206 ILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSM 265
           + K    P H+W PD +  A T+V+++LS I  K  +  +I+   L D+  L    ++S+
Sbjct: 188 LFKVSAAPFHMWAPDVYEGAPTWVTALLS-IVPKLGVLAIIVQIGLNDMGLLIA-GLISL 245

Query: 266 AFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG--ATLYSLAHAMFKGGLFLGV 323
             G I A+ Q   KRLLAY  +S MG++LLG++ G++    A+L  +   +    L   V
Sbjct: 246 IVGAIGALNQTRIKRLLAYSGISHMGFVLLGIAIGSIESLQASLMYIGAYVITQILLWSV 305

Query: 324 GAIIDARKRKDLKYLG-SR-NILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYA 381
             II  ++   +++ G SR N +L +++A   L+ +G+   IG + K Y+        Y 
Sbjct: 306 VLIISPKRDMIIEFSGVSRLNPMLALALAAGLLSTAGIPPLIGFLTKWYVILVAVGQGYY 365

Query: 382 VSFGTAFSFSKLN--YYL 397
           +S  TA   S +   YYL
Sbjct: 366 ISALTALICSVIAGVYYL 383


>sp|P23482|HYFB_ECOLI HYDROGENASE-4 COMPONENT B >gi|7446810|pir||A65024 hypothetical
           protein b2482 (bcp 3' region) - Escherichia coli (strain
           K-12) >gi|1788827|gb|AAC75535.1| (AE000335) hydrogenase
           4 membrane subunit [Escherichia coli K12]
           >gi|1799910|dbj|BAA16360.1| (D90876) similar to [PIR
           Accession Number D49749] [Escherichia coli]
           >gi|1805541|dbj|BAA16370.1| (D90877) similar to [PIR
           Accession Number D49749] [Escherichia coli]
           >gi|2668496|gb|AAB88564.1| (M63654) HyfB [Escherichia
           coli]
           Length = 672
           
 Score =  105 bits (260), Expect = 1e-21
 Identities = 89/288 (30%), Positives = 141/288 (48%), Gaps = 35/288 (12%)

Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYAL-IASQDR---EAAFKYLLLSMTASYVLILAL 172
           + ++   +  + F F V  E+ ++SS+ L IA QD+    A   Y  ++   S ++++A 
Sbjct: 123 ASMVALLVMDNAFWFIVLFEMMSLSSWFLVIARQDKTSINAGMLYFFIAHAGSVLIMIAF 182

Query: 173 GMIYFQTGYLNVE----LASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTY 228
            ++  ++G L+      L+   GL     L LA      KAG+ PLH WLP AH  A ++
Sbjct: 183 LLMGRESGSLDFASFRTLSLSPGLASAVFL-LAFFGFGAKAGMMPLHSWLPRAHPAAPSH 241

Query: 229 VSSILSGIAVKAPIYGL--ILLSNLGDLSFLKPFAILSMAFGVIMAIL-------QFNAK 279
            S+++SG+ VK  I+G+  + +  L        + IL MA G I A+L       + + K
Sbjct: 242 ASALMSGVMVKIGIFGILKVAMDLLAQTGLPLWWGILVMAIGAISALLGVLYALAEQDIK 301

Query: 280 RLLAYHTVSQMGYILLG--------------LSTGNVYGATLYSLAHAMFKGGLFLGVGA 325
           RLLA+ TV  +G ILL               L+   + GA  + L HA+FKG LFLG GA
Sbjct: 302 RLLAWSTVENVGIILLAVGVAMVGLSLHDPLLTVVGLLGALFHLLNHALFKGLLFLGAGA 361

Query: 326 IIDARKRKDLKYLGS---RNILLIVSIAILSLAISGLGITIGGVAKSY 370
           II      D++ +G+   R      +  I  LAIS +    G +++ Y
Sbjct: 362 IISRLHTHDMEKMGALAKRMPWTAAACLIGCLAISAIPPLNGFISEWY 409


>pir||S61395 probable Na+/H+-exchanging protein system component - Bacillus sp.
           (strain C-125) >gi|854655|dbj|BAA06609.1| (D31823) ORF1
           [Bacillus sp.] >gi|10173935|dbj|BAB05038.1| (AP001511)
           Na+/H+ antiporter [Bacillus halodurans]
           Length = 804
           
 Score =  105 bits (260), Expect = 1e-21
 Identities = 100/365 (27%), Positives = 172/365 (46%), Gaps = 49/365 (13%)

Query: 41  VKALYLLGVFLPMLLFPLSRGGVVGG---YPREIGIEVGLDWVSSTFLIAEFLVFGASSL 97
           V  L L G FL +L    S GGV+     +   +GI   + +V    L+   L+ G  +L
Sbjct: 36  VLPLVLFGYFLSLLPIT-SNGGVIHETIPWVPSLGINFTV-YVDGLSLLFALLITGIGTL 93

Query: 98  -------YLVKRVTNWKELSLLLLMHSG-LIGAFISKDYFNFYVFMELSAVSSYALIA-- 147
                  YL K+        + LLM  G ++G  +S +    YVF EL++++S  LI+  
Sbjct: 94  VALYSIYYLSKKTEKLNNFYVYLLMFMGAMLGVVLSDNLIVLYVFWELTSLASSLLISYW 153

Query: 148 ---SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNV-ELASEVGLRDDTPLRLAAI 203
               +    A K +L+++   + ++    ++Y  TG  ++ E+  +      + L L A+
Sbjct: 154 FHREKSTYGAQKSMLITVFGGFAMLGGFSLLYVITGTFSIREIIEQADAVLASTLFLPAM 213

Query: 204 SLIL-----KAGIFPLHVWLPDAHSNAKTYVSSIL-SGIAVKAPIYGLILLSNLGDLS-- 255
            L+L     K+  FP H+WLPDA   A T VS+ L S   VKA +Y +  L+ +   +  
Sbjct: 214 LLVLLGAFTKSAQFPFHIWLPDA-MEAPTPVSAYLHSATMVKAGLYLVARLTPVFGGTPE 272

Query: 256 ---FLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI--LLGLSTGNVY------- 303
               L  F I+++ +G I A+ Q + K +LA+ T+SQ+G I  L GL +  ++       
Sbjct: 273 WFWLLAGFGIITLCWGSISAVRQKDLKSILAFSTISQLGLIMCLFGLGSATLHFDPTDSM 332

Query: 304 ---------GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSL 354
                     A  + + HA FKG LF+ VG I      +D++ LG    ++ V+  +  +
Sbjct: 333 IKFYATATLAAVFHLINHATFKGSLFMTVGIIDHETGTRDIRKLGGLMAIMPVTFTVSLI 392

Query: 355 AISGL 359
            ++ +
Sbjct: 393 GLAAM 397


>sp|P57263|NUOM_BUCAI NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
           M) >gi|10038848|dbj|BAB12883.1| (AP001118) NADH
           dehydrogenase I chain M [Buchnera sp. APS]
           Length = 505
           
 Score =  105 bits (260), Expect = 1e-21
 Identities = 84/305 (27%), Positives = 145/305 (47%), Gaps = 43/305 (14%)

Query: 72  GIE--VGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSL--------LLLMHSGLIG 121
           GIE  + LD +S   LI       +S L ++  + +W E+           +L+ +G+IG
Sbjct: 76  GIEFNIALDGLSIIMLIF------SSFLSIIAIICSWNEIKKNEGFFYFNFMLVFTGIIG 129

Query: 122 AFISKDYFNFYVFMELSAVSSYALIA--------SQDREAAFKYLLLSMTASYVLILALG 173
            FIS D F F+ F E+  +  Y LIA         ++  AA K+ L S T+  +L+ ++ 
Sbjct: 130 VFISCDLFLFFCFWEIMLIPMYFLIALWSDKTEKKKNFLAANKFFLYSQTSGLILLSSIL 189

Query: 174 MIYFQTGYLNVELASEVGLRDDTPLRLAA---------ISLILKAGIFPLHVWLPDAHSN 224
           ++ F   Y    L     L  + P+ +           +S  +K  I P H WLPD HS 
Sbjct: 190 LLVFSHYYSTNILTFNYNLLINKPINIYVEYIVMIGFFLSFAIKMPIVPFHGWLPDIHSR 249

Query: 225 AKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFGVI-------MAILQFN 277
           + +  S  + G+ +K   Y L+  + +      K F+++++ +G+I       +A  Q N
Sbjct: 250 SLSCGSVEIIGVLLKTAPYALLRYNLVLFPDSTKSFSLIAVFWGIISIFYGAWIAFSQTN 309

Query: 278 AKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKD 334
            KRL+AY +VS MG IL+G+ + N   + G  +  L++++    L +  G I    K +D
Sbjct: 310 IKRLIAYSSVSHMGLILIGIYSNNERALQGVVIQMLSNSLTVAALCILSGQIYKRFKTQD 369

Query: 335 LKYLG 339
           +  +G
Sbjct: 370 MSKMG 374


>gi|11467925 NADH dehydrogenase subunit 4 [Scenedesmus obliquus]
           >gi|7711047|emb|CAB90371.1| (X17375) NADH dehydrogenase
           subunit 4 [Scenedesmus obliquus]
           >gi|8099208|gb|AAF72063.1|AF204057_18 (AF204057) NADH
           dehydrogenase subunit 4 [Scenedesmus obliquus]
           Length = 521
           
 Score =  104 bits (258), Expect = 2e-21
 Identities = 81/289 (28%), Positives = 134/289 (46%), Gaps = 20/289 (6%)

Query: 71  IGIEVGLDWVS--STFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDY 128
           I +E GLD +S     L A  +       +  +   +     LLL + S L   F S D 
Sbjct: 96  IKLEFGLDSLSLWMVLLTAALMPLAVLCSWNTQNAHSQSFYRLLLALESFLFRCFTSLDL 155

Query: 129 FNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLN 183
             FYV  E S +  + LI      ++   AA+  +L ++  S  ++  L ++Y + G  N
Sbjct: 156 LCFYVLYECSLLPMFLLIGLGGSRARKVRAAYLLVLYTLVGSLAMLPCLLLLYSRAGTTN 215

Query: 184 VELASEVGLRDDTPLRL---AAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
             L   + +     L L     ++  +K  + PLH+WLP+AH    T  S +L+G+ +K 
Sbjct: 216 YLLLRSLNIESSRQLLLWWGFFLAFAVKVPLMPLHLWLPEAHVERSTAGSVLLAGVLLKL 275

Query: 241 PIYGLI---LLSNLGDLSFLKP----FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI 293
             YGL+   L       ++L P      ++ + +  +  + Q + K+++AY +V+ M  +
Sbjct: 276 GTYGLLRFNLYMFPERSAYLGPRVSTICLIGVIYRSLTTLRQVDLKKIVAYSSVAHMSMV 335

Query: 294 LLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLG 339
           +L L T N   + G+    LAH +    LFL VGA+ D    K LKYLG
Sbjct: 336 VLALFTMNEVGILGSIFTMLAHGVRSPALFLCVGALYDRTHTKRLKYLG 384


>sp|P27572|NU4M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 >gi|14255|emb|CAA40452.1|
           (X57163) NADH-ubiquinone oxidoreductase chain 4
           [Triticum aestivum] >gi|21824|emb|CAA40453.1| (X57164)
           NADH-ubiquinone oxidoreductase chain 4 [Triticum
           aestivum]
           Length = 495
           
 Score =  104 bits (256), Expect = 3e-21
 Identities = 93/356 (26%), Positives = 166/356 (46%), Gaps = 43/356 (12%)

Query: 71  IGIEVGLDWVS------STFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFI 124
           I + +G+D +S      +TFLI   +  G S +    R    + ++  L+    +I    
Sbjct: 80  IHLYMGIDGLSLFFVILTTFLIPICISVGWSGM----RSFGKEYITAFLIREFLMIAVSC 135

Query: 125 SKDYFNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQT 179
             D   FYV  E   +  + +I    S+ R+  AA+++ L ++  S  ++LA+ +I  QT
Sbjct: 136 MLDPLLFYVLSESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQT 195

Query: 180 GY--LNVELASEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGI 236
           G   L + L +E   R    L +A   S  +K  + P+H+WLP+AH  A T  S IL+GI
Sbjct: 196 GTTDLQILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGI 255

Query: 237 AVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQ 289
            +K   YG +  S        L    F+   + +++ +  +  + Q + K+++AY +V+ 
Sbjct: 256 LLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAH 315

Query: 290 MGYILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS------ 340
           M  + +G+ + N+    G+ L  L+H +    LFL VG + D  K + ++Y G       
Sbjct: 316 MNLVTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMP 375

Query: 341 --RNILLIVSIAILSLA-----ISGLGITIGGVAKSYLATTEKAIIYAVSFGTAFS 389
               I    ++A +SL      I    I +G   ++ L  T +A+   +  G A+S
Sbjct: 376 NFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLRAL--GMILGAAYS 429


>sp|P50974|NUOM_RHOCA NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
           M) >gi|3282578|gb|AAC25004.1| (AF029365) NUOM
           [Rhodobacter capsulatus] >gi|1586527|prf||2204231H NADH
           ubiquinone oxidoreductase [Rhodobacter capsulatus]
           Length = 512
           
 Score =  103 bits (255), Expect = 4e-21
 Identities = 93/361 (25%), Positives = 171/361 (46%), Gaps = 43/361 (11%)

Query: 37  LTYEVKALYLLGV--FLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFG- 93
           +T+ V  L L G     P + F   R  ++G     +  ++G+D +S  F++    +   
Sbjct: 44  VTFLVSLLLLAGFDPANPGMQFVEDRAWIMG-----LHYKLGVDGISILFVMLTTFLMPL 98

Query: 94  --ASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA---- 147
             AS+ ++  RV  +  +   L++ + +IG F++ D   FY+F E   +  + +I     
Sbjct: 99  TIASAWHVETRVKEY--MIAFLVLEALMIGVFVALDLVLFYLFFEAGLIPMFLIIGIWGG 156

Query: 148 SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLN-VELASEVGLRDDTP--------- 197
            +   AAFK+ L +   S ++++A+  +Y   G  + V L S      D P         
Sbjct: 157 KERIYAAFKFFLYTFLGSVLMLVAMVAMYMMAGTTDIVTLMSFDFPHADLPFLGWWTLTG 216

Query: 198 -----LRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLS-- 249
                L LA   S  +K  ++P+H WLPDAH  A T  S +L+ + +K   YG +  S  
Sbjct: 217 GVQTLLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAVLLKMGGYGFLRFSLP 276

Query: 250 --NLGD---LSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGN--- 301
              +G     +F+   + +++ +  ++A+ Q + K+L+AY +V+ MGY+ +G+   N   
Sbjct: 277 MFPVGAETMTTFVFILSAVAIVYTSLVALAQEDMKKLIAYSSVAHMGYVTMGIFAANQQG 336

Query: 302 VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDL-KYLGSRNILLIVSIAILSLAISGLG 360
           V GA    L+H    G LFL VG I D    +++  Y G  N +   ++  +   ++ +G
Sbjct: 337 VDGAIFQMLSHGFISGALFLCVGVIYDRMHTREIAAYGGLVNRMPAYALIFMFFTMANVG 396

Query: 361 I 361
           +
Sbjct: 397 L 397


>gi|11466752 ndh4 [Marchantia polymorpha] >gi|128731|sp|P06263|NU4C_MARPO
           NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4, CHLOROPLAST
           >gi|66180|pir||DELVN4 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 4 - liverwort (Marchantia polymorpha)
           chloroplast >gi|11723|emb|CAA28134.1| (X04465) ndh4
           [Marchantia polymorpha]
           Length = 499
           
 Score =  103 bits (254), Expect = 5e-21
 Identities = 81/276 (29%), Positives = 130/276 (46%), Gaps = 28/276 (10%)

Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTAS- 165
           L+L M+SG IG F S+D   F+   EL  +  Y L+A    +    AA K++L +   S 
Sbjct: 117 LMLAMYSGQIGLFASQDILLFFFMWELELLPVYLLLAMWGGKRRLYAATKFILYTAAGSL 176

Query: 166 YVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAA-----ISLILKAGIFPLHVWLPD 220
           ++LI  L M ++ +     +    +  +    L +       I+  +K  I P H WLPD
Sbjct: 177 FILIGGLIMAFYNSNEFTFDFQFLINKKYPLELEIIIYLSFLIAYAVKLPIIPFHTWLPD 236

Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL----SFLKPFAILSMAFGVIMAIL-- 274
            H  A      +L+GI +K   YGLI + N+  L    SF  P+ ++  A  ++ A L  
Sbjct: 237 THGEAHYSTCMLLAGILLKMGAYGLIRI-NMELLPHAHSFFAPWLVIVGAIQIVYAALTS 295

Query: 275 --QFNAKRLLAYHTVSQMGYILLG---LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA 329
             Q N KR +AY +VS MG++L+G   ++   + GA L  ++H +    LF   G   D 
Sbjct: 296 LSQRNLKRRIAYSSVSHMGFVLIGIGSITNLGLNGAILQMISHGLIGASLFFLAGISYDR 355

Query: 330 RKRKDLKYLGS------RNILLIVSIAILSLAISGL 359
            +   L  +G       +   L  S ++ SLA+ G+
Sbjct: 356 TRTLVLDQMGGIGNSMPKIFTLFTSCSMASLALPGM 391


>sp|O53308|NUON_MYCTU NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
           N) >gi|7431996|pir||D70946 NADH dehydrogenase
           (ubiquinone) (EC 1.6.5.3) chain 2 [similarity] -
           Mycobacterium tuberculosis (strain H37RV)
           >gi|2827568|emb|CAA16623.1| (AL021646) nuoN
           [Mycobacterium tuberculosis]
           Length = 531
           
 Score =  103 bits (254), Expect = 5e-21
 Identities = 86/289 (29%), Positives = 140/289 (47%), Gaps = 32/289 (11%)

Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ------DREAAFKYLLLSMTA 164
           L +L   G++    S D    +V +E+ ++  Y +           +EAA KY LL   +
Sbjct: 155 LAMLSVGGMMVFPASNDLLTMFVALEVLSLPLYLMCGLARNRRLLSQEAAMKYFLLGAFS 214

Query: 165 SYVLILALGMIYFQTGYLNVE-LASEVGLRDDTPLRLA-----AISLILKAGIFPLHVWL 218
           S   +  + ++Y  TG L +  +   +  R D  + LA     A+ L+ K G  P H W+
Sbjct: 215 SAFFLYGVALLYGATGTLTLPGIRDALAARTDDSMALAGVALLAVGLLFKVGAVPFHSWI 274

Query: 219 PDAHSNAKTYVSSILSGIAVKAPIYGLIL------LSNLGDL--SFLKPFAILSMAFGVI 270
           PD +  A T ++  ++  A K   +G +L      L  L D     L   AIL+M  G +
Sbjct: 275 PDVYQGAPTPITGFMAA-ATKVAAFGALLRVVYVALPPLHDQWRPVLWAIAILTMTVGTV 333

Query: 271 MAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG--ATL-YSLAHAMFKGGLFLGVGAII 327
            A+ Q N KR+LAY +V+ +G+IL G+   N  G  ATL Y +A++    G F  VG + 
Sbjct: 334 TAVNQTNVKRMLAYSSVAHVGFILTGVIADNPAGLSATLFYLVAYSFSTMGAFAIVGLVR 393

Query: 328 DA-----RKRKDLKY---LGSRNILLIVSIAILSLAISGLGITIGGVAK 368
            A      +  DL +   LG R+ ++ V +++  LA +G+ +T G V+K
Sbjct: 394 GADGSAGSEDADLSHWAGLGQRSPIVGVMLSMFLLAFAGIPLTSGFVSK 442


>gi|11466428 subunit 4 of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
           >gi|7259571|gb|AAF43872.1|AF166114_84 (AF166114) subunit
           4 of NADH-plastoquinoneoxidoreductase [Mesostigma
           viride]
           Length = 507
           
 Score =  102 bits (253), Expect = 7e-21
 Identities = 72/277 (25%), Positives = 133/277 (47%), Gaps = 31/277 (11%)

Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALI----ASQDREAAFKYLLLSMTAS- 165
           L+L M+SG +G F S+D   F++  EL  +  Y L+      +   AA K++L +   S 
Sbjct: 117 LMLAMYSGQLGVFASQDLLLFFLMWELELIPIYILLIIWGGKKRLYAATKFILYTALGSI 176

Query: 166 YVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLI-------LKAGIFPLHVWL 218
           ++LI A GM ++     N+    ++    + P+ L  +  I       +K   FP+H WL
Sbjct: 177 FILIAAFGMAFYGE---NMSFDMQILGEKEYPINLEILFYICFLIAYAVKLPAFPVHTWL 233

Query: 219 PDAHSNAKTYVSSILSGIAVKAPIYGLILL-------SNLGDLSFLKPFAILSMAFGVIM 271
           PD H  A      +L+GI +K   Y LI +       +++    +L    ++++ +  + 
Sbjct: 234 PDTHGEAHYSTCMLLAGILLKMGGYALIRINMNMLPNAHIYFAPYLAIIGVINIIYAALT 293

Query: 272 AILQFNAKRLLAYHTVSQMGYILLGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIID 328
           +  Q N KR +AY ++S MG++L+G+S+     + GA L  ++H +    LF   G   D
Sbjct: 294 SFAQRNIKRKIAYSSISHMGFVLIGISSFTDIGLSGAMLQMVSHGLIGASLFFLAGTTYD 353

Query: 329 ARKRKDLKYLGS------RNILLIVSIAILSLAISGL 359
             +   L+ +G       +   +  + ++ SLA+ G+
Sbjct: 354 RTRTLILEDMGGIAKYMPKIFAMFTTCSLASLALPGM 390


>gb|AAF21812.1|AF097740_1 (AF097740) multiple resistance and pH regulation related protein A
           [Bacillus firmus]
           Length = 805
           
 Score =  102 bits (252), Expect = 9e-21
 Identities = 98/359 (27%), Positives = 168/359 (46%), Gaps = 47/359 (13%)

Query: 46  LLGVFLPMLLFPLSRGGVVGG---YPREIGIEVGLDWVSSTFLIAEFLVFGASSL----- 97
           +L ++    L   S GGVV     +   +GI   + +V    L+   L+ G  +L     
Sbjct: 40  VLFIYFIQYLSITSTGGVVEHTIPWVPSLGINFTV-FVDGLSLLFALLITGIGTLVILYS 98

Query: 98  --YLVKRVTNWKELSLLLLMHSG-LIGAFISKDYFNFYVFMELSAVSSYALIA-----SQ 149
             YL K+  +     + LLM  G ++G  +S +    YVF EL++++S  LI+      +
Sbjct: 99  IFYLSKKTESLNNFYVYLLMFMGAMLGVVLSDNLIVLYVFWELTSLASSLLISYWFHREK 158

Query: 150 DREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVE-LASEVGLRDDTPLRLAAISLIL- 207
               A K +L+++   + ++    ++Y  TG  ++  +   V L   + L L A+ L+L 
Sbjct: 159 STYGAQKSMLITVFGGFAMLGGFSLLYVMTGTFSIRGIIENVDLVTSSELFLPAMILVLL 218

Query: 208 ----KAGIFPLHVWLPDAHSNAKTYVSSIL-SGIAVKAPIYGLILLSNLGDLS-----FL 257
               K+  FP H+WLPDA   A T VS+ L S   VKA IY +  L+ +   S      L
Sbjct: 219 GAFTKSAQFPFHIWLPDA-MEAPTPVSAYLHSATMVKAGIYLVARLTPVFAGSAEWFWLL 277

Query: 258 KPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI--LLGLSTGNVY------------ 303
             F ++++ +G   A+ Q + K +LA+ TVSQ+G I  LLGL +  +Y            
Sbjct: 278 TGFGVVTLLWGSTSAVRQKDLKGILAFSTVSQLGLIMTLLGLGSAAIYFGESVDPAFYSF 337

Query: 304 ---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGL 359
               A  + + HA FKG LF+    I      +D++ LG    ++ V+  +  + ++ +
Sbjct: 338 AIMAAIFHLINHATFKGSLFMTACIIDHETGTRDIRKLGGLMAIMPVTFTVSLIGLASM 396


>emb|CAB89017.1| (AL353870) putative oxidoreductase. [Streptomyces coelicolor A3(2)]
           Length = 579
           
 Score =  102 bits (252), Expect = 9e-21
 Identities = 76/279 (27%), Positives = 137/279 (48%), Gaps = 26/279 (9%)

Query: 113 LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVL 168
           L++ +G+   F++ D  N YV  E+  V+S+ L+     +    A   Y+++S+ +S + 
Sbjct: 119 LILVAGVSCTFLAGDLVNLYVGFEIMLVASFVLLTIGGTATRIRAGSTYVIISLFSSVLF 178

Query: 169 ILALGMIYFQTGYLNVELASE------VGLRDDTPLRLAAISLILKAGIFPLHVWLPDAH 222
           ++A+ M Y   G +N+   +E       G+R      L  +  I KA +FPL  WLPD++
Sbjct: 179 LVAIAMTYAVAGTVNLAQLAERLQEVPPGVRTLLEAMLLTVFAI-KAAVFPLAAWLPDSY 237

Query: 223 SNAKTYVSSILSGIAVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQ 275
             A   V+++ +G+  K  +Y ++           LGDL  L   A+ SM  G++ A+ Q
Sbjct: 238 PTAPAPVTAVFAGLLTKVGVYSMLRTQTLLFPGHRLGDLLMLA--ALASMVVGILGAVAQ 295

Query: 276 FNAKRLLAYHTVSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAIIDARKR 332
            + KR+L++  +S +GY++ G++    G + GA +Y   H   +  LFL  G I      
Sbjct: 296 TDLKRVLSFTLISHIGYMVFGIALAGGGGISGAIVYVAHHITVQTTLFLVAGLIERRDGT 355

Query: 333 KDLKYLGS---RNILLIVSIAILSLAISGLGITIGGVAK 368
            +L  LG       LL V   + ++ ++G+    G + K
Sbjct: 356 TELTRLGGLARTAPLLAVLFFVPAMNLAGIPPLSGFIGK 394


>gi|11466208 NADH dehydrogenase subunit 4 [Naegleria gruberi]
           >gi|10444243|gb|AAG17809.1|AF288092_34 (AF288092) NADH
           dehydrogenase subunit 4 [Naegleria gruberi]
           Length = 474
           
 Score =  102 bits (252), Expect = 9e-21
 Identities = 86/289 (29%), Positives = 140/289 (47%), Gaps = 30/289 (10%)

Query: 76  GLDWVS------STFLIAEFLVFGASSLYLVKR--VTNWKEL-SLLLLMHSGLIGAFISK 126
           G+D +S      STFLI   L+F   S Y +K+  V+  K   S L L    LI  F + 
Sbjct: 59  GIDGISIFFIYLSTFLIPLCLLF---SFYNMKQKGVSEVKMYQSFLFLTLFLLIFVFSAL 115

Query: 127 DYFNFYVFMELSAVSSYALIASQDRE-----AAFKYLLLSMTASYVLILALGMIYFQTGY 181
           D   FY+  E+  +  + LI           A++ +   ++  S+++++++  +Y  TG 
Sbjct: 116 DILVFYIMFEIILIPFFVLIGVSSYRKRRIHASYLFFFYTLVGSFLMLISIFSLYSFTGT 175

Query: 182 LNVE--LASEVGL-RDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAV 238
            N+E  L ++    R++       IS  +K  +FP H+WLP+AH  A T  S +L+G+ +
Sbjct: 176 SNIEVLLNNQYSFYRENIVWLTFFISFAIKIPMFPAHIWLPEAHVEAPTEGSVLLAGVLL 235

Query: 239 KAPIYGLI-LLSNL--GDLSFLKPFAILSMAFGV----IMAILQFNAKRLLAYHTVSQMG 291
           K   YG +  L  L      +  P  IL    G+     + + Q + KR++AY +VS M 
Sbjct: 236 KLGSYGFLRFLMPLFPNSTYYYSPLVILIACLGIFYTSFVTLKQIDIKRIIAYSSVSHMN 295

Query: 292 YILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKY 337
             +LGL T +   + G+    +AH +  GGLF  VG + +    K LKY
Sbjct: 296 VCILGLFTFHSLGIAGSIHLMIAHGLVSGGLFFLVGMLYNRHHTKLLKY 344


>gb|AAF13041.1|AF157639_1 (AF157639) putative formate hydrogenlyase integral membrane subunit
           [Desulfitobacterium dehalogenans]
           Length = 637
           
 Score =  102 bits (251), Expect = 1e-20
 Identities = 93/331 (28%), Positives = 147/331 (44%), Gaps = 42/331 (12%)

Query: 46  LLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLY---LVKR 102
           +LG+F     FP+   G   G     G     D +++ FL   FL  G +SLY    +K 
Sbjct: 22  ILGIFFLGWNFPV---GDPSGQWNVAGFS--FDGLTAFFLFLLFLGQGVASLYGLGYMKE 76

Query: 103 VTNWKEL---SLLLLMHSG-LIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREA 153
               K L   SL  +   G + G  +  + F F    EL ++ S+ L+      + +R+A
Sbjct: 77  YEGKKSLISFSLSWVAFLGSMAGVLLVNNGFYFLFLWELMSLFSFFLVVYEHEETSNRKA 136

Query: 154 AFKYLLLSMTASYVLILALGMIYFQTGYLN----VELASEVGLRDDTPLRLAAISLILKA 209
           AF Y +++   +  LI A+  +Y +TG         +ASE+   +             KA
Sbjct: 137 AFIYFVMTHVGTVFLIAAVLYLYSKTGSFLYGDWAAIASELSPGEKIVSFYVFGGFGTKA 196

Query: 210 GIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILL-------SNLGDLSFLKPFAI 262
           G+ P H+WLP AH  A + VS+++SG+ VK  +Y ++ L         L     +    +
Sbjct: 197 GLVPFHIWLPYAHPVAPSPVSALMSGVMVKIALYMIMRLVWLTLAPMELWWGGLMLALGV 256

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYS------------- 309
           LS   G++ A ++ N KRLLAY TV  MG + + L T  +     Y+             
Sbjct: 257 LSAFIGILYACVERNVKRLLAYSTVENMGILTMALGTAMIAQTLGYTELVVLALAAFFWH 316

Query: 310 -LAHAMFKGGLFLGVGAIIDARKRKDLKYLG 339
            + H +FK  +F+  G II A   K L  +G
Sbjct: 317 GVHHLLFKSNMFMAAGNIIQATHTKKLDQMG 347


>pir||G81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N NMA2228
           [imported] - Neisseria meningitidis (group A strain
           Z2491) >gi|7380847|emb|CAB85439.1| (AL162758) NADH
           dehydrogenase chain N [Neisseria meningitidis Z2491]
           Length = 481
           
 Score =  101 bits (250), Expect = 2e-20
 Identities = 97/318 (30%), Positives = 156/318 (48%), Gaps = 33/318 (10%)

Query: 109 LSLLLLMHSGLIGAFISKDYF-NFYVFMELSAVSSYALIASQD-----REAAFKYLLLSM 162
           LSL  L+  G++   +S  +F   Y+ +EL +++ YALIA +       EAA KY +L  
Sbjct: 111 LSLFALLGMGVM---VSAGHFLTAYIGLELLSLALYALIALRRDSGFAAEAALKYFVLGA 167

Query: 163 TASYVLILALGMIYFQTGYLNVE--LASEVGLR-DDTPLRLAAISLIL----KAGIFPLH 215
            AS +L+  + M+Y  TG L     LAS      ++  L+L  + +++    K G  P H
Sbjct: 168 LASGLLLYGISMVYGATGSLEFAGVLASSFNEEANEWLLKLGLVFIVVAVAFKLGAVPFH 227

Query: 216 VWLPDAHSNAKTYVSSILSGIAVK--APIYGL-ILLSNLGDL--SFLKPFAIL---SMAF 267
           +W+PD +  A T V++++ G A K  A ++   IL++ LG +   +   FA+L   S+  
Sbjct: 228 MWVPDVYHGAPTSVTALV-GTAPKIAAVVFAFRILVTGLGTVHHDWSLMFALLAAASLLV 286

Query: 268 GVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNV------YGATLYSLAHAMFKGGLFL 321
           G + AI+Q N KR+LAY TVS MG+ILL    G V      Y A  Y+L  A   G L +
Sbjct: 287 GNLAAIMQTNIKRMLAYSTVSHMGFILLAFMAGAVGFAAGLYYAITYALMAAAGFGVLMV 346

Query: 322 GVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAK--SYLATTEKAII 379
                 +     DL  L    + L   + ++  +++G+   +G  AK    +A  ++  +
Sbjct: 347 LSDGDNECENISDLAGLNQHRVWLAFLMLLVMFSMAGIPPLMGFYAKFGVIMALLKQGYV 406

Query: 380 YAVSFGTAFSFSKLNYYL 397
           +   F    S     YYL
Sbjct: 407 WLSVFAVVMSLIGAFYYL 424


>gb|AAD52918.1|AF152244_5 (AF152244) NADH dehydrogenase subunit 4 [Acropora tenuis]
           Length = 475
           
 Score =  101 bits (250), Expect = 2e-20
 Identities = 84/308 (27%), Positives = 141/308 (45%), Gaps = 21/308 (6%)

Query: 77  LDWVSSTFLIAEFLVFGASSLYLVKRVTN-WKELSL-LLLMHSGLIGAFISKDYFNFYVF 134
           LD VS  F +   L+     L   K + + +KE  L LL + + L+G F+  D   FY+ 
Sbjct: 70  LDGVSLFFFVLTALLIPICILISWKSIKHLFKEFLLCLLFLEALLVGVFLVLDLLLFYLL 129

Query: 135 MELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASE 189
            E   +  + LI       +   A++ +   +   S  ++L L  IY  TG  + ++   
Sbjct: 130 FEGILIPMFLLIGVWGSREEKVRASYYFFFYTFAGSVFMLLGLFQIYSVTGTTDYQILLN 189

Query: 190 VGLRDDTPLRLAA---ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI 246
           + L   T   + A   +SL +K    P H+WLP AH  A    S IL+GI +K   YG +
Sbjct: 190 IKLPVTTQKWVLAGIFLSLAVKIPQIPFHIWLPQAHVEAPVSGSVILAGILLKLGGYGFL 249

Query: 247 LLS---NLGDLSFLKPFAIL----SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLST 299
             S         +  P  I+    ++ +G ++   Q + KRL+AY +V+ MG + LGL T
Sbjct: 250 RFSWPILPAASEYFAPLIIMLGVVAIIYGGLLTCRQVDFKRLIAYSSVAHMGLVPLGLFT 309

Query: 300 GNVYG---ATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAILS-LA 355
             + G   A    LAH      LF+ +  + +    + +KY     + + V + I+  L+
Sbjct: 310 HTIEGLVAAVFMMLAHGFVSSALFIAITYLYERHHTRLIKYYRGVTLTMPVFVCIMMVLS 369

Query: 356 ISGLGITI 363
           +S +GI +
Sbjct: 370 LSNMGIPL 377


>pir||S38323 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain N -
           Escherichia coli (strain AN387)
           Length = 476
           
 Score =  101 bits (249), Expect = 2e-20
 Identities = 105/367 (28%), Positives = 171/367 (45%), Gaps = 36/367 (9%)

Query: 64  VGGYPR-EIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGA 122
           +GG PR  I I + +D +S   ++   L+   + L   K +  ++    L LM   L  A
Sbjct: 54  LGGIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLMWILLANA 113

Query: 123 FISKDYFNFY--VFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIYFQTG 180
            I +  F     + + L  +  YA    +  EA+ KY +LS  AS  L+  + ++Y Q+G
Sbjct: 114 TIWRSLFLGIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQSG 173

Query: 181 YLN-VELASEVG---LRDDTPLR---LAAISLILKAGIFPLHVWLPDAHSNAKTYVSSIL 233
            L+ V L   +G   L D   L    L  + L  K  + P H+W PD +  A   VS+ L
Sbjct: 174 DLSFVALGKNLGDGMLNDALLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTFL 233

Query: 234 ---SGIAVKAPIYGLILLSNLGDLSFLK----PFAILSMAFGVIMAILQFNAKRLLAYHT 286
              S IA+   +  L L + +GD   ++     +   S+ FG +MA+ Q N KRLL Y +
Sbjct: 234 ATASKIAIFGVVMRLFLYAPVGDSEQVRRGAGDYRFASIIFGNLMALSQTNIKRLLGYSS 293

Query: 287 VSQMGYI---LLGLSTGNV-YGATLYSLAHAMFKGGLFLGVGAII-------DARKRKDL 335
           +S +GY+   L+ L TG +   A    LA  +F      GV +++       DA      
Sbjct: 294 ISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSY 353

Query: 336 KYLGSRNILLIVSIAILSLAISGLGITIGGVAKSY-LATTEKA----IIYAVSFGTAFSF 390
           + L     +L   + ++ L+++G+ +T+G + K Y LA   +A    ++ AV  G+A   
Sbjct: 354 RGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAIG- 412

Query: 391 SKLNYYL 397
             L YYL
Sbjct: 413 --LYYYL 417


>pir||S43882 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - garden
           lettuce mitochondrion >gi|976350|gb|AAA75278.1| (L12246)
           NADH dehydrogenase subunit 4 [Lactuca sativa]
           Length = 495
           
 Score =  101 bits (249), Expect = 2e-20
 Identities = 93/352 (26%), Positives = 164/352 (46%), Gaps = 43/352 (12%)

Query: 75  VGLDWVS------STFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDY 128
           +G+D +S      +TFLI   ++ G S +    R    + ++  L+    +I  F   D 
Sbjct: 84  LGIDGISLFFVILTTFLIPICILVGWSGM----RSYGKEYITASLIREFLMIAVFRMLDP 139

Query: 129 FNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGY-- 181
             FYV  E   +  + +I    S+ R+  AA++  L ++  S  ++LA+ +I FQTG   
Sbjct: 140 LLFYVLPESVLIPMFIIIGVWGSRQRKIKAAYQLFLYTLLGSVFMLLAILLILFQTGTTD 199

Query: 182 LNVELASEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
           L + L +E   R    L +A   S  +K  + P+H+WLP+AH  A T  S IL+GI +K 
Sbjct: 200 LQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKL 259

Query: 241 PIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI 293
             YG +  S        L    F+   + +++ +  +  + Q + K+++AY +V+ M  +
Sbjct: 260 GTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLV 319

Query: 294 LLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS--------RN 342
            +G+ + N+    G+ L  L+H +    LFL VG +    K + ++Y G           
Sbjct: 320 TIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYVRHKTRLVRYYGGLVSTMPNFST 379

Query: 343 ILLIVSIAILSLA-----ISGLGITIGGVAKSYLATTEKAIIYAVSFGTAFS 389
           I    ++A +SL      I    I +G   ++ L  T  A+   +  G A+S
Sbjct: 380 IFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAAL--GMILGAAYS 429


>gi|9695383 NADH dehydrogenase subunit 4 [Phytophthora infestans]
           >gi|6692636|gb|AAF24779.1|U17009_11 (U17009) NADH
           dehydrogenase subunit 4 [Phytophthora infestans]
           Length = 491
           
 Score =  101 bits (249), Expect = 2e-20
 Identities = 78/312 (25%), Positives = 151/312 (48%), Gaps = 21/312 (6%)

Query: 71  IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVT-NWKELSLL-LLMHSGLIGAFISKDY 128
           I   +GLD +S  F+I    +     L   + +T N KE  +L  ++   LI +F   D 
Sbjct: 73  INFYLGLDGISLFFIILTTFLIPICMLISYEIITKNIKEYFILYFILEFCLIISFSVLDI 132

Query: 129 FNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGYLN 183
             FY+F E   +  + +I    S++R+  A++ + + ++  S  + +A+  ++   G  +
Sbjct: 133 LIFYIFFESVLIPMFLIIGIWGSRERKIKASYLFFMYTLAGSLFMFIAIIHLFLTVGTTD 192

Query: 184 VELA--SEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
            ++   S      +    LA  +S  +K  + P HVWLP+AH  A T  S +L+GI +K 
Sbjct: 193 YQILYYSNFNFSYEKLYFLAFFLSFAVKVPMLPFHVWLPEAHVEAPTAGSVLLAGILLKL 252

Query: 241 PIYGLILL-------SNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI 293
             YG+I         + L    ++    ++S+ +  + AI Q + KR++AY +V+ M +I
Sbjct: 253 GSYGMIRFLVPLFPKATLYFTPYILVLCLISVIYASLTAIRQTDLKRIIAYASVAHMNFI 312

Query: 294 LLG---LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS-RNILLIVSI 349
           +LG   L+   + G+ +  ++H +   GLF  +G + D    + + Y G   + + +  I
Sbjct: 313 ILGIFSLTIQGLEGSIIQMISHGLVSSGLFFSIGCLYDRYHTRFINYYGGLAHTMPLFCI 372

Query: 350 AILSLAISGLGI 361
           A+    ++ + I
Sbjct: 373 ALFIYVLANMSI 384


>pir||S38992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - maize
           chloroplast
           Length = 510
           
 Score =  101 bits (248), Expect = 3e-20
 Identities = 85/324 (26%), Positives = 144/324 (44%), Gaps = 42/324 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V +E  ++ SY L     R     EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGA 189

Query: 164 ASYVLILALGMIY-----------FQTGYLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
           +S +L+     +Y              G +N ++ +  G+     L    + L  K  + 
Sbjct: 190 SSSILVYGFSWLYGLSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGLGFKLSLA 247

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
           P H W PD +  + T V + LS   V + +  L L + + D+ F          L+  AI
Sbjct: 248 PFHQWTPDVYEGSPTPVVAFLS---VTSKVAALALATRILDIPFYFSSNEWHLLLEILAI 304

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
           LSM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+        + + +F   + LG
Sbjct: 305 LSMILGNLLAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364

Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
             A I            +D   L +++  L +S+A+  L++ GL    G   K YL    
Sbjct: 365 TFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCG 424

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
            +  + + VS G   S   + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVLSIYYYL 448


>emb|CAC12088.1| (AL445066) NADH dehydrogenase, chain N related protein
           [Thermoplasma acidophilum]
           Length = 469
           
 Score =  101 bits (248), Expect = 3e-20
 Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 40/340 (11%)

Query: 67  YPREIGIEVGL--DWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFI 124
           Y    GI V    ++ +   LI+   +    + YL KR     E+    L+ S L   F+
Sbjct: 53  YSSAYGITVNKFSEYFAIVLLISALFISLPVAKYLGKR----SEIFYSALIFSALGMIFV 108

Query: 125 SKDYFNFYVFMELSAVSSYALIAS------QDREAAFKYLLLSMTASYVLILALGMIYFQ 178
           ++ +     F+   +VS    I S      ++ EA  KY      A+  +IL +   +F 
Sbjct: 109 AETWNLIIAFVAFESVSIMTYIMSAYGGKQRNLEATVKYFFTGTIATTFIILGIAFYFFS 168

Query: 179 TGYLNVELASEVGLRDDTPLRLAAISLIL----KAGIFPLHVWLPDAHSNAKTYVSSILS 234
            G   +  ++ +   D   + LA + L++    K  IFP+H W  DA+   +  VS+ LS
Sbjct: 169 VGTFTLSTSTTMVSADKPTMLLALLFLLIGFGFKLAIFPMHQWAIDAYDGTENDVSAFLS 228

Query: 235 GIAVKAPIYGLIL-LSNLGDLSFLKP-------FAILSMAFGVIMAILQFNAKRLLAYHT 286
               K   + ++L +  +G  S+  P        ++L+M +  + A+ Q N KRLLAY +
Sbjct: 229 -TGTKIMAFVIVLKIFLVGFSSYTAPVYFFFVILSVLTMTYANVAALSQNNVKRLLAYSS 287

Query: 287 VSQMGYILLGLST------GN--------VYGATLYSLAHAMFKGGLFLGVGAIIDARKR 332
           V+Q GY++L L+       GN        +     YSL +   KGG FL +  +      
Sbjct: 288 VAQAGYLILVLAVVSYVGIGNKPSVVDLAIASGMFYSLVYIFMKGGSFLAMNMVKQENVT 347

Query: 333 KD-LKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL 371
            D +  LG ++  +  S +IL L+++G+ +T G +AK +L
Sbjct: 348 FDAISGLGKKSPYVAASFSILLLSLAGIPLTGGFLAKYFL 387


>pir||S08621 probable hydrogenase 3 protein 3 - Escherichia coli
           >gi|41682|emb|CAA35548.1| (X17506) hycC [Escherichia
           coli] >gi|1093496|prf||2104213C hycC gene [Escherichia
           coli]
           Length = 608
           
 Score =  100 bits (247), Expect = 3e-20
 Identities = 75/264 (28%), Positives = 132/264 (49%), Gaps = 28/264 (10%)

Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALG 173
           ++ +  + A I+ +   F V  E+ A+ +   + S  +E    +  L    + +L +A  
Sbjct: 113 MLMAAAVCAVIASNLGMFVVMAEIMALCA-VFLTSNSKEGKL-WFALGRLGTLLLAIACW 170

Query: 174 MIYFQTGYLNVELAS----EVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYV 229
           +++ + G L++ L      ++ L  D  L L  I   L AGI PLH W+P AH+NA T  
Sbjct: 171 LLWQRYGTLDLRLLDMRMQQLPLGSDIWL-LGVIGFGLLAGIIPLHGWVPQAHANASTPA 229

Query: 230 SSILSGIAVKAPIYGLILLSNLGDLS------FLKPFAILSMAFGVIMAILQFNAKRLLA 283
           +++ S + +K  + G++ LS LG  +       L    +++   G + A+++ N +RLLA
Sbjct: 230 AALFSTVVMKIGLLGILTLSLLGGNAPLWWGIALLVLGMITAFVGGLYALVEHNIQRLLA 289

Query: 284 YHTVSQMGYILLGLSTG--------------NVYGATLYSLAHAMFKGGLFLGVGAIIDA 329
           YHT+  +G ILLGL  G               + G   + L H++FK  LFLG G++   
Sbjct: 290 YHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFR 349

Query: 330 RKRKDLKYLGS-RNILLIVSIAIL 352
              +D++ LG     + ++SIA+L
Sbjct: 350 TGHRDIEKLGGIGKKMPVISIAML 373


>sp|P32421|NU4C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4 >gi|282215|pir||S28891
           NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
           Synechocystis sp. (strain PCC 6803)
           >gi|47602|emb|CAA46289.1| (X65170) NADH dehydrogenase
           subunit  D [Synechocystis PCC6803]
           >gi|1001415|dbj|BAA10037.1| (D63999) NADH dehydrogenase
           subunit 4 [Synechocystis sp.]
           Length = 525
           
 Score =  100 bits (247), Expect = 3e-20
 Identities = 81/276 (29%), Positives = 133/276 (47%), Gaps = 29/276 (10%)

Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASY 166
           L+LLM+ G I  F  +D   F++  EL  V  Y +++     +   AA K++L +   S 
Sbjct: 117 LMLLMYGGQIAVFAVQDILLFFLVWELELVPVYLILSIWGGKKRLYAATKFILYTAGGSL 176

Query: 167 VLILALGMIYFQTGYLNVELASEVGLRD---DTPLRLAAISLI---LKAGIFPLHVWLPD 220
            ++LA G+     G +N    S +  +D   +  L L A  LI   +K  IFPLH WLPD
Sbjct: 177 FILLA-GLTLAFYGDVNTFDMSAIAAKDIPVNLQLLLYAGFLIAYGVKLPIFPLHTWLPD 235

Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL--------SFLKPFAILSMAFGVIMA 272
           AH  A      +L+GI +K   Y L+ + N+G L          L    ++++ +    +
Sbjct: 236 AHGEATAPAHMLLAGILLKMGGYALLRM-NVGMLPDAHAVFAPVLVILGVVNIIYAAFTS 294

Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIIDA 329
             Q N KR +AY ++S MG++L+GL++     + GA L  ++H +    LF  VGA  D 
Sbjct: 295 FAQRNLKRKIAYSSISHMGFVLIGLASFTDLGMSGAMLQMISHGLIGASLFFMVGATYDR 354

Query: 330 RKRKDLKYLG------SRNILLIVSIAILSLAISGL 359
                L  +G       +   +  + ++ SLA+ G+
Sbjct: 355 THTLMLDEMGGIGQKMKKGFAMWTACSLASLALPGM 390


>pir||DENTN4 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - common
           tobacco chloroplast >gi|225255|prf||1211235CP NADH
           dehydrogenase 4-like ORF 509B [Nicotiana tabacum]
           Length = 509
           
 Score =  100 bits (247), Expect = 3e-20
 Identities = 93/341 (27%), Positives = 154/341 (44%), Gaps = 46/341 (13%)

Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASY 166
           L+L M+SG IG+F S+D   F++  EL  +  Y L+     +    +A K++L +   S 
Sbjct: 126 LMLAMYSGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSATKFILYTAGGSV 185

Query: 167 VLILA-LGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLI-------LKAGIFPLHVWL 218
            L++  LG+  +  G     L  E  +    P+ L  I  I       +K+ I PLH WL
Sbjct: 186 FLLMGVLGLALY--GSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWL 243

Query: 219 PDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL----SFLKPFAILSMAFGVIMAIL 274
           PD H  A      +L+GI +K   YGLI + N+  L    S   P+ ++     +I A L
Sbjct: 244 PDTHGEAHYSTCMLLAGILLKMGAYGLIRI-NMELLPHAHSIFSPWLMIIGTIQIIYAAL 302

Query: 275 ----QFNAKRLLAYHTVSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAII 327
               Q N K+ +AY +VS MG+I++G+S+     + GA L  ++H      LF   G   
Sbjct: 303 TSLGQRNLKKRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTY 362

Query: 328 DARKRKDLKYLGS------RNILLIVSIAILSLAISGLG------ITIGGV--AKSYLAT 373
           D  +   L  +G       +   +  S ++ SLA+ G+       I   G+   + YL  
Sbjct: 363 DRIRLVYLDEMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLI 422

Query: 374 TEKAIIYAVSFGT------AFSFSKLNYYLWKGYGNEPTNF 408
            +  I + ++ G       + S S+  +Y +K +     +F
Sbjct: 423 PKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNAPKDSF 463


>gi|11467057 NADH dehydrogenase, subunit 4 [Acanthamoeba castellanii]
           >gi|3122488|sp|Q37375|NU4M_ACACA NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 4 >gi|1078743|pir||S53834 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
           Acanthamoeba castellanii mitochondrion
           >gi|562038|gb|AAD11826.1| (U12386) NADH dehydrogenase,
           subunit 4 [Acanthamoeba castellanii]
           Length = 497
           
 Score =  100 bits (247), Expect = 3e-20
 Identities = 78/312 (25%), Positives = 140/312 (44%), Gaps = 33/312 (10%)

Query: 75  VGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSL--------LLLMHSGLIGAFISK 126
           +G+D +S  FL+  F +     L       +W  +          L+ +   L   F   
Sbjct: 89  IGMDNISLLFLLLTFFLTPICILI------SWNSIKYRYNSFIICLIFITFILFNIFCVL 142

Query: 127 DYFNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTGY 181
           D   FY+F E   +  + LI    S+ R+  A ++    ++  S +++L + +IY     
Sbjct: 143 DLVFFYIFFESILIPMFILIGVWGSRQRKIHAVYQLFFYTLLGSLLMLLGILVIYSHIQT 202

Query: 182 LNVELASEVGLRDDTPLRLAA---ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAV 238
            ++ +           L L A    +  +K  +FP H+WLP+AH  A T  S IL+G+ +
Sbjct: 203 TDIRVLYNTNFSFYRQLILWASFFFAFCVKVPLFPFHIWLPEAHVEAPTVGSVILAGVLL 262

Query: 239 KAPIYGLILL-------SNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMG 291
           K   YGL+         +    L  +    +L + +     I Q + K+++AY +VS M 
Sbjct: 263 KLGTYGLLRFVIPIFCDATYFFLPLVYTLCLLGIIYTCCSTIRQVDLKKVIAYASVSHMS 322

Query: 292 YILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYL-GSRNILLIV 347
           +++LGL T N+    G+    L+H +   GLF  +G + D  K + L+Y  G  + + I 
Sbjct: 323 FVILGLFTSNIQGIGGSVFLMLSHGIVSSGLFFCIGCVYDRYKTRILRYYSGLVSTMPIF 382

Query: 348 SIAILSLAISGL 359
           S+ +  L +S +
Sbjct: 383 SLCLFILILSNI 394


>sp|P06262|NU4C_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4, CHLOROPLAST
           Length = 500
           
 Score =  100 bits (247), Expect = 3e-20
 Identities = 93/341 (27%), Positives = 154/341 (44%), Gaps = 46/341 (13%)

Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASY 166
           L+L M+SG IG+F S+D   F++  EL  +  Y L+     +    +A K++L +   S 
Sbjct: 117 LMLAMYSGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSATKFILYTAGGSV 176

Query: 167 VLILA-LGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLI-------LKAGIFPLHVWL 218
            L++  LG+  +  G     L  E  +    P+ L  I  I       +K+ I PLH WL
Sbjct: 177 FLLMGVLGLALY--GSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWL 234

Query: 219 PDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL----SFLKPFAILSMAFGVIMAIL 274
           PD H  A      +L+GI +K   YGLI + N+  L    S   P+ ++     +I A L
Sbjct: 235 PDTHGEAHYSTCMLLAGILLKMGAYGLIRI-NMELLPHAHSIFSPWLMIIGTIQIIYAAL 293

Query: 275 ----QFNAKRLLAYHTVSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAII 327
               Q N K+ +AY +VS MG+I++G+S+     + GA L  ++H      LF   G   
Sbjct: 294 TSLGQRNLKKRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTY 353

Query: 328 DARKRKDLKYLGS------RNILLIVSIAILSLAISGLG------ITIGGV--AKSYLAT 373
           D  +   L  +G       +   +  S ++ SLA+ G+       I   G+   + YL  
Sbjct: 354 DRIRLVYLDEMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLI 413

Query: 374 TEKAIIYAVSFGT------AFSFSKLNYYLWKGYGNEPTNF 408
            +  I + ++ G       + S S+  +Y +K +     +F
Sbjct: 414 PKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNAPKDSF 454


>gi|11466015 NADH dehydrogenase ND4 subunit [Nicotiana tabacum]
           >gi|2924279|emb|CAA77432.1| (Z00044) NADH dehydrogenase
           ND4 subunit [Nicotiana tabacum]
           Length = 500
           
 Score =  100 bits (247), Expect = 3e-20
 Identities = 93/341 (27%), Positives = 154/341 (44%), Gaps = 46/341 (13%)

Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASY 166
           L+L M+SG IG+F S+D   F++  EL  +  Y L+     +    +A K++L +   S 
Sbjct: 117 LMLAMYSGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSATKFILYTAGGSV 176

Query: 167 VLILA-LGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLI-------LKAGIFPLHVWL 218
            L++  LG+  +  G     L  E  +    P+ L  I  I       +K+ I PLH WL
Sbjct: 177 FLLMGVLGLALY--GSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWL 234

Query: 219 PDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL----SFLKPFAILSMAFGVIMAIL 274
           PD H  A      +L+GI +K   YGLI + N+  L    S   P+ ++     +I A L
Sbjct: 235 PDTHGEAHYSTCMLLAGILLKMGAYGLIRI-NMELLPHAHSIFSPWLMIIGTIQIIYAAL 293

Query: 275 ----QFNAKRLLAYHTVSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAII 327
               Q N K+ +AY +VS MG+I++G+S+     + GA L  ++H      LF   G   
Sbjct: 294 TSLGQRNLKKRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTY 353

Query: 328 DARKRKDLKYLGS------RNILLIVSIAILSLAISGLG------ITIGGV--AKSYLAT 373
           D  +   L  +G       +   +  S ++ SLA+ G+       I   G+   + YL  
Sbjct: 354 DRIRLVYLDEMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLI 413

Query: 374 TEKAIIYAVSFGT------AFSFSKLNYYLWKGYGNEPTNF 408
            +  I + ++ G       + S S+  +Y +K +     +F
Sbjct: 414 PKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNAPKDSF 454


>pir||F72619 probable NADH dehydrogenase (ubiquinone) chain 13 APE1415 -
           Aeropyrum pernix (strain K1) >gi|5105098|dbj|BAA80412.1|
           (AP000061) 513aa long hypothetical NADH dehydrogenase
           (ubiquinone) chain 13 [Aeropyrum pernix]
           Length = 513
           
 Score =  100 bits (247), Expect = 3e-20
 Identities = 105/355 (29%), Positives = 163/355 (45%), Gaps = 80/355 (22%)

Query: 109 LSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTA 164
           L L  +  S ++G   S ++  F +F+ELS +SS+ LIA       R  A  Y + +  A
Sbjct: 125 LILYSIFSSTMLGIAYSLNFLLFIIFLELSLLSSFLLIAFYGYGDRRRIALLYFVWTHIA 184

Query: 165 SYVLILALGMIYFQTGYLNVELASEVGLR---------DDTPLRLAAISLIL----KAGI 211
             + +L  G +Y+       ++A+  G R               +A +SL+L    K  +
Sbjct: 185 GALALL--GGLYYVIKTGTFDVATVEGGRIVYFSSPADRSVYAAIAGVSLLLGMLVKMAV 242

Query: 212 FPLHVWLPDAHSNAKTYVSSILS---------GIAVKAPIYGLILLSNLGDLSFLKPFAI 262
           F +H+WLP AH+ A T +S++LS         GIA  A  +   LL +L  L  L   A 
Sbjct: 243 FGVHMWLPYAHAEAPTPISALLSPNLIGLGGYGIARFAAAFYPWLLEDLKPL--LVGLAF 300

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGL 319
           +++ +G ++A+ Q + KRLLAY ++SQMGY+LL LST +  G   A+L  L HA+ K  L
Sbjct: 301 VTIVYGGLVALSQLDFKRLLAYSSISQMGYMLLALSTLHPLGFAAASLIFLGHAVGKAVL 360

Query: 320 FLGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAII 379
           F+  G  I           G RNI                   +GG+A+ Y  T   A+I
Sbjct: 361 FMTAGVFITEAH-------GLRNI-----------------ARMGGLARLYPLTAAAALI 396

Query: 380 ---YAVSFGTAFSF--------SKLNYYLWKGYGNEPTNFSILPSLTLGVLTVLV 423
              +      AF F        S LNY    GY +         +++LG+L +++
Sbjct: 397 GFLHLAGIPPAFGFWGELYLTLSVLNY---PGYSD---------AVSLGLLAIIL 439


>gb|AAK40663.1| NADH dehydrogenase subunit L  (NuoL) [Sulfolobus solfataricus]
           Length = 1148
           
 Score =  100 bits (246), Expect = 4e-20
 Identities = 95/368 (25%), Positives = 173/368 (46%), Gaps = 45/368 (12%)

Query: 47  LGVFLPMLLFP-LSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVK---- 101
           + + +P L+F  +     V  Y  + GI V     +  F+I   ++   S++Y ++    
Sbjct: 56  IAINIPFLVFRGIFENIFVSKYVGDFGIVVNN--FNYPFIITIIIITLLSAIYSLRYMEH 113

Query: 102 -----RVTNWK-ELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA----SQDR 151
                R ++W    +L  L    ++   +S +    Y+F+E+S +SS+ LIA       R
Sbjct: 114 KFDEERKSSWGLYYALYTLFALSMLYTVLSTNLLELYIFLEISLISSFLLIALYGYGDRR 173

Query: 152 EAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDT------PLRLAAISL 205
             +  Y + +   + +L+ ++ +I   TG +N+ + +       T         +A + +
Sbjct: 174 RISLMYFIWTHIGTILLLASIIVIGLSTGSMNIYVDAYTFANYSTISYGILVFIIAVVGM 233

Query: 206 ILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNL-GDLSFLKP----F 260
            +K      ++WLP AH  A T +S +LS   V   I+ +I+   L   +SFL P    +
Sbjct: 234 FVKGAQAGFNIWLPYAHGEAPTPISVLLSPNMVGLGIFVVIIYYYLFPTMSFLAPIFIAW 293

Query: 261 AILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG--------------NVYGAT 306
           AI++M +G I A+ Q + KR LAY +VSQMGY+LLG S                 +  + 
Sbjct: 294 AIITMIYGGINALAQKDFKRFLAYSSVSQMGYMLLGASIAFLSGLSNSIISLPIGILASI 353

Query: 307 LYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNIL--LIVSIAIL-SLAISGLGITI 363
           L  ++H   K  LF+  GA I     ++++ LG   +   L  ++A + +L + GL  TI
Sbjct: 354 LIYVSHGFGKAILFMSAGASITELNERNIEKLGGLYLSSPLHSTLAFIGALNLLGLPPTI 413

Query: 364 GGVAKSYL 371
           G ++++ L
Sbjct: 414 GLISEALL 421


>gi|11467595 NADH dehydrogenase, subunit 4 [Allomyces macrogynus]
           >gi|2147762|pir||S63659 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 4 - Allomyces macrogynus
           mitochondrion >gi|1236425|gb|AAC49242.1| (U41288) NADH
           dehydrogenase, subunit 4 [Allomyces macrogynus]
           Length = 482
           
 Score =  100 bits (246), Expect = 4e-20
 Identities = 85/316 (26%), Positives = 149/316 (46%), Gaps = 25/316 (7%)

Query: 75  VGLDWVSSTFLI-AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYV 133
           +G+D +S  F+I   FL             +    L  LL++ S LI  F+  D   FY+
Sbjct: 76  IGVDGISLFFVILTSFLTIPIILTPPYNGESPTAYLITLLILESMLIAVFVVLDLLLFYI 135

Query: 134 FMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYVLILALGMIYFQTG-----YLN 183
             E   +  + +I    S+ R+  AA+ + L ++  S  ++L + +IY+QTG     YL 
Sbjct: 136 CFETVLIPMFLIIGIWGSKVRKIMAAYHFFLYTLLGSLFMLLGIIVIYYQTGTTDYQYLL 195

Query: 184 VELAS-EVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAP 241
             L + E  L  +  L L   +S  +K  +FP++ WLP AHS A T  S IL+GI +K  
Sbjct: 196 AVLGTAESSLTRENLLWLTFFLSFAVKVPMFPVYGWLPLAHSEAPTGGSMILAGILLKLS 255

Query: 242 IYGLI-----LLSNLGD--LSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYIL 294
            YG +     L  N  +    F+   A++ + + +     Q + K ++AY ++S M  ++
Sbjct: 256 GYGFLRYSIPLFPNASNYFTPFVLTLAVIGILYSIFACFRQTDLKSVIAYSSISHMNIVI 315

Query: 295 LGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYL-GSRNILLIVSIA 350
             + + N+    GA    ++H +    LF  VGA+ D    + L Y  G   ++ + S+ 
Sbjct: 316 AAIFSDNIIGIEGALFMMISHGIVSSALFFCVGALYDRTGTRILAYYRGLTMVMPLFSLC 375

Query: 351 ILSLAISGLGITIGGV 366
              L ++ + +  GG+
Sbjct: 376 FFILILNNMAVP-GGI 390


>emb|CAB51628.2| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
           [Sinorhizobium meliloti]
           Length = 479
           
 Score = 99.8 bits (245), Expect = 6e-20
 Identities = 91/347 (26%), Positives = 152/347 (43%), Gaps = 39/347 (11%)

Query: 84  FLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISK---DYFNFYVFMELSAV 140
           F +A  L F  S  Y         E  +LLL    L+G  I     D  + YV +EL  +
Sbjct: 84  FYLATILTFFLSRKYAEIEGIGRSEYYVLLLF--ALVGMMIMASAIDLLSIYVGLELMVL 141

Query: 141 SSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEV--GLR 193
            +Y L        +  EAA KY++L   ++ + +  + +IY  TG   ++  +E   G  
Sbjct: 142 CTYVLTGFLRKERRSNEAALKYVILGAVSTAIFLYGVSLIYGLTGTTQLDRMAEAVSGGP 201

Query: 194 DDTPLRLAAI----SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLS 249
            D  L LA +     L+ K G  P H+W+PD +  A T +++ +S +A KA  + +IL  
Sbjct: 202 LDPALLLAVVFIVAGLVFKIGAVPFHMWVPDVYEGAPTTITAFMS-VAPKAAGFAVILRV 260

Query: 250 NLGDLS-------FLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG-- 300
            L  L         +   A+ +MA G  +A++Q N KRLLAY +++  G+ + G+  G  
Sbjct: 261 FLNPLVEASNAWIIVAAIAVATMALGSFVALVQDNFKRLLAYSSIAHAGFAIFGVVAGGQ 320

Query: 301 -NVYGATLYSLAHAMFKGGLFLGVGAIIDARKR-------KDLKYLGSRNILLIVSIAIL 352
             +    LY L +     G+F   GA+I  R         +D       +  L + + + 
Sbjct: 321 DGIASVMLYLLIYTFMNLGIF---GAVIMMRNGDFSGEVIEDYAGFAKFHPGLALLMLLY 377

Query: 353 SLAISGLGITIGGVAKSY--LATTEKAIIYAVSFGTAFSFSKLNYYL 397
             +++G+  T G  AK Y  +A  E+  +         S     +Y+
Sbjct: 378 LFSLAGIPPTAGFFAKFYVLVALVERGFVALAVIAVLLSVVSAYFYI 424


>sp|P29925|NQOD_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 13 (NADH DEHYDROGENASE 1,
           CHAIN 13) (NDH-1, CHAIN 13) >gi|478255|pir||I45456 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
           Paracoccus denitrificans >gi|150615|gb|AAA25599.1|
           (L02354) NADH dehydrogenase [Paracoccus denitrificans]
           Length = 513
           
 Score = 99.5 bits (244), Expect = 8e-20
 Identities = 87/370 (23%), Positives = 173/370 (46%), Gaps = 38/370 (10%)

Query: 5   IMVISPVIFSLLIYIFGTFRIEGTFR-ARFRLPLTYEVKALYLLGVFLPMLLFPLSRG-G 62
           I+   P++ ++++ +F   + E   R A++   LT    A +++ +F+     P + G  
Sbjct: 7   IITFLPIVAAIIMALFLRGQDEAAARNAKWLALLT--TTATFVISLFVLFRFDPANTGFQ 64

Query: 63  VVGGYPREIGI--EVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGL- 119
            V  +   +G+  ++G+D +S  F++    +   + L   +     KE  +  L+  GL 
Sbjct: 65  FVEDHAWIMGVCYKMGVDGISVLFVLLTTFMMPLTILSTWQVQDKVKEYMIAFLVLEGLM 124

Query: 120 IGAFISKDYFNFYVFMELSAVSSYALIA---SQDR-EAAFKYLLLSMTASYVLILALGMI 175
           IG F + D   FY+F E   +  + +I     +DR  A+FK+ L +   S ++++A+  +
Sbjct: 125 IGVFTALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMIAM 184

Query: 176 YFQTGYLNVELASEVGLRDDTPLRLAAISLI----------------LKAGIFPLHVWLP 219
           Y   G  ++          +   RL  ++++                +K  ++P+H WLP
Sbjct: 185 YRMAGTTDIPTLLTFDFPSEN-FRLLGMTVVGGMQMLLFLAFFASFAVKMPMWPVHTWLP 243

Query: 220 DAHSNAKTYVSSILSGIAVKAPIYGLILLS-------NLGDLSFLKPFAILSMAFGVIMA 272
           DAH  A T  S +L+ + +K   YG +  S       +     ++   + +++ +  ++A
Sbjct: 244 DAHVQAPTAGSVLLAAVLLKMGGYGFLRFSLPMFPVASGVAQPYVFWLSAIAIVYTSLVA 303

Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDA 329
           + Q + K+++AY +V+ MGY+ +G+   N   V GA    L+H    G LFL VG I D 
Sbjct: 304 LAQSDMKKVIAYSSVAHMGYVTMGVFAANQIGVDGAIFQMLSHGFISGALFLCVGVIYDR 363

Query: 330 RKRKDLKYLG 339
              +++   G
Sbjct: 364 MHTREIDAYG 373


>pir||S65076 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - barley
           chloroplast
           Length = 510
           
 Score = 99.5 bits (244), Expect = 8e-20
 Identities = 84/324 (25%), Positives = 143/324 (43%), Gaps = 42/324 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V +E  ++ SY L     R     EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGA 189

Query: 164 ASYVLILALGMIY-----------FQTGYLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
           +S +L+     +Y              G +N ++ +  G+     L    + L  K  + 
Sbjct: 190 SSSILVYGFSWLYGLSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGLGFKLSLA 247

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
           P H W PD +  + T V + LS   V + +  + L + + D+ F          L+  AI
Sbjct: 248 PFHQWTPDVYEGSPTPVVAFLS---VTSKVAAIALATRILDIPFYFSSNEWHLLLEILAI 304

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
           LSM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+        + + +F   + LG
Sbjct: 305 LSMILGNLLAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364

Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
             A I            +D   L  ++  L +S+A+  L++ GL    G   K YL    
Sbjct: 365 TFACIVLFGLRTGTDNIRDYAGLYMKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCG 424

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
            +  + + VS G   S   + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVLSIYYYL 448


>gb|AAA69233.1| (U29579) formate hydrogenlyase subunit 3 [Escherichia coli]
           Length = 608
           
 Score = 99.1 bits (243), Expect = 1e-19
 Identities = 74/264 (28%), Positives = 131/264 (49%), Gaps = 28/264 (10%)

Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALG 173
           ++ +  + A I+ +   F V  E+ A+ +   + S  +E    +  L    + +L +A  
Sbjct: 113 MLMAAAVCAVIASNLGMFVVMAEIMALCA-VFLTSNSKEGKL-WFALGRLGTLLLAIACW 170

Query: 174 MIYFQTGYLNVELAS----EVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYV 229
           +++ + G L++ L      ++ L  D  L L  I   L AGI PLH W+P AH+NA    
Sbjct: 171 LLWQRYGTLDLRLLDMRMQQLPLGSDIWL-LGVIGFGLLAGIIPLHGWVPQAHANASAPA 229

Query: 230 SSILSGIAVKAPIYGLILLSNLGDLSF------LKPFAILSMAFGVIMAILQFNAKRLLA 283
           +++ S + +K  + G++ LS LG  +       L    +++   G + A+++ N +RLLA
Sbjct: 230 AALFSTVVMKIGLLGILTLSLLGGNAXLWWGIALLVLGMITAFVGGLYALVEHNIQRLLA 289

Query: 284 YHTVSQMGYILLGLSTG--------------NVYGATLYSLAHAMFKGGLFLGVGAIIDA 329
           YHT+  +G ILLGL  G               + G   + L H++FK  LFLG G++   
Sbjct: 290 YHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFR 349

Query: 330 RKRKDLKYLGS-RNILLIVSIAIL 352
              +D++ LG     + ++SIA+L
Sbjct: 350 TGHRDIEKLGGIGKKMPVISIAML 373


>gi|7525085 NADH dehydrogenase ND4 [Arabidopsis thaliana]
           >gi|6686315|sp|P26288|NU4C_ARATH NADH-PLASTOQUINONE
           OXIDOREDUCTASE CHAIN 4, CHLOROPLAST
           >gi|5881746|dbj|BAA84437.1| (AP000423) NADH
           dehydrogenase ND4 [Arabidopsis thaliana]
           Length = 506
           
 Score = 99.1 bits (243), Expect = 1e-19
 Identities = 107/402 (26%), Positives = 188/402 (46%), Gaps = 57/402 (14%)

Query: 75  VGLDWVS-STFLIAEFLVFGAS-SLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFY 132
           +G+D +S  T L+  F+   A+ + + V R + +    L+L M+SG IG+F S+D   F+
Sbjct: 86  MGIDGLSIGTILLTGFITTLATLAAFPVTRDSRFFHF-LMLAMYSGQIGSFSSRDLLLFF 144

Query: 133 VFMELSAVSSYALIASQDRE----AAFKYLLLSMTAS-YVLILALGMIYFQTGY--LNVE 185
           +  EL  +  Y L++    +    +A K++L +  +S ++LI  LG+  + +    LN+E
Sbjct: 145 IMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLIGVLGISLYGSNEPTLNLE 204

Query: 186 LASEVGLRDDTPLRLAA-------ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAV 238
           L +        P+ L         I+  +K+ I PLH WLPD H  A      +L+GI +
Sbjct: 205 LLANKSY----PVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILL 260

Query: 239 KAPIYGLILLSNLGDL----SFLKPFAILSMAFGVIMAIL----QFNAKRLLAYHTVSQM 290
           K   YGL+ + N+  L    S   P+ ++     +I A      Q N K+ +AY +VS M
Sbjct: 261 KMGAYGLVRI-NMELLPHAHSMFSPWLLVVGTIQIIYAASTSPGQRNLKKRIAYSSVSHM 319

Query: 291 GYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNI---- 343
           G+I++G+S+     + GA L  ++H      LF   G   D  +   L  +G   I    
Sbjct: 320 GFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAISIPK 379

Query: 344 --LLIVSIAILSLAISGLG------ITIGGV--AKSYLATTEKAIIYAVSFG---TAFSF 390
              +   +++ SLA+ G+       I   G+  ++ Y   ++  II+ ++ G   T    
Sbjct: 380 IFTMFTILSMASLALPGMSGFIAEFIVFFGIITSQKYFLISKIFIIFVMAIGMILTPIYL 439

Query: 391 SKLNYYLWKGYG-NEPTNFSILPS------LTLGVLTVLVGI 425
             +   ++ GY      NFS   S      L++ +L  ++GI
Sbjct: 440 LSMLRQMFYGYKLINIKNFSFFDSGPRELFLSISILLPIIGI 481


>emb|CAB64689.1| (AJ235829) NADH dehydrogenase, putative [Anthocleista grandiflora]
           Length = 732
           
 Score = 99.1 bits (243), Expect = 1e-19
 Identities = 84/293 (28%), Positives = 136/293 (45%), Gaps = 33/293 (11%)

Query: 70  EIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAF 123
           +  +E+G  +D ++S  LI        V   S  Y+    +  K  + +    + ++G  
Sbjct: 80  DFSLELGYLIDPLTSIMLILITTVGITVLFYSDNYMAHDQSYLKFFTYMSFFSTSMLGLV 139

Query: 124 ISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQ 178
            S +    Y+F EL  +SSY LI           A  K  + +    + L+L +   Y+ 
Sbjct: 140 TSANLIQIYIFWELVGMSSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWI 199

Query: 179 TGYLNVELASEV-----GLRDDTPLRLAAISLILKAGI------FPLHVWLPDAHSNAKT 227
           TG    E   E+        +  PL L   +++L AG       FPLHVWLPDA     T
Sbjct: 200 TGSFEFEDLFEIVNNLISNNEVNPLFLTLCAVLLFAGSVAKSAQFPLHVWLPDA-MEGPT 258

Query: 228 YVSSILSGIAVKAPIYGLILLSNLGDLSFLKP--------FAILSMAFGVIMAILQFNAK 279
            +S+++    + A   G+ L++ L  L  + P         AI+++  G  +A+ Q + K
Sbjct: 259 PISALIHAATMVAA--GIFLVARLLPLFIVIPSIMNLISLIAIITVLLGATLALAQKDIK 316

Query: 280 RLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKR 332
           R LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G+II + +R
Sbjct: 317 RGLAYSTMSQLGYMMLALGMGSYRNALFHLITHAYSKALLFLGSGSIIHSMER 369


>emb|CAB65368.1| (AJ235831) NADH dehydrogenase, putative [Potalia resinifera]
           Length = 727
           
 Score = 99.1 bits (243), Expect = 1e-19
 Identities = 77/262 (29%), Positives = 123/262 (46%), Gaps = 27/262 (10%)

Query: 95  SSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQ 149
           S  Y+    +  K  + +    + ++G   S +    Y+F EL  +SSY LI        
Sbjct: 102 SDNYMAHDQSYLKFFTYMSFFSTSMLGLVTSANLIQIYLFWELVGMSSYLLIGFWFTRPL 161

Query: 150 DREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEV-----GLRDDTPLRLAAIS 204
              A  K  + +    + L+L +   Y+ TG    E   E+        +  PL L   +
Sbjct: 162 AANACQKAFVTNRVGDFCLLLGILGFYWITGSFEFEDLFEIVNNLISNNEVNPLFLTLCA 221

Query: 205 LILKAGI------FPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLK 258
           ++L AG       FPLHVWLPDA     T +S+++    + A   G+ L++ L  L  + 
Sbjct: 222 VLLFAGSVAKSAQFPLHVWLPDA-MEGPTPISALIHAATMVAA--GIFLVARLLPLFIVI 278

Query: 259 P--------FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSL 310
           P         AI+++  G  +A+ Q + KR LAY T+SQ+GY++L L  G+   A  + +
Sbjct: 279 PPIMNLISLIAIITVVLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNALFHLI 338

Query: 311 AHAMFKGGLFLGVGAIIDARKR 332
            HA  K  LFLG G+II + +R
Sbjct: 339 THAYSKALLFLGSGSIIHSMER 360


>gi|11466847 NADH dehydrogenase ND4 [Oryza sativa]
           >gi|128732|sp|P12127|NU4C_ORYSA NADH-PLASTOQUINONE
           OXIDOREDUCTASE CHAIN 4, CHLOROPLAST
           >gi|66181|pir||DERZN4 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 4 - rice chloroplast
           >gi|12050|emb|CAA33953.1| (X15901) NADH dehydrogenase
           ND4 [Oryza sativa] >gi|226670|prf||1603356CX NADH
           dehydrogenase ND4 [Oryza sativa]
           Length = 500
           
 Score = 98.7 bits (242), Expect = 1e-19
 Identities = 83/275 (30%), Positives = 133/275 (48%), Gaps = 26/275 (9%)

Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTAS- 165
           L+L M+SG IG F S+D   F++  EL  +  Y L++    +    +A K++L +   S 
Sbjct: 117 LMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSI 176

Query: 166 YVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLA-----AISLILKAGIFPLHVWLPD 220
           + LI  LGM  + +    ++L   +       L +       I+  +K  I PLH WLPD
Sbjct: 177 FFLIGVLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFLIAYAVKLPIIPLHTWLPD 236

Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSN--LGDLSFL-KPFAILSMAFGVIMA----I 273
            H  A      +L+GI +K   YGLI ++   L    +L  P+ ++  A  +I A    +
Sbjct: 237 THGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSL 296

Query: 274 LQFNAKRLLAYHTVSQMGYILLGL-STGNV--YGATLYSLAHAMFKGGLFLGVGAIIDAR 330
            Q N K+ +AY +VS MG+I++G+ S  N+   GA L  L+H      LF   G   D  
Sbjct: 297 GQRNFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRM 356

Query: 331 KRKDLKYLGSRNI------LLIVSIAILSLAISGL 359
           +   L+ LG  +I       +  S ++ SLA+ G+
Sbjct: 357 RLVYLEELGGASIPMPKIFTMFSSFSMASLALPGM 391


>sp|P16429|HYCC_ECOLI FORMATE HYDROGENLYASE SUBUNIT 3 (FHL SUBUNIT 3) (HYDROGENASE-3
           COMPONENT C) >gi|7446809|pir||G65052 hydrogenase (EC
           1.18.99.1) 3 chain 3 - Escherichia coli
           >gi|2367154|gb|AAC75765.1| (AE000356) membrane-spanning
           protein of hydrogenase 3 (part of FHL complex)
           [Escherichia coli K12]
           Length = 608
           
 Score = 98.7 bits (242), Expect = 1e-19
 Identities = 74/264 (28%), Positives = 131/264 (49%), Gaps = 28/264 (10%)

Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALG 173
           ++ +  + A I+ +   F V  E+ A+ +   + S  +E    +  L    + +L +A  
Sbjct: 113 MLMAAAVCAVIASNLGMFVVMAEIMALCA-VFLTSNSKEGKL-WFALGRLGTLLLAIACW 170

Query: 174 MIYFQTGYLNVELAS----EVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYV 229
           +++ + G L++ L      ++ L  D  L L  I   L AGI PLH W+P AH+NA    
Sbjct: 171 LLWQRYGTLDLRLLDMRMQQLPLGSDIWL-LGVIGFGLLAGIIPLHGWVPQAHANASAPA 229

Query: 230 SSILSGIAVKAPIYGLILLSNLGDLS------FLKPFAILSMAFGVIMAILQFNAKRLLA 283
           +++ S + +K  + G++ LS LG  +       L    +++   G + A+++ N +RLLA
Sbjct: 230 AALFSTVVMKIGLLGILTLSLLGGNAPLWWGIALLVLGMITAFVGGLYALVEHNIQRLLA 289

Query: 284 YHTVSQMGYILLGLSTG--------------NVYGATLYSLAHAMFKGGLFLGVGAIIDA 329
           YHT+  +G ILLGL  G               + G   + L H++FK  LFLG G++   
Sbjct: 290 YHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFR 349

Query: 330 RKRKDLKYLGS-RNILLIVSIAIL 352
              +D++ LG     + ++SIA+L
Sbjct: 350 TGHRDIEKLGGIGKKMPVISIAML 373


>sp|P93401|NU2M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2
           Length = 488
           
 Score = 98.7 bits (242), Expect = 1e-19
 Identities = 96/366 (26%), Positives = 160/366 (43%), Gaps = 50/366 (13%)

Query: 101 KRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDR-----EAAF 155
           +R   ++ + L+LL    ++    + D    Y+ +EL ++  Y L AS+ +     EA  
Sbjct: 107 ERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVLAASKRKSEFSTEAGL 166

Query: 156 KYLLLSMTASYVLILALGMIYFQTGYLNVELASEV-------GLRDD---TPLRLAAISL 205
           KYL+L   +S +L+    MIY  TG  + +  +++       G R       +   A+  
Sbjct: 167 KYLILGAFSSGILLFGCSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGF 226

Query: 206 ILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILL--------SNLGDLSFL 257
           + K    P H+W PD +  + T V++ LS IA K  I+  IL         + L  + F 
Sbjct: 227 LFKITAVPFHMWAPDIYEGSPTPVTAFLS-IAPKISIFANILRVFIYGSYGATLQQIFFF 285

Query: 258 KPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKG 317
              +I SM  G + A+ Q   KRLLAY ++  +GYI +G S G + G  + SL   +F  
Sbjct: 286 --CSIASMILGALAAMAQTKVKRLLAYSSIGHVGYICIGFSCGTIEG--IQSLLIGLFIY 341

Query: 318 GL-FLGVGAIIDARKRKDLKY------LGSRNILLIVSIAILSLAISGLGITIGGVAKSY 370
            L  +   AI+ A ++  +KY      L   N +L ++ +I   + +G+    G  +K Y
Sbjct: 342 ALTTINAFAIVLALRQTRVKYIADLGALAKTNPILAITFSITMFSYAGIPPLAGFCSKFY 401

Query: 371 L--ATTEKAIIYAVSFGTAFSFSKLNYYL-------------WKGYGNEPTNFSILPSLT 415
           L  A       +  S G   S     YY+             W  Y     N S+L ++T
Sbjct: 402 LFFAALGCGAYFLASVGVVTSVIGCFYYIRLVKRMFFDTPRTWILYEPMDRNKSLLLAMT 461

Query: 416 LGVLTV 421
              +T+
Sbjct: 462 SSFITL 467


>sp|O03060|NU4C_HORVU NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4, CHLOROPLAST
           >gi|2145424|emb|CAA72935.1| (Y12258) ndhD [Hordeum
           vulgare]
           Length = 500
           
 Score = 98.3 bits (241), Expect = 2e-19
 Identities = 89/280 (31%), Positives = 133/280 (46%), Gaps = 36/280 (12%)

Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLIL 170
           L+L M+SG IG F S+D   F++  EL  +  Y L++        K  L S T  ++L  
Sbjct: 117 LMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGG----KRRLYSAT-KFILYT 171

Query: 171 ALGMIYFQTGYLNVEL--ASEVGL------RDDTPLRLAA-------ISLILKAGIFPLH 215
           A G I+F  G L + L  ++E GL          P  L         I+  +K  I PLH
Sbjct: 172 AGGSIFFLIGVLGMGLYGSNEPGLDLERLINQSYPATLEILLYFGFLIAYAVKLPIIPLH 231

Query: 216 VWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSN--LGDLSFL-KPFAILSMAFGVIMA 272
            WLPD H  A      +L+GI +K   YGLI ++   L    +L  P+ ++  A  +I A
Sbjct: 232 TWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAIQIIYA 291

Query: 273 ----ILQFNAKRLLAYHTVSQMGYILLGL-STGNV--YGATLYSLAHAMFKGGLFLGVGA 325
               + Q N K+ +AY +VS MG+I++G+ S  N+   GA L  L+H      LF   G 
Sbjct: 292 ASTSLGQRNFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGT 351

Query: 326 IIDARKRKDLKYLGSRNI------LLIVSIAILSLAISGL 359
             D  +   L+ LG  +I       +  S ++ SLA+ G+
Sbjct: 352 ASDRMRLVYLEELGGISIPMPKIFTMFSSFSMASLALPGM 391


>sp|Q9ZD13|NUON_RICPR NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
           N) >gi|7432122|pir||H71657 NADH dehydrogenase
           (ubiquinone) (EC 1.6.5.3) I chain N RP537 - Rickettsia
           prowazekii >gi|3861086|emb|CAA14986.1| (AJ235272) NADH
           DEHYDROGENASE I CHAIN N (nuoN1) [Rickettsia prowazekii]
           Length = 458
           
 Score = 98.3 bits (241), Expect = 2e-19
 Identities = 91/333 (27%), Positives = 154/333 (45%), Gaps = 38/333 (11%)

Query: 69  REIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDY 128
           R IGI   +  +   F I   +++   S+ LV     ++ ++L+LL   G+  A  S+++
Sbjct: 63  RNIGISKSIILL---FTIVSLIIYRDYSI-LVGETLKFEFITLMLLSIVGIFVAISSRNF 118

Query: 129 FNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLILALGMIYFQTGYLN 183
              +  MEL+A++SYAL   +       E A KY +L    S + +  +  IY   G + 
Sbjct: 119 LLLFCGMELTALTSYALAGFKLNDIKSSEGALKYFILGSLVSCLSLFGISFIYGFGGSIQ 178

Query: 184 VELASEVGLRDDTPLRLAAI--------SLILKAGIFPLHVWLPDAHSNAKTYVSSILSG 235
            +      L +D+ ++   I        S+  K    PLH W+PD +  +   +SS+   
Sbjct: 179 FDDILHQ-LNNDSEIKPGLIIGIVLFLSSIFFKLASSPLHFWIPDVYEGSP--ISSVTYF 235

Query: 236 IAVKAPIYGLILLSNLGDL----------SFLKPFAILSMAFGVIMAILQFNAKRLLAYH 285
            A  + I  +I+L N+  L          + +K  AILSM FG   AI Q + KRL+AY 
Sbjct: 236 TAA-SKIGMVIVLLNISKLIIGNYYPINYNLIKIIAILSMLFGAFGAIRQTSLKRLMAYS 294

Query: 286 TVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLF----LGVGAIIDARKRKDLKYL 338
           T+  +GY+L+G+   N  G   A LY L +A+   G F    +  G  +D    K ++ +
Sbjct: 295 TILNIGYVLIGVLLHNQEGYKAALLYILIYAVVSIGFFTCLIMLFGKDVDNASFKTIEGI 354

Query: 339 GSRNILLIVSIAILSLAISGLGITIGGVAKSYL 371
              +  +   I+I+  ++ G+    G   K YL
Sbjct: 355 AETHKTIAALISIVMFSMIGIPPLTGFFGKYYL 387


>emb|CAA09817.1| (AJ011848) ndhD gene product [Hordeum vulgare]
           Length = 500
           
 Score = 98.3 bits (241), Expect = 2e-19
 Identities = 89/280 (31%), Positives = 133/280 (46%), Gaps = 36/280 (12%)

Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLIL 170
           L+L M+SG IG F S+D   F++  EL  +  Y L++        K  L S T  ++L  
Sbjct: 117 LMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGG----KRRLYSAT-KFILYT 171

Query: 171 ALGMIYFQTGYLNVEL--ASEVGL------RDDTPLRLAA-------ISLILKAGIFPLH 215
           A G I+F  G L + L  ++E GL          P  L         I+  +K  I PLH
Sbjct: 172 AGGSIFFLIGVLGMGLYGSNEPGLDLERLINQSYPATLEILLYFGFLIAYAVKLPIIPLH 231

Query: 216 VWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSN--LGDLSFL-KPFAILSMAFGVIMA 272
            WLPD H  A      +L+GI +K   YGLI ++   L    +L  P+ ++  A  +I A
Sbjct: 232 TWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAIQIIYA 291

Query: 273 ----ILQFNAKRLLAYHTVSQMGYILLGL-STGNV--YGATLYSLAHAMFKGGLFLGVGA 325
               + Q N K+ +AY +VS MG+I++G+ S  N+   GA L  L+H      LF   G 
Sbjct: 292 ASTSLGQRNFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGT 351

Query: 326 IIDARKRKDLKYLGSRNI------LLIVSIAILSLAISGL 359
             D  +   L+ LG  +I       +  S ++ SLA+ G+
Sbjct: 352 ASDRMRLVYLEELGGISIPMPKIFTMFSSFSMASLALPGM 391


>gb|AAG23678.1|AF288091_23 (AF288091) NADH dehydrogenase subunit 4 [Thraustochytrium aureum]
           Length = 488
           
 Score = 98.3 bits (241), Expect = 2e-19
 Identities = 73/246 (29%), Positives = 127/246 (50%), Gaps = 20/246 (8%)

Query: 113 LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA---SQDRE--AAFKYLLLSMTASYV 167
           L++ S ++  F + D   FY+F E   +  + +I    +++R+  A+F + L ++  S  
Sbjct: 118 LVIQSLILIVFTTIDLVIFYIFFESVLIPMFIIIGIWGTRERKVRASFLFFLYTLVGSLF 177

Query: 168 LILALGMIYFQTGYLNVELASEVGLR--DDTPLRLAA-ISLILKAGIFPLHVWLPDAHSN 224
           ++LA+ +I+F+ G  N  +  +          L  A  IS  +K  I P H+WLP+AH  
Sbjct: 178 ILLAILLIFFEVGSTNYFILIQYSFSFFHQKILWFAFFISFAVKVPILPFHIWLPEAHVE 237

Query: 225 AKTYVSSILSGIAVKAPIYGLILLS----NLGDLSFLKP----FAILSMAFGVIMAILQF 276
           A T  S +L+GI +K   YG I  S     LG L F KP     A +++ +  I A+ Q 
Sbjct: 238 APTAGSVMLAGILLKLGTYGFIRYSLPLFPLGTL-FYKPLIYVIASVAVVYTSITALRQT 296

Query: 277 NAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRK 333
           + KR++AY +V+ +   ++GL + N   + G+    +AH +  G LF+ VG + D    +
Sbjct: 297 DIKRVIAYASVAHINMTIIGLFSLNLVGIEGSIFQIIAHGVVSGALFICVGVLYDRYHSR 356

Query: 334 DLKYLG 339
            ++Y G
Sbjct: 357 LIQYYG 362


>pir||A70010 NADH dehydrogenase homolog yufT - Bacillus subtilis
           >gi|1934817|emb|CAB07942.1| (Z93937) unknown [Bacillus
           subtilis] >gi|2635656|emb|CAB15149.1| (Z99120) similar
           to NADH dehydrogenase [Bacillus subtilis]
           Length = 774
           
 Score = 97.9 bits (240), Expect = 2e-19
 Identities = 108/383 (28%), Positives = 175/383 (45%), Gaps = 63/383 (16%)

Query: 49  VFLPMLLF----PLSRGGVVGGYPREIGIEVGLDWVSSTF-----------LIAEFLVFG 93
           + LP+LLF    P+ R    G   R +     L+W+ S             L+   L+ G
Sbjct: 8   LILPVLLFIYFLPMIRMTQSGETLRSV-----LEWIPSLGINFTVYIDGLGLLFALLITG 62

Query: 94  ASSL-------YLVKRVTNWKELSLLLLMHSG-LIGAFISKDYFNFYVFMELSAVSSYAL 145
             SL       YL K         + LLM  G ++G  +  +    Y+F EL+++SS+ L
Sbjct: 63  IGSLVTLYSIFYLSKEKEQLGPFYVYLLMFMGAMLGVVLVDNVMVLYMFWELTSLSSFLL 122

Query: 146 IA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNV-ELASEVGLRDDTPLR 199
           I       + R  A K LL++++    ++    ++Y  T   ++ E+  +V L     L 
Sbjct: 123 IGYWYKREKSRYGAAKSLLITVSGGLCMLGGFILLYLITDSFSIREMVHQVQLIAGHELF 182

Query: 200 LAAISLIL-----KAGIFPLHVWLPDAHSNAKTYVSSIL-SGIAVKAPIYGLILLSNLGD 253
           + A+ LIL     K+  FP ++WLPDA   A T VS+ L S   VKA IY +   S +  
Sbjct: 183 IPAMILILLGAFTKSAQFPFYIWLPDA-MEAPTPVSAYLHSATMVKAGIYVIARFSPIFA 241

Query: 254 LS-----FLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYIL--LGLSTGNV-YGA 305
            S      +    + +M +G   A+ Q + K +LA+ TVSQ+G I+  LG+S   + YG 
Sbjct: 242 FSAQWFWIVSLVGLFTMVWGSFHAVKQTDLKSILAFSTVSQLGMIISMLGVSAAALHYGH 301

Query: 306 TLYS-----------LAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIAIL-- 352
           T Y            + HA FKG LF+ VG I      +D++ LG    ++ ++  I   
Sbjct: 302 TEYYTVAAMAAIFHLINHATFKGSLFMAVGIIDHETGTRDIRKLGGLMAIMPITFTISLI 361

Query: 353 -SLAISGLGITIGGVAKSYLATT 374
            + +++GL    G ++K    T+
Sbjct: 362 GTFSMAGLPPFNGFLSKEMFFTS 384


>gb|AAF03177.1|AF110138_9 (AF110138) NADH dehydrogenase subunit 2 [Nephroselmis olivacea]
           Length = 496
           
 Score = 97.9 bits (240), Expect = 2e-19
 Identities = 89/334 (26%), Positives = 153/334 (45%), Gaps = 35/334 (10%)

Query: 98  YLVKRVTNWKELSLLLLMHSGLIGAFISK-DYFNFYVFMELSAVSSYALIASQ-----DR 151
           YL ++  +  E  +L+L  +  +   +S  D+ + Y+ +EL ++  Y L AS+       
Sbjct: 106 YLKQKSFHAFEYVILILFSTCSMLIMVSAYDFLSMYLAIELQSLCFYVLAASKRSSEFST 165

Query: 152 EAAFKYLLLSMTASYVLILALGMIYFQTGYLNV-ELASEVGLRDDTPLRLAA-------- 202
           EA  KY +LS  AS +++    MIY  TG  N  EL          P  L++        
Sbjct: 166 EAGLKYFILSAFASGIILFGCSMIYGLTGITNFGELVIFFTGNAAIPFHLSSGILLGILF 225

Query: 203 --ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI---LLSNLGDL--- 254
             + L+ K    P H+W PD +  + T V++  + I  K  I GL    LL +  DL   
Sbjct: 226 ISVGLLFKLTAAPFHMWAPDVYEGSPTPVTAFFA-IVPKLAILGLFIRFLLFSCYDLMNV 284

Query: 255 --SFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYS 309
             S +   ++ SM  G + A+ Q   KR+LA+ ++  +GYIL+G + G + G     LY 
Sbjct: 285 CQSIIIFCSLASMMIGALAALSQKRIKRMLAFSSIGHIGYILMGFACGTIDGMQSLLLYM 344

Query: 310 LAHAMFKGGLFLGVGAI----IDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGG 365
           + ++    G F  V ++       +  +D   LG  N ++ V+++++  +++G+    G 
Sbjct: 345 VIYSFMTIGAFAVVLSLQHQSPSMKYIEDFTMLGKMNPIIAVTMSMILFSMAGIPPLAGF 404

Query: 366 VAKSY--LATTEKAIIYAVSFGTAFSFSKLNYYL 397
            AK Y  LA  E    +  + G   S     YY+
Sbjct: 405 FAKYYIFLAAIESGWYWLATIGVLTSVISCFYYI 438


>emb|CAB65021.1| (AJ235830) NADH dehydrogenase, putative [Fagraea sp.]
           Length = 721
           
 Score = 97.9 bits (240), Expect = 2e-19
 Identities = 77/262 (29%), Positives = 122/262 (46%), Gaps = 27/262 (10%)

Query: 95  SSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQ 149
           S  Y+    +  K  + +    + ++G   S +    Y+F EL  +SSY LI        
Sbjct: 100 SDNYMAHDQSYLKFFTYMSFFSTSMLGLVTSANLIQIYIFWELVGMSSYLLIGFWFTXPL 159

Query: 150 DREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEV-----GLRDDTPLRLAAIS 204
              A  K  + +    + L+L +   Y+ TG    E   E+           PL L   +
Sbjct: 160 AANACQKAFVTNRIGXFGLLLGILGFYWITGXFEFEDLFEIVNNLISNNQVNPLFLTLCA 219

Query: 205 LILKAGI------FPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLK 258
           ++L AG       FPLHVWLPDA     T +S+++    + A   G+ L++ L  L  + 
Sbjct: 220 VLLFAGSVAKSAQFPLHVWLPDA-MEGPTPISALIHAATMVAA--GIFLVARLLPLFIVI 276

Query: 259 P--------FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSL 310
           P         AI+++  G  +A+ Q + KR LAY T+SQ+GY++L L  G+   A  + +
Sbjct: 277 PSIMNLISLIAIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNALFHLI 336

Query: 311 AHAMFKGGLFLGVGAIIDARKR 332
            HA  K  LFLG G+II + +R
Sbjct: 337 THAYSKALLFLGSGSIIHSMER 358


>gi|11467101 nad2 [Marchantia polymorpha] >gi|462764|sp|P26846|NU2M_MARPO
           NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2
           >gi|282789|pir||S25943 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 2 - liverwort (Marchantia polymorpha)
           mitochondrion >gi|786186|gb|AAC09399.1| (M68929) nad2
           [Marchantia polymorpha]
           Length = 489
           
 Score = 97.5 bits (239), Expect = 3e-19
 Identities = 104/409 (25%), Positives = 184/409 (44%), Gaps = 55/409 (13%)

Query: 6   MVISPVIF----SLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRG 61
           + + P IF    ++++ I+G   +  T +     PL   V  L LL V + +LL      
Sbjct: 7   LALFPEIFLINATIILLIYGV--VFSTSKKYDYPPLVRNVGWLGLLSVLITILL------ 58

Query: 62  GVVGGYPREIGIEVGLDWV--SSTFLIAEFLVFGASSLYLV-------KRVTNWKELSLL 112
            V  G P  +   V  + +  + T+    FL+   +S  ++       + +  ++ + L+
Sbjct: 59  -VAVGSPLAVANLVYNNLIIDNFTYFCQIFLLLSTASTMVMCLDYFKQESLNAFESIVLI 117

Query: 113 LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYV 167
           LL    ++    + D    Y+ +EL ++  Y + AS+       EA  KY +L   +S +
Sbjct: 118 LLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRDSEFSTEAGLKYFILGAFSSGI 177

Query: 168 LILALGMIYFQTGYLNVELASEVGLRDDTPLRLA------------AISLILKAGIFPLH 215
           L+    MIY  TG  N E  +++    +  L  A            A+  + K    P H
Sbjct: 178 LLFGCSMIYGFTGVTNFEELAKIFTGYEITLFGAQSSGIFMGILFIAVGFLFKITAVPFH 237

Query: 216 VWLPDAHSNAKTYVSSILSGIAVKAPIYGLIL---LSNLGDLSFLKPF---AILSMAFGV 269
           +W PD +  + T V++  S IA K  I   +L   + +  D ++ + F   +I SM  G 
Sbjct: 238 MWAPDVYEGSPTIVTAFFS-IAPKISILANMLRVFIYSFYDPTWQQLFFFCSIASMILGA 296

Query: 270 IMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLF-LGVGAIID 328
           + A+ Q   KRLLAY ++  +GY+L+G S G + G  + SL   +F   L  + V AI+ 
Sbjct: 297 LAAMAQNKVKRLLAYSSIGHVGYLLIGFSCGTIEG--IQSLLIGIFIYVLMTVNVFAIVL 354

Query: 329 ARKRKDLKY------LGSRNILLIVSIAILSLAISGLGITIGGVAKSYL 371
           A ++   KY      L   N +L ++++I   + +G+    G  +K YL
Sbjct: 355 ALRQNRFKYIADLGALAKTNPILAITLSITMFSYAGIPPLAGFCSKFYL 403


>emb|CAB94828.1| (AJ236250) NADH dehydrogenase subunit F [Anthocleista grandiflora]
           Length = 691
           
 Score = 97.5 bits (239), Expect = 3e-19
 Identities = 83/293 (28%), Positives = 135/293 (45%), Gaps = 33/293 (11%)

Query: 70  EIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAF 123
           +  +E+G  +D ++S  LI        V   S  Y+    +  K  + +    + ++G  
Sbjct: 69  DFSLELGYLIDPLTSIMLILITTVGITVLFYSDNYMAHDQSYLKFFTYMSFFSTSMLGLV 128

Query: 124 ISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQ 178
            S +    Y+F EL  +SSY LI           A  K  + +    + L+L +   Y+ 
Sbjct: 129 TSANLIQIYIFWELVGMSSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWI 188

Query: 179 TGYLNVELASEV-----GLRDDTPLRLAAISLILKAGI------FPLHVWLPDAHSNAKT 227
           TG    E   E+        +  PL L   +++L AG       FPLHVWLPDA     T
Sbjct: 189 TGSFEFEDLFEIVNNLISNNEVNPLFLTLCAVLLFAGSVAKSAQFPLHVWLPDA-MEGPT 247

Query: 228 YVSSILSGIAVKAPIYGLILLSNLGDLSFLKP--------FAILSMAFGVIMAILQFNAK 279
            +S+++    + A   G+ L++ L  L  + P         AI+++  G  +A+ Q + K
Sbjct: 248 PISALIHAATMVAA--GIFLVARLLPLFIVIPSIMNLISLIAIITVLLGATLALAQKDIK 305

Query: 280 RLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKR 332
           R LAY T+ Q+GY++L L  G+   A  + + HA  K  LFLG G+II + +R
Sbjct: 306 RGLAYSTMXQLGYMMLALGMGSYRNALFHLITHAYSKALLFLGSGSIIHSMER 358


>sp|P77437|HYFF_ECOLI HYDROGENASE-4 COMPONENT F >gi|7466379|pir||E65024 hypothetical
           protein b2486 - Escherichia coli (strain K-12)
           >gi|1616955|gb|AAB88568.1| (M63654) Hyf F [Escherichia
           coli] >gi|1788831|gb|AAC75539.1| (AE000335) hydrogenase
           4 membrane subunit [Escherichia coli K12]
           >gi|1805545|dbj|BAA16374.1| (D90877) FORMATE
           HYDROGENLYASE SUBUNIT 3 (FHL SUBUNIT 3) (HYDROGENASE 3,
           SUBUNIT 3). [Escherichia coli]
           Length = 526
           
 Score = 97.1 bits (238), Expect = 4e-19
 Identities = 99/372 (26%), Positives = 171/372 (45%), Gaps = 51/372 (13%)

Query: 5   IMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLL-FPLSRGGV 63
           +++++P++FSLL +           R R RL  T  V  L+ LG+ L ++L   + +   
Sbjct: 9   LLLLTPLLFSLLCF---------ACRKR-RLSATRTVTVLHSLGITLLLILALWVVQTAA 58

Query: 64  VGGYPREIGIEVGLDWVSSTFL----IAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGL 119
             G     G+ + +D +   FL    +  FL    S  Y+   V + +   + L  + G 
Sbjct: 59  DAGEIFAAGLWLHIDGLGGLFLAILGVIGFLTGIYSIGYMRHEVAHGELSPVTLCDYYGF 118

Query: 120 IGAFI--------SKDYFNFYVFMELSAVSSYALIASQDR----EAAFKYLLLSMTASYV 167
              F+        S +    +  +E + +SS  L+    +    EAA+KY+++       
Sbjct: 119 FHLFLFTMLLVVTSNNLIVMWAAIEATTLSSAFLVGIYGQRSSLEAAWKYIIICTVGVAF 178

Query: 168 LILALGMIYFQTGYL--NVELA---SEV----GLRDDTPLRLAAISLIL----KAGIFPL 214
            +    ++Y     +    E+A   SEV     L D T + LA + L++    K G+FP+
Sbjct: 179 GLFGTVLVYANAASVMPQAEMAIFWSEVLKQSSLLDPTLMLLAFVFLLIGFGTKTGLFPM 238

Query: 215 HVWLPDAHSNAKTYVSSILSGIAVKAPI-----YGLILLSNLGD---LSFLKPFAILSMA 266
           H WLPDAHS A + VS++LS + +   +     Y +I+   +G       L  F +LS+A
Sbjct: 239 HAWLPDAHSEAPSPVSALLSAVLLNCALLVLIRYYIIICQAIGSDFPNRLLLIFGMLSVA 298

Query: 267 FGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG---NVYGATLYSLAHAMFKGGLFLGV 323
                 ++Q + KRLLAY +V  MG + + L  G    ++ A L+ L H++ K  LF G 
Sbjct: 299 VAAFFILVQRDIKRLLAYSSVENMGLVAVELGIGGPLGIFAALLHILNHSLAKTLLFCGS 358

Query: 324 GAIIDARKRKDL 335
           G ++     +DL
Sbjct: 359 GNVLLKYGTRDL 370


>gi|11466676 ndh2 [Marchantia polymorpha] >gi|128656|sp|P06257|NU2C_MARPO
           NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 2, CHLOROPLAST
           >gi|66151|pir||DELVN2 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 2 - liverwort (Marchantia polymorpha)
           chloroplast >gi|453589|emb|CAA28058.1| (X04465) ndh2
           [Marchantia polymorpha]
           Length = 501
           
 Score = 96.7 bits (237), Expect = 5e-19
 Identities = 93/324 (28%), Positives = 142/324 (43%), Gaps = 43/324 (13%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           L+ ++ + + G F+  + D    +V +E  ++ SY L     R     EAA KYLL+  T
Sbjct: 113 LIFILTATVGGMFLCGANDLVTIFVSLECLSLCSYLLCGYTKRDIRSNEAAIKYLLIGGT 172

Query: 164 ASYVLILALGMIY-----------FQTGYLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
           +S +L      +Y              G LN E  +  G           + L  K  + 
Sbjct: 173 SSSILAYGFSWLYGLSGGETNIQKITNGLLNAETYNSSGTF--IAFICILVGLAFKLSLV 230

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
           P H W PD +  + T V + LS   V + I GL L + + ++ F          L+  AI
Sbjct: 231 PFHQWTPDIYEGSPTPVVAFLS---VTSKIAGLALATRILNILFSFSPNEWKIFLEILAI 287

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
           LSM  G ++AI Q + KR+LAY ++SQ+GYIL+GL TG++ G T  ++ +  F   + LG
Sbjct: 288 LSMILGNLVAITQTSMKRMLAYSSISQIGYILIGLITGDLKGYTSMTI-YVFFYIFMNLG 346

Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
             A I            +D   L  ++ LL  S+ +  L++ GL    G   K YL    
Sbjct: 347 TFACIILYSLRTGTDNIRDYAGLYIKDPLLSFSLTLCLLSLGGLPPLTGFFGKLYLFWCG 406

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
            +      V      S   L YYL
Sbjct: 407 WQSGFYLLVFIALITSVISLYYYL 430


>gb|AAA84290.1| (L36400) NADH dehydrogenase subunit [Gentiana procera]
           Length = 695
           
 Score = 96.7 bits (237), Expect = 5e-19
 Identities = 76/262 (29%), Positives = 123/262 (46%), Gaps = 27/262 (10%)

Query: 95  SSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQ 149
           S  Y+    +  K  + +    + ++G   S +    Y+F EL  +SSY LI        
Sbjct: 103 SDNYMAHDQSYLKFFTYMSFFSTSMLGLVTSANLIQIYIFWELVGMSSYLLIGFWFTRPL 162

Query: 150 DREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLR-----DDTPLRLAAIS 204
              A  K  + +    + L+L +   Y+ TG    E   E+        +  PL L   +
Sbjct: 163 AANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFEDLFEIVNNLIFNNEVNPLFLTLCA 222

Query: 205 LIL------KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLK 258
           ++L      K+  FPLHVWLPDA     T +S+++    + A   G+ L++ L  L  + 
Sbjct: 223 VLLFVGSVAKSAQFPLHVWLPDA-MEGPTPISALIHAATMVAA--GIFLVARLLPLFIVI 279

Query: 259 P--------FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSL 310
           P         AI+++  G  +A+ Q + KR LAY T+SQ+GY++L L  G+   A  + +
Sbjct: 280 PPIMNLISLIAIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNALFHLI 339

Query: 311 AHAMFKGGLFLGVGAIIDARKR 332
            HA  K  LFLG G+II + +R
Sbjct: 340 THAYSKALLFLGSGSIIHSMER 361


>sp|P33608|NUON_ECOLI NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
           14) (NUO14) >gi|7431990|pir||B64999 NADH dehydrogenase
           (ubiquinone) (EC 1.6.5.3) I chain N - Escherichia coli
           >gi|1788612|gb|AAC75336.1| (AE000317) NADH dehydrogenase
           I chain N [Escherichia coli K12]
           >gi|1799634|dbj|BAA16103.1| (D90858) NADH DEHYDROGENASE
           I CHAIN N (EC 1.6.5.3) (NADH-UBIQUINONE OXIDOREDUCTASE
           CHAIN 14) (NUO14). [Escherichia coli]
           >gi|1799636|dbj|BAA16104.1| (D90859) NADH DEHYDROGENASE
           I CHAIN N (EC 1.6.5.3) (NADH-UBIQUINONE OXIDOREDUCTASE
           CHAIN 14) (NUO14). [Escherichia coli]
           Length = 425
           
 Score = 96.7 bits (237), Expect = 5e-19
 Identities = 88/295 (29%), Positives = 143/295 (47%), Gaps = 33/295 (11%)

Query: 133 VFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLN-VELASEVG 191
           + + L  +  YA    +  EA+ KY +LS  AS  L+  + ++Y Q+G L+ V L   +G
Sbjct: 75  ISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQSGDLSFVALGKNLG 134

Query: 192 LRD-DTPLRLAAISLIL-----KAGIFPLHVWLPDAHSNAKTYVSSIL---SGIAVKAPI 242
               + PL LA   L++     K  + P H+W PD +  A   VS+ L   S IA+   +
Sbjct: 135 DGMLNEPLLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVV 194

Query: 243 YGLILLSNLGDLSFLKP----FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI---LL 295
             L L + +GD   ++      A  S+ FG +MA+ Q N KRLL Y ++S +GY+   L+
Sbjct: 195 MRLFLYAPVGDSEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALI 254

Query: 296 GLSTGNV-YGATLYSLAHAMFKGGLFLGVGAII-------DARKRKDLKYLGSRNILLIV 347
            L TG +   A    LA  +F      GV +++       DA      + L     +L  
Sbjct: 255 ALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAA 314

Query: 348 SIAILSLAISGLGITIGGVAKSY-LATTEKA----IIYAVSFGTAFSFSKLNYYL 397
            + ++ L+++G+ +T+G + K Y LA   +A    ++ AV  G+A     L YYL
Sbjct: 315 VMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAIG---LYYYL 366


>emb|CAB59333.1| (AJ236309) NADH dehydrogenase subunit F [Spermacoce assurgens]
           Length = 725
           
 Score = 96.7 bits (237), Expect = 5e-19
 Identities = 86/315 (27%), Positives = 151/315 (47%), Gaps = 46/315 (14%)

Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILA 171
           + ++G  IS ++   Y+F EL  VSSY LI           A  K  + +    + L+L 
Sbjct: 133 TSMLGLVISSNFIQIYIFWELIGVSSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLG 192

Query: 172 LGMIYFQTGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVWLPD 220
           +   ++ TG        E+   L  D  + L  ++L         + K+  FPLHVWLPD
Sbjct: 193 ILGFFWITGSFEFRDLFEILNNLILDNEVNLGFVTLCAVLLFAGAVAKSAQFPLHVWLPD 252

Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGVIMA 272
           A     T +S+++    + A   G+ L++ L  L  + P+         I+++  G  +A
Sbjct: 253 A-MEGPTPISALIXAATMVAA--GIFLVARLLPLFIVIPYIMNFISLVGIITLLLGATLA 309

Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA--- 329
           + Q + KR LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G++I +   
Sbjct: 310 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSVIHSMET 369

Query: 330 ------RKRKDLKYLG--------SRNILLIVSIAILSL-AISGLGITIGGVAKSYLATT 374
                 +K +++  +G        +++  LI ++++  +  ++        +A S+L +T
Sbjct: 370 VVGYSPQKSQNIALMGGLTKHGSITKSTFLIGTLSLCGIPPLACFWSKDEILADSWLYST 429

Query: 375 EKAIIYAVSFG-TAF 388
             AII +V+ G TAF
Sbjct: 430 XFAIIASVTAGLTAF 444


>gb|AAF03771.1| (AF147712) NADH dehydrogenase subunit [Hydrostachys multifida]
           Length = 704
           
 Score = 96.7 bits (237), Expect = 5e-19
 Identities = 93/358 (25%), Positives = 160/358 (43%), Gaps = 52/358 (14%)

Query: 10  PVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYP- 68
           P++  + +++F T        AR  L   +  +++ LL + + +    LS   +   Y  
Sbjct: 11  PILIGVGLFLFPT--------ARKNLRRVWAFQSILLLSIAM-LFSIDLSIHQITNDYSY 61

Query: 69  ---------REIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLL 113
                     ++ +E+G  +D ++S  LI       LV   S  Y+       +  S + 
Sbjct: 62  QYVWSWVINNDLSLELGFLIDPLTSIMLILITTVGILVLIYSDKYMSHDQGYLRFFSYMS 121

Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVL 168
           L  + ++G   S +    YVF EL  + SY LI           A  K  + +    + L
Sbjct: 122 LFSTSMLGLVTSSNLLQIYVFWELVGMCSYLLIGFWFTRPLAASACQKAFVTNRVGDFGL 181

Query: 169 ILALGMIYFQTGYLN----VELASEVGLRDDTPLRLAAISLIL-------KAGIFPLHVW 217
           +L +   Y+ TG       VE+ +++  +++  L    I  +L       K+  FPLHVW
Sbjct: 182 LLGILGFYWLTGSFEFRSLVEIITKLISQNEINLLFLTICAVLVFAGSVAKSAQFPLHVW 241

Query: 218 LPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAF--------GV 269
           LPDA     T +S+++    + A   G+ L++ L  L  + P  +  +AF        G 
Sbjct: 242 LPDA-MEGPTPISALIHAATMVAA--GIFLVARLFPLFIIIPHILKLIAFTGILTVFLGA 298

Query: 270 IMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
            +A+ Q + KR LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G++I
Sbjct: 299 TLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSVI 356


>pir||A75390 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 DR1494
           [similarity] - Deinococcus radiodurans (strain R1)
           >gi|6459251|gb|AAF11057.1|AE001993_7 (AE001993) NADH
           dehydrogenase I, L subunit [Deinococcus radiodurans]
           Length = 645
           
 Score = 96.7 bits (237), Expect = 5e-19
 Identities = 99/332 (29%), Positives = 155/332 (45%), Gaps = 36/332 (10%)

Query: 153 AAFKYLLLSMTASYVLILALGMIYFQTGYLNV-ELASEV-GLR-DDTPLRLAAISLIL-- 207
           AA K  +++       +L + ++Y   G L++ ELA +  G R   + + LA + L++  
Sbjct: 184 AARKAFIMNRIGDLGFMLGMFLLYKLYGTLSIPELAGQAAGTRVAQSAIELACLFLLVGA 243

Query: 208 --KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI--- 262
             K+G  PL  WLPDA +      + I +   V A +Y   L++    L  L P A    
Sbjct: 244 VGKSGQLPLTTWLPDAMAGPTPVSALIHAATMVTAGVY---LVTRSHFLYELAPVASNWV 300

Query: 263 -----LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKG 317
                L+  +G + A+ Q + K++LAY TVSQ+GY+ + +  G       + L HA FK 
Sbjct: 301 AWVGGLTALYGALSALNQHDIKKILAYSTVSQLGYMFMAVGLGAYSAGVFHLLTHAFFKA 360

Query: 318 GLFLGVGAIIDA-RKRKDLKYLGS-RNILLIVSIAILS--LAISGLGITIGGVAKSYL-- 371
            LFL  GA+I A  + +D++ +G  R  +    +A L   LAISG+ I  G  +K  +  
Sbjct: 361 LLFLCAGAVIHALHEEQDVRAMGGMRRFMPFTHVAALMGVLAISGIPIWSGFFSKDAILA 420

Query: 372 -ATTEKAIIYAVSFG----TAFSFSKLNYYLWKG-YGNE---PTNFSILPSLTLGVLTVL 422
            A  +   +Y +  G    TAF   +  + +W+G Y  +   P     L    LGVL  L
Sbjct: 421 AAWAQSPWLYVIGLGVALLTAFYMGRWYFLVWRGEYRGQVAHPHEADGLMRFPLGVLAAL 480

Query: 423 VGIELGGKLSKYDLLIPLAFLTFYALRGYLTR 454
               LGG L+     +P   L  +A   YL R
Sbjct: 481 A--TLGGFLN-IPAFLPSLGLPKHAFDTYLGR 509


>gb|AAF65739.1|AF228525_9 (AF228525) F420H2 dehydrogenase subunit FpoL [Methanosarcina mazei]
           Length = 672
           
 Score = 96.7 bits (237), Expect = 5e-19
 Identities = 111/405 (27%), Positives = 175/405 (42%), Gaps = 69/405 (17%)

Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVLI 169
           L  + ++   +S +    +V  EL  + SY LI          AA K   L+     V+ 
Sbjct: 122 LFTAAMLSLVLSDNILQLFVSWELVGLCSYLLIGFWFEKPSAAAAAKKAFLTTRIGDVMF 181

Query: 170 LALGMIYFQTGYLNV---------------------ELAS-EVGLRDDTPLRLAAISLIL 207
           L  G+I   +  L V                     ELA+ ++ +       L  I+L+ 
Sbjct: 182 LT-GIIVLTSDLLKVSGGFQDGVYLLRFDEIFSYIPELAALQINILGFEISHLTIITLLF 240

Query: 208 ------KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGL-----ILLSNLGDLSF 256
                 K+G FPLHVWLPDA     T  + I +   V A +Y +     + ++    L  
Sbjct: 241 FGGAVGKSGQFPLHVWLPDAMEGPTTVSALIHAATMVTAGVYLVARTFPMFIAAPDSLMV 300

Query: 257 LKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG------ATLYSL 310
           +  F   +  F   M I+  + KR+LA+ T+SQ+GY++LGL  G   G      +  + +
Sbjct: 301 VAYFGGFTALFAGTMGIVMNDLKRVLAFSTISQLGYMMLGLGLGTAIGLEAVGISLFHLI 360

Query: 311 AHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILLIVSIA---ILSLAISGLGITIGGVA 367
            HA FK  LFL  G++I A   +D++ LG    ++ ++ A   I +LA++G GI    + 
Sbjct: 361 NHAFFKALLFLCAGSVIHAVGTQDMRELGGVGKVMPITAATMTIAALALAGFGIPGTSIG 420

Query: 368 KSYLATTEKAIIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGV-LTVLVGIE 426
            S   + +  I  A  FG   S    N+         P  FSIL +L   + +  L+ + 
Sbjct: 421 TSGFMSKDPIIEAAYLFGEHSS----NWI--------PYVFSILAALLTSIYIFRLIFMT 468

Query: 427 LGGK-LSKYD-------LLIPLAFLTFYALR-GYLTRRDYVIRLE 462
             GK  S Y        + IPL+ L  +AL  G LTR  ++  LE
Sbjct: 469 FTGKPRSNYHGHESPAIMTIPLSILAIFALAFGALTRTGFMEFLE 513


>gi|6137793 NADH dehydrogenase subunit 4 [Metridium senile]
           >gi|3914174|sp|O47497|NU4M_METSE NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 4 >gi|7432346|pir||T11894 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - sea
           anemone (Metridium senile) mitochondrion
           >gi|913913|gb|AAB32499.1| (S75445) NADH dehydrogenase
           complex subunit 4 [Metridium senile=sea anemones,
           Peptide, 491 aa] >gi|2920995|gb|AAC04640.1| (AF000023)
           NADH dehydrogenase subunit 4 [Metridium senile]
           Length = 491
           
 Score = 96.3 bits (236), Expect = 7e-19
 Identities = 91/379 (24%), Positives = 156/379 (41%), Gaps = 57/379 (15%)

Query: 36  PLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGAS 95
           PL   V  + L  + L  LL P+                + + W S  FL+ EFL+    
Sbjct: 81  PLFLAVDGISLFFLILTALLTPIC---------------ILISWNSIKFLLKEFLL---- 121

Query: 96  SLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQD 150
                           LL +   L+G F + D   FY+  E   +  + LI       + 
Sbjct: 122 ---------------CLLFLEVLLMGVFSALDLLLFYILFEGILIPMFLLIGVWGSREEK 166

Query: 151 REAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAA---ISLIL 207
             A++ +   +   S  ++L +  +Y   G  + +    + L   T   + A   +SL +
Sbjct: 167 VRASYYFFFYTFVGSVFMLLGIFQLYSSVGTTDYQALLNIELPISTQKWIFAGFFLSLAV 226

Query: 208 KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLS---NLGDLSFLKPF---- 260
           K    P H+WLP AH  A    S IL+GI +K   YG +  +         +  PF    
Sbjct: 227 KIPQVPFHIWLPQAHVEAPVSGSVILAGILLKLGGYGFLRFTWPILPAATEYFAPFVIML 286

Query: 261 AILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKG 317
           +++++ +G +    Q + KRL+AY +V+ MG + LGL T  + G   A    LAH +   
Sbjct: 287 SVIAIIYGSLTTCRQVDLKRLIAYSSVAHMGLVTLGLFTHTIEGLVAAVFMMLAHGLVSS 346

Query: 318 GLFLGVGAIIDARKRKDLKYLGSRNILLIVSIA---ILSLAISGLGITIGGVAK--SYLA 372
            LF+ V  + +    + +KY       + + ++   +L+L    + ++   VA+  S LA
Sbjct: 347 ALFIAVTYLYERHHTRLIKYYRGITFSMPIFVSVFLVLTLTNMAIPLSCNFVAEFFSLLA 406

Query: 373 TTEKAIIYAVSFGTAFSFS 391
             E  I+  V   T   +S
Sbjct: 407 AFEYNIVIGVLAATGMVWS 425


>gi|9695386 NADH dehydrogenase subunit 2 [Phytophthora infestans]
           >gi|6692639|gb|AAF24782.1|U17009_14 (U17009) NADH
           dehydrogenase subunit 2 [Phytophthora infestans]
           Length = 497
           
 Score = 96.3 bits (236), Expect = 7e-19
 Identities = 97/420 (23%), Positives = 187/420 (44%), Gaps = 42/420 (10%)

Query: 15  LLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLS-RGGVVGGYPREIGI 73
           L++ +FG F  +     +  +        +YLL + L + L   +    ++ G    + I
Sbjct: 25  LILLLFGVFYKKNQNMQKILIIKNITTIIIYLLLILLILTLNITNISNNILNGV---LII 81

Query: 74  EVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHS-GLIGAFISKDYFNFY 132
                ++    +++  + F     YL+++  N  E+++L+L+   GL+    +      Y
Sbjct: 82  NNFTQFIKVILILSTIICFLIQQKYLIQQKINAYEINILMLISLLGLMLLVSTNHLITLY 141

Query: 133 VFMELSAVSSYALIASQDR-----EAAFKYLLLSMTASYVLILALGMIYFQTGYLNVE-- 185
           + +EL ++S Y L ++Q +     EA  KY +L   AS  ++    +IY  TG LN    
Sbjct: 142 LAIELQSLSFYILTSTQKKSILSIEAGLKYFILGSIASGFILFGSSIIYAITGSLNFNNI 201

Query: 186 --LASEVGLRDDTPLRLAA--------ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSG 235
             + S +   ++  + ++         + ++ K G  P H WLPD +  A   +SS  + 
Sbjct: 202 FLILSNINFLENINILISLSYGLIFILVGILFKVGASPFHFWLPDVYEGAPNNISSFFA- 260

Query: 236 IAVKAPIYGLIL---------LSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHT 286
           I  K    G+++         +S   ++ F    + LSM  G + A+ Q   KRLLAY +
Sbjct: 261 IVPKIAFIGILIRLFFEIFFNISYFFEI-FFYIISFLSMLIGALSALQQKKIKRLLAYSS 319

Query: 287 VSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVGAI-IDARKRK---DLKYLG 339
           +S +G+IL+G ++    N+    LY L + +    L+    ++ I+ +  K   DL  + 
Sbjct: 320 ISHVGFILIGFTSNMLNNIPFILLYVLIYIITSINLWTSYLSLNINHKPIKYLTDLSNIH 379

Query: 340 SRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATTEKAIIYAVSFGTAFSFSKLNYYL 397
           + N L+ + I I   +++G+    G  +K ++  +  +      V FG   S     YYL
Sbjct: 380 TINKLIAIIIIINIFSLAGIPPLAGFFSKLFIFFSAIKNNYFSLVFFGILISVLSSFYYL 439


>pir||E81251 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain M Cj1567c
           [imported] - Campylobacter jejuni (strain NCTC 11168)
           >gi|6968984|emb|CAB73555.1| (AL139079) NADH
           dehydrogenase I chain M [Campylobacter jejuni]
           Length = 495
           
 Score = 96.3 bits (236), Expect = 7e-19
 Identities = 82/324 (25%), Positives = 150/324 (45%), Gaps = 38/324 (11%)

Query: 75  VGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVF 134
           VG+D ++   ++   L+   S L+L  ++     +S +  +   ++G F +KD   FYVF
Sbjct: 68  VGVDSIALVLILLSSLMIFLSFLFL--KLEQKALISCIFFLEFAIMGLFSAKDGLLFYVF 125

Query: 135 MELSAVSSYALIA--SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVEL------ 186
            E S +    ++    +D  A  K+ + +   S ++++AL  IY    YLN +L      
Sbjct: 126 WEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSILMLVAL--IY--QAYLNYQLLNIFTF 181

Query: 187 --------ASEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIA 237
                   AS V   +   L  A  I+  +KA +FPLH W P  ++N+   VS +L  + 
Sbjct: 182 DLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPLHTWAPKVYANSPILVSVML--VV 239

Query: 238 VKAPIYGLILL-------SNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQM 290
            K   +G +L        +++  +  +    I+S+ +  ++A    N K L+AY ++S +
Sbjct: 240 FKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVYNALIAYRAENIKELIAYSSISHL 299

Query: 291 GYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKY---LGSRNIL 344
           G ++LG+ + N   + GA  Y  AH +  G LFL V  +       D+ +   L  +  L
Sbjct: 300 GVMILGIFSLNALGISGAVFYMFAHGIVTGALFLMVELLYQRYHTYDISFYHSLAKKAPL 359

Query: 345 LIVSIAILSLAISGLGITIGGVAK 368
             +   ++ LA   L +T+  V +
Sbjct: 360 FSIFFMLILLASVSLPLTVSFVGE 383


>pir||F81220 NADH dehydrogenase I, N chain NMB0259 [imported] - Neisseria
           meningitidis (group B strain MD58)
           >gi|7225482|gb|AAF40713.1| (AE002382) NADH dehydrogenase
           I, N subunit [Neisseria meningitidis MC58]
           Length = 480
           
 Score = 96.3 bits (236), Expect = 7e-19
 Identities = 94/317 (29%), Positives = 152/317 (47%), Gaps = 31/317 (9%)

Query: 109 LSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQD-----REAAFKYLLLSMT 163
           LSL  L+  G+     +  +   Y+ +EL +++ YALIA +       EAA KY +L   
Sbjct: 111 LSLFALL--GMSVMVSAGHFLTAYIGLELLSLALYALIALRRDSGFAAEAALKYFVLGAL 168

Query: 164 ASYVLILALGMIYFQTGYLNVE--LASEVGLR-DDTPLRLAAISLIL----KAGIFPLHV 216
           AS +L+  + M+Y  TG L     LAS      ++  L+L  + +++    K G  P H+
Sbjct: 169 ASGLLLYGISMVYGATGSLEFAGVLASSFNEEANEWLLKLGLVFIVVAVAFKLGAVPFHM 228

Query: 217 WLPDAHSNAKTYVSSILSGIAVK--APIYGL-ILLSNLGDL--SFLKPFAIL---SMAFG 268
           W+PD +  A T V++++ G A K  A ++   IL++ LG +   +   FA+L   S+  G
Sbjct: 229 WVPDVYHGAPTSVTALV-GTAPKIAAVVFTFRILVTGLGTVHHDWSLMFALLAAASLLVG 287

Query: 269 VIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNV------YGATLYSLAHAMFKGGLFLG 322
            + AI+Q N KR+ AY TVS MG+ILL    G V      Y A  Y+L  A   G L + 
Sbjct: 288 NLAAIMQTNIKRMFAYSTVSHMGFILLAFMAGAVGFAAGLYYAITYALMAAAGFGVLMVL 347

Query: 323 VGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAK--SYLATTEKAIIY 380
                +     DL  L    + L   + ++  +++G+   +G  AK    +A  ++  ++
Sbjct: 348 SDGDNECENISDLAGLNQHRVWLAFLMLLVMFSMAGIPPLMGFYAKFGVIMALLKQGHVW 407

Query: 381 AVSFGTAFSFSKLNYYL 397
              F    S     YYL
Sbjct: 408 LSVFAVIMSLIGAFYYL 424


>gb|AAF78606.1|AF260826_5 (AF260826) NADH subunit 4 [Cochliomyia hominivorax]
           Length = 446
           
 Score = 96.3 bits (236), Expect = 7e-19
 Identities = 84/307 (27%), Positives = 141/307 (45%), Gaps = 20/307 (6%)

Query: 33  FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFL-----IA 87
           F  PL       +++  FL +L F      +   Y   I    G D +S   +     I 
Sbjct: 10  FLFPLCLMYNTYWMVQSFLFLLSFIFVLMNMYSNYFMSISYLFGCDMISYGLILLSLWII 69

Query: 88  EFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA 147
             ++  + S+Y      N   L+++LL+   L+  F S   F FY+F E S + +  LI 
Sbjct: 70  SLMLMASESVYKYNNYMNLFLLNIILLLIL-LVLTFSSMSLFMFYLFFESSLIPTLFLIL 128

Query: 148 S----QDREAAFKYLLL-SMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAA 202
                 +R  A  YLL  ++  S  +++ +  +Y  TG LN  L +      +       
Sbjct: 129 GWGYQPERLQAGVYLLFYTLLVSLPMLIGIFYLYKLTGTLNFYLLNNFMFNYELLYFSLV 188

Query: 203 ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILL---SNLGDLSFLKP 259
           ++ ++K  +F +H+WLP AH  A    S IL+GI +K   YGL+ +     L  L F   
Sbjct: 189 MAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVFPFLQLMGLKFNFI 248

Query: 260 FAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLST---GNVYGATLYSLAHA 313
           +  +S+  GV+++++   Q + K L+AY +V+ MG +L GL T     + G+    +AH 
Sbjct: 249 WVSISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLMTLTYMGICGSYTLMIAHG 308

Query: 314 MFKGGLF 320
           +   GLF
Sbjct: 309 LCSSGLF 315


>pir||T14239 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
           Synechocystis sp. (strain PCC 6803)
           >gi|537489|gb|AAA85105.1| (U14130) NADH dehydrogenase
           subunit 4 [Synechocystis sp.]
           Length = 515
           
 Score = 96.3 bits (236), Expect = 7e-19
 Identities = 102/352 (28%), Positives = 158/352 (43%), Gaps = 42/352 (11%)

Query: 74  EVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELS-------LLLLMHSGLIGAFISK 126
           + GL W  S   I+  LV  A  +  +     W+  S       L++L++S  I   +++
Sbjct: 74  QFGLSWSVSVDGISMPLVLLAGLVTTLSIFAAWQVTSKPRLFYFLMVLLYSAQIVLIVAQ 133

Query: 127 DYFNFYVFM-ELSAVSSYALIAS---QDRE-AAFKYLLLSMTASYVLILALGMIYFQTGY 181
           D       M EL  V  Y L+ S   Q R+ AA K+LL +  AS  +++A G+ ++  G 
Sbjct: 134 DRLLLLSIMWELELVPVYLLVVSWGGQKRQYAAMKFLLYTAAASVFILVAPGLSFY--GD 191

Query: 182 LNVELASEVGLRDDTPLRL--------AAISLILKAGIFPLHVWLPDAHSNAKTYVSSIL 233
           +     +E+GL+D  P+ L        A ++  +K   FP H WLPDAH  A   VS IL
Sbjct: 192 VTTFDIAELGLKD-YPIALELFLYTGLALVAFAVKISHFPFHTWLPDAHGEASAPVSMIL 250

Query: 234 SGIAVKAPIYGLILLSNLGDLS--------FLKPFAILSMAFGVIMAILQFNAKRLLAYH 285
           +G+ +K   YGLI L NLG L          L    ++++ +G   +  Q + KR LAY 
Sbjct: 251 AGVLLKMGGYGLIRL-NLGLLEDAHVYFAPILVILGVVNIIYGGFSSFAQAH-KRRLAYS 308

Query: 286 TVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFL-GVGAIIDARKRKDLKYLGSRNIL 344
           +VS MG++LL  S        L  L+H +    LF    G   D      L  +G+   +
Sbjct: 309 SVSHMGFVLLLFSITIGIMDHLQMLSHGLIARVLFFPWTGVTYDRTNTLSLAQMGNIGKV 368

Query: 345 LIVSIAIL------SLAISGLGITIGGVAKSYLATTEKAIIYAVSFGTAFSF 390
           +    A+       SLA+ G+   +  +A         + IY+  F T   F
Sbjct: 369 MPTVFALFPMGAMASLALPGMSGFVSELA--VFVGVSSSDIYSTPFKTVTVF 418


>gb|AAK40664.1| NADH dehydrogenase subunit N  (NuoN) [Sulfolobus solfataricus]
           Length = 483
           
 Score = 96.0 bits (235), Expect = 9e-19
 Identities = 95/385 (24%), Positives = 174/385 (44%), Gaps = 24/385 (6%)

Query: 7   VISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGV-VG 65
           ++ P IF L   I   F   G    RFRL +   + ++ LLGV L  L++  +   +   
Sbjct: 28  ILIPSIFILFSSISVLFIDNGLDENRFRLSV---ILSVVLLGVSLAFLIYSWTASVINYT 84

Query: 66  GYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFIS 125
            + + + I+V   + S T      L    S  +++   T    LSL+LL   GL     +
Sbjct: 85  LFSKSLLIDVPGYFFSITVFSIGILAILLSKDHIISWPTRSSMLSLMLLSLLGLFYMSFA 144

Query: 126 KDYFNFYVFMELSAVSSYALIASQDR----EAAFKYLLLSMTASYVLILALGMIYFQTGY 181
            +         +S+ +SYA+   +      +A  KYL++ + +S ++I+        TG 
Sbjct: 145 NNIIIVLTTWAISSAASYAIAMLRKDYKSVDAGIKYLIMGLLSSSIMIIGFASYLISTGS 204

Query: 182 LNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAK----TYVSSILSGIA 237
           L    +          +   +I+ + K G FP   WLPD +++A      ++SS+   I 
Sbjct: 205 LLFTTSVIYPNLFFFSISFISIAFLFKIGAFPFQAWLPDVYTDADRISVAFISSVGKLIG 264

Query: 238 VKAPIYGLILLS--NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILL 295
           +  P++ ++ LS  N+ +L      ++ SM  G I A  + +   +L++ +++QMGYIL+
Sbjct: 265 I-IPLFRVVYLSDPNMVELVIFIVISVASMLVGNITAFSRRDVAAILSFSSITQMGYILI 323

Query: 296 GLSTGN------VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKD---LKYLGSRNILLI 346
           G +         V G  + SLA+ + + GLF  V  +       D   L+ + S++  L 
Sbjct: 324 GFAMFTVSPAIAVVGILVQSLAYGIAQVGLFGIVSHVEKVSGTSDISGLRGISSQDKPLA 383

Query: 347 VSIAILSLAISGLGITIGGVAKSYL 371
            +I +L L++ G+    G   K +L
Sbjct: 384 FAIVVLILSLLGIPPIFGFWGKLFL 408


>gi|11467090 NADH dehydrogenase subunit 4 [Chlamydomonas reinhardtii]
           >gi|128744|sp|P20113|NU4M_CHLRE NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 4 >gi|487065|pir||S37612 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
           Chlamydomonas reinhardtii mitochondrion
           >gi|12512|emb|CAA47112.1| (X66484) NADH  dehydrogenase
           [Chlamydomonas reinhardtii] >gi|563693|gb|AAB93441.1|
           (U03843) NADH dehydrogenase subunit 4 [Chlamydomonas
           reinhardtii]
           Length = 443
           
 Score = 96.0 bits (235), Expect = 9e-19
 Identities = 74/284 (26%), Positives = 132/284 (46%), Gaps = 35/284 (12%)

Query: 76  GLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFM 135
           G+D V+ + ++   ++F    + L++ V  +    LL ++   ++ A    D   FY+  
Sbjct: 68  GIDGVALSLMLLTTVLFPICMM-LLRTVAGFMTFILLEVL---VLSALCVLDLLGFYILF 123

Query: 136 ELSAVSSYALIASQ---DREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGL 192
           E S +  + LI        EAA+K +L +M  S VL+  L MIY + G  NV L      
Sbjct: 124 EASLILLFLLIGRAPYGSLEAAYKIVLYTMAGSLVLLPTLFMIYSECGTTNV-LYMTCAY 182

Query: 193 RDDTPLRLAAISLI-LKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNL 251
              T L    ++++ +K  + P+H+WLP+AH  A T  S +L+G+ +K        L  +
Sbjct: 183 NHQTVLGWGLLAVLAVKIPLMPVHLWLPEAHVAAPTAGSVLLAGVLLK--------LGGI 234

Query: 252 GDLSFLKP---------------FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLG 296
           G L F+ P                 ++S  F  +  + Q + K+++AY +++ M  + L 
Sbjct: 235 GFLRFMLPVVPEFCVSVFPLVSTLCLVSFLFSTLSTLRQIDLKKIVAYSSIAHMSMVTLA 294

Query: 297 L---STGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKY 337
           +   S  + Y ++   +AH +    LFL VG + D    K + Y
Sbjct: 295 IFSQSEFSAYSSSFLMIAHGLISPALFLIVGILYDRAHTKFILY 338


>pir||T06260 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - wheat
           mitochondrion >gi|2326762|emb|CAA74779.1| (Y14435) NADH
           dehydrogenase subunit 2 [Triticum aestivum]
           Length = 488
           
 Score = 96.0 bits (235), Expect = 9e-19
 Identities = 83/299 (27%), Positives = 141/299 (46%), Gaps = 31/299 (10%)

Query: 101 KRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDR-----EAAF 155
           +R   ++ + L+LL    ++    + D    Y+ +EL ++  Y + AS+ +     EA  
Sbjct: 107 ERFDAFEFIVLILLSTCSMLLMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGL 166

Query: 156 KYLLLSMTASYVLILALGMIYFQTGYLNVELASEV-------GLRDD---TPLRLAAISL 205
           KYL+L   +S +L+    MIY  TG  + +  +++       G R       +   A+  
Sbjct: 167 KYLILGAFSSGILLFGCSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGF 226

Query: 206 ILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYG-----LILLSNLGDLSFLKPF 260
           + K    P H+W PD +  + T V++ LS IA K  I+       I+ S  G L  +  F
Sbjct: 227 LFKITAVPFHMWAPDIYEGSPTPVTAFLS-IAPKISIFANMLRVFIVASYGGTLQQIFFF 285

Query: 261 -AILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGL 319
            +I SM  G + A+ Q   KRLLAY ++  +GYI +G S G + G  + SL   +F   L
Sbjct: 286 CSIASMILGALAAMAQTKVKRLLAYSSIGHVGYICIGFSCGTIEG--IQSLLIGIFIYAL 343

Query: 320 F-LGVGAIIDARKRKDLKY------LGSRNILLIVSIAILSLAISGLGITIGGVAKSYL 371
             +   AI+ A ++  +KY      L   N +L ++ +I   + +G+    G  +K YL
Sbjct: 344 MTIDAFAIVLALRQTRVKYIADLGALAKTNPILAMTFSITMFSYAGIPPLAGFCSKFYL 402


>gi|11467867 subunit 4 of NADH-plastoquinoneoxidoreductase [Nephroselmis
           olivacea] >gi|5880796|gb|AAD54889.1|AF137379_112
           (AF137379) subunit 4 of NADH-plastoquinoneoxidoreductase
           [Nephroselmis olivacea]
           Length = 500
           
 Score = 96.0 bits (235), Expect = 9e-19
 Identities = 76/303 (25%), Positives = 141/303 (46%), Gaps = 35/303 (11%)

Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTAS- 165
           L+L M++G +G F+ +D   F++  EL  +  Y L++    +    AA K++L +   S 
Sbjct: 117 LMLAMYTGQLGVFVVQDLLLFFLMWELELIPVYLLVSCWGGKKRLYAATKFILYTALGSI 176

Query: 166 YVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAA-----ISLILKAGIFPLHVWLPD 220
           ++L+ AL M +     +  ++++        P+ +       I+  +K    P+H WLPD
Sbjct: 177 FILLGALTMPFMGIQGVTFDMSTLAYREYSLPVEILLYTGFLIAYGVKLPAIPVHTWLPD 236

Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL--------SFLKPFAILSMAFGVIMA 272
            H  A      +L+GI +K   Y LI + N+  L         +L    ++++ +  + +
Sbjct: 237 THGEAHYSTCMLLAGILLKMGGYALIRI-NMNMLPHAHALFSPWLIGVGVVNIIYAALTS 295

Query: 273 ILQFNAKRLLAYHTVSQMGYILLG---LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA 329
             Q N KR +AY +VS MG++L+G   LS   + GA L  ++H +    LF   G   D 
Sbjct: 296 FAQRNLKRKIAYSSVSHMGFVLIGIGSLSEAGLNGAMLQMISHGLIGASLFFLAGTTYDR 355

Query: 330 RKRKDLKYLGS------RNILLIVSIAILSLAISGLG-------ITIGGVAKSYLATTEK 376
            +   L+ +G       +   L  + ++ SLA+ G+        + +G V     + T +
Sbjct: 356 TRTLVLEEMGGLATFMPKTFALFTACSLASLALPGMSGFFAELLVFLGLVTSEAYSPTFR 415

Query: 377 AII 379
           AI+
Sbjct: 416 AIM 418


>gi|11466400 subunit 2 of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
           >gi|7259543|gb|AAF43844.1|AF166114_56 (AF166114) subunit
           2 of NADH-plastoquinoneoxidoreductase [Mesostigma
           viride]
           Length = 502
           
 Score = 96.0 bits (235), Expect = 9e-19
 Identities = 113/438 (25%), Positives = 190/438 (42%), Gaps = 60/438 (13%)

Query: 1   MNAVIMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSR 60
           ++AV+     +  SL I I     I+  F+ R    L Y    + +LG+ L ML      
Sbjct: 12  IDAVLPEAIIICSSLFILI-----IDLIFQRRANAVLPY----MAILGLILSMLSLLFQW 62

Query: 61  GGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELS------LLLL 114
            G      +E+   +G  + + +  IA  L+   SS+  V     + E S       L++
Sbjct: 63  NG------KEVTAFLG-SFQTDSLSIAFRLLIALSSMLCVLLSIEYLENSKKTLSEFLVI 115

Query: 115 MHSGLIGAFI---SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMTASY 166
             +  +GA +   S D    ++ +E   + SY L     +     EA+ KYLL+   +S 
Sbjct: 116 FLTATLGAMLLCGSNDILMIFLSLETLGLCSYILTGYMKKDIRSNEASIKYLLIGAASSS 175

Query: 167 VLILALGMIY-FQTGYLNV-ELASEV-------GLRDDTPLRLAAISLILKAGIFPLHVW 217
           +L+    ++Y    G++ + E+A+ +        L     L L  + +  K    P H W
Sbjct: 176 ILLYGFSLLYGLSHGHIEIHEIAANLIKDQNGNSLASLVALALIIVGISFKIAAAPFHQW 235

Query: 218 LPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAILSMAF 267
            PD +  A T V + LS   V +   GL+L + +  + F           +  AILSMA 
Sbjct: 236 APDVYEGAPTPVVAFLS---VSSKAAGLMLATRIMTILFPYIINEWHNIFQILAILSMAI 292

Query: 268 GVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGAT---LYSLAHAMFKGGLFLGV- 323
           G I+AI Q N KR+L Y +++Q G++L+GL  GN+ G +   +Y L +     G F  V 
Sbjct: 293 GNIIAISQTNIKRMLGYSSIAQAGFLLVGLLAGNINGYSSMLVYMLIYLFMNLGAFACVI 352

Query: 324 --GAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATTEKAII 379
                  + + +D   L  ++ +L + ++I  L++ G+    G   K YL  A  E    
Sbjct: 353 LFSLKTGSDQIRDYGGLYLKDPILALCLSICLLSLGGIPPFGGFFGKLYLFWAGWEAGSY 412

Query: 380 YAVSFGTAFSFSKLNYYL 397
             V  G   S   + YY+
Sbjct: 413 LLVFVGLLTSVISIFYYI 430


>gb|AAG19079.1| (AE005006) Vng0562c [Halobacterium sp. NRC-1]
           Length = 489
           
 Score = 96.0 bits (235), Expect = 9e-19
 Identities = 80/275 (29%), Positives = 128/275 (46%), Gaps = 36/275 (13%)

Query: 132 YVFMELSAVSSYALIASQDREAAF----KYLLLSMTASYVLILALGMIYFQTGYLNVELA 187
           Y+  EL  V++Y L+   + +AA     KYL  +      ++  + ++Y  TG       
Sbjct: 89  YLAYELLTVATYPLVVHDETDAARAAGRKYLAYTFGGGVAVLAGVVLVYHATGTTAFAPG 148

Query: 188 SEVGLRDDTP-LRLAAISLIL-----KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAP 241
              GL    P L  AA  L++     KA + PLH WLPDA   A T VS +L  +AV   
Sbjct: 149 GIGGLATADPTLARAAFGLLITGFGVKAALMPLHSWLPDAMV-APTPVSGLLHAVAVVKS 207

Query: 242 -----------IYGLILLSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQM 290
                      +YG+ L+++L     +   A +++    ++A+ Q N KR LA+ TVSQ+
Sbjct: 208 GVFGIARVLLDVYGIDLVAHLNVGMAVAVVAAITLIVASVIALRQDNLKRRLAFSTVSQL 267

Query: 291 GYILLGLSTG-----------NVYGATLYSLAHAMFKGGLFLGVGAI---IDARKRKDLK 336
            YI+LGL+ G            + G  L+  AHA  K  LF   GA+          D+ 
Sbjct: 268 SYIVLGLAVGAATPGADATKWALIGGLLHIPAHAFMKLTLFFCAGALHVETHTDDISDMA 327

Query: 337 YLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL 371
            +G R  L + + A+ +  ++G+ +  G V+K +L
Sbjct: 328 GIGKRMPLTMTAFAVAAAGMAGIPLVAGFVSKYFL 362


>pir||T13881 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - Chlorogonium
           elongatum mitochondrion >gi|3413803|emb|CAA73990.1|
           (Y13644) NADH dehydrogenase subunit 4 [Chlorogonium
           elongatum]
           Length = 460
           
 Score = 95.6 bits (234), Expect = 1e-18
 Identities = 72/280 (25%), Positives = 126/280 (44%), Gaps = 33/280 (11%)

Query: 109 LSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDR---EAAFKYLLLSMTAS 165
           ++  LL+   ++GA    D   FY+  E S +  + LIA       +AA+K +L +M  S
Sbjct: 101 IATFLLLEIVILGALTVLDLLGFYILFEASLILLFLLIARTPYGSIDAAYKIVLYTMAGS 160

Query: 166 YVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLIL---KAGIFPLHVWLPDAH 222
            VL+  + M+Y + G  N+ +  +  +  D    L    L +   K  + P+H+WLP+AH
Sbjct: 161 LVLLPIIFMLYAECGSTNLFVLLDANISPDRQTFLGWGMLAVFAVKIPLMPVHLWLPEAH 220

Query: 223 SNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKP---------------FAILSMAF 267
             A T  S +L+G+ +K        L  +G + ++ P                 + S  F
Sbjct: 221 VAAPTAGSVLLAGVLLK--------LGGIGFIRYMIPLTPSFTVWVFPLVACMCLCSFLF 272

Query: 268 GVIMAILQFNAKRLLAYHTVSQMGYILL---GLSTGNVYGATLYSLAHAMFKGGLFLGVG 324
             +  I Q + K+++AY +++ M  + L    +S  + Y +T   +AH +   GLFL VG
Sbjct: 273 STLSTIRQIDLKKIVAYSSIAHMALVTLTIFSMSEFSTYSSTFMMIAHGLVSPGLFLLVG 332

Query: 325 AIIDARKRKDLKYL-GSRNILLIVSIAILSLAISGLGITI 363
            + +    K L Y  G  + + I S     L  + L   +
Sbjct: 333 LLYERAHTKFLLYFSGLGSYMPIFSTLFFLLTCANLSFPL 372


>gi|11497581 NADH dehydrogenase ND4 subunit [Spinacia oleracea]
           >gi|7636162|emb|CAB88784.1| (AJ400848) NADH
           dehydrogenase ND4 subunit [Spinacia oleracea]
           Length = 460
           
 Score = 95.6 bits (234), Expect = 1e-18
 Identities = 94/323 (29%), Positives = 146/323 (45%), Gaps = 42/323 (13%)

Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLIL 170
           L+L M+S  IG F S+D   F++  EL  +  Y L++        K  L S T  ++L  
Sbjct: 77  LMLAMYSAQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGG----KKRLYSAT-KFILYT 131

Query: 171 ALGMIYFQTGYLNVEL--ASEVGLRDDT------PLRLAAISLI-------LKAGIFPLH 215
           A G I+   G L V L  ++E  L  +T      P+ L  I  I       +K  I PLH
Sbjct: 132 AGGSIFLLMGVLGVGLYGSNEPTLNLETLVNQSYPVALEIIFYIGFFIAFAVKLPIIPLH 191

Query: 216 VWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL----SFLKPFAILSMAFGVIM 271
            WLPD H  A      +L+GI +K   YGL+ + N+  L    S   P+ ++     +I 
Sbjct: 192 TWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRI-NMELLPHAHSIFSPWLMIIGTMQIIY 250

Query: 272 AIL----QFNAKRLLAYHTVSQMGYILLGLST---GNVYGATLYSLAHAMFKGGLFLGVG 324
           A      Q N K+ +AY +VS MG+I++G+S+     + GA L  ++H      LF   G
Sbjct: 251 AASTSPGQRNLKKRIAYSSVSHMGFIIIGISSITDTGLNGAILQIISHGFIGAALFFLAG 310

Query: 325 AIIDARKRKDLKYLGS------RNILLIVSIAILSLAISGLGITIGGVAKSY-LATTEKA 377
              D  +   L  +G       +   L  S ++ SLA+ G+   I  +   + L T++K 
Sbjct: 311 TSYDRIRLVYLDEMGGIAIPMPKIFTLFSSFSMASLALPGMSGFIAELIVFFGLITSQKY 370

Query: 378 II---YAVSFGTAFSFSKLNYYL 397
           ++     ++FG A        YL
Sbjct: 371 LLIPKLLITFGMAIGMILTPIYL 393


>pir||G82822 NADH-ubiquinone oxidoreductase, NQO13 subunit XF0317 [imported] -
           Xylella fastidiosa (strain 9a5c)
           >gi|9105140|gb|AAF83128.1|AE003884_13 (AE003884)
           NADH-ubiquinone oxidoreductase, NQO13 subunit [Xylella
           fastidiosa]
           Length = 501
           
 Score = 95.6 bits (234), Expect = 1e-18
 Identities = 93/369 (25%), Positives = 171/369 (46%), Gaps = 47/369 (12%)

Query: 71  IGIEVGLDWVSSTFLIAEFLVFGASSLYLV-------KRVTNWKELSLLLLMHSGLIGAF 123
           IG  +G+D ++   ++   LV   + L L+       +RV  +  ++  L++    IG F
Sbjct: 73  IGYNLGVDGIAVALVLLTTLV---TVLVLIGSWGAINQRVPQY--VAAFLILEGVTIGIF 127

Query: 124 ISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLLSMTASYVLILALGMIYFQT 179
            + D   FYVF E   +  + +I      +   AA K+ L +   S ++++ L  +Y + 
Sbjct: 128 AATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAIKFFLYTFLGSVLMLVGLIYLYLKG 187

Query: 180 GYLNVE--LASEVGLRDDTPLRLA-AISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGI 236
           G   +    A ++  ++ T L  A  I+  +K  +FP+H WLPDAH  A T  S IL+ I
Sbjct: 188 GSFQLADLYAMQLSAKEQTWLFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAAI 247

Query: 237 AVKAPIYGLIL--LSNLGDLS-----FLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQ 289
           A+K   YG +   L  + D S      +   +++++ +  ++A++Q + K+L+AY +++ 
Sbjct: 248 ALKIGGYGFLRFNLPIVPDASHEFAWVVIALSLIAVIYVGLVALVQEDMKKLIAYSSIAH 307

Query: 290 MGYILLGL--------STGN-------VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKD 334
           MG++ LG+          GN       + GA +  ++H    G +F  +G + D    + 
Sbjct: 308 MGFVTLGIFISFTLVRDFGNTDAARLGLQGAMVQMISHGFVSGAMFTCIGVLYDRMHTRC 367

Query: 335 L-KYLGSRNIL--LIVSIAILSLAISGLGITIGGVAK--SYLATTEKAIIYAVSFGTAFS 389
           +  Y G  N++           +A +GL  T G V +    LA+ +K  + A   G    
Sbjct: 368 IADYGGVVNVMPWFATFAMFFYMANAGLPGTSGFVGEFMVILASFQKHPLVAFGAGATLV 427

Query: 390 FSKLNYYLW 398
            +   Y LW
Sbjct: 428 ITAA-YTLW 435


>gi|5835927 NADH dehydrogenase subunit 4 [Anopheles quadrimaculatus A]
           >gi|464238|sp|P33511|NU4M_ANOQU NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 4 >gi|7522046|pir||T12006 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4
           [similarity] - Anopheles quadrimaculatus A mitochondrion
            (fragment) >gi|744737|prf||2015259J NADH
           dehydrogenase:SUBUNIT=4 [Anopheles quadrimaculatus]
           Length = 448
           
 Score = 95.2 bits (233), Expect = 1e-18
 Identities = 89/313 (28%), Positives = 151/313 (47%), Gaps = 23/313 (7%)

Query: 29  FRARFRLPLTYEVKALYLLG--VFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLI 86
           F   F  PL++   + +++   +FL   +F ++   +   Y   I    GLD +S   ++
Sbjct: 6   FMMLFMFPLSFLKNSYWMVQNLIFLLAFIFMINLSSM--NYFNYISYYFGLDMISYGLIL 63

Query: 87  AEFLVFGASSLYLVKRVT--NWKELSLLLLMHS--GLIGAFISKDYFNFYVFMELSAVSS 142
             F + G   +   K  T  N+K L + +++     L+  F S   F FY+F E S + +
Sbjct: 64  LSFWICGLMLMASEKVFTYNNYKNLFIFMILFLLFMLVLTFSSMSVFMFYLFFEASLIPT 123

Query: 143 YALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTP 197
             LI       +R  A  YLL  ++ AS  L++ +  I      L+  L       D   
Sbjct: 124 LFLILGWGYQPERLQAGVYLLFYTLLASLPLLIGIFYILNFMDTLSFTLLLNYMFTDMNL 183

Query: 198 LRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF 256
           L L+ I + ++K  +F +H+WLP AH  A    S IL+GI +K   YGL+ + +L  +S 
Sbjct: 184 LYLSLIFAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGILLKLGGYGLLRMFSLLQVSG 243

Query: 257 LKP---FAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYGAT---L 307
           +K    +  +S+  GV+++++   Q + K L+AY +V+ MG +L GL T   +G T    
Sbjct: 244 IKYNYWWISVSLIGGVLISLVCLRQTDLKALIAYSSVAHMGIVLSGLLTMTYWGLTGSYA 303

Query: 308 YSLAHAMFKGGLF 320
             +AH +   GLF
Sbjct: 304 LMIAHGLCSSGLF 316


>emb|CAA05498.1| (AJ002490) ndhB [Arabidopsis thaliana]
           Length = 512
           
 Score = 95.2 bits (233), Expect = 1e-18
 Identities = 82/324 (25%), Positives = 144/324 (44%), Gaps = 42/324 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L        +  EA  KYLL+   
Sbjct: 130 LLFILTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDIRSNEATMKYLLMGGA 189

Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
           +S +L+     +Y  +G            +N ++ +  G+     L    + +  K  + 
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSLA 247

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
           P H W PD +  + T V + LS   V + +      + + D+ F          L+  AI
Sbjct: 248 PSHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAI 304

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
           LSM FG ++AI Q + KR+LAY ++ Q+GY+++G+  G+  G     + + +F   + LG
Sbjct: 305 LSMIFGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLG 364

Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
             A I            +D   L +++  L +S+A+  L++ GL    G   K +L    
Sbjct: 365 TFACIILFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCG 424

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
            +  + + VS G   S   + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVLSIYYYL 448


>dbj|BAA35095.1| (AB015981) MnhA [Staphylococcus aureus]
           Length = 801
           
 Score = 95.2 bits (233), Expect = 1e-18
 Identities = 117/443 (26%), Positives = 208/443 (46%), Gaps = 71/443 (16%)

Query: 5   IMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKAL-YLLGVFLPMLLFPLSRGGV 63
           I VI P+IF+L+I I         +R   R+ L + V ++  ++ +++  L+     G  
Sbjct: 6   IAVILPLIFALIIPIL--------YRFFKRIHLGWFVLSVPIVIFIYMLTLIKTTMSGNT 57

Query: 64  VG---GYPREIGIEVGLDWVSSTFLIAEFLVFGASSL-------YLVKRVTNWKELSLLL 113
           V     +    G+   L ++    L+   L+ G  SL       YL K          LL
Sbjct: 58  VMKTLNWMPHFGMNFDL-YLDGLGLLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCYLL 116

Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS-QDREAAF----KYLLLSMTASY-- 166
           L    ++G  +S +    Y+F EL++ SS+ LI+  ++R+A+     K L++++      
Sbjct: 117 LFMGAMLGVVLSDNVIILYLFWELTSFSSFLLISFWRERQASIYGAQKSLIITVFGGLSL 176

Query: 167 ---VLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLIL-----KAGIFPLHVWL 218
              +++LA+    F   Y+ ++ ASE+    ++P  + A+ LI+     K+  FP ++WL
Sbjct: 177 LGGIILLAIPTQSFSIQYM-IQHASEI---QNSPFFIFAMILIMIGAFTKSAQFPFYIWL 232

Query: 219 PDAHSNAKTYVSSIL-SGIAVKAPIYGL-----ILLSNLGDLSFLKPFAILSMAFGVIMA 272
           PDA   A T VS+ L S   VKA +Y +     I  ++ G +  +    ++++ +  + A
Sbjct: 233 PDA-MEAPTPVSAYLHSATMVKAGLYLIARMTPIFAASQGWVWTVTLVGLITLFWASLNA 291

Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTG-----------NVYGATL-----YSLAHAMFK 316
             Q + K +LA+ TVSQ+G I+  L  G            +Y A       + + HA FK
Sbjct: 292 TKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFHLINHATFK 351

Query: 317 GGLFLGVGAIIDARKRKDLKYLGSRNILLIVSI---AILSLAISGLGITIGGVAK-SYLA 372
           G LF+  GA+  +   +D+K LG    ++ +S     I +L+++G+    G ++K S+L 
Sbjct: 352 GALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGFLSKESFLE 411

Query: 373 TTEKAIIYAVSFGTAFSFSKLNY 395
           TT     +  S    FS   L Y
Sbjct: 412 TT-----FTASQANLFSVDTLGY 429


>gi|7525078 NADH dehydrogenase ND2 [Arabidopsis thaliana]
           >gi|7525095|ref|NP_051119.1| NADH dehydrogenase ND2
           [Arabidopsis thaliana] >gi|5881739|dbj|BAA84430.1|
           (AP000423) NADH dehydrogenase ND2 [Arabidopsis thaliana]
           >gi|5881756|dbj|BAA84447.1| (AP000423) NADH
           dehydrogenase ND2 [Arabidopsis thaliana]
           Length = 389
           
 Score = 95.2 bits (233), Expect = 1e-18
 Identities = 82/324 (25%), Positives = 144/324 (44%), Gaps = 42/324 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L        +  EA  KYLL+   
Sbjct: 7   LLFILTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDIRSNEATMKYLLMGGA 66

Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
           +S +L+     +Y  +G            +N ++ +  G+     L    + +  K  + 
Sbjct: 67  SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSLA 124

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
           P H W PD +  + T V + LS   V + +      + + D+ F          L+  AI
Sbjct: 125 PSHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAI 181

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
           LSM FG ++AI Q + KR+LAY ++ Q+GY+++G+  G+  G     + + +F   + LG
Sbjct: 182 LSMIFGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLG 241

Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
             A I            +D   L +++  L +S+A+  L++ GL    G   K +L    
Sbjct: 242 TFACIILFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCG 301

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
            +  + + VS G   S   + YYL
Sbjct: 302 WQAGLYFLVSIGLLTSVLSIYYYL 325


>gb|AAA93548.2| (L04272) NADH dehydrogenase subunit 4 [Anopheles quadrimaculatus A]
           Length = 472
           
 Score = 95.2 bits (233), Expect = 1e-18
 Identities = 89/313 (28%), Positives = 151/313 (47%), Gaps = 23/313 (7%)

Query: 29  FRARFRLPLTYEVKALYLLG--VFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLI 86
           F   F  PL++   + +++   +FL   +F ++   +   Y   I    GLD +S   ++
Sbjct: 6   FMMLFMFPLSFLKNSYWMVQNLIFLLAFIFMINLSSM--NYFNYISYYFGLDMISYGLIL 63

Query: 87  AEFLVFGASSLYLVKRVT--NWKELSLLLLMHS--GLIGAFISKDYFNFYVFMELSAVSS 142
             F + G   +   K  T  N+K L + +++     L+  F S   F FY+F E S + +
Sbjct: 64  LSFWICGLMLMASEKVFTYNNYKNLFIFMILFLLFMLVLTFSSMSVFMFYLFFEASLIPT 123

Query: 143 YALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTP 197
             LI       +R  A  YLL  ++ AS  L++ +  I      L+  L       D   
Sbjct: 124 LFLILGWGYQPERLQAGVYLLFYTLLASLPLLIGIFYILNFMDTLSFTLLLNYMFTDMNL 183

Query: 198 LRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF 256
           L L+ I + ++K  +F +H+WLP AH  A    S IL+GI +K   YGL+ + +L  +S 
Sbjct: 184 LYLSLIFAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGILLKLGGYGLLRMFSLLQVSG 243

Query: 257 LKP---FAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYGAT---L 307
           +K    +  +S+  GV+++++   Q + K L+AY +V+ MG +L GL T   +G T    
Sbjct: 244 IKYNYWWISVSLIGGVLISLVCLRQTDLKALIAYSSVAHMGIVLSGLLTMTYWGLTGSYA 303

Query: 308 YSLAHAMFKGGLF 320
             +AH +   GLF
Sbjct: 304 LMIAHGLCSSGLF 316


>pir||S77331 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4.1a -
           Synechocystis sp. (strain PCC 6803)
           >gi|1652513|dbj|BAA17434.1| (D90906) NADH dehydrogenase
           subunit 4 [Synechocystis sp.]
           Length = 502
           
 Score = 94.8 bits (232), Expect = 2e-18
 Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 22/289 (7%)

Query: 71  IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKEL--SLLLLMHSGLIGAFISKDY 128
           +   + +D +S   +I   L+ G + +Y +    N   L   L+LL+++G+ GA ++++ 
Sbjct: 71  LNYSLAIDGLSLPLVILNNLLTGVA-IYSIGPNVNRSRLYYGLILLINAGISGALLAQNL 129

Query: 129 FNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILALGMIYFQTGYLNV 184
             F VF EL  +  Y +IA    E    A+ K+LL +  +  +++ A   +   +G  + 
Sbjct: 130 LLFIVFYELELIPFYLMIAIWGGEKRGYASMKFLLYTAFSGLLVLAAFLGMSLLSGSHSF 189

Query: 185 ELASEVGLRDDTPLRLAAISLIL-----KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVK 239
           +   E+        +   + LIL     K  + PLH WLPDA++ A    + +L GI  K
Sbjct: 190 DYNPEITQTFTESAQTILLILILLGFGIKIPLVPLHTWLPDAYTEASPATAILLGGILAK 249

Query: 240 APIYGLI----LLSNLGDLSFLKPFAIL---SMAFGVIMAILQFNAKRLLAYHTVSQMGY 292
              YG+I     L       F    AI+   ++ +G + AI Q + KR++AY ++  MGY
Sbjct: 250 LGTYGIIRFGLQLFPQTWAQFAPVLAIIGTVTVLYGALSAIAQKDIKRMVAYSSIGHMGY 309

Query: 293 ILLGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYL 338
           IL+  + G   +V GA    ++H +    LF  VG +      +DL  L
Sbjct: 310 ILVAAAAGTELSVLGAVAQMVSHGLILALLFHLVGIVERKAGTRDLDVL 358


>pir||F75464 probable NADH-ubiquinone/plastoquinone subunit - Deinococcus
           radiodurans (strain R1)
           >gi|6458595|gb|AAF10453.1|AE001941_6 (AE001941)
           NADH-ubiquinone/plastoquinone subunit, putative
           [Deinococcus radiodurans]
           Length = 814
           
 Score = 94.8 bits (232), Expect = 2e-18
 Identities = 88/279 (31%), Positives = 138/279 (48%), Gaps = 24/279 (8%)

Query: 112 LLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASY 166
           LL     ++G  +S +    + F E+++V+S+ LI      S  R+ A K  L+S     
Sbjct: 110 LLCFGGSMLGLVLSDNLVALFGFWEMTSVTSFLLIGLWHTRSAARDGAVKAFLISALGGL 169

Query: 167 VLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLIL-----KAGIFPLHVWLPDA 221
            L+ A  M+    G  N+    ++G    +PL + A+   L     K+   P H+WLP A
Sbjct: 170 GLLAAAAMLSIAGGSPNLSQL-DLGAVRASPLFVPALLCTLLAAFTKSAQLPFHIWLPTA 228

Query: 222 HSNAKTYVSSIL-SGIAVKAPI-----YGLILLSNLGDLSFLKPFAILSMAFGVIMAILQ 275
              A T +S+ L S   VKA +     +GLI  ++        P  +L+M +G  +A+ Q
Sbjct: 229 -MEAPTPISAFLHSATMVKAGVVLVAKFGLIFGTSALWSGITVPLGLLTMVWGSWLALRQ 287

Query: 276 FNAKRLLAYHTVSQMGYI--LLGLS-TGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKR 332
            + K LLAY TVSQ+G +  L GL+  G  + AT + L HA FK  LF  VG I      
Sbjct: 288 TDLKALLAYSTVSQLGLLMSLYGLADAGGRFAATAHLLNHAAFKAALFFVVGIIDHETGT 347

Query: 333 KDLKYLGS--RNILLIVSIAIL-SLAISGLGITIGGVAK 368
           + + YL +  R + +   IA+L +L+++GL    G V+K
Sbjct: 348 RQIPYLQNLRRQMPVTFVIALLAALSMAGLPPLGGFVSK 386


>pir||G75389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 [similarity] -
           Deinococcus radiodurans (strain R1)
           >gi|6459249|gb|AAF11055.1|AE001993_5 (AE001993) NADH
           dehydrogenase I, N subunit [Deinococcus radiodurans]
           Length = 492
           
 Score = 94.8 bits (232), Expect = 2e-18
 Identities = 98/361 (27%), Positives = 153/361 (42%), Gaps = 43/361 (11%)

Query: 54  LLFPLSRGGVV----GGYPREIGIEV-------GLDWVSSTFLIAEFLVFGASSLYLVKR 102
           +LF L+ G  +    GG P   G++V        L    +  L+   ++ GA    LV  
Sbjct: 43  ILFVLASGASLVWLWGGAPWAAGMDVPRSAFAGALRADPAALLLGGTVLLGALLTLLVSL 102

Query: 103 VTNWKEL-------SLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQD----R 151
            T ++         +LL+   +G +    S D     + +E+ +++SY L   QD    +
Sbjct: 103 DTAYRARVSFAEFDALLMYAVTGCLLIAFSGDLIVMLIGLEIMSLASYVLATLQDSRRSQ 162

Query: 152 EAAFKYLLLSMTASYVLILALGMIYFQTGYLNVE-LASEVGLRDDTPLRLAAISLIL--- 207
           EA  KY LL    S +LI  L  +Y  TG LN   +A +V   D   + +     +L   
Sbjct: 163 EAGLKYFLLGSVGSAILIYGLAFLYGATGTLNYAGIAQQVSALDPQNIGILVTGTLLVLS 222

Query: 208 ----KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI------LLSNLGDLSFL 257
               K  + P H W PD +S A T VS  LS +   A   G++      L +  G  S L
Sbjct: 223 GFGVKIALVPFHQWTPDVYSGAPTLVSLFLSTVVKVAAFAGMLRVFGGALAAGPGWHSVL 282

Query: 258 KPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGAT---LYSLAHAM 314
           +    L++  G   A+ Q N KRLLAY  V+  G++ + L      G      Y L + +
Sbjct: 283 QILVALTLVIGNAAALYQQNFKRLLAYSAVAHTGFLAMTLLGDTAQGGAALGYYLLVYTL 342

Query: 315 FKGGLFLGVGAIIDARKR---KDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL 371
              G    V A+    +     D++ L  R+    V++A    +++GL    G  AK YL
Sbjct: 343 MTVGALAVVAALQRTEEGLTINDMRGLYYRHPAYAVALAFCLASLAGLPPFAGFFAK-YL 401

Query: 372 A 372
           A
Sbjct: 402 A 402


>emb|CAB67220.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit 4 [Oenothera
           elata subsp. hookeri]
           Length = 500
           
 Score = 94.8 bits (232), Expect = 2e-18
 Identities = 88/287 (30%), Positives = 131/287 (44%), Gaps = 35/287 (12%)

Query: 111 LLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLIL 170
           L+L M+SG IG+F S+D   F++  E   +  Y L++        K  L S T  ++L  
Sbjct: 117 LMLAMYSGQIGSFSSRDLLLFFLMWEFELIPVYLLLSMWGG----KKRLYSAT-KFILYT 171

Query: 171 ALGMIYFQTGYLNVEL--ASEVGLRDDT------PLRLAAISLI-------LKAGIFPLH 215
           A G I+   G L + L  ++E  L  +T      P+ L  I  +       +K  I PLH
Sbjct: 172 AGGSIFLLIGVLGIGLYGSNEPTLNFETLANQSYPVALEVIFYVGFLIAFAVKLPIIPLH 231

Query: 216 VWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL----SFLKPFAILSMAFGVIM 271
            WLPD H  A      +L+GI +K   YGL+ + N+  L        P  I+  A  +I 
Sbjct: 232 TWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRI-NMELLPHAHCLFSPGLIIVGAIQIIY 290

Query: 272 AIL----QFNAKRLLAYHTVSQMGYILLG---LSTGNVYGATLYSLAHAMFKGGLFLGVG 324
           A      Q N K+ +AY ++S MG+I++G   LS   + GA L  ++H      LF   G
Sbjct: 291 AASTSPGQLNLKKRIAYSSISHMGFIIIGIGSLSDTGLNGAILQIISHGFIGAALFFLAG 350

Query: 325 AIIDARKRKDLKYLGSRNI---LLIVSIAILSLAISGLGITIGGVAK 368
              D  +   L  +G   I    L   ++ILS+A   L    G VA+
Sbjct: 351 TSYDRIRLLYLDEMGGMAIPLPKLFTMLSILSMASLALPGLSGFVAE 397


>pir||S37071 NADH dehydrogenase I chain nuoN - Escherichia coli
           >gi|416009|emb|CAA48373.1| (X68301) NADH dehydrogenase
           I, subunit nuoN [Escherichia coli]
           Length = 425
           
 Score = 94.4 bits (231), Expect = 3e-18
 Identities = 87/295 (29%), Positives = 141/295 (47%), Gaps = 33/295 (11%)

Query: 133 VFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLN-VELASEVG 191
           + + L  +  YA    +  EA+ KY +LS  AS  L+  + ++Y Q+G L+ V L   +G
Sbjct: 75  ISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQSGDLSFVALGKNLG 134

Query: 192 ---LRDDTPLR---LAAISLILKAGIFPLHVWLPDAHSNAKTYVSSIL---SGIAVKAPI 242
              L D   L    L  + L  K  + P H+W PD +  A   VS+ L   S IA+   +
Sbjct: 135 DGMLNDALLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVV 194

Query: 243 YGLILLSNLGDLSFLK----PFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYI---LL 295
             L L + +GD   ++     +   S+ FG +MA+ Q N KRLL Y ++S +GY+   L+
Sbjct: 195 MRLFLYAPVGDSEQVRRGAGDYRFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALI 254

Query: 296 GLSTGNV-YGATLYSLAHAMFKGGLFLGVGAII-------DARKRKDLKYLGSRNILLIV 347
            L TG +   A    LA  +F      GV +++       DA      + L     +L  
Sbjct: 255 ALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAA 314

Query: 348 SIAILSLAISGLGITIGGVAKSY-LATTEKA----IIYAVSFGTAFSFSKLNYYL 397
            + ++ L+++G+ +T+G + K Y LA   +A    ++ AV  G+A     L YYL
Sbjct: 315 VMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAIG---LYYYL 366


>gi|11467244 NADH dehydrogenase ND2 [Zea mays] >gi|11467270|ref|NP_043102.1|
           NADH dehydrogenase ND2 [Zea mays]
           >gi|1171805|sp|P46619|NU2C_MAIZE NADH-PLASTOQUINONE
           OXIDOREDUCTASE CHAIN 2, CHLOROPLAST
           >gi|902273|emb|CAA60338.1| (X86563) NADH dehydrogenase
           ND2 [Zea mays] >gi|902299|emb|CAA60363.1| (X86563) NADH
           dehydrogenase ND2 [Zea mays]
           Length = 510
           
 Score = 94.4 bits (231), Expect = 3e-18
 Identities = 84/324 (25%), Positives = 142/324 (42%), Gaps = 42/324 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L     R     EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGA 189

Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
           +S +L+     +Y  +G            +N ++ +  G+     L    + L  K    
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGLGFKLSPA 247

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
           P H W PD +  + T V + LS   V + +    L + + D+ F          L+  AI
Sbjct: 248 PFHQWTPDVYEGSPTPVVAFLS---VTSKVAASALATRILDIPFYFSSNEWHLLLEILAI 304

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
           LSM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+        + + +F   + LG
Sbjct: 305 LSMILGNLLAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364

Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
             A I            +D   L +++  L +S+A+  L++ GL    G   K YL    
Sbjct: 365 TFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCG 424

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
            +  + + VS G   S   + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVLSIYYYL 448


>pir||S51503 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - yeast
           (Yarrowia lipolytica) mitochondrion
           Length = 486
           
 Score = 94.4 bits (231), Expect = 3e-18
 Identities = 79/316 (25%), Positives = 152/316 (48%), Gaps = 23/316 (7%)

Query: 72  GIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGA--FISKDYF 129
           G+  G+D +S TF++   L+   + L     +     L   L++  GL+    F + DY 
Sbjct: 76  GLLFGIDGLSLTFMLLTVLLMPLTLLGNWYNINFNSNLYYTLVLAIGLVILLNFWALDYI 135

Query: 130 NFYVFMELSAVSSYALI---ASQDREAAFKYLLLSMTASYVL----ILALGMIYFQTGYL 182
           +FY+  E +    + L+    S D E A  Y+L+  T+  +     I+ + ++   T ++
Sbjct: 136 SFYMLFEATLPLLFILMHIYGSSDSERASFYVLMFTTSGSLFMTLSIVVISIVLNTTNFI 195

Query: 183 NVELASEVGLRDDTPLRLAA-ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAP 241
           N  L   + L   T + L   +++++K  +FP+HVWLP  HS +    S IL+G+ +K  
Sbjct: 196 NHNLFV-LSLDLQTIIWLGTFMAMMVKTPLFPIHVWLPVVHSESPLAGSMILAGLILKLA 254

Query: 242 IYGL--ILLSNLGDLSFLKP-----FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYIL 294
           +Y +  +LL  L +   L        ++L++    +  + Q + K ++AY ++S MG  +
Sbjct: 255 LYAMLRLLLPTLCEAQMLYTPMMYIISLLTIMLTSLATLRQIDTKVIIAYSSISHMGMAM 314

Query: 295 LGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDL--KYLGSRNILLIVSI 349
           LG+ +     +YG+ +  +AH      LFL VG ++  R    +   Y G    +  ++ 
Sbjct: 315 LGVCSNTSLGIYGSMVLGVAHGFVSPALFLIVGGMLYDRYHMRIVNYYKGLTTYMPQLAT 374

Query: 350 AILSLAISGLGITIGG 365
            I+ L+ + +G  + G
Sbjct: 375 YIIMLSFANIGTPLTG 390


>gi|11466553 NADH dehydrogenase, subunit 2 [Reclinomonas americana]
           >gi|7431986|pir||S78184 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 2 - Reclinomonas americana (ATCC
           50394) mitochondrion >gi|2258383|gb|AAD11917.1|
           (AF007261) NADH dehydrogenase, subunit 2 [Reclinomonas
           americana]
           Length = 498
           
 Score = 94.4 bits (231), Expect = 3e-18
 Identities = 88/361 (24%), Positives = 163/361 (44%), Gaps = 54/361 (14%)

Query: 85  LIAEFLVFGASSLYLV--------KRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFME 136
           LI + ++  +SS+ ++        +R+ +++ + L+LL   G++    S D  + Y+ +E
Sbjct: 86  LITKIVLLISSSIAIIISFDYIKKERINSFEYMVLVLLGTLGMLLIISSYDLMSMYLAIE 145

Query: 137 LSAVSSYALIASQDR-----EAAFKYLLLSMTASYVLILALGMIYFQTGYLNVE------ 185
             ++  Y L A +       EA  KY +L   +S +++  + ++Y  TG    E      
Sbjct: 146 FQSLCLYVLAAFKRNSLFSVEAGLKYFVLGAFSSGIMLFGISILYGFTGVTGFEDLGKLL 205

Query: 186 -LASEVGLRDDTPLRLA----AISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKA 240
             +S   L   + + L     ++ L+ K    P HVW+PD +  + T V++     A+  
Sbjct: 206 IFSSNESLLSSSGIILGIVFISVGLLFKIYAVPFHVWVPDVYQGSPTIVTAFF---AIVP 262

Query: 241 PIYGLILLSNLGD------LSFLKPF----AILSMAFGVIMAILQFNAKRLLAYHTVSQM 290
            I  L LL+ L        + + +P     +I SM  G + A+ Q   KRLLAY  +  +
Sbjct: 263 SISVLTLLTRLYSSVLHDLIQYWQPVFIFCSIASMLIGSLGALSQRRIKRLLAYSAIGHV 322

Query: 291 GYILLGLSTG---NVYGATLYSLAHAMFKGGLFLGVGAIIDARKRK---------DLKYL 338
           GY+L+ LSTG    + G  +Y + + +     F     ++  RKR+         +L+ L
Sbjct: 323 GYVLIALSTGTPEGIRGLLVYIVIYIIMSACFFT---ILLSLRKRENNTQIVMIDELRAL 379

Query: 339 GSRNILLIVSIAILSLAISGLGITIGGVAKSY--LATTEKAIIYAVSFGTAFSFSKLNYY 396
              N +L +++AI+  +++G+    G  +K Y  L    + +   V  G   S     YY
Sbjct: 380 YKSNPILSLTLAIVLFSMAGIPPLAGFFSKLYVFLPAIHEGLFLLVVVGIIASVISAVYY 439

Query: 397 L 397
           L
Sbjct: 440 L 440


>gi|11499413 F420H2:quinone oxidoreductase, 53.9 kDa subunit (nuoM)
           [Archaeoglobus fulgidus] >gi|7483297|pir||H69477
           coenzyme F420--quinone oxidoreductase (EC 1.6.5.-) 53.9K
           chain AF1825 [similarity] - Archaeoglobus fulgidus
           >gi|2648719|gb|AAB89424.1| (AE000976) F420H2:quinone
           oxidoreductase, 53.9 kDa subunit (nuoM) [Archaeoglobus
           fulgidus]
           Length = 487
           
 Score = 94.4 bits (231), Expect = 3e-18
 Identities = 79/284 (27%), Positives = 145/284 (50%), Gaps = 30/284 (10%)

Query: 105 NWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA----SQDREAAFKYLLL 160
           N   +++L L+++G        ++   Y+F+E+S ++S+ LI        +  A  Y + 
Sbjct: 126 NLYAVAMLWLVYAG--------NFILLYIFLEISLLASFLLIYMYGYGNRQWVAVLYFVW 177

Query: 161 SMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPD 220
           +  A  + +L + +I F+   +       VG    T   L  + +++K      H+WLP 
Sbjct: 178 THIAGVLALLGILIIGFENSTMAFNAVKAVGF---TAWLLIFLGMLVKLPGLGPHIWLPW 234

Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFGVIMAIL------ 274
           AH+ A T VS++LS + V    Y L+ +  + D SF+  +  + +A+ ++ +I       
Sbjct: 235 AHAEAPTPVSALLSPLTVGLAGYVLLRVYMI-DSSFIDQYRDIIIAYAIVSSIYAGFSVF 293

Query: 275 -QFNAKRLLAYHTVSQMGYILLGLSTGN--VYGATLYSLAHAMFKGGLFLGVGAIIDA-R 330
            Q + KRLLAY TVSQMGY+L+ L  G+  + G  +  ++HA  K  LF+  GAII +  
Sbjct: 294 KQKDYKRLLAYSTVSQMGYVLIALCLGSYGLLGVVIQYISHAFGKSILFMTAGAIIASFH 353

Query: 331 KRKDLKYLGSRN--ILLIVSIAILS-LAISGLGITIGGVAKSYL 371
             +D+  +   +  +  I + A+L  + +SG+ +TIG   + Y+
Sbjct: 354 GLRDINRMSGMHEYVPTIANAALLGFMTLSGI-LTIGMFGEFYI 396


>pir||D70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoN2 -
           Aquifex aeolicus >gi|2983796|gb|AAC07354.1| (AE000737)
           NADH dehydrogenase I chain N [Aquifex aeolicus]
           Length = 488
           
 Score = 94.4 bits (231), Expect = 3e-18
 Identities = 100/385 (25%), Positives = 177/385 (45%), Gaps = 35/385 (9%)

Query: 13  FSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGVV-GGYPRE- 70
           F LL+  F  F +E   + + R  +   V  +    V + +L+  + +G    G +  + 
Sbjct: 22  FILLLLAFILFTLELFIKGKERRLVLNVVSYVGYFSVLMSLLIPWMYKGDTFYGNFTNDP 81

Query: 71  IGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFN 130
           + + V +  V  T  I  F    ASS +  K+ + + E   +L     L+G F+    +N
Sbjct: 82  LAVTVKIFAVLITLAILPF----ASSYFSAKK-SFYGEFYYILAFT--LLGVFVLASTYN 134

Query: 131 F---YVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYL 182
               YV +EL +V  Y L A     ++ +E AFKYL+L   +  +       +Y  +G L
Sbjct: 135 LIILYVALELVSVGFYILTALLRGSTEAKEGAFKYLILGGLSIALASYGAAFMYIYSGSL 194

Query: 183 NVELASEVGLRDDTPLRLAA----ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAV 238
           ++        +D   L L      I L +K G  P H W+PDA+  A T V+++++ +  
Sbjct: 195 DLREILTYQGKDIHYLVLGLVFFLIGLAVKIGAVPFHYWVPDAYQGAPTPVTALMASVGK 254

Query: 239 KAPIYGLILLSNLGDLSF-------LKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMG 291
            A    L+ +  L    F       +   A L+M +G ++A++Q + KRLLAY +++  G
Sbjct: 255 LAFFIPLVRVMPLVQEKFSLVWTITVGVIAALTMLYGNLVALVQKDVKRLLAYSSIAHSG 314

Query: 292 YILLGLSTGNVYG--ATLYSL-AHAMFKGGLFLGVGAIIDARKRKDL--KYLGSRNILLI 346
           YI+ G +   V G  A +Y L A+A+   G FL +  +    + ++    + G R     
Sbjct: 315 YIMAGAAVAKVIGMKAVIYFLVAYAVMSAGAFLVLALMEKNPEWQNYMENFYGLRFNAPY 374

Query: 347 VSIAILSLAISGLGI--TIGGVAKS 369
           ++ A     ++ LG+  T+G V K+
Sbjct: 375 IAFAFFVYMVALLGVPPTVGFVGKA 399


>pir||C70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoM2 -
           Aquifex aeolicus >gi|2983795|gb|AAC07353.1| (AE000737)
           NADH dehydrogenase I chain M [Aquifex aeolicus]
           Length = 501
           
 Score = 94.0 bits (230), Expect = 3e-18
 Identities = 114/442 (25%), Positives = 189/442 (41%), Gaps = 76/442 (17%)

Query: 10  PVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYP- 68
           P +F++LI  F         + +F   +      L  L   + +  F  +R  V+  Y  
Sbjct: 18  PAVFAVLILFF---------KEKFAKYIALLGTGLTFLVSLIALFKFDFARDNVIQFYEE 68

Query: 69  ----REIGIEV--GLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLL-------LLM 115
               +E+G+++  G+D +S   L+  FL    S + ++  + + K    L       LL 
Sbjct: 69  YTILKELGVKLSLGMDGLS---LLMYFLTTLVSLIAVIWSIGDEKIKHRLKEYYIAFLLT 125

Query: 116 HSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVLILA 171
            S +IG F + +   FYVF EL+ +    +I     +    +A+K+ +    +S  L+L 
Sbjct: 126 ESFVIGVFTTFNLIVFYVFYELTLLPMLFVIGIWGYKLRLYSAYKFFVYIFISSLFLLLG 185

Query: 172 LGMI--------------YFQTGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVW 217
           +  I              Y +   LN+    E+ L       L  I+  +K  I P H W
Sbjct: 186 IASISTYHYKMNGSFTFEYLELLNLNIPNGFEIFL-----FLLFFIAFAVKTPIVPFHTW 240

Query: 218 LPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLG---DLSF-LKPFAILSMAFGVIMA- 272
           LPDAH  A T  S +L+ I +K   Y L+   N+G   D +  L P+ +    + +IMA 
Sbjct: 241 LPDAHGEAPTAGSVVLAAILLKMGTYALVRF-NIGLFPDAALELSPYLVALGIYSIIMAS 299

Query: 273 ---ILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLFLGVGAI 326
              I Q N KR +AY +VS MG+++      N+ G   + +   AH +   GLF+  G I
Sbjct: 300 WMTISQTNIKRFVAYSSVSHMGFVVTAAFLLNMEGLRASIIEMFAHGLTSAGLFMVAGYI 359

Query: 327 ID-------ARKRKDLKYLGSRNILLIVSIAILSLAISGL--GITIGGVAKSYLATTEKA 377
            +       A  R  +K++     L     A  + A  GL  G +  G   + LA  E +
Sbjct: 360 YNKLHTFNFASLRGAIKFMP----LFATITAATAFAAMGLPGGSSFWGKFLTILAAREYS 415

Query: 378 --IIYAVSFGTAFSFSKLNYYL 397
             + + V F   FS + + Y+L
Sbjct: 416 TPLAFLVVFAAFFSAAYVLYFL 437


>pir||T12170 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
           australis chloroplast (fragment)
           >gi|2444412|gb|AAB71600.1| (AF020482) NADH
           dehydrogenase-like protein [Gleditsia australis]
           Length = 699
           
 Score = 93.6 bits (229), Expect = 4e-18
 Identities = 79/288 (27%), Positives = 133/288 (45%), Gaps = 33/288 (11%)

Query: 70  EIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAF 123
           ++ +E G  +D ++S  LI       LV   S  Y+       +  + +   ++ ++G  
Sbjct: 68  DLSLEFGYLIDSLTSIMLILITTVGILVLIYSDNYMSHDEGYLRFFAYMSFFNTSMLGLV 127

Query: 124 ISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLILALGMIYFQ 178
            S +    Y+F EL  + SY LI           A  K  + +    + L+L +  +Y+ 
Sbjct: 128 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGILGLYWI 187

Query: 179 TGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVWLPDAHSNAKT 227
           TG L      E+   L  +  + L  ++L         + K+  FPLHVWLPDA     T
Sbjct: 188 TGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA-MEGPT 246

Query: 228 YVSSILSGIAVKAPIYGLILLSNLGDLSFLKP--------FAILSMAFGVIMAILQFNAK 279
            +S+++    + A   G+ L++ L  L  + P          I+++  G  +A+ Q + K
Sbjct: 247 PISALIHAATMVAA--GIFLVARLLPLFIVIPSIMNGIALIGIITVVLGATLALAQKDIK 304

Query: 280 RLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
           R LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G+II
Sbjct: 305 RSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSII 352


>pir||T12171 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
           australis chloroplast (fragment)
           >gi|2444414|gb|AAB71601.1| (AF020483) NADH
           dehydrogenase-like protein [Gleditsia australis]
           Length = 699
           
 Score = 93.6 bits (229), Expect = 4e-18
 Identities = 79/288 (27%), Positives = 133/288 (45%), Gaps = 33/288 (11%)

Query: 70  EIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAF 123
           ++ +E G  +D ++S  LI       LV   S  Y+       +  + +   ++ ++G  
Sbjct: 68  DLSLEFGYLIDSLTSIMLILITTVGILVLIYSDNYMSHDEGYLRFFAYMSFFNTSMLGLV 127

Query: 124 ISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLILALGMIYFQ 178
            S +    Y+F EL  + SY LI           A  K  + +    + L+L +  +Y+ 
Sbjct: 128 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGILGLYWI 187

Query: 179 TGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVWLPDAHSNAKT 227
           TG L      E+   L  +  + L  ++L         + K+  FPLHVWLPDA     T
Sbjct: 188 TGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA-MEGPT 246

Query: 228 YVSSILSGIAVKAPIYGLILLSNLGDLSFLKP--------FAILSMAFGVIMAILQFNAK 279
            +S+++    + A   G+ L++ L  L  + P          I+++  G  +A+ Q + K
Sbjct: 247 PISALIHAATMVAA--GIFLVARLLPLFIVIPSIMNGIALIGIITVVLGATLALAQKDIK 304

Query: 280 RLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
           R LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G+II
Sbjct: 305 RSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSII 352


>pir||T12172 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
           fera chloroplast (fragment) >gi|2444416|gb|AAB71602.1|
           (AF020484) NADH dehydrogenase-like protein [Gleditsia
           fera]
           Length = 699
           
 Score = 93.6 bits (229), Expect = 4e-18
 Identities = 79/288 (27%), Positives = 133/288 (45%), Gaps = 33/288 (11%)

Query: 70  EIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAF 123
           ++ +E G  +D ++S  LI       LV   S  Y+       +  + +   ++ ++G  
Sbjct: 68  DLSLEFGYLIDSLTSIMLILITTVGILVLIYSDNYMSHDEGYLRFFAYMSFFNTSMLGLV 127

Query: 124 ISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLILALGMIYFQ 178
            S +    Y+F EL  + SY LI           A  K  + +    + L+L +  +Y+ 
Sbjct: 128 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGILGLYWI 187

Query: 179 TGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVWLPDAHSNAKT 227
           TG L      E+   L  +  + L  ++L         + K+  FPLHVWLPDA     T
Sbjct: 188 TGSLEFRNLFEILNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA-MEGPT 246

Query: 228 YVSSILSGIAVKAPIYGLILLSNLGDLSFLKP--------FAILSMAFGVIMAILQFNAK 279
            +S+++    + A   G+ L++ L  L  + P          I+++  G  +A+ Q + K
Sbjct: 247 PISALIHAATMVAA--GIFLVARLLPLFIVIPSIMNGIALIGIITVVLGATLALAQKDIK 304

Query: 280 RLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
           R LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G+II
Sbjct: 305 RSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSII 352


>pir||T12173 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
           microphylla chloroplast (fragment)
           >gi|2444418|gb|AAB71603.1| (AF020485) NADH
           dehydrogenase-like protein [Gleditsia microphylla]
           Length = 699
           
 Score = 93.6 bits (229), Expect = 4e-18
 Identities = 79/288 (27%), Positives = 133/288 (45%), Gaps = 33/288 (11%)

Query: 70  EIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAF 123
           ++ +E G  +D ++S  LI       LV   S  Y+       +  + +   ++ ++G  
Sbjct: 68  DLSLEFGYLIDSLTSIMLILITTVGILVLIYSDNYMSHDEGYLRFFAYMSFFNTSMLGLV 127

Query: 124 ISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLILALGMIYFQ 178
            S +    Y+F EL  + SY LI           A  K  + +    + L+L +  +Y+ 
Sbjct: 128 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGILGLYWI 187

Query: 179 TGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVWLPDAHSNAKT 227
           TG L      E+   L  +  + L  ++L         + K+  FPLHVWLPDA     T
Sbjct: 188 TGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA-MEGPT 246

Query: 228 YVSSILSGIAVKAPIYGLILLSNLGDLSFLKP--------FAILSMAFGVIMAILQFNAK 279
            +S+++    + A   G+ L++ L  L  + P          I+++  G  +A+ Q + K
Sbjct: 247 PISALIHAATMVAA--GIFLVARLLPLFIVIPSIMNGIALIGIITVVLGATLALAQKDIK 304

Query: 280 RLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
           R LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G+II
Sbjct: 305 RSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSII 352


>pir||H75389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 [similarity] -
           Deinococcus radiodurans (strain R1)
           >gi|6459250|gb|AAF11056.1|AE001993_6 (AE001993) NADH
           dehydrogenase I, M subunit [Deinococcus radiodurans]
           Length = 474
           
 Score = 93.2 bits (228), Expect = 6e-18
 Identities = 94/325 (28%), Positives = 151/325 (45%), Gaps = 31/325 (9%)

Query: 68  PREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTN-WKELSLLLLMHSGLIGAFISK 126
           P  +   V L+ V   F +    +   +  Y  +RV N    L+++L M +GL+G F ++
Sbjct: 58  PLGVTYAVELNGVGLAFALVTAFMTLMAVWYAARRVPNPGPMLAMVLAMETGLLGIFAAR 117

Query: 127 DYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYVLILALGMIYFQTGY----- 181
           D   FYVF E + + S  ++A        + L+    A+Y L+ +L M+    GY     
Sbjct: 118 DLILFYVFFEWALIPSLLMLAVYGGPHRMRALV--KFAAYTLLGSLFMLLSFIGYKWLGG 175

Query: 182 -----LNVELASEVGLRDDTPLRLAAI-SLILKAGIFPLHVWLPDAH-SNAKTYVSSILS 234
                L   LA  VG    T L L  + ++ +K  ++PLH WLPD H  N ++ +  ++ 
Sbjct: 176 SPTFALPDLLAHPVGGVAQTWLYLGFLAAMAVKLPLWPLHAWLPDFHEQNHESGIPDVM- 234

Query: 235 GIAVKAPIYGLIL--LSNLGDLSF-LKPFAILSMAFGVI----MAILQFNAKRLLAYHTV 287
           G   K   YG+ +  L+   D S  L+P  +   AF  +    +A  Q N KRLLAY  +
Sbjct: 235 GTLYKVGGYGIFVFGLTLFPDASLELRPVLMALAAFTALYAAWIAFGQTNWKRLLAYAGL 294

Query: 288 SQMGYILLGLSTGN---VYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNIL 344
           S MG++ LGL + N   V GA        ++ G LF+ VG + +     D +  G  N  
Sbjct: 295 SHMGFVALGLFSMNETAVIGAMYLLAFQNLYTGALFMAVGMLQERVGSLDTRVGGVMNQA 354

Query: 345 -----LIVSIAILSLAISGLGITIG 364
                L +++   S+A+ GL   +G
Sbjct: 355 GALGGLTLALWFASIAVPGLAGFVG 379


>gi|5834920 NADH dehydrogenase subunit 4 [Anopheles gambiae]
           >gi|464237|sp|P34852|NU4M_ANOGA NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 4 >gi|7432317|pir||T09809 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
           African malaria mosquito mitochondrion
           >gi|309065|gb|AAD12198.1| (L20934) NADH dehydrogenase
           subunit 4 [Anopheles gambiae]
           Length = 447
           
 Score = 92.8 bits (227), Expect = 8e-18
 Identities = 87/313 (27%), Positives = 149/313 (46%), Gaps = 23/313 (7%)

Query: 29  FRARFRLPLTYEVKALYLLG--VFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLI 86
           F   F  PL++     + +   +FL   +F ++   +   Y   I    GLD VS   ++
Sbjct: 6   FMLMFMFPLSFLKNFYWTVQNLIFLLTFMFMINLSSL--NYFNYISYYFGLDMVSYGLIL 63

Query: 87  AEFLVFGASSLYLVK--RVTNWKELS--LLLLMHSGLIGAFISKDYFNFYVFMELSAVSS 142
             F + G   +   K     N+++L   ++L +   L+  F S   F FY+F E S + +
Sbjct: 64  LSFWICGLMLMASEKVFSTNNYEKLFVFMILFLLFMLVLTFSSMSVFMFYLFFEASLIPT 123

Query: 143 YALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTP 197
             LI       +R  A  YLL  ++ AS  L++ +  I      L+  L       +   
Sbjct: 124 LFLILGWGYQPERLQAGVYLLFYTLLASLPLLIGIFYILNSKNTLSFTLLLNYSFSNFNL 183

Query: 198 LRLAAI-SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF 256
           L L+ + + ++K  +F +H+WLP AH  A    S IL+GI +K   YGL+ + +L  +S 
Sbjct: 184 LYLSLVFAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGILLKLGGYGLLRMFSLLQISG 243

Query: 257 LKP---FAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYGAT---L 307
           +K    +  +S+  GV+++++   Q + K L+AY +V+ MG +L GL T   +G T    
Sbjct: 244 VKYNYWWISISLVGGVLISLVCLRQTDLKALIAYSSVAHMGIVLSGLLTMTYWGLTGSYA 303

Query: 308 YSLAHAMFKGGLF 320
             +AH +   GLF
Sbjct: 304 LMIAHGLCSSGLF 316


>pir||T12401 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - Sarcophyton
           glaucum mitochondrion >gi|4091917|gb|AAC99651.1|
           (AF064823) NADH dehydrogenase subunit 4 [Sarcophyton
           glaucum]
           Length = 495
           
 Score = 92.8 bits (227), Expect = 8e-18
 Identities = 85/387 (21%), Positives = 167/387 (42%), Gaps = 61/387 (15%)

Query: 36  PLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGAS 95
           P+ + +  + +  V L  LL P+                + + W S  FL+ +F++    
Sbjct: 88  PILFAIDGISIFFVILSTLLTPIC---------------ILVSWNSIRFLLKDFIM---- 128

Query: 96  SLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQD 150
                           LL M   LIG F + D   FYV  E   +  + +I      ++ 
Sbjct: 129 ---------------CLLGMELLLIGVFSTLDLLIFYVLFESILIPMFLIIGVWGARAEK 173

Query: 151 REAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAA---ISLIL 207
            +AA+ +   ++  S +++L++  IY  TG  +    + + +  +  + L     +SL +
Sbjct: 174 IKAAYYFFFYTLVGSVLMLLSIAAIYRITGTTDYLSLTHIQIDSNIQIWLFIGFFLSLAV 233

Query: 208 KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLS---NLGDLSFLKP----F 260
           K  + P H+WLP AH  A    S IL+GI +K   YG I  +         +L P     
Sbjct: 234 KIPMVPFHIWLPLAHVEAPLAGSVILAGILLKLGGYGFIRFAWPLFPEATHYLAPVILTL 293

Query: 261 AILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKG 317
           +++++ +G +    Q +AKRL+AY +V+ MG + +GL T  + G   +    +AH +   
Sbjct: 294 SLIAVLYGSLTTCRQVDAKRLIAYSSVAHMGIVTIGLFTHTMEGLIASIFLMIAHGVVSP 353

Query: 318 GLFLGVGAIIDARKRKDLKYL-GSRNILLIVSIAILSLAISGLGITIG--------GVAK 368
            LF+ V  + +    + ++Y  G+   + + SI  +   ++ + + +          +  
Sbjct: 354 ALFVAVNLLYERHHTRLIRYYKGAVVSMPLFSIIFMVFTLANIAVPLSCNFVGEFLSLVA 413

Query: 369 SYLATTEKAIIYAVSFGTAFSFSKLNY 395
           ++  +T   I+ + S   A ++S   Y
Sbjct: 414 AFSTSTSLGILTSTSMVIAAAYSLYLY 440


>gb|AAD28444.1|AF126026_1 (AF126026) NADH dehydrogenase subunit 2 [Brassica napus]
           Length = 510
           
 Score = 92.8 bits (227), Expect = 8e-18
 Identities = 82/324 (25%), Positives = 142/324 (43%), Gaps = 42/324 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L        +  EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGA 189

Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
           +S  L+     +Y  +G            +N ++ +  G+     L    + +  K  + 
Sbjct: 190 SSSTLVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSLA 247

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
           P H W PD +  + T V + LS   V + +    L + + D+ F          L+  AI
Sbjct: 248 PSHQWTPDVYQGSPTPVVAFLS---VTSKVAASALATRIFDIPFYFSSNEWHLLLEILAI 304

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
           LSM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+  G     + + +F   + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYISMNLG 364

Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
             A I            +D   L +++  L +S+A+  L++ GL    G   K +L    
Sbjct: 365 TFACIILFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCG 424

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
               + + VS G   S   + YYL
Sbjct: 425 WRAGLYFLVSIGLLTSVLSIYYYL 448


>gb|AAG12229.1| (AF163463) NADH dehydrogenase subunit F [Schoenoxiphium burkei]
           Length = 593
           
 Score = 92.8 bits (227), Expect = 8e-18
 Identities = 82/325 (25%), Positives = 143/325 (43%), Gaps = 37/325 (11%)

Query: 112 LLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASY 166
           L L ++ ++G   S +    Y+F E+  + SY LI           A  K  L +    +
Sbjct: 19  LNLFNASMLGLVTSSNLIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFLTNRVGDF 78

Query: 167 VLILALGMIYFQTGYLNVELASEV-----------GLRDDTPLRLAAISLILKAGIFPLH 215
            L+L +   Y+  G        E+            L       L  +  I K+  FPLH
Sbjct: 79  GLLLGILGFYWIIGSFEFRDLFEITKNLIQKNGVNSLFTTLCTFLLFVGAIAKSAQFPLH 138

Query: 216 VWLPDAHSNAKTYVSSIL-------SGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFG 268
           +WLPDA     T +S+++       +G+ + A ++ L+L++    +  +    ++++  G
Sbjct: 139 IWLPDA-MEGPTPISALIHAATMVAAGVFLVARLFPLLLITP-NIMHIISSIGLITLFLG 196

Query: 269 VIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIID 328
             +A+ Q + KR LAY T+SQ+GYI+L L  G+   A  + + HA  K  LFLG G+II 
Sbjct: 197 ATLALAQIDIKRSLAYSTISQLGYIILALGIGSSRTALFHLITHAXSKALLFLGSGSIIH 256

Query: 329 AR---------KRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAI 378
           +          K +++ ++G     + I   A L   +S  GI       S       + 
Sbjct: 257 SMEPVVGYSPYKNQNMVFMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSKDEILSNSW 316

Query: 379 IYAVSFG--TAFSFSKLNYYLWKGY 401
           +Y+  FG  T F+     +Y+++ Y
Sbjct: 317 LYSPIFGIITYFTTGLTAFYMFRVY 341


>gi|11467594 NADH dehydrogenase, subunit 2 [Allomyces macrogynus]
           >gi|2147777|pir||S63658 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 2 - Allomyces macrogynus
           mitochondrion >gi|1236424|gb|AAC49241.1| (U41288) NADH
           dehydrogenase, subunit 2 [Allomyces macrogynus]
           Length = 474
           
 Score = 92.4 bits (226), Expect = 1e-17
 Identities = 78/291 (26%), Positives = 138/291 (46%), Gaps = 36/291 (12%)

Query: 118 GLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAA---FKYLLLSMTASYVLILALGM 174
           G+I    S D  + ++ +EL ++S Y +     +EA     KY LL   +S + +L L +
Sbjct: 99  GMITLIFSYDLISTFLAIELQSLSLYVIATMTRKEATAAGLKYFLLGSLSSAIFLLGLVL 158

Query: 175 IYFQTGY-----------LNVELASEVGLRDDTPLR-------LAAISLILKAGIFPLHV 216
           IY  TG            ++ + A  V L D    +       L A+ L++K G  P H 
Sbjct: 159 IYSLTGITQYDGYNILMSIDHDKAVSVFLGDSEYNKFILLGTVLIAVGLLVKVGAAPFHN 218

Query: 217 WLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF-LKPF------AILSMAFGV 269
           W PD + N  T ++S L+ +   + +  ++++ + GD+ + L+ F      AILS+  G 
Sbjct: 219 WAPDVYDNVPTLITSWLAIMGKLSILSFILIIKSTGDIGYQLESFTLLTLSAILSLFIGS 278

Query: 270 IMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFL-GVGAIID 328
           I+ + Q   KRLLAY ++S +G++L+G+S  +  G  + S    MF+  + L  + AI+ 
Sbjct: 279 ILGLTQHRIKRLLAYSSISHLGFLLIGMSIDS--GLAVSSFLFYMFQYWISLCCIFAILI 336

Query: 329 ARKRKDLKYLGS-----RNILLIVSIAILSLAISGLGITIGGVAKSYLATT 374
             ++ DL  + +      N  L     I   +++G+   IG   K  +  T
Sbjct: 337 YNQQSDLTSIAALTTIRSNPALAFVFIIHLFSLTGIPPLIGFFGKQMILYT 387


>gb|AAG19078.1| (AE005006) Vng0560c [Halobacterium sp. NRC-1]
           Length = 594
           
 Score = 92.4 bits (226), Expect = 1e-17
 Identities = 81/307 (26%), Positives = 136/307 (43%), Gaps = 31/307 (10%)

Query: 120 IGAFISKDYFNFYVFMELSAVSSYALI---ASQDREAAFKYLLLSMTASYVLILALGMIY 176
           +GA  + D+     F EL A +S  L+     +   A F+Y L       +L+ A+   +
Sbjct: 108 LGAVFAGDWLTLIFFWELMAATSTLLVWHYGGKAVRAGFRYALAHGIGGTLLLAAIIWQF 167

Query: 177 FQTG---YLNVELASEV-GLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSI 232
            +TG   + +V    E  GL       LAA+ + +  G   LH WLPD +       S  
Sbjct: 168 AETGTFLFGSVPGGPETAGLAGSIAPVLAALGIGVNVGFVGLHAWLPDTYPRPHIAASVF 227

Query: 233 LSGIAVKAPIYGLI-LLSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMG 291
           L     K  +YGL  +    G+++       +++ FG +MA+ Q + +RLL+YH  SQ+G
Sbjct: 228 LCVFTTKTGVYGLYRVFPEHGNMAVAYMGGAMAV-FGAMMALFQNDMRRLLSYHIQSQVG 286

Query: 292 YILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLG--SRNILLI 346
           Y++ G+  G+     GA  +   H ++KG LF+  G I+     + L  LG  +R + + 
Sbjct: 287 YMVAGVGIGSALAQAGAFAHVFNHILYKGLLFMTAGVIVYRTGEERLPKLGGLAREMPIT 346

Query: 347 V-SIAILSLAISGLGITIGGVAKSYLATTE----------------KAIIYAVSFGTAFS 389
             +  + +L+ISG     G V+K  + +                  + ++     GT  S
Sbjct: 347 AGAFTVAALSISGFPGFNGFVSKGIIISASHYMHAPLVTVGEFTGLQVLLLLGGVGTFMS 406

Query: 390 FSKLNYY 396
           F K  YY
Sbjct: 407 FIKFGYY 413


>gi|5834838 NADH dehydrogenase subunit 4 [Drosophila yakuba]
           >gi|128746|sp|P07707|NU4M_DROYA NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 4 >gi|85265|pir||I25797 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - fruit
           fly (Drosophila yakuba) mitochondrion
           >gi|12932|emb|CAA26993.1| (X03240) NADH dehydrogenase
           (ubiquinone) chain 4 [Drosophila yakuba]
           Length = 446
           
 Score = 92.1 bits (225), Expect = 1e-17
 Identities = 83/297 (27%), Positives = 139/297 (45%), Gaps = 26/297 (8%)

Query: 67  YPREIGIEVGLDWVSSTFLIAEFLVFGASSLYL--VKRVTNWKELSLL--LLMHSGLIGA 122
           Y  EI   +G D +S   ++    +     L    + +  N+K L LL  +++   L+  
Sbjct: 44  YWSEISYFLGCDMLSYGLVLLSLWICSLMLLASESINKYNNYKNLFLLNIVILLLLLVLT 103

Query: 123 FISKDYFNFYVFMELSAVSSYALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYF 177
           F S   F FY+F E S + +  LI       +R  A  YLL  ++  S  +++ +  +  
Sbjct: 104 FSSMSLFMFYLFFESSLIPTLFLILGWGYQPERLQAGVYLLFYTLLVSLPMLIGIFYVMN 163

Query: 178 QTGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIA 237
           +TG +N  L +      D        + ++K  +F +H+WLP AH  A    S IL+GI 
Sbjct: 164 KTGSMNFYLMNNFMFNYDLLYFCLLCAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIM 223

Query: 238 VKAPIYGLILLSNLGDLSFLK---PFAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMG 291
           +K   YGL+ + N   L  LK    +  +S+  GV+M+++   Q + K L+AY +V+ MG
Sbjct: 224 LKLGGYGLLRVINFLQLMNLKYSFVWISISLVGGVLMSLVCLRQTDLKALIAYSSVAHMG 283

Query: 292 YILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
            +L GL T   +   G+    +AH +   GLF               + LGSR++L+
Sbjct: 284 IVLAGLLTMTYWGLCGSYTLMIAHGLCSSGLF--------CLANVSYERLGSRSMLI 332


>sp|Q10880|Y051_MYCTU HYPOTHETICAL 65.6 KD PROTEIN RV0083 >gi|7446811|pir||D70850
           probable oxidoreductase subunit - Mycobacterium
           tuberculosis (strain H37RV) >gi|3261515|emb|CAA16264.1|
           (AL021428) hypothetical protein Rv0083 [Mycobacterium
           tuberculosis]
           Length = 640
           
 Score = 92.1 bits (225), Expect = 1e-17
 Identities = 97/369 (26%), Positives = 154/369 (41%), Gaps = 64/369 (17%)

Query: 46  LLGVFLPML------LFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYL 99
           LLG+F P+       L PLS            G+ + LD +   F+     V      YL
Sbjct: 24  LLGMFGPVRVVHVGWLLPLS------------GVHIELDRLGGFFMALTGAVAAPVGCYL 71

Query: 100 VKRVTNWK----ELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS-----QD 150
           +  V         ++++ L  + ++    +     F +  EL A++S  L+ S     Q 
Sbjct: 72  IGYVRREHLGRVPMAVVPLFVAAMLLVPAAGSVTTFLLAWELMAIASLILVLSEHARPQV 131

Query: 151 REAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLI---L 207
           R A   Y +  MT    + + +G++       +   A    + D     +  ++L+    
Sbjct: 132 RSAGLWYAV--MTQLGFIAILVGLVVLAAAGGSDRFAGLGAVCDGVRAAVFMLTLVGFGS 189

Query: 208 KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKP------FA 261
           KAG+ PLH WLP AH  A + VS+++S   V   IYG++      DL  L P       A
Sbjct: 190 KAGLVPLHAWLPRAHPEAPSPVSALMSAAMVNLGIYGIVRF----DLQLLGPGPRWWGLA 245

Query: 262 IL-----SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVY------------- 303
           +L     S  +GV+ A +  + KRLLAY T   MG I L L    ++             
Sbjct: 246 LLAVGGTSALYGVLQASVAADLKRLLAYSTTENMGLITLALGAATLFADTGAYGPASIAA 305

Query: 304 -GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGS---RNILLIVSIAILSLAISGL 359
             A L+ +AHA FK   F+  G+++ A   +DL  LG    R     V   + +L   GL
Sbjct: 306 AAAMLHMIAHAAFKSLAFMAAGSVLAATGLRDLDLLGGLARRMPATTVFFGVAALGACGL 365

Query: 360 GITIGGVAK 368
            +  G V++
Sbjct: 366 PLGAGFVSE 374


>gi|11466835 NADH dehydrogenase ND2 [Oryza sativa] >gi|11466862|ref|NP_039459.1|
           NADH dehydrogenase ND2 [Oryza sativa]
           >gi|128657|sp|P12125|NU2C_ORYSA NADH-PLASTOQUINONE
           OXIDOREDUCTASE CHAIN 2, CHLOROPLAST
           >gi|66149|pir||DERZN2 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 2 - rice chloroplast
           >gi|669085|emb|CAA33941.1| (X15901) NADH dehydrogenase
           ND2 [Oryza sativa] >gi|669089|emb|CAA33920.1| (X15901)
           NADH dehydrogenase ND2 [Oryza sativa]
           >gi|226656|prf||1603356CG NADH dehydrogenase ND2 [Oryza
           sativa]
           Length = 510
           
 Score = 91.7 bits (224), Expect = 2e-17
 Identities = 85/323 (26%), Positives = 144/323 (44%), Gaps = 40/323 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L     R     EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGA 189

Query: 164 ASYVLILALGMIYFQTGYLNVELASEVG------LRDDTPLRLAAISLILKAGI----FP 213
           +S +L+     +Y  +G   +EL   V       + +   + +A IS+ +  G      P
Sbjct: 190 SSSILVHGFSWLYGSSGG-EIELQEIVNGLINTQMYNSPGISIALISITVGLGFKLSPAP 248

Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAIL 263
            H W PD +  + T V + LS   V + +      + + D+ F          L+  AIL
Sbjct: 249 FHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRILDIPFYFSSNEWHLLLEILAIL 305

Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGV 323
           SM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+        + + +F   + LG 
Sbjct: 306 SMILGNLLAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGT 365

Query: 324 GAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATT 374
            A I            +D   L +++  L +S+A+  L++ GL    G   K YL     
Sbjct: 366 FACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCGW 425

Query: 375 EKAIIYAVSFGTAFSFSKLNYYL 397
           +  + + VS G   S   + YYL
Sbjct: 426 QAGLYFLVSIGLLTSVLSIYYYL 448


>emb|CAB59307.1| (AJ236287) NADH dehydrogenase subunit F [Carphalea glaucescens]
           Length = 733
           
 Score = 91.7 bits (224), Expect = 2e-17
 Identities = 93/334 (27%), Positives = 158/334 (46%), Gaps = 52/334 (15%)

Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVL 168
           L  + ++G   S +    Y+F EL  V SY LI           A  K  + +    + L
Sbjct: 130 LFSTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGL 189

Query: 169 ILALGMIYFQTG----------YLNVELASEVGLRDDTPLRLAAISL----ILKAGIFPL 214
           +L +   ++ TG          + N+ +A+EV     T   L A+ L    + K+  FPL
Sbjct: 190 LLGILGFFWITGSFEFRDLFEIFNNLIVANEVSFVFVT---LCAVLLFAGAVAKSAQFPL 246

Query: 215 HVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMA 266
           HVWLPDA     T +S+++   A      G+ L++ L  L  + P+         I+++ 
Sbjct: 247 HVWLPDA-MEGPTPISALIH--AATMVXXGIFLVARLLPLFIVIPYIMNSISLIGIVTLL 303

Query: 267 FGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAI 326
            G  +A+ Q + KR LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G+I
Sbjct: 304 LGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSI 363

Query: 327 IDA---------RKRKDLKYLG--SRNILLIVSIAIL-SLAISGLGITIGGVAK------ 368
           I +          K +++  +G  ++++ L  S  ++ +L+I G+       +K      
Sbjct: 364 IHSMETVVGYSPHKSQNMALMGGLTKHVPLTKSTFLVGTLSICGIPPLACFWSKDEILTD 423

Query: 369 SYLATTEKAIIYAVSFG-TAFSFSKLNYYLWKGY 401
           S+L +T  AII  V+ G TAF   ++    ++G+
Sbjct: 424 SWLYSTSFAIIAWVTAGLTAFYMFRIYLLTFEGH 457


>emb|CAC12089.1| (AL445066) NADH dehydrogenase, chain M related protein
           [Thermoplasma acidophilum]
           Length = 503
           
 Score = 91.3 bits (223), Expect = 2e-17
 Identities = 116/481 (24%), Positives = 203/481 (42%), Gaps = 68/481 (14%)

Query: 1   MNAVIMVISPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKA--LYLLGVFLPMLLFPL 58
           M A  ++I  +IF +  +  G +  E           T  V +  L +L     +L F  
Sbjct: 9   MFAFYILIISIIFGIAAFFTGRYAKE-----------TASVLSGILLILIAAFSILRFSS 57

Query: 59  SRGGVVGGYP----REIGI--EVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLL 112
             GG +  Y     R IG+   VG+  ++   LI   +V   S L +  R        L 
Sbjct: 58  YSGGFISQYSITISRSIGLYFSVGVSGLTDALLILTGIVMLVSIL-ITDRKYGSVFFGLE 116

Query: 113 LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDRE----AAFKYLLLSMTASYVL 168
           +L+  GLIG  IS+D+  FY+F EL  V  Y +I    R+     + K+ + +   S  +
Sbjct: 117 MLVEVGLIGLLISRDFLFFYIFWELVLVPVYFMIGRYGRDNKDSISLKFFVYTHIGSVFI 176

Query: 169 ILALGMIYFQT----GYLNVELASEVGLRDDTPLRLAAISL-------ILKAGIFPLHVW 217
           +L++  +Y  +    GY   E+   + +    P+      L       ++K   FP+H W
Sbjct: 177 LLSIFTLYSYSFSYLGYYTFEIGPLMSIVHSLPVFELGFVLFGFLFGFLVKMPSFPIHSW 236

Query: 218 LPDAHSNAKTYVSSILSGIAVKAPIYGL--ILLS-----NLGDLSFLKPFAILSMAFGVI 270
           LPD++ +A    + IL+G       YGL  IL+       L  L  L+   I+S+ +  +
Sbjct: 237 LPDSYYSAPYPATVILAGAISMMGGYGLFGILMEAYSAIPLWVLYILEALGIMSIIYFAL 296

Query: 271 MAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATL-YSLAHAMFKGGLF--LGVGAI- 326
            A+ Q N K+++A+ + S MG++ L  +   +  + + YS+ +    GG+F  +  G I 
Sbjct: 297 TAMFQRNIKKMMAFASASAMGFVTLSFAASIIESSGVDYSVKYIEAAGGMFQIVAHGLIM 356

Query: 327 ---------IDARKRKDLKY-LGS--RNILLIVSIAIL----SLAISGLGITIGGVAKSY 370
                    I+   + D  Y LG   R   ++ S +++    SL + G    IG    S 
Sbjct: 357 ALVFSALYYINRNTKTDSVYGLGGIYREAPMLASFSLIGFLASLGLPGFAGFIGEF--SI 414

Query: 371 LATTEKAIIYAVSFGTAFSFSKLNYYLWKG----YGNEPTNFSILPSLTLGVLTVLVGIE 426
           +    +AI + + F         +Y++W      YG    N   +  + +    +LV + 
Sbjct: 415 VVGVFQAISWYIFFVIFGMIITASYHIWTAQRSLYGPYNENLGFIRDVRVSEFLILVFLV 474

Query: 427 L 427
           L
Sbjct: 475 L 475


>sp|Q55429|NU5C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >gi|7432381|pir||S75795
           NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5.2 -
           Synechocystis sp. (strain PCC 6803)
           >gi|1001283|dbj|BAA10530.1| (D64003) NADH dehydrogenase
           subunit 5 [Synechocystis sp.]
           Length = 681
           
 Score = 90.9 bits (222), Expect = 3e-17
 Identities = 93/329 (28%), Positives = 153/329 (46%), Gaps = 45/329 (13%)

Query: 112 LLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS-QDREAAF----KYLLLSMTASY 166
           L L  S ++G  IS +    Y+F EL  + SY LI    DR+AA     K  + +    +
Sbjct: 128 LSLFASSMLGLVISPNLVQVYIFWELVGMCSYLLIGFWYDRKAAADACQKAFVTNRVGDF 187

Query: 167 VLILALGMIYFQTGYLNVELASE--VGLRDDTPLR--LAAISLIL-------KAGIFPLH 215
            L+L +  +Y+ TG  +     E   GL     L   +AAI  IL       K+  FPLH
Sbjct: 188 GLLLGILGLYWATGSFDFGTIGERLEGLVSSGVLSGAIAAILAILVFLGPVAKSAQFPLH 247

Query: 216 VWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAF-------- 267
           VWLPDA     T +S+++    + A   G+ L++ +  +    P  + ++AF        
Sbjct: 248 VWLPDA-MEGPTPISALIHAATMVAA--GVFLVARMYPVFEPIPVVMNTIAFTGCFTAFL 304

Query: 268 GVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
           G  +A+ Q + K+ LAY T+SQ+GY+++ +  G       + + HA FK  LFL  G++I
Sbjct: 305 GATIALTQNDIKKGLAYSTISQLGYMVMAMGIGAYSAGLFHLMTHAYFKAMLFLCSGSVI 364

Query: 328 ---------DARKRKDLKYLGS-RNILLIVSIAIL--SLAISGLGITIGGVAKSY---LA 372
                    D    +D++ +G  R  + I +   L  +LAI G+    G  +K     LA
Sbjct: 365 HGMEGVVGHDPILAQDMRIMGGLRKYMPITATCFLIGTLAICGIPPFAGFWSKDEILGLA 424

Query: 373 TTEKAIIYAVSFGTAFSFSKLNYYLWKGY 401
                +++ V + TA       +Y+++ Y
Sbjct: 425 FQANPLLWFVGWATA---GMTAFYMFRMY 450


>pir||S65075 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - barley
           chloroplast >gi|1223748|emb|CAA62222.1| (X90650) ndhB
           [Hordeum vulgare]
           Length = 510
           
 Score = 90.9 bits (222), Expect = 3e-17
 Identities = 85/323 (26%), Positives = 143/323 (43%), Gaps = 40/323 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L     R     EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGA 189

Query: 164 ASYVLILALGMIYFQTGYLNVELASEVG------LRDDTPLRLAAISLILKAGI----FP 213
           +S +L+     +Y  +G   +EL   V       + +   + +A IS+ +  G      P
Sbjct: 190 SSSILVHGFSWLYGSSGG-EIELQEIVNGLINTQMYNSPGISIALISITVGLGFKLSPAP 248

Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAIL 263
            H W PD +  + T V + LS   V + +      + + D+ F          L+  AIL
Sbjct: 249 FHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRILDIPFYFSSNEWHLLLEILAIL 305

Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGV 323
           SM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+        + + +F   + LG 
Sbjct: 306 SMILGNLLAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGT 365

Query: 324 GAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATT 374
            A I            +D   L  ++  L +S+A+  L++ GL    G   K YL     
Sbjct: 366 FACIVLFGLRTGTDNIRDYAGLYMKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCGW 425

Query: 375 EKAIIYAVSFGTAFSFSKLNYYL 397
           +  + + VS G   S   + YYL
Sbjct: 426 QAGLYFLVSIGLLTSVLSIYYYL 448


>gi|9653248 NADH dehydrogenase subunit 2 [Chondrus crispus]
           >gi|1352546|sp|P48903|NU2M_CHOCR NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 2 >gi|7432023|pir||S59103 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - red
           alga (Chondrus crispus) mitochondrion
           >gi|1334497|emb|CAA87619.1| (Z47547) NADH dehydrogenase
           (ubiquinone), subunit 2 [Chondrus crispus]
           Length = 497
           
 Score = 90.9 bits (222), Expect = 3e-17
 Identities = 81/345 (23%), Positives = 154/345 (44%), Gaps = 52/345 (15%)

Query: 77  LDWVSSTFLIAEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFME 136
           L W+  TF    +           +R+ +++   L+LL    ++    S D    Y+ +E
Sbjct: 94  LGWILITFSYINY-----------ERINSFEYWILILLAIVAILFIIQSYDLLTMYLSIE 142

Query: 137 LSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLILALGMIYFQTGYLN-------- 183
             ++  Y L + +       EA  KY +L   +S +L+    +IY  TG  N        
Sbjct: 143 FQSLIFYILASFKRTSEFSTEAGLKYFVLGAFSSGLLLFGSSLIYGLTGLTNFLDLAKFF 202

Query: 184 -----VELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVS---SILSG 235
                +EL+S +GL   T   L  +SL+ K    P H+W PD +  + T ++   SI+  
Sbjct: 203 TGMPMLELSSWIGLT--TGFTLILVSLLFKLSAAPFHMWAPDVYEGSPTSITLFFSIMPK 260

Query: 236 IAVKAPIYGLILLSNLGDLSFLKPFAILSMAF----GVIMAILQFNAKRLLAYHTVSQMG 291
           +A+ + +  L++LS    ++F +   ++ + F    G + A  Q   KR +AY ++S +G
Sbjct: 261 LAILSLLLKLLILSFHDFITFWRIIILICIIFSIMIGTLSAFSQIKWKRFIAYSSISHVG 320

Query: 292 YILLGLSTGNVYG---ATLYSLAHAMFKGGLFLGVGAI--------IDARKRKDLKYLGS 340
           + LL + +GN+ G   +  Y + + +   G+F  +  +           R  +DL  L  
Sbjct: 321 FFLLAILSGNLEGISSSIFYVIIYVITMLGIFSFILTLRFYNYSYHYQTRYLQDLISLSR 380

Query: 341 RNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYAVSFG 385
            N  L +S+ +   +++G+    G  AK ++     +++   SFG
Sbjct: 381 FNPALAISLTLFLFSMAGIPPLGGFFAKLFVLL---SVLQTKSFG 422


>sp|P72714|NU2C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 2 >gi|7431989|pir||S74569
           NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 -
           Synechocystis sp. (strain PCC 6803)
           >gi|1651794|dbj|BAA16721.1| (D90900) NADH dehydrogenase
           subunit 2 [Synechocystis sp.]
           Length = 521
           
 Score = 90.9 bits (222), Expect = 3e-17
 Identities = 94/378 (24%), Positives = 166/378 (43%), Gaps = 63/378 (16%)

Query: 111 LLLLMHSGLIGAFIS--KDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           + +L+ + L G F+S   +    ++ +E+ ++SSY +     R     EAA KYLL+  +
Sbjct: 114 IAILLTATLGGMFLSAANELVMVFISLEMLSISSYLMTGYMKRDPRSNEAALKYLLIGAS 173

Query: 164 ASYVLILALGMIY-FQTGYLNVELASEVGLRDDT---PLRLAAISLILKAGI------FP 213
           +S + +  L ++Y    G   + L +E  +  DT    L LA   + + AGI       P
Sbjct: 174 SSAIFLYGLSLLYGLSGGETQLVLIAEKLVNADTVGQSLGLAIALVFVIAGIAFKISAVP 233

Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGL---ILLSNLGDLS-----FLKPFAILSM 265
            H W PD +  + T V + LS +  KA  + +   +L++  G ++          A+LSM
Sbjct: 234 FHQWTPDVYEGSPTPVVAFLS-VGSKAAGFAVAIRLLVTAFGGITDEWHVIFTALAVLSM 292

Query: 266 AFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLFLG 322
             G ++A+ Q + KR+LAY ++ Q G++++GL  G+  G      Y L +      LF+ 
Sbjct: 293 VLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGSEDGYASMVFYMLIY------LFMN 346

Query: 323 VGAI---------IDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL-- 371
           +GA            + +  D   L  ++ LL + ++I  L++ G+    G   K Y+  
Sbjct: 347 LGAFSCIILFTLRTGSDQISDYAGLYHKDPLLTLGLSICLLSLGGIPPLAGFFGKIYIFW 406

Query: 372 ATTEKAIIYAVSFGTAFSFSKLNYYL-----------------WKGYGNEPTNFSILPSL 414
           A  +  +   V  G   S   + YY+                  K Y     N   +  L
Sbjct: 407 AGWQSGLYGLVLLGLVTSVVSIYYYIRVVKMMVVKEPQEMSEVIKNYPAIKWNLPGMRPL 466

Query: 415 TLGVLTVLVGIELGGKLS 432
            +G++  LV   L G L+
Sbjct: 467 QVGIVATLVATSLAGILA 484


>pir||A39366 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 -
           Synechocystis sp. (PCC 6803) >gi|217097|dbj|BAA14330.1|
           (D90288) ORF for 55kD protein [Synechocystis sp.]
           Length = 521
           
 Score = 90.5 bits (221), Expect = 4e-17
 Identities = 94/378 (24%), Positives = 166/378 (43%), Gaps = 63/378 (16%)

Query: 111 LLLLMHSGLIGAFIS--KDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           + +L+ + L G F+S   +    ++ +E+ ++SSY +     R     EAA KYLL+  +
Sbjct: 114 IAILLTATLGGMFLSAANELVMVFISLEMLSISSYLMTGYMKRDPRSNEAALKYLLIGAS 173

Query: 164 ASYVLILALGMIY-FQTGYLNVELASEVGLRDDT---PLRLAAISLILKAGI------FP 213
           +S + +  L ++Y    G   + L +E  +  DT    L LA   + + AGI       P
Sbjct: 174 SSAIFLYGLSLLYGLSGGETQLVLIAEKLVNADTVGQSLGLAIALVFVIAGIAFKISAVP 233

Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGL---ILLSNLGDLS-----FLKPFAILSM 265
            H W PD +  + T V + LS +  KA  + +   +L++  G ++          A+LSM
Sbjct: 234 FHQWTPDVYEGSPTPVVAFLS-VGSKAAGFAVAIRLLVTAFGGITDEWHVIFTALAVLSM 292

Query: 266 AFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLAHAMFKGGLFLG 322
             G ++A+ Q + KR+LAY ++ Q G++++GL  G+  G      Y L +      LF+ 
Sbjct: 293 VLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGSEDGYASMVFYMLIY------LFMN 346

Query: 323 VGAI---------IDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL-- 371
           +GA            + +  D   L  ++ LL + ++I  L++ G+    G   K Y+  
Sbjct: 347 LGAFSCIILFTLRTGSDQISDYAGLYHKDPLLTLGLSICLLSLGGIPPLAGFFGKIYIFW 406

Query: 372 ATTEKAIIYAVSFGTAFSFSKLNYYL-----------------WKGYGNEPTNFSILPSL 414
           A  +  +   V  G   S   + YY+                  K Y     N   +  L
Sbjct: 407 AGWQSRLYGLVLLGLVTSVVSIYYYIRVVKMMVVKEPQEMSEVIKNYPAIKWNLPGMRPL 466

Query: 415 TLGVLTVLVGIELGGKLS 432
            +G++  LV   L G L+
Sbjct: 467 QVGIVATLVATSLAGILA 484


>pir||T34612 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 [similarity] -
           Streptomyces coelicolor >gi|5042265|emb|CAB44519.1|
           (AL078618) nuoM, NADH dehydrogenase subunit
           [Streptomyces coelicolor]
           Length = 523
           
 Score = 90.5 bits (221), Expect = 4e-17
 Identities = 82/345 (23%), Positives = 157/345 (44%), Gaps = 54/345 (15%)

Query: 66  GYPREIGIE-VGLDWVSSTFLIAEFLVFGA--SSLYLVKRVTNWKE----LSLLLLMHSG 118
           G   E+G++ + +  ++ T L+  F++      +  L    + W+      +L+L + + 
Sbjct: 73  GVRYELGVDGIAVALIALTALLIPFIILAGWHDADPLETGSSRWRPTQGFFALILAVEAM 132

Query: 119 LIGAFISKDYFNFYVFMELSAVSSYALI---------------ASQDREAAFKYLLLSMT 163
           +I +F + D F FY+F E   +  Y LI               A+Q   AA K+LL ++ 
Sbjct: 133 VIISFEATDVFLFYIFFEAMLIPLYFLIGGFGDRAHEHGEKTAATQRSYAAVKFLLYNLA 192

Query: 164 ASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAA-----------ISLILKAGIF 212
              +++ A+  +Y   G  N  L      R +  L +A             +  +KA +F
Sbjct: 193 GGLIMLAAVIGLYVVAG--NFSLTEIAEARANGSLDMATSTERWLFLGFFFAFAVKAPLF 250

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILL-------SNLGDLSFLKPFAILSM 265
           PLH WLP+A   +   V+ +++ +  K   + ++         ++      +   A++S+
Sbjct: 251 PLHTWLPNAMGESTAPVAVLITAVVDKVGTFAMLRFCLQLFPEASKWATPVILVLAVISI 310

Query: 266 AFGVIMAILQFNAKRLLAYHTVSQMGYILLG---LSTGNVYGATLYSLAHAMFKGGLFLG 322
            +G ++A+ Q + KRL+AY ++S  G+I++G   +++    GATLY + H +    L L 
Sbjct: 311 IYGALLAVGQRDIKRLIAYASISHFGFIIMGIFAMTSQGQSGATLYMVNHGISTAVLMLI 370

Query: 323 VGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVA 367
            G +I  R        GSR I     +  ++  ++G    IGG+A
Sbjct: 371 AGFLISRR--------GSRLIADFGGVQKVAPILAGT-FLIGGLA 406


>emb|CAB89015.1| (AL353870) probable NADH dehydrogenase I complex, subunit.
           [Streptomyces coelicolor A3(2)]
           Length = 967
           
 Score = 90.5 bits (221), Expect = 4e-17
 Identities = 98/373 (26%), Positives = 170/373 (45%), Gaps = 50/373 (13%)

Query: 77  LDWVSSTFLIAEFLVF---GASSLYLVKRVTNWKELSL--------LLLMHSGLIGAFIS 125
           +DW      +AE +V    G  +L LV   + + + S         LL     ++G  ++
Sbjct: 66  VDWALRLDALAELMVLLAAGVGTLVLVYCASYFDDRSRQLGRFAGNLLAFTGAMLGLVLA 125

Query: 126 KDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMTASYVLILALGMIYFQTG 180
            D    Y+F EL+ V SY LI       ++R +A + L ++      +++   ++  + G
Sbjct: 126 DDLVLLYIFWELTTVFSYLLIGQTSDHKRNRRSALQALTVTALGGLTMLVGFLLLGHEAG 185

Query: 181 YLNVELASEVGLRDDTPLRLAAIS----LIL-----KAGIFPLHVWLPDAHSNAKTYVSS 231
              V       +  D P   AA+S    LIL     K+ I+P  +WLP+A + A T VS+
Sbjct: 186 TYRVS-----AILADPPAPSAALSTAVVLILVGALSKSAIWPFSLWLPNAMA-APTPVSA 239

Query: 232 ILSGIA-VKAPIYGLILLSN-LGDLSFLKPFAIL----SMAFGVIMAILQFNAKRLLAYH 285
            L   A VKA +Y +  L+    D++  +P  ++    +M  G   A+   + K +LAY 
Sbjct: 240 YLHAAAMVKAGVYLVARLAPAFADVTPWRPLLLVLGSVTMLLGGWRALRLHDLKLVLAYG 299

Query: 286 TVSQMGYILLGLSTGNV---YGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLG--S 340
           TVSQ+G + +    G       AT   L HA+FK  LFL  G +  A   +DL+ L    
Sbjct: 300 TVSQLGLLTVLTGAGRHDTGLAATAMILGHALFKAPLFLVTGIVDHATGTRDLRKLSGLG 359

Query: 341 RNILLIVSIAILS-LAISGLGITIGGVAKSYL-------ATTEKAIIYAVSFGTAFSFSK 392
           R +  + ++A+L+  +++ +   +G  AK          +T ++  + A   G+A + + 
Sbjct: 360 RRLPAVCAVAVLAGASMAAVPPLLGFSAKEAAFQALLDGSTGDRWALAAAVVGSALTTAY 419

Query: 393 LNYYLWKGYGNEP 405
              YLW  +  +P
Sbjct: 420 TLRYLWGAFARKP 432


>emb|CAC12090.1| (AL445066) NADH dehydrogenase, chain L related protein
           [Thermoplasma acidophilum]
           Length = 635
           
 Score = 90.5 bits (221), Expect = 4e-17
 Identities = 99/412 (24%), Positives = 177/412 (42%), Gaps = 63/412 (15%)

Query: 5   IMVISPVIFSLLIYIFGTF--RIEGTFRARFRLPLTYEVKALYLLGVFLPMLLFPLSRGG 62
           ++ ISP+I  LL  I G +  R  G   + F          ++L  +F  +  F + +  
Sbjct: 9   MIFISPLIGFLLTLIIGKYYRRWSGAIASFF----------IFLAFIFSVITYFTVIKHP 58

Query: 63  VVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVTNWKE-------LSLLLLM 115
           +   Y     I+ G+ ++ +  ++   +V   S +  +  +   K+        +   L 
Sbjct: 59  IYNSYTWFYNIDFGI-YIDNLAIVMAMMVSFVSLMIHLFAIYYMKDDPNKHVYFAETALF 117

Query: 116 HSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLIL 170
            +G++G  IS +    ++F EL  + SY LI           AA K  +++       I+
Sbjct: 118 TAGMLGLVISSNLVLLFLFWELVGLCSYLLIGFWFFKPNATAAAKKAFIVTRVGDLSFII 177

Query: 171 ALGMIYFQT----------GYLNVELASEVGLRDDTPLRLAAISLIL------KAGIFPL 214
            + ++Y+             YL +  AS + +     +RL  I++ +      K+  FPL
Sbjct: 178 GMSILYYSLINVTKDPLSIPYL-ISNASSIAVAIGK-VRLGIIAIFILGAAIGKSAQFPL 235

Query: 215 HVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMA-------- 266
           HVW+PDA     T  + I +   V A +Y +  L  +    +  PFA+ ++A        
Sbjct: 236 HVWIPDAMEGPTTVSALIHAATMVTAGVYLVARLFQV--FLYAAPFAMYAVAIVGSFTAL 293

Query: 267 FGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSL------AHAMFKGGLF 320
           +  I+ ++  + KR+LAY T+SQ+GY+L  +    + G    SL      +HA+FK  LF
Sbjct: 294 YAGIVGLVVNDVKRILAYSTISQLGYMLAAIGLAPIIGGVAVSLGMFHLISHAIFKALLF 353

Query: 321 LGVG----AIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAK 368
           +  G    A++D R  K +  L  R  +      I SLA+     T G  +K
Sbjct: 354 MSAGAFLVAMMDLRDAKQMGGLWKRMPVTTTLFFIGSLALVAFPGTSGYFSK 405


>gi|5835047 NADH dehydrogenase subunit 4 [Didelphis virginiana]
           >gi|730205|sp|P41308|NU4M_DIDMA NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 4 >gi|599731|emb|CAA82686.1|
           (Z29573) NADH dehydrogenase subunit 4 [Didelphis
           virginiana]
           Length = 474
           
 Score = 90.1 bits (220), Expect = 5e-17
 Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 35/297 (11%)

Query: 51  LPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEF----LVFGASSLYLVKRVTNW 106
           LPML  P+  G               LD +SS  L+       L+  AS  +L K     
Sbjct: 39  LPMLYHPMDLG-------YNFNNSFSLDSLSSPLLVLSCWLLPLMIMASQNHLNKESLMR 91

Query: 107 KEL--SLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLL 159
           K+L  ++++++ S LI AF S +   FY+  E + + +  +I      ++   A   +L 
Sbjct: 92  KKLYLTMMVILQSSLIIAFTSSELMMFYILFETTLIPTLIIITRWGNQNERLNAGIYFLF 151

Query: 160 LSMTASYVLILALGMIYFQTGYLNVELAS------EVGLRDDTPLRLAAISLILKAGIFP 213
            ++  S  L++AL  +    G L++ + S         L + T       + ++K  ++ 
Sbjct: 152 YTLVGSLPLLVALLTMNKNLGTLHILMNSILINQLNYTLSNSTLWYACMTAFMIKMPLYG 211

Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGD---LSFLKPFAILSMAFGVI 270
           LH+WLP AH  A    S +L+ I +K   YG++ +S   +   +  L PF ILSM +G+I
Sbjct: 212 LHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIMRISLFTEPMTMHLLYPFIILSM-WGMI 270

Query: 271 M----AILQFNAKRLLAYHTVSQMGYILLGL---STGNVYGATLYSLAHAMFKGGLF 320
           M     + Q + K L+AY +VS M  +++     ST +  GAT+  +AH +    LF
Sbjct: 271 MTSSICMRQTDLKSLIAYSSVSHMALVIIAALIQSTTSFMGATILMVAHGLTSSMLF 327


>emb|CAA63737.1| (X93358) phaD [Sinorhizobium meliloti]
           Length = 547
           
 Score = 90.1 bits (220), Expect = 5e-17
 Identities = 82/315 (26%), Positives = 144/315 (45%), Gaps = 41/315 (13%)

Query: 46  LLGVFLPMLLFPLSRGGV----------VGGYPREIGIEVGLDWVSSTFL-IAEFLVFGA 94
           L+   L M+L  L+  G           +G +P   GI + LD +S+  L +   L   A
Sbjct: 51  LVVFILSMILMRLAAAGTGSLPGSGVYQLGNWPAPFGIVLVLDRLSALMLCLTSGLALAA 110

Query: 95  SSLYLVKRVTNWKEL-SLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDR-- 151
            +  + +  T      SL  L+ +GL GAF++ D FN +VF E+   +SY L+       
Sbjct: 111 QAYSMARWHTAGHHFHSLFQLLVAGLNGAFLTGDLFNLFVFFEMMLAASYGLLLHGSGPL 170

Query: 152 --EAAFKYLLLSMTASYVLILALGMIYFQTGYLNV-ELASEVGLRDDTPLRLA------- 201
             +A   Y+ +++ AS + ++ + +IY   G LN+ +LA+++   +     L        
Sbjct: 171 RVKAGLHYIAVNLAASALFLIGVSLIYGAAGTLNMADLATKLAALEPRSRTLVEMGSAIL 230

Query: 202 AISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILL------------S 249
            ++ ++KAG++PL  WLP A++ A   V+ + + +  K  IY +I L            S
Sbjct: 231 GVAFLVKAGMWPLSFWLPTAYAAATPPVAGVFA-VLTKVGIYVIIRLHLLVFGTAAGASS 289

Query: 250 NLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGAT 306
             G   +L    +L++AFG I  +      RL  Y  +   G +L  +  G+   + GA 
Sbjct: 290 GFGQ-EWLVTGGMLTIAFGGIGVLASQAMGRLAGYSVLVSSGTLLAAVGLGHDGMLAGAL 348

Query: 307 LYSLAHAMFKGGLFL 321
            Y ++  +  G  FL
Sbjct: 349 FYLVSSTLTIGAFFL 363


>emb|CAB59310.1| (AJ236293) NADH dehydrogenase subunit F [Danais xanthorrhoea]
           Length = 671
           
 Score = 90.1 bits (220), Expect = 5e-17
 Identities = 88/328 (26%), Positives = 153/328 (45%), Gaps = 46/328 (14%)

Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILA 171
           + ++G   S +    Y+F EL  V SY LI           A  K  + +    + L+L 
Sbjct: 133 TSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLG 192

Query: 172 LGMIYFQTGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVWLPD 220
           +   ++ TG        E+   L  D  +    ++L         + K+  FPLHVWLPD
Sbjct: 193 ILGFFWITGSFEFRDLFEIFNNLIVDNEVNFVFVTLCAVLLFAGAVAKSAQFPLHVWLPD 252

Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGVIMA 272
           A     T +S+++    + A   G+ L++ L  L  + P+         I+++  G  +A
Sbjct: 253 A-MEGPTPISALIHAATMVAR--GIFLVARLLPLFIVIPYIMNFISLVGIITVFLGATLA 309

Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA--- 329
           + Q + KR LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G+II +   
Sbjct: 310 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSMET 369

Query: 330 ------RKRKDLKYLG--SRNILLIVSIAIL-SLAISGLGITIGGVAK------SYLATT 374
                  K +++  +G  ++++ +  S  +L +L+I G+       +K      S+L +T
Sbjct: 370 VVGYSPHKSQNMALMGGLTKHVPITKSTFLLGTLSICGIPPLACFWSKDEILTDSWLYST 429

Query: 375 EKAIIYAVSFG-TAFSFSKLNYYLWKGY 401
             AII  V+ G TAF   ++    ++G+
Sbjct: 430 SFAIIAWVTAGLTAFYMFRIYLLTFEGH 457


>gb|AAF27244.1|AF111766_1 (AF111766) NADH dehydrogenase [Sparrmannia africana]
           Length = 710
           
 Score = 90.1 bits (220), Expect = 5e-17
 Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 46/333 (13%)

Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVL 168
           L ++ ++G   S +    Y+F EL  + SY LI           A  K  + +    + L
Sbjct: 129 LFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRIGDFGL 188

Query: 169 ILALGMIYFQTGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVW 217
           +L +   Y+ TG    +   E+   L  +  +    ++L         + K+  FP HVW
Sbjct: 189 LLGIIGFYWITGSFEFQDLFEIFNNLIYNNEVNFLFVTLCASLLFAGAVAKSAQFPFHVW 248

Query: 218 LPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGV 269
           LPDA     T +S+++    + A   G+ L++ L  L  + P+         I+++  G 
Sbjct: 249 LPDA-MEGPTPISALIHAATMVAA--GIFLVARLLPLFIVIPYIMNVISLLGIITVLLGA 305

Query: 270 IMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA 329
            +A+ Q + K+ LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G+II +
Sbjct: 306 TLALAQKDIKKGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHS 365

Query: 330 R---------KRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGG--------VAKSYL 371
                     K +++ ++G  R  + I  IA L   +S  GI            ++ S+L
Sbjct: 366 MEAIVGYSPDKSQNMVFMGGLRKYVPITKIAFLVGTLSLCGIPPLACFWSKDEILSDSWL 425

Query: 372 ATTEKAIIYAVSFG-TAFSFSKLNYYLWKGYGN 403
            +   AII   + G TAF   ++    ++G+ N
Sbjct: 426 YSPSFAIIAWSTAGLTAFYMXRIYLLTFEGHLN 458


>gi|11466469 NADH dehydrogenase subunit 5 [Chrysodidymus synuroideus]
           >gi|7110466|gb|AAF36938.1|AF222718_12 (AF222718) NADH
           dehydrogenase subunit 5 [Chrysodidymus synuroideus]
           Length = 657
           
 Score = 90.1 bits (220), Expect = 5e-17
 Identities = 97/384 (25%), Positives = 169/384 (43%), Gaps = 52/384 (13%)

Query: 109 LSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALI-----ASQDREAAFKYLLLSMT 163
           +S L L    ++    S ++   +V  E   +SSY LI       Q  +++ K ++L+  
Sbjct: 113 MSYLSLFTFFMLVLVTSNNFLQLFVGWEGVGLSSYLLINFWFTRIQANKSSIKAMVLNRI 172

Query: 164 ASYVLILALGMIYFQTGYLNVELAS-----------EVGLRDDTPLRLAAISLIL----K 208
             +  ++A+  +Y  T  L+ ++             ++G+     L L  + L L    K
Sbjct: 173 GDFFFLIAIFSLYLITNSLDFDVIFSLVTLIKEYYIQIGIAKFCVLDLICLCLFLGATGK 232

Query: 209 AGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGD-----LSFLKPFAIL 263
           +    LH WLPDA        + I +   V A ++ +I  S L +     L+ +     +
Sbjct: 233 SAQLGLHSWLPDAMEGPTPVSALIHAATMVTAGVFLIIRCSFLFEYSPLILNLIIIIGSI 292

Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILL--GLSTGNVYGATLYSLAHAMFKGGLFL 321
           +  F     +LQ + KR++AY T SQ+GY+    GLS+ +V    LY+  HA FK  LFL
Sbjct: 293 TALFAATTGLLQNDIKRVIAYSTCSQLGYMFFACGLSSYDVGFFHLYN--HAFFKALLFL 350

Query: 322 GVGAIIDA-RKRKDLKYLGSRNILLIVSIAIL---SLAISGLGITIGGVAKSYLATTEKA 377
           G G++I A    +D++ +G   I+L  S +I+   SL++ G     G  +K         
Sbjct: 351 GAGSVIHALANEQDMRKMGGLRIILPFSYSIMLIGSLSLIGFPFLSGFYSKD-------- 402

Query: 378 IIYAVSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGVLTVLVGIE------LGGKL 431
           +I  +++    +F    YYL    G      +   S  + +L  L+         L    
Sbjct: 403 VILEIAYAKYNTFGHFAYYL----GVLAAFCTAFYSTRVLILVFLINTNGFRTNILNAHE 458

Query: 432 SKYDLLIPLAFLTFYA-LRGYLTR 454
             Y  ++PL FLT  + + GYL++
Sbjct: 459 GSYFFVLPLFFLTILSIISGYLSK 482


>gb|AAF82680.1| (AF188856) NADH dehydrogenase subunit B [Nymphaea odorata]
           Length = 486
           
 Score = 90.1 bits (220), Expect = 5e-17
 Identities = 84/323 (26%), Positives = 143/323 (44%), Gaps = 40/323 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L     R     EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDVRSNEATMKYLLMGGA 189

Query: 164 ASYVLILALGMIYFQTGYLNVELASEVG------LRDDTPLRLAAISLILKAGI----FP 213
           +S +L+     +Y  +G   +EL   V       + +   + +A IS+ +  G      P
Sbjct: 190 SSSILVYGFSWLYGSSGG-EIELQEIVNGLINTQMYNSPGISIALISITVGIGFKLSPAP 248

Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAIL 263
            H W PD +  + T V + LS   V + +      + + D+ F          L+  AIL
Sbjct: 249 FHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAIL 305

Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGV 323
           SM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+        + + +F   + LG 
Sbjct: 306 SMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGT 365

Query: 324 GAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATT 374
            A I            +D   L +++  L +S A+  L++ G+    G   K YL     
Sbjct: 366 FACIVLFGLRTGTDNIRDYAGLYTKDPFLALSSALCLLSLGGIPPLAGFFGKLYLFWCGW 425

Query: 375 EKAIIYAVSFGTAFSFSKLNYYL 397
           +  + + VS G   S   + YYL
Sbjct: 426 QAGLYFLVSIGLLTSVVSIYYYL 448


>pir||F83315 NADH dehydrogenase I chain N PA2649 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9948718|gb|AAG06037.1|AE004693_8 (AE004693) NADH
           dehydrogenase I chain N [Pseudomonas aeruginosa]
           Length = 486
           
 Score = 90.1 bits (220), Expect = 5e-17
 Identities = 97/395 (24%), Positives = 176/395 (44%), Gaps = 50/395 (12%)

Query: 44  LYLLGVFLPML-LFPLSRGGVVGGYPREIGIEVGLD----WVSSTFLIAEFLVFGASSLY 98
           L ++G+ L +L L P     V+G  P E+   V +D    +  +  L++       +  Y
Sbjct: 40  LSVIGLNLALLSLLP-----VLGVTPIEVTPLVLVDNYACFYMALVLVSALACVTLAHAY 94

Query: 99  LVKRVTNWKELSLLLLMHSGLIGAFISKDYF-NFYVFMELSAVSSYALIA-----SQDRE 152
           +     N +EL LLLL+ +      +S  +  + ++ +EL +V  Y ++A      +  E
Sbjct: 95  MESYPGNREELYLLLLLATAGGLVLVSAQHLASLFIGLELLSVPVYGMVAYAFFNKRSLE 154

Query: 153 AAFKYLLLSMTASYVLILALGMIYFQTGYLN-----VELASEV--GLRDDTPLRLAAISL 205
           A  KY +LS   S  L+  + ++Y ++G L       ++A  V  G      + +  + L
Sbjct: 155 AGIKYTVLSAAGSAFLLFGMALLYAESGTLGFAGLGAKVAEHVLSGPLVSVGVGMMLVGL 214

Query: 206 ILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF--------L 257
             K  + P H+W PD +  A   VS+ L+  +  A    L+ L  +   +         L
Sbjct: 215 GFKLSLVPFHLWTPDVYEGAPAPVSAFLATASKVAVFAVLLRLFQIAPAALDNQLLNISL 274

Query: 258 KPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGN---VYGATLYSLAHAM 314
              A+ S+ FG ++A+ Q N KRLL Y +++ +GY+L+ L       V    +Y   + +
Sbjct: 275 SVIAVASILFGNLLALTQSNIKRLLGYSSIAHLGYLLVALIASKGMAVEAVGVYLATYVL 334

Query: 315 FKGGLFLGVGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVA 367
              G F GV  ++       DA    + + L  R  +L   + ++ L+++G+ +T G + 
Sbjct: 335 TSLGAF-GVITLMSTPYSGRDADALFEYRGLFWRRPVLTAVMTVMMLSLAGIPLTAGFIG 393

Query: 368 KSYLATTEKA-----IIYAVSFGTAFSFSKLNYYL 397
           K Y+           +I A+  G+A     L YYL
Sbjct: 394 KFYVIAVGVESHLWWLIGALVLGSAIG---LYYYL 425


>gb|AAG12221.1| (AF163455) NADH dehydrogenase subunit F [Carex deweyana]
           Length = 671
           
 Score = 90.1 bits (220), Expect = 5e-17
 Identities = 89/347 (25%), Positives = 151/347 (42%), Gaps = 39/347 (11%)

Query: 91  VFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA--- 147
           VF  S  Y+       +  + L L ++ + G   S +    Y+F E+  + SY LI    
Sbjct: 96  VFIYSDNYMSHDQAYLRFFAYLNLFNASMFGLVTSSNLIQVYIFWEIVGICSYLLIGFWF 155

Query: 148 --SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEV--GLRDDTPLRLAAI 203
                  A  K  + +    + L+L +   Y+  G        E+   L     L    I
Sbjct: 156 TRPLAANACQKAFVTNRVGDFGLLLGILGFYWIIGSFEFRDLFEITNNLIQKNGLNSLLI 215

Query: 204 SL---------ILKAGIFPLHVWLPDAHSNAKTYVSSIL-------SGIAVKAPIYGLI- 246
           +L         I K+  FPLH+WLPDA     T VS+++       +G+ + A ++ L+ 
Sbjct: 216 TLCTFLLFVGAIAKSAQFPLHIWLPDA-MEGPTPVSALIHAATMVAAGVFLVARLFPLLS 274

Query: 247 LLSNLGDLSFLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGAT 306
           + SN+  +  +    ++++  G  +A+ Q + KR LAY T+SQ+GYI+L L  G+   A 
Sbjct: 275 ITSNI--MHIISSIGLITLFLGATLALAQIDIKRSLAYSTMSQLGYIILALGIGSSRTAL 332

Query: 307 LYSLAHAMFKGGLFLGVGAIIDAR---------KRKDLKYLGS-RNILLIVSIAILSLAI 356
            + + HA  K  LFLG G+II +          K +++  +G     + I   A L   +
Sbjct: 333 FHLITHAYSKALLFLGSGSIIHSMEPVVGYSPYKNQNMVLMGGLTKYIPITRTAFLLGTL 392

Query: 357 SGLGITIGGVAKSYLATTEKAIIYAVSFG--TAFSFSKLNYYLWKGY 401
           S  GI       S       + +Y+  FG  T F+     +Y+++ Y
Sbjct: 393 SLCGIPPLACFWSKDEILSNSWLYSPIFGIITYFTTGLTAFYMFRXY 439


>pir||S47879 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - North
           American opossum mitochondrion
           Length = 459
           
 Score = 90.1 bits (220), Expect = 5e-17
 Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 35/297 (11%)

Query: 51  LPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEF----LVFGASSLYLVKRVTNW 106
           LPML  P+  G               LD +SS  L+       L+  AS  +L K     
Sbjct: 39  LPMLYHPMDLG-------YNFNNSFSLDSLSSPLLVLSCWLLPLMIMASQNHLNKESLMR 91

Query: 107 KEL--SLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLL 159
           K+L  ++++++ S LI AF S +   FY+  E + + +  +I      ++   A   +L 
Sbjct: 92  KKLYLTMMVILQSSLIIAFTSSELMMFYILFETTLIPTLIIITRWGNQNERLNAGIYFLF 151

Query: 160 LSMTASYVLILALGMIYFQTGYLNVELAS------EVGLRDDTPLRLAAISLILKAGIFP 213
            ++  S  L++AL  +    G L++ + S         L + T       + ++K  ++ 
Sbjct: 152 YTLVGSLPLLVALLTMNKNLGTLHILMNSILINQLNYTLSNSTLWYACMTAFMIKMPLYG 211

Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGD---LSFLKPFAILSMAFGVI 270
           LH+WLP AH  A    S +L+ I +K   YG++ +S   +   +  L PF ILSM +G+I
Sbjct: 212 LHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIMRISLFTEPMTMHLLYPFIILSM-WGMI 270

Query: 271 M----AILQFNAKRLLAYHTVSQMGYILLGL---STGNVYGATLYSLAHAMFKGGLF 320
           M     + Q + K L+AY +VS M  +++     ST +  GAT+  +AH +    LF
Sbjct: 271 MTSSICMRQTDLKSLIAYSSVSHMALVIIAALIQSTTSFMGATILMVAHGLTSSMLF 327


>gb|AAG12227.1| (AF163461) NADH dehydrogenase subunit F [Kobresia uncinioides]
           Length = 626
           
 Score = 90.1 bits (220), Expect = 5e-17
 Identities = 81/325 (24%), Positives = 142/325 (42%), Gaps = 37/325 (11%)

Query: 112 LLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASY 166
           L L ++ ++G   S +    Y+F E+  + SY LI           A  K  + +    +
Sbjct: 52  LNLFNASMLGLVTSSNLIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGDF 111

Query: 167 VLILALGMIYFQTGYLNVELASEV-----------GLRDDTPLRLAAISLILKAGIFPLH 215
            L+L +   Y+  G        E+            L       L  +  I K+  FPLH
Sbjct: 112 GLLLGILGFYWIIGSFEFRDLFEITNNLIQKNGVNSLFTTLCTFLLFVGAIAKSAQFPLH 171

Query: 216 VWLPDAHSNAKTYVSSIL-------SGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFG 268
           +WLPDA     T +S+++       +G+ + A ++ L+L++    +  +    ++++  G
Sbjct: 172 IWLPDA-MEGPTPISALIHAATMVAAGVFLVARLFPLLLITP-NIMHIISSIGLITLFLG 229

Query: 269 VIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIID 328
             +A+ Q + KR LAY T+SQ+GYI+L L  G+   A  + + H   K  LFLG G+II 
Sbjct: 230 ATLALAQIDIKRSLAYSTMSQLGYIILALGIGSSRTALFHLITHGYSKALLFLGSGSIIH 289

Query: 329 AR---------KRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAI 378
           +          K +++  +G     + I   A L   +S  GI   G   S       + 
Sbjct: 290 SMEPVVGYSPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLGCFWSKDEILSNSW 349

Query: 379 IYAVSFG--TAFSFSKLNYYLWKGY 401
           +Y+  FG  T F+     +Y+++ Y
Sbjct: 350 LYSPIFGIITYFTTGLTAFYMFRVY 374


>gb|AAG26093.1| (AF123771) NADH dehydrogenase subunit B [Acorus calamus]
           Length = 486
           
 Score = 90.1 bits (220), Expect = 5e-17
 Identities = 81/324 (25%), Positives = 141/324 (43%), Gaps = 42/324 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L     R     EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGANDSITIFVAPECFSLCSYLLSGYTKRDVRSNEATMKYLLMGGA 189

Query: 164 ASYVLILALGMIY-----------FQTGYLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
           +S +L+     +Y              G +N ++ +  G+     L    + +  K  + 
Sbjct: 190 SSSILVHGFSWLYGLSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSLA 247

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
           P H W PD +  + T V + LS   V + +      + + D+ F          L+  AI
Sbjct: 248 PFHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAI 304

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
           LSM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+        + + +F   + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364

Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
             A I            +D   L +++  L +S+A+  L++ GL    G   K +L    
Sbjct: 365 TFARIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCG 424

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
            +  + + VS G   S   + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVVSIYYYL 448


>gb|AAG26132.1| (AF123784) NADH dehydrogenase subunit B [Trochodendron aralioides]
           Length = 486
           
 Score = 90.1 bits (220), Expect = 5e-17
 Identities = 82/324 (25%), Positives = 142/324 (43%), Gaps = 42/324 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L     R     EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDVRSNEATTKYLLMGGA 189

Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
           +S +L+     +Y  +G            +N ++ +  G+     L    + +  K    
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSPA 247

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
           P H W PD +  + T V + LS   V + +  L   + + D+ F          L+  AI
Sbjct: 248 PSHQWTPDVYEGSPTPVVAFLS---VTSKVAALASATRIFDIPFYFSSNEWHLLLEILAI 304

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
           LSM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+        + + +F   + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364

Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
             A I            +D   L +++  L +S+A+  L++ GL    G   K +L    
Sbjct: 365 TFACIVSFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCG 424

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
            +  + + VS G   S   + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVVSIYYYL 448


>emb|CAB65486.1| (AJ235842) NADH dehydrogenase, putative [Usteria guineensis]
           Length = 666
           
 Score = 89.7 bits (219), Expect = 7e-17
 Identities = 90/330 (27%), Positives = 148/330 (44%), Gaps = 46/330 (13%)

Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILA 171
           + ++G   S +    Y+F E   + SY LI           A  K  + +    + L+L 
Sbjct: 69  TSMLGLVTSSNLIQIYIFWEXVGMCSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLG 128

Query: 172 LGMIYFQTGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVWLPD 220
           +   Y+ TG        E+   L  +  + L  ++L         + K+  FPLHVWLPD
Sbjct: 129 ILGFYWITGSFEFRDLFEIFNNLIYNNEVNLFFVTLCGVLLFAGALAKSAQFPLHVWLPD 188

Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGVIMA 272
           A     T +S+++    + A   G+ L++ L  L  + PF        AI+++  G  +A
Sbjct: 189 A-MEGPTPISALIHAATMVAA--GIFLVARLLPLFMVIPFIMNFISLIAIITVLLGATLA 245

Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA--- 329
           + Q + KR LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G++I +   
Sbjct: 246 LAQKDIKRGLAYSTMSQLGYMMLALGIGSYRSALFHLITHAYSKALLFLGSGSLIHSMEN 305

Query: 330 ------RKRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGG--------VAKSYLATT 374
                  K +++  +G  R  L I   A L   +S  GI            +  S+L +T
Sbjct: 306 IVGYSPSKSQNMVLMGGLRKHLPITKNAFLLGILSLCGIPPLACFWSKDQILTDSWLYST 365

Query: 375 EKAIIYAVSFG-TAFSFSKLNYYLWKGYGN 403
             AII + + G TAF   +     ++G+ N
Sbjct: 366 IFAIIASTTAGLTAFXMFRXXLLTFEGHLN 395


>gb|AAF27247.1|AF111769_1 (AF111769) NADH dehydrogenase [Grewia biloba]
           Length = 711
           
 Score = 89.7 bits (219), Expect = 7e-17
 Identities = 87/333 (26%), Positives = 150/333 (44%), Gaps = 46/333 (13%)

Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVL 168
           L ++ ++G   S +    Y+F EL  + SY LI           A  K  + +    + L
Sbjct: 130 LFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRIGDFGL 189

Query: 169 ILALGMIYFQTGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVW 217
           +L +   Y+ TG    +   E+   L  +  +    ++L         + K+  FP HVW
Sbjct: 190 LLGILGFYWITGSFEFQDLFEIFNNLIYNNEVNSLFVTLCASLLFAGAVAKSAQFPFHVW 249

Query: 218 LPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGV 269
           LPDA     T +S+++    + A   G+ L++ L  L  + P+         I+++  G 
Sbjct: 250 LPDA-MEGPTPISALIHAATMVAA--GIFLVARLLPLFIVIPYIMNLISLLGIITVLLGA 306

Query: 270 IMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA 329
            +A+ Q + K  LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G+II +
Sbjct: 307 TLALAQKDIKXGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHS 366

Query: 330 R---------KRKDLKYLGS-RNILLIVSIAILSLAISGLGI--------TIGGVAKSYL 371
                     K +++ ++G  R  + I  IA L   +S  GI            ++ S+L
Sbjct: 367 MEAIVGYSPDKSQNMVFMGGLRKYVPITKIAFLVGTLSLCGIPPLACFWSKXEILSDSWL 426

Query: 372 ATTEKAIIYAVSFG-TAFSFSKLNYYLWKGYGN 403
            +   AII   + G TAF   ++    ++G+ N
Sbjct: 427 YSPIFAIIAWSTAGLTAFDMXRIXLXXFEGHXN 459


>gb|AAG26111.1| (AF123777) NADH dehydrogenase subunit B [Dioscorea bulbifera]
           Length = 480
           
 Score = 89.7 bits (219), Expect = 7e-17
 Identities = 84/323 (26%), Positives = 144/323 (44%), Gaps = 40/323 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L     R     EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGANDLITLFVAPECFSLCSYLLSGYTKRDVRSNEATMKYLLMGGA 189

Query: 164 ASYVLILALGMIYFQTGYLNVELASEVG------LRDDTPLRLAAISLILKAGI----FP 213
           +S +L+     +Y  +G   +EL   V       + +   + +A IS+ +  G      P
Sbjct: 190 SSSILVHGFSWLYGSSGG-EIELQEIVNGLINTQMYNSPGISIALISITVGIGFKLSPAP 248

Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAIL 263
            H W PD +  + T V + LS   V + +      + + D+ F          L+  AIL
Sbjct: 249 FHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAIL 305

Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGV 323
           SM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+        + + +F   + LG 
Sbjct: 306 SMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGT 365

Query: 324 GAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATT 374
            A I            +D   L +++  L +S+A+  L++ GL    G   K +L     
Sbjct: 366 FACIVSFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCGW 425

Query: 375 EKAIIYAVSFGTAFSFSKLNYYL 397
           +  + + VS G   S   + YYL
Sbjct: 426 QAGLYFLVSIGLLTSVVSIYYYL 448


>pir||C70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoN1 -
           Aquifex aeolicus >gi|2983744|gb|AAC07305.1| (AE000734)
           NADH dehydrogenase I chain N [Aquifex aeolicus]
           Length = 464
           
 Score = 89.3 bits (218), Expect = 9e-17
 Identities = 97/353 (27%), Positives = 159/353 (44%), Gaps = 42/353 (11%)

Query: 77  LDWVSSTFLIAEF-LVFGASSLYLVKRVTNWKELSLLLLMHS-GLIGAFISKDYFNFYVF 134
           L+ +   F++A    V  +S  Y  K+ + + EL  L L+ + GL+    S +    +  
Sbjct: 68  LNLIGKLFILAVTGFVLLSSYDYFSKKNSQYGELPYLYLIATLGLMVMISSDNLAIIFTG 127

Query: 135 MELSAVSSYALIASQDRE-----AAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASE 189
           +EL++++ Y L+    RE      AFKYL++  T + +  L   ++Y  +G + +    E
Sbjct: 128 LELASITMYILVGLFRREYLSKEGAFKYLVIGTTGTSMYALGSALVYASSGSMVLSPVKE 187

Query: 190 VGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI--- 246
                   + L   +L LK    P H W PDA+  A T  ++ LS +  K  +Y L    
Sbjct: 188 ENTLFALGVILIISALALKVSAVPFHFWTPDAYEGAPTPTTAYLSTVP-KIGMYFLFVKL 246

Query: 247 ---LLSNLGDLSFLKPF-AILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLST--G 300
              L S   D  ++    A+LSM +G I+A  Q + KRLLAY +++  GY L  L+    
Sbjct: 247 TMYLFSAFPDWKYVVMLLAVLSMFYGNIVAYAQKSVKRLLAYSSIAHAGYFLTALTAVDK 306

Query: 301 NVYGATL-YSLAHAMFKGGLFLGVGAIIDARKR-----KDLKYLGSRNILLIVSIAILSL 354
           +++ A L Y   +A+   G F  V AI++ ++       D K L   N +L   +A+   
Sbjct: 307 HLFSALLFYVFVYALATVGAFT-VLAILEKKEGWTHHFLDFKGLKEENPVLASMLALFLF 365

Query: 355 AISG----------LGITIGGVAKSYLATTEKAIIYAVSFGTAFSFSKLNYYL 397
           A+ G          LGI  G V     A     I++A++     S     YYL
Sbjct: 366 ALIGIPPAAVFLGKLGIFFGLVKTDMFAL---GILFAIA-----SLISAGYYL 410


>gb|AAF03715.1| (AF182322) NADH dehydrogenase subunit 4 [Drosophila albomicans]
           Length = 446
           
 Score = 89.3 bits (218), Expect = 9e-17
 Identities = 85/331 (25%), Positives = 151/331 (44%), Gaps = 26/331 (7%)

Query: 33  FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
           F  P+ +  K  +++ V +    F          Y  EI   +G D +S   ++    + 
Sbjct: 10  FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69

Query: 93  GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
               ++   V +  N+K L LL  +L+   L+  F S   F FY+F+E S + +  LI  
Sbjct: 70  ALMLTASESVNKYNNYKNLFLLNVVLLLLLLVLTFSSMSLFMFYLFLESSLIPTLFLILG 129

Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
                +  +A    L  ++  S  +++ +  +  + G +N  L +      D        
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMNNFMFNYDLLYFCMMC 189

Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
           + ++K  +F +H+WLP AH  A    S IL+GI +K   YG++ + ++  L  +K   I 
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249

Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYGATL-YSL--AHAM 314
             +S+  GV+++ +   Q + K L+AY +V+ MG  L GL T + +G  + YSL  AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCVSYSLMIAHGL 309

Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
              GLF               + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332


>emb|CAB67207.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit 2 [Oenothera
           elata subsp. hookeri] >gi|6723827|emb|CAB67238.1|
           (AJ271079) NADH-plastoquinone oxidoreductase subunit 2
           [Oenothera elata subsp. hookeri]
           Length = 510
           
 Score = 89.3 bits (218), Expect = 9e-17
 Identities = 81/324 (25%), Positives = 141/324 (43%), Gaps = 42/324 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMEL-----SAVSSYALIASQDREAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E      S +S Y     +  EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGATDLITIFVAPECFSLCSSLLSGYTKKDVRSNEATMKYLLMGGA 189

Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
           +S +L+     +Y  +G            +N ++ +  G+     L    + +  K    
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSPA 247

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
           P H W PD +  + T V + LS   V + +      + + D+ F          L+  AI
Sbjct: 248 PSHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFFFSSFEWHPLLEILAI 304

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
           LSM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+  G     + + +F   + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDANGGYASMITYMLFYISMNLG 364

Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
             A I            +D   L +++  L +S+A+  L++ GL    G   K +L    
Sbjct: 365 TFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCG 424

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
            +  + + VS G   S   + YYL
Sbjct: 425 WQAGLYFLVSIGLFTSVVSIYYYL 448


>sp|P56911|NUN2_RHIME NADH DEHYDROGENASE I CHAIN N 2 (NADH-UBIQUINONE OXIDOREDUCTASE
           CHAIN N 2)
           Length = 344
           
 Score = 89.3 bits (218), Expect = 9e-17
 Identities = 75/293 (25%), Positives = 132/293 (44%), Gaps = 34/293 (11%)

Query: 135 MELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASE 189
           +EL  + +Y L        +  EAA KY++L   ++ + +  + +IY  TG   ++  +E
Sbjct: 1   LELMVLCTYVLTGFLRKERRSNEAALKYVILGAVSTAIFLYGVSLIYGLTGTTQLDRMAE 60

Query: 190 V--GLRDDTPLRLAAI----SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIY 243
              G   D  L LA +     L+ K G  P H+W+PD +  A T +++ +S +A KA  +
Sbjct: 61  AVSGGPLDPALLLAVVFIVAGLVFKIGAVPFHMWVPDVYEGAPTTITAFMS-VAPKAAGF 119

Query: 244 GLILLSNLGDLS-------FLKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLG 296
            +IL   L  L         +   A+ +MA G  +A++Q N KRLLAY +++  G+ + G
Sbjct: 120 AVILRVFLNPLVEASNAWIIVAAIAVATMALGSFVALVQDNFKRLLAYSSIAHAGFAIFG 179

Query: 297 LSTG---NVYGATLYSLAHAMFKGGLFLGVGAIIDARKR-------KDLKYLGSRNILLI 346
           +  G    +    LY L +     G+F   GA+I  R         +D       +  L 
Sbjct: 180 VVAGGQDGIASVMLYLLIYTFMNLGIF---GAVIMMRNGDFSGEVIEDYAGFAKFHPGLA 236

Query: 347 VSIAILSLAISGLGITIGGVAKSY--LATTEKAIIYAVSFGTAFSFSKLNYYL 397
           + + +   +++G+  T G  AK Y  +A  E+  +         S     +Y+
Sbjct: 237 LLMLLYLFSLAGIPPTAGFFAKFYVLVALVERGFVALAVIAVLLSVVSAYFYI 289


>gb|AAF73308.1| (AF188850) NADH dehydrogenase subunit B [Zamia furfuracea]
           Length = 470
           
 Score = 89.3 bits (218), Expect = 9e-17
 Identities = 87/323 (26%), Positives = 144/323 (43%), Gaps = 40/323 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           LL L+ + L G  +  + D    +V +E  ++ SY L     R     EA  KYLL+   
Sbjct: 112 LLFLLTAALGGMVLCGANDLVTIFVALECFSLCSYLLSGYTKRDVXSNEATMKYLLMGGA 171

Query: 164 ASYVLILALGMIYFQTGYLNVELASEVG------LRDDTPLRLAAISLIL----KAGIFP 213
           +S +L+     +Y  +G   +EL   V       + +   + +A IS+ +    K  + P
Sbjct: 172 SSSILVYGFSWLYGLSGG-EIELQEVVNGLINTQMYNSPGILIALISITVGIGFKLSLVP 230

Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAIL 263
            H W PD +  + T V + LS   V + +    L + + D+ F          L+  AIL
Sbjct: 231 FHQWTPDVYEGSPTPVVAFLS---VTSKVAASALATRIFDIIFYFSSNEWHLLLEILAIL 287

Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG---NVYGATL-YSLAHAMFKGGL 319
           SM  G ++AI Q + KR+LAY ++ Q+GYI++G+  G   N Y + + Y L +     G 
Sbjct: 288 SMILGNLIAITQTSMKRMLAYSSMGQIGYIIIGIIAGDSKNGYASMITYMLFYIFMNLGT 347

Query: 320 FLGV---GAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATT 374
           F  +   G        +D   L +++     S+A+  L++ G+    G   K YL     
Sbjct: 348 FACIVLFGLRTGTDNIRDYAGLYTKDPFSAFSLALCLLSLGGIPPLAGFFGKLYLFWCGW 407

Query: 375 EKAIIYAVSFGTAFSFSKLNYYL 397
           +  +   VS G   S   + YYL
Sbjct: 408 QAGLYLLVSIGPFMSVISIYYYL 430


>gb|AAF77285.1| (AF200832) NADH dehydrogenase subunit 4 [Drosophila sechellia]
           Length = 446
           
 Score = 89.3 bits (218), Expect = 9e-17
 Identities = 85/331 (25%), Positives = 148/331 (44%), Gaps = 26/331 (7%)

Query: 33  FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
           F  PL +     +++ + +  + F          Y  EI   +G D +S   ++    + 
Sbjct: 10  FLTPLCFMSNMYWMVQIMMVFISFIFLVMNNFMNYWSEISYFLGCDMLSYGLILLSLWIC 69

Query: 93  GASSLYL--VKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
               L    + +  N+K L LL  +++   LI  F S   F FY+F E S + +  LI  
Sbjct: 70  SLMLLASESINKYNNYKNLFLLNIVILLLLLILTFSSMSLFMFYLFFESSLIPTLFLILG 129

Query: 149 ----QDREAAFKYLLL-SMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
                +R  A  YLL  ++  S  +++ +  +  + G +N  L +      D        
Sbjct: 130 WGYQPERLQAGVYLLFYTLLVSLPMLIGIFYVMNKIGSMNFYLMNNFMFNHDLLYFCLLC 189

Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGL---ILLSNLGDLSFLKPF 260
           + ++K  +F +H+WLP AH  A    S IL+GI +K   YGL   I    L +L +   +
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVIAFLQLMNLKYSFVW 249

Query: 261 AILSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYGAT---LYSLAHAM 314
             +S+  GV+++++   Q + K L+AY +V+ MG +L GL T   +G +      +AH +
Sbjct: 250 ISISLVGGVLVSLVCLRQTDLKALIAYSSVAHMGIVLSGLLTMTYWGLSGSYTLMIAHGL 309

Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
              GLF               + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSMLI 332


>gi|11466667 NADH dehydrogenase subunit 2 [Malawimonas jakobiformis]
           >gi|10178705|gb|AAG13717.1|AF295546_43 (AF295546) NADH
           dehydrogenase subunit 2 [Malawimonas jakobiformis]
           Length = 494
           
 Score = 89.3 bits (218), Expect = 9e-17
 Identities = 81/335 (24%), Positives = 153/335 (45%), Gaps = 35/335 (10%)

Query: 98  YLVKRVTNWKELSLLLLMHS-GLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DR 151
           YL     N  E S+L+L  +  ++    S +  + Y+ +EL +++ Y L + +       
Sbjct: 104 YLKNNKINSFEYSILILFSTIAMLLMTSSYNLISIYLSIELQSLAFYVLASMKRNSEYST 163

Query: 152 EAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLR---------LAA 202
           EA+FKY +L + +S  L+L   ++Y  TG  N+E   ++ + + + +          L  
Sbjct: 164 EASFKYFILGVFSSGFLLLGFSILYGITGINNIEQFYKLFIINYSNIEHISLYISLFLII 223

Query: 203 ISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLIL-------LSNLGDLS 255
           IS + K G  P H+WLPD +  +   V++  + I  K  I  LI+          + +L+
Sbjct: 224 ISFLFKIGAAPFHMWLPDVYEGSPLSVTAFFA-ITPKIVILSLIIRLFIYTFYDIIEELN 282

Query: 256 FLKPFA-ILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGL---STGNVYGATLYSLA 311
           ++   + I SMA     A+ Q    RLLAY  +  +GYIL+G+   S  ++  + LY + 
Sbjct: 283 YIFIISSITSMALASFFALYQKKIIRLLAYSAIGHIGYILIGITSSSINSIQSSLLYIIV 342

Query: 312 HAMFKGGLFLGVGAIIDARKRKDLKY------LGSRNILLIVSIAILSLAISGLGITIGG 365
           + +    ++  V ++       ++KY      L  +N +L  S  +L  +++G+    G 
Sbjct: 343 YIIMTINIYSIVISLYSNNNNIEIKYIKELINLSKQNPILAFSFTMLLFSMAGIPPLAGF 402

Query: 366 VAKSYL--ATTEKAIIYAVSFGTAFSFSKLNYYLW 398
             K Y+  +    ++   V  G   S     YY++
Sbjct: 403 FNKLYIFSSAINVSMYLLVFIGILTSVISAVYYIY 437


>gb|AAG26099.1| (AF123773) NADH dehydrogenase subunit B [Cabomba caroliniana]
           Length = 486
           
 Score = 89.3 bits (218), Expect = 9e-17
 Identities = 84/323 (26%), Positives = 142/323 (43%), Gaps = 40/323 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L     R     EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDVRSNEATMKYLLMGGA 189

Query: 164 ASYVLILALGMIYFQTGYLNVELASEVG------LRDDTPLRLAAISLILKAGI----FP 213
           +S +L+     +Y  +G   +EL   V       + +   + +A IS+    G      P
Sbjct: 190 SSSILVYGFSWLYGSSGG-EIELQEIVNGLINTQMYNSPGISIALISITAGIGFKLSPAP 248

Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAIL 263
            H W PD +  + T V + LS   V + +      + + D+ F          L+  AIL
Sbjct: 249 FHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAIL 305

Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGV 323
           SM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+        + + +F   + LG 
Sbjct: 306 SMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGT 365

Query: 324 GAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATT 374
            A I            +D   L +++  L +S A+  L++ G+    G   K YL     
Sbjct: 366 FACIVSFGLRTGTDNIRDYAGLYTKDPFLALSSALCLLSLGGIPPLAGFFGKLYLFWCGW 425

Query: 375 EKAIIYAVSFGTAFSFSKLNYYL 397
           +  + + VS G   S   + YYL
Sbjct: 426 QAGLYFLVSIGLLTSVVSIYYYL 448


>gb|AAD52735.1|AF123677_1 (AF123677) NADH dehydrogenase [Bacopa caroliniana]
           Length = 702
           
 Score = 88.9 bits (217), Expect = 1e-16
 Identities = 79/288 (27%), Positives = 131/288 (45%), Gaps = 33/288 (11%)

Query: 70  EIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAF 123
           + G E G  +D ++S  L+       +V   S  Y+       K  + +    + ++G  
Sbjct: 72  DFGFEFGYLIDPLTSIMLMLITTVGIMVLIYSDKYMTHDQGYLKFFAYMSFFSTSMLGLV 131

Query: 124 ISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQ 178
            S +    Y+F EL  + SY LI           A  K  + +    + L+L +   Y+ 
Sbjct: 132 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWI 191

Query: 179 TGYLNVELASEV------GLRDDTP-LRLAAISL----ILKAGIFPLHVWLPDAHSNAKT 227
           TG        E+          ++P + L A+ L    I K+  FPLHVWLPDA     T
Sbjct: 192 TGSFEFRDLFEIFNNLIYNNEVNSPFVTLCAVLLFAGAIAKSAQFPLHVWLPDA-MEGPT 250

Query: 228 YVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGVIMAILQFNAK 279
            +S+++    + A   G+ L++ L  L  + P+         I+++  G  +A+ Q + K
Sbjct: 251 PISALIHAATMVAA--GVFLVARLLPLFIVIPYIMNFISLIGIITVLLGATLALAQKDIK 308

Query: 280 RLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
           R LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G++I
Sbjct: 309 RGLAYSTMSQLGYMMLALGMGSCRSALFHLITHAYSKALLFLGSGSVI 356


>emb|CAB59327.1| (AJ236304) NADH dehydrogenase subunit F [Pentas lanceolata]
           Length = 732
           
 Score = 88.9 bits (217), Expect = 1e-16
 Identities = 90/334 (26%), Positives = 157/334 (46%), Gaps = 52/334 (15%)

Query: 114 LMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVL 168
           L  + ++G   S +    Y+F EL  V SY LI           A  K  + +    + L
Sbjct: 130 LFSTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGL 189

Query: 169 ILALGMIYFQTG----------YLNVELASEVGLRDDTPLRLAAISL----ILKAGIFPL 214
           +L +   ++ TG          + N+ + +EV     T   L A+ L    + K+  FPL
Sbjct: 190 LLGILGFFWITGSFEFRDLFEIFNNLIVTNEVSFAFVT---LCAVLLFAGAVAKSAQFPL 246

Query: 215 HVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI--------LSMA 266
           HVWLPDA     T +S+++    + A   G+ L++ L     + P+ +        +++ 
Sbjct: 247 HVWLPDA-MEGPTPISALIHAATMVAA--GIFLVARLLPFFIVIPYIMNLISLVGTVTLL 303

Query: 267 FGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAI 326
            G  +A+ Q + KR LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G+I
Sbjct: 304 LGATLALAQKDIKRGLAYSTMSQLGYMMLALGLGSYRSALFHLITHAYSKALLFLGSGSI 363

Query: 327 IDA---------RKRKDLKYLG--SRNILLIVSIAIL-SLAISGLGITIGGVAK------ 368
           I +          K +++  +G  ++++ L  S  ++ +L+I G+       +K      
Sbjct: 364 IHSMETVVGYSPHKSQNMALMGGLTKHVPLTKSTFLVGTLSICGIPPLACFWSKDEILTD 423

Query: 369 SYLATTEKAIIYAVSFG-TAFSFSKLNYYLWKGY 401
           S+L +T  AII  V+ G TAF   ++    ++G+
Sbjct: 424 SWLYSTSFAIIAWVTAGLTAFYMFRIYLLTFEGH 457


>gb|AAF03711.1| (AF182320) NADH dehydrogenase subunit 4 [Drosophila immigrans]
           Length = 446
           
 Score = 88.9 bits (217), Expect = 1e-16
 Identities = 90/337 (26%), Positives = 152/337 (44%), Gaps = 38/337 (11%)

Query: 33  FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFL-----IA 87
           F  P+ +  K  +++ V L  + F          Y  EI   +G D +S   +     I 
Sbjct: 10  FISPICFINKMYWMVQVLLFFISFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69

Query: 88  EFLVFGASSLYLVKRVTNWKELSL-----LLLMHSGLIGAFISKDYFNFYVFMELSAVSS 142
             ++  + S+Y   +  N+K L L     LLL+   L+  F S   F FY+F E S + +
Sbjct: 70  SLMLLASESVY---KYNNYKNLFLFNVVMLLLL---LVLTFSSMSLFMFYLFFESSLIPT 123

Query: 143 YALIAS-----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTP 197
             LI       +  +A    L  ++  S  +++ +  +  + G +N  L +      D  
Sbjct: 124 LFLILGWGYQPERLQAGIYLLFYTLLVSLPMLVGIFYLMNKMGTMNFYLMNNFMFNYDLL 183

Query: 198 LRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFL 257
                 + ++K  +F +H+WLP AH  A    S IL+GI +K   YG++ + +L  L  +
Sbjct: 184 YFCMMCAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISLLQLMNM 243

Query: 258 KPFAI---LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL 310
           K   I   +S+  GV+++ +   Q + K L+AY +V+ MG  L GL T + +G    YSL
Sbjct: 244 KYSFIWVSISLVGGVLVSFVCLRQTDLKTLIAYSSVAHMGIALAGLLTMSYWGLCGSYSL 303

Query: 311 --AHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
             AH +   GLF               + LGSR++L+
Sbjct: 304 MIAHGLCSSGLF--------CLANVSYERLGSRSLLI 332


>gb|AAG26108.1| (AF123776) NADH dehydrogenase subunit B [Cercidiphyllum japonicum]
           Length = 484
           
 Score = 88.9 bits (217), Expect = 1e-16
 Identities = 81/324 (25%), Positives = 142/324 (43%), Gaps = 42/324 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L        +  EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGA 189

Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
           +S +L+     +Y  +G            +N ++ +  G+     L    + +  K    
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSPA 247

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
           P H W PD +  + T V + LS   V + +      + + D+ F          L+  AI
Sbjct: 248 PSHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAI 304

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
           LSM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+  G     + + +F   + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYISMNLG 364

Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
             A I            +D   L +++  L +S+A+  L++ GL    G   K +L    
Sbjct: 365 TFARIVSFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCG 424

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
            +  + + VS G   S   + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVVSIYYYL 448


>gb|AAG26117.1| (AF123779) NADH dehydrogenase subunit B [Ginkgo biloba]
           Length = 470
           
 Score = 88.9 bits (217), Expect = 1e-16
 Identities = 87/323 (26%), Positives = 145/323 (43%), Gaps = 40/323 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           LL ++ + L G F+  + D     V +E  ++ SY L     R     EA  KYLL+  T
Sbjct: 112 LLFVLTATLGGMFLCGANDLVTISVALECFSLCSYLLSGYTKRDVRSNEATMKYLLMGGT 171

Query: 164 ASYVLILALGMIYFQTGYLNVELASEVG------LRDDTPLRLAAISLIL----KAGIFP 213
           +S +L+  L  +Y  +G   +EL   V       + +   + +A IS+ +    K  + P
Sbjct: 172 SSSILVYGLSWLYGLSGG-EIELQEIVNGLINTQMYNSPGILIALISITVGIGFKLSLVP 230

Query: 214 LHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAIL 263
            H W PD +  + T V + LS   V + +  L L + + D+ F          L+  AI 
Sbjct: 231 FHQWTPDVYEGSPTPVVAFLS---VTSKVAALALATRIFDILFYFSSNEWHLLLEILAIP 287

Query: 264 SMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNV---YGATL-YSLAHAMFKGGL 319
           SM  G ++A  Q + KR+LAY ++ Q+GYI++G+  G+    Y + + Y L +     G 
Sbjct: 288 SMILGNLIATTQTSMKRMLAYSSIGQIGYIIIGIIAGDSNDGYASMMTYMLLYIFMNLGT 347

Query: 320 FLGV---GAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--ATT 374
           F  +   G        +D   L +++     S+A+  L++ G+    G   K YL     
Sbjct: 348 FACIVLFGLRTGTDNIRDYAGLYTKDPFSAFSLALCPLSLGGIPPLAGFFGKLYLFWCGW 407

Query: 375 EKAIIYAVSFGTAFSFSKLNYYL 397
           +    + VS G   S   + YYL
Sbjct: 408 QAGSYFLVSIGPFMSVISIYYYL 430


>gb|AAG26123.1| (AF123781) NADH dehydrogenase subunit B [Lactoris fernandeziana]
           Length = 486
           
 Score = 88.9 bits (217), Expect = 1e-16
 Identities = 82/324 (25%), Positives = 141/324 (43%), Gaps = 42/324 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L     R     EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVASECFSLCSYLLSGYTKRDVRSNEATTKYLLMGGA 189

Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
           +S +L+     +Y  +G            +N ++ +  G+     L    + +  K    
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSPA 247

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
           P H W PD +  + T V + LS   V + +    L + + D+ F          L+  AI
Sbjct: 248 PFHQWTPDVYEGSPTPVVAFLS---VTSKVAASALATRIFDIPFYFSSNEWHLLLEILAI 304

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
           LSM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+        + + +F   + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364

Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
             A I            +D   L +++  L +S A+  L++ GL    G   K +L    
Sbjct: 365 TFARIVLFGLRSGTDNIRDYAGLYTKDPFLALSSALCLLSLGGLPPLAGFFGKLHLFWCG 424

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
            +  + + VS G   S   + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVVSIYYYL 448


>sp|P31971|NU5C_SYNP2 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >gi|538864|pir||A40588
           NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
           Synechococcus sp. (PCC 7002) >gi|154516|gb|AAA27311.1|
           (M99378) NADH dehydrogenase subunit 5 [Synechococcus
           PCC7002]
           Length = 664
           
 Score = 88.5 bits (216), Expect = 1e-16
 Identities = 85/329 (25%), Positives = 153/329 (45%), Gaps = 45/329 (13%)

Query: 112 LLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS-QDREAAF----KYLLLSMTASY 166
           L +  S ++G   S +    Y+F EL  + SY LI    DR+AA     K  + +    +
Sbjct: 128 LSIFSSSMLGLVFSPNLVQVYIFWELVGMCSYLLIGFWYDRKAAADACQKAFVTNRVGDF 187

Query: 167 VLILALGMIYFQTGYLNVELASE-----VGLRDDTPLRLAAISLIL------KAGIFPLH 215
            L+L +  +Y+ TG    +L  +     V     + L     ++++      K+  FPLH
Sbjct: 188 GLLLGMLGLYWATGSFEFDLMGDRLMDLVSTGQISSLLAIVFAVLVFLGPVAKSAQFPLH 247

Query: 216 VWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAF-------- 267
           VWLPDA     T +S+++    + A   G+ L++ +  +    P A+  +A+        
Sbjct: 248 VWLPDA-MEGPTPISALIHAATMVAA--GVFLVARMYPVFEPIPEAMNVIAWTGATTAFL 304

Query: 268 GVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
           G  +A+ Q + K+ LAY T+SQ+GY+++ +  G       + + HA FK  LFLG G++I
Sbjct: 305 GATIALTQNDIKKGLAYSTMSQLGYMVMAMGIGGYTAGLFHLMTHAYFKAMLFLGSGSVI 364

Query: 328 ---------DARKRKDLKYLGS-RNILLIVSIAIL--SLAISGLGITIGGVAKSY---LA 372
                    +A   +D++ +G  R  + I +   L  +LAI G+    G  +K     LA
Sbjct: 365 HGMEEVVGHNAVLAQDMRLMGGLRKYMPITATTFLIGTLAICGIPPFAGFWSKDEILGLA 424

Query: 373 TTEKAIIYAVSFGTAFSFSKLNYYLWKGY 401
                +++ + + TA       +Y+++ Y
Sbjct: 425 FEANPVLWFIGWATA---GMTAFYMFRMY 450


>pir||T12400 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Sarcophyton
           glaucum mitochondrion >gi|4091914|gb|AAC99648.1|
           (AF064823) NADH dehydrogenase subunit 5 [Sarcophyton
           glaucum]
           Length = 605
           
 Score = 88.5 bits (216), Expect = 1e-16
 Identities = 98/387 (25%), Positives = 169/387 (43%), Gaps = 40/387 (10%)

Query: 78  DWVSSTFLIAEFLVFGASSLYLVKRVTNWKEL----SLLLLMHSGLIGAFISKDYFNFYV 133
           D V++  LI    + G   +Y    + +   L    S L L    ++    S +Y   ++
Sbjct: 79  DEVTAVMLIVVTTISGLVHVYSTSYMRDDPHLPRFMSYLSLFTFFMLVLITSNNYLQLFI 138

Query: 134 FMELSAVSSYALI-----ASQDREAAFKYLLLSMTASYVLILALGMIYFQTG---YLNVE 185
             E   + SY LI       Q  +AA K +L++      L+LA+ +I+ + G   Y ++ 
Sbjct: 139 GWEGVGLCSYLLINFWFTRIQANKAAIKAMLINRIGDIGLMLAIILIWKEFGVLDYCSIF 198

Query: 186 LASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGL 245
            A            L  I  + K+    LH WLPDA        + I +   V A ++ +
Sbjct: 199 SALTASSACTWICILLIIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLI 258

Query: 246 ILLSNLGDLSFLKPFAI-----LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTG 300
           I  + + D S      +     L+  F   + ++Q + K+++AY T SQ+GY+++   T 
Sbjct: 259 IRSAPIFDYSPTATIIVGLVGSLTAFFAATVGLVQSDIKKVIAYSTCSQLGYMVVACGTS 318

Query: 301 NVYGATLYSLAHAMFKGGLFLGVGAIIDA-RKRKDLKYLGS--RNI-LLIVSIAILSLAI 356
           + + +  + L HA FK  LFLG G+II A    +DL+ +G   R + L  V + I SL++
Sbjct: 319 SSFSSLYHLLTHAFFKALLFLGAGSIIHALLDEQDLRKMGGIVRGLPLTYVLMLIGSLSL 378

Query: 357 SGLGITIGGVAK---------SYLATTEKAIIYAVSFGTAFSFSKLNYYLWKGYGN---- 403
           +G     G  +K          Y   T   +    +F TAF   +L Y  +    N    
Sbjct: 379 AGFPYLSGFYSKDLILELTYNGYCLITIYWLASITAFLTAFYSFRLIYLSFLSRPNLTHL 438

Query: 404 -----EPTNFSIL-PSLTLGVLTVLVG 424
                +  ++++L P L L + ++LVG
Sbjct: 439 SAQHLQEADWNLLGPLLVLAIGSILVG 465


>pir||T13665 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Raddia
           distichophylla chloroplast (fragment)
           >gi|726178|gb|AAA64211.1| (U22007) NADH dehydrogenase F
           [Raddia distichophylla]
           Length = 704
           
 Score = 88.2 bits (215), Expect = 2e-16
 Identities = 83/322 (25%), Positives = 138/322 (42%), Gaps = 40/322 (12%)

Query: 116 HSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLIL 170
           ++ ++G   S +    Y F EL  + SY LI           A  K  + +    + L+L
Sbjct: 124 NTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLL 183

Query: 171 ALGMIYFQTGYLNVELASEVG-----------LRDDTPLRLAAISLILKAGIFPLHVWLP 219
            +   ++ TG L      ++            L       L  +  + K+  FPLHVWLP
Sbjct: 184 GILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCTFLLFLGAVAKSAQFPLHVWLP 243

Query: 220 DAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL--------SFLKPFAILSMAFGVIM 271
           DA     T +S+++    V A   G+ LL+ L  L        SF+     +++  G  +
Sbjct: 244 DA-MEGPTPISALIHATMVAA---GIFLLARLFPLFIHLPLIMSFVSLVGTITLFLGATL 299

Query: 272 AILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDAR- 330
           A+ Q + KR LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G++I +  
Sbjct: 300 ALAQIDIKRSLAYSTMSQLGYMMLALGIGSYQAALFHLITHAYSKALLFLGSGSLIHSME 359

Query: 331 --------KRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYA 381
                   K +++  +G  R  + I     L   +S  GI       S       + +Y+
Sbjct: 360 PLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWSTLSLCGIPPLACFWSKDEILSNSWLYS 419

Query: 382 VSFGTAFSFSK--LNYYLWKGY 401
             FG   SF+     +Y+++ Y
Sbjct: 420 PFFGIIASFTAGLTGFYMFRIY 441


>gb|AAF03741.1| (AF182335) NADH dehydrogenase subunit 4 [Drosophila pulaua]
           Length = 446
           
 Score = 88.2 bits (215), Expect = 2e-16
 Identities = 85/331 (25%), Positives = 150/331 (44%), Gaps = 26/331 (7%)

Query: 33  FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
           F  P+ +  K  +++ V +    F          Y  EI   +G D +S   ++    + 
Sbjct: 10  FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDVLSYGLILLSLWIC 69

Query: 93  GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
               ++   V +  N+K L LL  +L+   L+  F S   F FY+F E S + +  LI  
Sbjct: 70  ALMLTASESVNKYNNYKNLFLLNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129

Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
                +  +A    L  ++  S  +++ +  + ++ G +N  L +      D        
Sbjct: 130 WGYHPERLQAGIYLLFYTLLVSLPMLIGIFYLMYKMGTMNFYLMNNFMFNYDLLYFCMMC 189

Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
           + ++K  +F +H+WLP AH  A    S IL+GI +K   YG++ + ++  L  +K   I 
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249

Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
             +S+  GV+++ +   Q + K L+AY +V+ MG  L GL T + +G    YSL  AH +
Sbjct: 250 ISISLVGGVLISFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309

Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
              GLF               + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332


>gb|AAF03747.1| (AF182338) NADH dehydrogenase subunit 4 [Drosophila nasuta F]
           Length = 446
           
 Score = 88.2 bits (215), Expect = 2e-16
 Identities = 85/331 (25%), Positives = 150/331 (44%), Gaps = 26/331 (7%)

Query: 33  FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
           F  P+ +  K  +++ V +    F          Y  EI   +G D +S   ++    + 
Sbjct: 10  FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69

Query: 93  GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
               ++   V +  N+K L LL  +L+   L+  F S   + FY+F E S + +  LI  
Sbjct: 70  ALMLTASESVNKYNNYKNLFLLNVVLLLLLLVLTFSSMSLYMFYLFFESSLIPTLFLILG 129

Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
                +  +A    L  ++  S  +++ +  +  + G +N  L +      D        
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMNNFMFNYDLLYFCMMC 189

Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
           + ++K  +F +H+WLP AH  A    SSIL+GI +K   YG++ + ++  L  +K   I 
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSSILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249

Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
             +S+  GV+++ +   Q + K L+AY +V+ MG  L GL T + +G    YSL  AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309

Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
              GLF               + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332


>gb|AAF77299.1| (AF200833) NADH dehydrogenase subunit 4 [Drosophila simulans]
           >gi|8573467|gb|AAF77313.1| (AF200834) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573481|gb|AAF77326.1| (AF200835) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573494|gb|AAF77338.1| (AF200836) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573508|gb|AAF77351.1| (AF200837) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573521|gb|AAF77363.1| (AF200838) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           Length = 446
           
 Score = 88.2 bits (215), Expect = 2e-16
 Identities = 85/331 (25%), Positives = 148/331 (44%), Gaps = 26/331 (7%)

Query: 33  FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
           F  PL +     +++ + +  + F          Y  EI   +G D +S   ++    + 
Sbjct: 10  FLTPLCFMNNMYWMVQIMMVFISFIFLVMNNFMNYWSEISYFLGCDMLSYGLILLSLWIC 69

Query: 93  GASSLYL--VKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
               L    + +  N+K L LL  +++   LI  F S   F FY+F E S + +  LI  
Sbjct: 70  SLMLLASESINKYNNYKNLFLLNIVILLLLLILTFSSMSLFMFYLFFESSLIPTLFLILG 129

Query: 149 ----QDREAAFKYLLL-SMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
                +R  A  YLL  ++  S  +++ +  +  + G +N  L +      D        
Sbjct: 130 WGYQPERLQAGVYLLFYTLLVSLPMLIGIFYVMNKIGSMNFYLMNNFMFNYDLLYFCLLC 189

Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGL---ILLSNLGDLSFLKPF 260
           + ++K  +F +H+WLP AH  A    S IL+GI +K   YGL   I    L +L +   +
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVIAFLQLMNLKYSFVW 249

Query: 261 AILSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYGAT---LYSLAHAM 314
             +S+  GV+++++   Q + K L+AY +V+ MG +L GL T   +G +      +AH +
Sbjct: 250 ISISLVGGVLVSLVCLRQTDLKALIAYSSVAHMGIVLSGLLTMTYWGLSGSYTLMIAHGL 309

Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
              GLF               + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSMLI 332


>gb|AAG26096.1| (AF123772) NADH dehydrogenase subunit B [Asarum canadense]
           Length = 485
           
 Score = 88.2 bits (215), Expect = 2e-16
 Identities = 82/324 (25%), Positives = 140/324 (42%), Gaps = 42/324 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L     R     EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDVRSNEATTKYLLMGGA 189

Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
           +S +L+     +Y  +G            +N ++ +  G+     L    + +  K    
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSPA 247

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
           P H W PD +  + T V + LS   V + +      + + D+ F          L+  AI
Sbjct: 248 PFHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAI 304

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
           LSM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+        + + +F   + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364

Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
             A I            +D   L +++  L +S A+  L++ GL    G   K YL    
Sbjct: 365 TFARIVLFGLRTGTDNIRDYAGLYTKDPFLALSSALCLLSLGGLPPLAGFFGKLYLFWCG 424

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
            +  + + VS G   S   + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVVSIYYYL 448


>gb|AAA84181.1| (L36397) NADH dehydrogenase subunit [Catalpa sp. Olmstead 92-99]
           Length = 648
           
 Score = 87.8 bits (214), Expect = 3e-16
 Identities = 77/288 (26%), Positives = 129/288 (44%), Gaps = 33/288 (11%)

Query: 70  EIGIEVG--LDWVSSTFLI----AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAF 123
           +  +E G  +D +SS  LI       +V   S  Y+       +  + +    + ++G  
Sbjct: 72  DFSLEFGYLIDPLSSIMLILITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFSTSMLGLV 131

Query: 124 ISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILALGMIYFQ 178
            S +    Y+F EL  + SY LI           A  K  + +    + L+L +   Y+ 
Sbjct: 132 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAXNACQKAFVTNRVGDFGLLLGILGFYWI 191

Query: 179 TG----------YLNVELASEVGLRDDTPLR-LAAISLILKAGIFPLHVWLPDAHSNAKT 227
           TG          + N+   +EV     T    L     + K+  FPLHVWLPDA     T
Sbjct: 192 TGSFEFRDLFEIFNNLISNNEVNFPFGTLCAALLFAGAVAKSAQFPLHVWLPDA-MEGPT 250

Query: 228 YVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGVIMAILQFNAK 279
            +S+++    + A   G+ L++ L  L  + P+         ++++  G  +A+ Q + K
Sbjct: 251 PISALIHAATMVAA--GIFLVARLLPLFIVIPYIMNFISLIGLITVLLGATLALAQKDIK 308

Query: 280 RLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII 327
           R LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G++I
Sbjct: 309 RGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSVI 356


>gb|AAF03729.1| (AF182329) NADH dehydrogenase subunit 4 [Drosophila sulfurigaster
           sulfurigaster]
           Length = 446
           
 Score = 87.8 bits (214), Expect = 3e-16
 Identities = 84/331 (25%), Positives = 150/331 (44%), Gaps = 26/331 (7%)

Query: 33  FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
           F  P+ +  K  +++ V +    F          Y  EI   +G D +S   ++    + 
Sbjct: 10  FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69

Query: 93  GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
               ++   V +  N+K L L+  +L+   L+  F S   F FY+F E S + +  LI  
Sbjct: 70  ALMLTASESVNKYNNYKNLFLVNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129

Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
                +  +A    L  ++  S  +++ +  + ++ G +N  L +      D        
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMYKMGTMNFYLMNNFMFNYDLLYFCMMC 189

Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
           + ++K  +F +H+WLP AH  A    S IL+GI +K   YG++ + ++  L  +K   I 
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249

Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
             +S+  GV+++ +   Q + K L+AY +V+ MG  L GL T + +G    YSL  AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309

Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
              GLF               + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332


>gb|AAF03737.1| (AF182333) NADH dehydrogenase subunit 4 [Drosophila niveifrons]
           Length = 446
           
 Score = 87.8 bits (214), Expect = 3e-16
 Identities = 90/335 (26%), Positives = 152/335 (44%), Gaps = 34/335 (10%)

Query: 33  FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVS------STFLI 86
           F  P+ +  K  +++ V +    F          Y  EI   +G D +S      S ++ 
Sbjct: 10  FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69

Query: 87  AEFLVFGASSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYA 144
           A  L+   S    V +  N+K L LL  +L+   LI  F S + F FY+F E S + +  
Sbjct: 70  ALMLMASES----VNKYNNYKNLFLLNVVLLLLLLILTFSSMNLFMFYLFFESSLIPTLF 125

Query: 145 LIAS-----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLR 199
           LI       +  +A    L  ++  S  +++ +  +  + G +N  L +      D    
Sbjct: 126 LILGWGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMNNFMFNYDLLYF 185

Query: 200 LAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKP 259
               + ++K  +F +H+WLP AH  A    S IL+GI +K   YG++ + ++  L  +K 
Sbjct: 186 CMMCAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILPLLNMKY 245

Query: 260 FAI---LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL-- 310
             I   +S+  GV+++ +   Q + K L+AY +V+ MG  L GL T + +G    YSL  
Sbjct: 246 SFIWISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMI 305

Query: 311 AHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
           AH +   GLF               + LGSR++L+
Sbjct: 306 AHGLCSSGLF--------CLANVSYERLGSRSLLI 332


>pir||B82495 probable NADH dehydrogenase VCA0157 [imported] - Vibrio cholerae
           (group O1 strain N16961) >gi|9657546|gb|AAF96070.1|
           (AE004356) NADH dehydrogenase, putative [Vibrio
           cholerae]
           Length = 891
           
 Score = 87.8 bits (214), Expect = 3e-16
 Identities = 108/368 (29%), Positives = 174/368 (46%), Gaps = 39/368 (10%)

Query: 41  VKALYLLGVFLPMLLFP-LSRGGVVGGYPREIGIEVGLDWVSS------TFLIAEFLVFG 93
           V A  L    LP+LLF  +      GG   ++    GLD   S      +FL A  L+ G
Sbjct: 16  VSARLLPFAVLPILLFGWVFYWHQTGGNAWQVTWVPGLDLNLSFRLDGLSFLFAS-LITG 74

Query: 94  ASSLYLVKRVTNWKELSL-------LLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALI 146
             +L  +  +   KE +        L L    ++G  +S +    ++F EL+ ++SY LI
Sbjct: 75  IGALIQIYALAYMKEKAARFSFHLYLTLFMLAMLGVVVSDNILLLFIFWELTTITSYLLI 134

Query: 147 A-SQDREAAFKYLLLSM--TASYVLILALGMIYFQTGYLNVELASEVGLRDDT---PLRL 200
             + D+  + K  L S+  T +  L L  G+I       + +++  +   D     P  +
Sbjct: 135 GFNHDKPVSRKNALQSLLVTGAGGLALLAGLILLGLMANSYQISVIIEHADHIAQHPWFM 194

Query: 201 AAISLIL-----KAGIFPLHVWLPDAHSNAKTYVSSIL-SGIAVKAPIYGLILLSNL--- 251
            ++ L+L     K+  FP H WLP+A + A T VS+ L S   VKA IY L  LS +   
Sbjct: 195 PSLILVLLGAFTKSAQFPFHFWLPNAMA-APTPVSAYLHSATMVKAGIYLLARLSPIYAS 253

Query: 252 GDLSF--LKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMG--YILLGLSTG-NVYGAT 306
            D  F  L     ++  +  ++A  Q + K +LAY T   +G   +LLGL T   +  A 
Sbjct: 254 SDFWFYCLTIVGAVTALWCALLAFKQTDLKLMLAYSTNVALGKLTLLLGLGTEVALTAAV 313

Query: 307 LYSLAHAMFKGGLFLGVGAIIDA---RKRKDLKYLGSRNILLIVSIAILSLAISGLGITI 363
           L+  AH+ +K  LF+ VG I  A   R+R+ L  L S  +L +++  I +L+ SG+   +
Sbjct: 314 LFIFAHSFYKAALFMVVGNIDKATGTREREKLGNLKSVLLLSLIAAVIAALSKSGVAPML 373

Query: 364 GGVAKSYL 371
           G ++K Y+
Sbjct: 374 GFLSKEYM 381


>gb|AAG26129.1| (AF123783) NADH dehydrogenase subunit B [Saururus cernuus]
           Length = 482
           
 Score = 87.8 bits (214), Expect = 3e-16
 Identities = 81/324 (25%), Positives = 140/324 (43%), Gaps = 42/324 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L     R     EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDVRSNEATTKYLLMGGA 189

Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
           +S +L+     +Y  +G            +N ++ +  G+     L    + +  K    
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSPA 247

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
           P H W PD +  + T V + LS   V + +      + + D+ F          L+  AI
Sbjct: 248 PFHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAI 304

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
           LSM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+        + + +F   + +G
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNVG 364

Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
             A I            +D   L +++  L +S A+  L++ GL    G   K YL    
Sbjct: 365 TFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSSALCLLSLGGLPPLAGFFGKLYLFWCG 424

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
            +  + + VS G   S   + YYL
Sbjct: 425 WQAGLYFLVSIGLLTSVVSIYYYL 448


>pir||S26025 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - pig
           roundworm mitochondrion
           Length = 528
           
 Score = 87.4 bits (213), Expect = 3e-16
 Identities = 85/328 (25%), Positives = 152/328 (45%), Gaps = 31/328 (9%)

Query: 96  SLYLVKRVTNWKELSLLLLMHSGLIGAFI-SKDYFNFYVFMELSAVSSYALIASQDR--- 151
           S Y +    N+     +LL+  G + + I S   F+  V  +L  +SS+ L+   +    
Sbjct: 66  STYYLSGELNFNYYYFMLLVFVGSMFSLIFSSGCFSMLVSWDLLGISSFFLVLFYNNWDS 125

Query: 152 -EAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLILKAG 210
              A   +L +    + L +      F + Y  + L+    L     L LA+ +   K+ 
Sbjct: 126 CSGAMNTVLTNRLGDFFLFVFFSSTIFSSYYF-LSLSFFCWL-SSLMLLLASFT---KSA 180

Query: 211 IFPLHVWLPDAHSNAKTYVSSIL-SGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFGV 269
            FP   WLP A S A T +SS++ S   V A   GL+L+ N  ++   K   ++ M  GV
Sbjct: 181 QFPFSGWLPKAMS-APTPISSLVHSSTLVTA---GLVLIMNFSEMILNKDVIMIIMVVGV 236

Query: 270 -------IMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
                  + A+++ + K+++A  T+SQMG+ +L +  G  + + ++ L+HA+FK  LF+ 
Sbjct: 237 FTMFFSSMAALVEEDLKKVVALSTLSQMGFSMLTVGIGLSFVSFIHLLSHALFKSCLFMQ 296

Query: 323 VGAIIDA----RKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAI 378
           VG +I      +  ++   LG+    + + + +    + GL  + G V+K Y+     + 
Sbjct: 297 VGYLIHCSLGQQDGRNYSNLGNVPYFIQLQLLVTLFCLCGLVFSSGAVSKDYILEFFFSN 356

Query: 379 IYAVSFGTAFSFSKL-----NYYLWKGY 401
            + V F   F FS       +Y LWKG+
Sbjct: 357 FFMVVFACMFFFSVFLTFGYSYRLWKGF 384


>gi|5834883 NADH dehydrogenase subunit 5 [Ascaris suum]
           >gi|1171821|sp|P24884|NU5M_ASCSU NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 5 >gi|559499|emb|CAA38174.1|
           (X54253) ND5 protein [Ascaris suum]
           Length = 547
           
 Score = 87.4 bits (213), Expect = 3e-16
 Identities = 85/328 (25%), Positives = 152/328 (45%), Gaps = 31/328 (9%)

Query: 96  SLYLVKRVTNWKELSLLLLMHSGLIGAFI-SKDYFNFYVFMELSAVSSYALIASQDR--- 151
           S Y +    N+     +LL+  G + + I S   F+  V  +L  +SS+ L+   +    
Sbjct: 66  STYYLSGELNFNYYYFMLLVFVGSMFSLIFSSGCFSMLVSWDLLGISSFFLVLFYNNWDS 125

Query: 152 -EAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLILKAG 210
              A   +L +    + L +      F + Y  + L+    L     L LA+ +   K+ 
Sbjct: 126 CSGAMNTVLTNRLGDFFLFVFFSSTIFSSYYF-LSLSFFCWL-SSLMLLLASFT---KSA 180

Query: 211 IFPLHVWLPDAHSNAKTYVSSIL-SGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFGV 269
            FP   WLP A S A T +SS++ S   V A   GL+L+ N  ++   K   ++ M  GV
Sbjct: 181 QFPFSGWLPKAMS-APTPISSLVHSSTLVTA---GLVLIMNFSEMILNKDVIMIIMVVGV 236

Query: 270 -------IMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
                  + A+++ + K+++A  T+SQMG+ +L +  G  + + ++ L+HA+FK  LF+ 
Sbjct: 237 FTMFFSSMAALVEEDLKKVVALSTLSQMGFSMLTVGIGLSFVSFIHLLSHALFKSCLFMQ 296

Query: 323 VGAIIDA----RKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAI 378
           VG +I      +  ++   LG+    + + + +    + GL  + G V+K Y+     + 
Sbjct: 297 VGYLIHCSLGQQDGRNYSNLGNVPYFIQLQLLVTLFCLCGLVFSSGAVSKDYILEFFFSN 356

Query: 379 IYAVSFGTAFSFSKL-----NYYLWKGY 401
            + V F   F FS       +Y LWKG+
Sbjct: 357 FFMVVFACMFFFSVFLTFGYSYRLWKGF 384


>gb|AAA64192.1| (U21988) NADH dehydrogenase F [Danthoniopsis petiolata]
           Length = 704
           
 Score = 87.4 bits (213), Expect = 3e-16
 Identities = 84/322 (26%), Positives = 138/322 (42%), Gaps = 39/322 (12%)

Query: 116 HSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLIL 170
           ++ ++G   S +    Y F EL  + SY LI           A  K  + +    + L+L
Sbjct: 128 NTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLL 187

Query: 171 ALGMIYFQTGYLNVELASEVG-----------LRDDTPLRLAAISLILKAGIFPLHVWLP 219
            +   ++ TG L      ++            L       L  +  I K+  FPLHVWLP
Sbjct: 188 GILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLFAFLLFLGAIAKSAQFPLHVWLP 247

Query: 220 DAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL--------SFLKPFAILSMAFGVIM 271
           DA     T +S+++    + A   G+ LL+ L  L        SF+     +++  G  +
Sbjct: 248 DA-MEGPTPISALIHAATMVAA--GIFLLARLFPLFISLPLIMSFISLVGTITLFLGATL 304

Query: 272 AILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDAR- 330
           A+ Q + KR LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G+II +  
Sbjct: 305 ALAQRDIKRSLAYSTMSQLGYMMLALGIGSYQAALFHLITHAYSKALLFLGSGSIIHSME 364

Query: 331 --------KRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYA 381
                   K +++  +G  R  + I     L   +S  GI       S       + +Y+
Sbjct: 365 PLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCATLSLCGIPPLACFWSKDEILSNSWLYS 424

Query: 382 VSFGTAFSFSK--LNYYLWKGY 401
             FG   SF+     +Y+++ Y
Sbjct: 425 PFFGIIASFTAGLTAFYMFRIY 446


>gi|11466005 NADH dehydrogenase ND2 subunit [Nicotiana tabacum]
           >gi|11466028|ref|NP_054570.1| NADH dehydrogenase ND2
           subunit [Nicotiana tabacum]
           >gi|3915776|sp|P06256|NU2C_TOBAC NADH-PLASTOQUINONE
           OXIDOREDUCTASE CHAIN 2, CHLOROPLAST
           >gi|2924275|emb|CAA77428.1| (Z00044) NADH dehydrogenase
           ND2 subunit [Nicotiana tabacum]
           >gi|2924284|emb|CAA77437.1| (Z00044) NADH dehydrogenase
           ND2 subunit [Nicotiana tabacum]
           Length = 510
           
 Score = 87.4 bits (213), Expect = 3e-16
 Identities = 80/324 (24%), Positives = 140/324 (42%), Gaps = 42/324 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L        +  EA  KYLL+   
Sbjct: 130 LLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGA 189

Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
           +S +L+     +Y  +G            +N ++ +  G+     L    + +  K    
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSPA 247

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
           P H W PD +  + T V + LS   V + +      + + D+ F          L+  AI
Sbjct: 248 PSHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAI 304

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
           LSM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+        + + +F   + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364

Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
             A I            +D   L +++  L +S+A+  L++ GL    G   K YL    
Sbjct: 365 TFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCG 424

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
            +  + + V  G   S   + YYL
Sbjct: 425 WQAGLYFLVLIGLLTSVVSIYYYL 448


>pir||T14229 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Oldenlandia
           corymbosa chloroplast (fragment)
           >gi|3954991|emb|CAA10213.1| (AJ130837) NADH
           dehydrogenase [Oldenlandia corymbosa]
           Length = 721
           
 Score = 87.4 bits (213), Expect = 3e-16
 Identities = 84/328 (25%), Positives = 147/328 (44%), Gaps = 46/328 (14%)

Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILA 171
           + ++G   S +    Y+F  L  VSSY LI           A  K  + +    + L+L 
Sbjct: 133 TSMLGLVTSSNLIQIYIFWXLVGVSSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLG 192

Query: 172 LGMIYFQTGYLNVELASEV--GLRDDTPLRLAAISL---------ILKAGIFPLHVWLPD 220
           +   ++ TG        E+   L  D  +    ++L         + K+  FPLHVWLPD
Sbjct: 193 ILGFFWITGSFEFRDLFEILNNLILDNEVNFGFVTLCAVLLFAGAVAKSAQFPLHVWLPD 252

Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGVIMA 272
           A        + I +   V A   G+ L++ L  L  + P+         I+++  G  +A
Sbjct: 253 AMEGPTPISALIXAATMVXA---GIFLVARLLPLFIVIPYIMNLISLVGIITLLLGATLA 309

Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA--- 329
           + Q + KR LAY T+S  GY++L L  G+   A  + + HA  K  LFLG G+II +   
Sbjct: 310 LAQKDIKRGLAYSTMSPXGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSMET 369

Query: 330 ------RKRKDLKYLG--------SRNILLIVSIAILSL-AISGLGITIGGVAKSYLATT 374
                  K +++  +G        +++  LI ++++  +  ++        +A S+L +T
Sbjct: 370 IVGYSPHKSQNMALMGGLTKHGPITKSTFLIGTLSLCGIPPLACFWSKDEILADSWLYST 429

Query: 375 EKAIIYAVSFG-TAFSFSKLNYYLWKGY 401
             AII +V+ G TAF   ++    ++G+
Sbjct: 430 SFAIIASVTAGLTAFYMFRIYLLTFEGH 457


>gb|AAF03713.1| (AF182321) NADH dehydrogenase subunit 4 [Drosophila albomicans]
           >gi|6103676|gb|AAF03719.1| (AF182324) NADH dehydrogenase
           subunit 4 [Drosophila albomicans]
           >gi|6103688|gb|AAF03727.1| (AF182328) NADH dehydrogenase
           subunit 4 [Drosophila sulfurigaster neonasuta]
           >gi|6103700|gb|AAF03735.1| (AF182332) NADH dehydrogenase
           subunit 4 [Drosophila nasuta] >gi|6103712|gb|AAF03743.1|
           (AF182336) NADH dehydrogenase subunit 4 [Drosophila
           nasuta I] >gi|6103715|gb|AAF03745.1| (AF182337) NADH
           dehydrogenase subunit 4 [Drosophila nasuta J]
           Length = 446
           
 Score = 87.4 bits (213), Expect = 3e-16
 Identities = 85/331 (25%), Positives = 149/331 (44%), Gaps = 26/331 (7%)

Query: 33  FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
           F  P+ +  K  +++ V +    F          Y  EI   +G D +S   ++    + 
Sbjct: 10  FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69

Query: 93  GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
               ++   V +  N+K L LL  +L+   L+  F S   F FY+F E S + +  LI  
Sbjct: 70  ALMLTASESVNKYNNYKNLFLLNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129

Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
                +  +A    L  ++  S  +++ +  +  + G +N  L +      D        
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMNNFMFNYDLLYFCMMC 189

Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
           + ++K  +F +H+WLP AH  A    S IL+GI +K   YG++ + ++  L  +K   I 
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249

Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
             +S+  GV+++ +   Q + K L+AY +V+ MG  L GL T + +G    YSL  AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309

Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
              GLF               + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332


>gb|AAF03721.1| (AF182325) NADH dehydrogenase subunit 4 [Drosophila sulfurigaster
           albostrigata]
           Length = 446
           
 Score = 87.4 bits (213), Expect = 3e-16
 Identities = 85/331 (25%), Positives = 149/331 (44%), Gaps = 26/331 (7%)

Query: 33  FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
           F  P+ +  K  +++ V +    F          Y  EI   +G D +S   ++    + 
Sbjct: 10  FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69

Query: 93  GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
               ++   V +  N+K L LL  +L+   L+  F S   F FY+F E S + +  LI  
Sbjct: 70  ALMLTASESVNKYNNYKNLFLLNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129

Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
                +  +A    L  ++  S  +++ +  +  + G +N  L +      D        
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMNNFMFNYDLLYFCMMC 189

Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
           + ++K  +F +H+WLP AH  A    S IL+GI +K   YG++ + ++  L  +K   I 
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249

Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
             +S+  GV+++ +   Q + K L+AY +V+ MG  L GL T + +G    YSL  AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309

Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
              GLF               + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332


>pir||S01187 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - fruit fly
           (Drosophila melanogaster) mitochondrion
           >gi|7799410|emb|CAB91059.1| (AJ400907) NADH
           dehydrogenase subunit 4 [Drosophila melanogaster]
           >gi|8573382|gb|AAF77234.1| (AF200828) NADH dehydrogenase
           subunit 4 [Drosophila melanogaster]
           >gi|8573395|gb|AAF77246.1| (AF200829) NADH dehydrogenase
           subunit 4 [Drosophila melanogaster]
           Length = 446
           
 Score = 87.0 bits (212), Expect = 4e-16
 Identities = 80/297 (26%), Positives = 139/297 (45%), Gaps = 26/297 (8%)

Query: 67  YPREIGIEVGLDWVSSTFLIAEFLVFGASSLY--LVKRVTNWKELSLL--LLMHSGLIGA 122
           Y  EI   +G D +S   ++    +     L   ++ +  N+K L LL  +++   LI  
Sbjct: 44  YWSEISYFLGCDMLSYGLILLSLWICSLMLLASEMINKHNNYKNLFLLNIIILLLLLILT 103

Query: 123 FISKDYFNFYVFMELSAVSSYALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYF 177
           F S   F FY+F E S + +  LI       +R  A  YLL  ++  S  +++ +  +  
Sbjct: 104 FSSMSLFMFYLFFESSLIPTLFLILGWGYQPERLQAGLYLLFYTLLVSLPMLIGIFYVMN 163

Query: 178 QTGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIA 237
           + G +N  L +      D        + ++K  +F +H+WLP AH  A    S IL+GI 
Sbjct: 164 KIGSMNFYLMNNFMFNYDLLYFCLLCAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIM 223

Query: 238 VKAPIYGLILLSNLGDLSFLK---PFAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMG 291
           +K   YG++ + +   L  LK    +  +S+  GV+++++   Q + K L+AY +V+ MG
Sbjct: 224 LKLGGYGMLRVISFLQLMNLKYSFVWISISLVGGVLVSLVCLRQTDLKALIAYSSVAHMG 283

Query: 292 YILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
            +L GL T   +   G+    +AH +   GLF               + LGSR++L+
Sbjct: 284 IVLSGLLTMTYWGLCGSYTLMIAHGLCSSGLF--------CLANVSYERLGSRSMLI 332


>gi|11497569 NADH dehydrogenase ND2 subunit [Spinacia oleracea]
           >gi|11497596|ref|NP_055002.1| NADH dehydrogenase ND2
           subunit [Spinacia oleracea] >gi|7636150|emb|CAB88772.1|
           (AJ400848) NADH dehydrogenase ND2 subunit [Spinacia
           oleracea] >gi|7636177|emb|CAB88799.1| (AJ400848) NADH
           dehydrogenase ND2 subunit [Spinacia oleracea]
           Length = 510
           
 Score = 87.0 bits (212), Expect = 4e-16
 Identities = 80/324 (24%), Positives = 140/324 (42%), Gaps = 42/324 (12%)

Query: 111 LLLLMHSGLIGAFI--SKDYFNFYVFMELSAVSSYALIAS-----QDREAAFKYLLLSMT 163
           LL ++ + L G F+  + D    +V  E  ++ SY L        +  EA  KYLL+   
Sbjct: 130 LLFILTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGA 189

Query: 164 ASYVLILALGMIYFQTG-----------YLNVELASEVGLRDDTPLRLAAISLILKAGIF 212
           +S +L+     +Y  +G            +N ++ +  G+     L    + +  K    
Sbjct: 190 SSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGI--SIALIFITVGIGFKLSPA 247

Query: 213 PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSF----------LKPFAI 262
           P H W PD +  + T V + LS   V + +      + + D+ F          L+  AI
Sbjct: 248 PSHQWTPDVYEGSPTPVVAFLS---VTSKVAASASATRIFDIPFYFSSNEWHLLLEILAI 304

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLG 322
           LSM  G ++AI Q + KR+LAY ++ Q+GY+++G+  G+        + + +F   + LG
Sbjct: 305 LSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLG 364

Query: 323 VGAII-------DARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL--AT 373
             A I            +D   L +++  L +S+A+  L++ GL    G   K YL    
Sbjct: 365 TFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKIYLFWCG 424

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYL 397
            +  + + V  G   S   + YYL
Sbjct: 425 WQAGLYFLVLIGLLTSVLSIYYYL 448


>gi|11465866 NADH dehydrogenase subunit 5 [Ochromonas danica]
           >gi|10505199|gb|AAG18381.1|AF287134_6 (AF287134) NADH
           dehydrogenase subunit 5 [Ochromonas danica]
           Length = 667
           
 Score = 87.0 bits (212), Expect = 4e-16
 Identities = 101/395 (25%), Positives = 166/395 (41%), Gaps = 74/395 (18%)

Query: 109 LSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALI-----ASQDREAAFKYLLLSMT 163
           +S L L    ++      ++   +V  E   +SSY LI       Q  ++A K +L++  
Sbjct: 113 MSYLSLFTFFMLILITGDNFLQMFVGWEGVGISSYLLINFWFTRIQANKSAIKAMLVNRI 172

Query: 164 ASYVLILALGMIYFQTGYLNVELASEVGLRDDTPL-----------RLAAISLIL----- 207
             + L+LA+  ++     L+ ++   V     TPL            +  I +I      
Sbjct: 173 GDFFLLLAIFTLFITFNTLDYDIIFSV-----TPLFINYNIGLFNYHIGLIDIICIFIFL 227

Query: 208 ----KAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGD-----LSFLK 258
               K+    LH WLPDA        + I +   V A ++ ++  S L +     LS + 
Sbjct: 228 GAMGKSAQIGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLIVRCSYLFEHSPIALSIVT 287

Query: 259 PFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILL--GLSTGNVYGATLYSLA-HAMF 315
               ++  F     + Q + K+++AY T SQ+GY++   GLS+   Y  +++ L+ HA F
Sbjct: 288 VIGSMTAFFAATTGLFQNDMKKVIAYSTCSQLGYMIFSCGLSS---YEVSIFHLSNHAFF 344

Query: 316 KGGLFLGVGAIIDA-RKRKDLKYLGSRNILLIVSIAIL---SLAISGLGITIGGVAKSYL 371
           K  LFLG GA+I A    +D++ +G    LL  S AI    SLA+ G     G  +K  +
Sbjct: 345 KALLFLGAGAVIHALSDEQDMRKMGGLKNLLPFSYAISLIGSLALVGFPFLTGFYSKDVI 404

Query: 372 --ATTEKAIIYA---------VSFGTAFSFSKLNYYLWKGYGNEPTNFSILPSLTLGVLT 420
              +     IY           +F TAF  ++L Y ++  Y N   N             
Sbjct: 405 LEISASTYTIYGQFAFFLGILATFCTAFYSTRLLYLVFLSYPNGNKN------------- 451

Query: 421 VLVGIELGGKLSKYDLLIPLAFLTFYAL-RGYLTR 454
               I L      + L  PL  L F+++  GYLT+
Sbjct: 452 ----IILNAHEGSFRLTFPLGILCFFSIFIGYLTK 482


>pir||T13409 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Micraira
           lazaridisii chloroplast (fragment)
           >gi|755837|gb|AAA64777.1| (U21972) NADH dehydrogenase F
           [Micraira lazaridisii]
           Length = 702
           
 Score = 86.6 bits (211), Expect = 6e-16
 Identities = 85/322 (26%), Positives = 140/322 (43%), Gaps = 40/322 (12%)

Query: 116 HSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLIL 170
           ++ ++G   S +    Y F EL  + SY LI           A  K  + +    + L+L
Sbjct: 126 NTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLL 185

Query: 171 ALGMIYFQTGYLNVELASEVGLR-------DDTPLRLAAISLIL----KAGIFPLHVWLP 219
            +   ++ TG L      ++          +     L A  L L    K+  FPLH+WLP
Sbjct: 186 GILGFFWITGSLEFRDLFKIANNWIPNNEMNSLLTTLCAFFLFLGAVAKSAQFPLHIWLP 245

Query: 220 DAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL--------SFLKPFAILSMAFGVIM 271
           DA     T +S+++    V A   G+ LL+ L  L        SF+     +++  G  +
Sbjct: 246 DA-MEGPTPISALIHATMVAA---GIFLLARLLPLFISLPLIMSFISLVGTITLFLGATL 301

Query: 272 AILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDAR- 330
           A+ Q + KR LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G++I +  
Sbjct: 302 ALAQRDIKRSLAYSTMSQLGYMMLALGIGSYQAALFHLITHAYSKALLFLGSGSVIHSME 361

Query: 331 --------KRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYA 381
                   K +++  +G  R  + I   A L   +S  GI       S       + +Y+
Sbjct: 362 PLVGYSPDKSQNMVLMGGLRKYVPITRTAFLWGTLSLCGIPPLACFWSKDEILSNSWLYS 421

Query: 382 VSFGTAFSFSK--LNYYLWKGY 401
             FG   SF+     +Y+++ Y
Sbjct: 422 PFFGIIASFTAGLTAFYMFRIY 443


>gb|AAF03723.1| (AF182326) NADH dehydrogenase subunit 4 [Drosophila sulfurigaster
           albostrigata]
           Length = 446
           
 Score = 86.6 bits (211), Expect = 6e-16
 Identities = 80/306 (26%), Positives = 140/306 (45%), Gaps = 18/306 (5%)

Query: 33  FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
           F  P+ +  K  +++ V +    F          Y  EI   +G D +S   ++    + 
Sbjct: 10  FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69

Query: 93  GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
               ++   V +  N+K L LL  +L+   L+  F S   F FY+F E S + +  LI  
Sbjct: 70  ALMLTASESVNKYNNYKNLFLLNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129

Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
                +  +A    L  ++  S  +++ +  +  + G +N  L +      D        
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMNNFMFNYDLLYFCMMC 189

Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
           + ++K  +F +H+WLP AH  A    S IL+GI +K   YG++ + ++  L  +K   I 
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249

Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
             +S+  GV+++ +   Q + K L+AY +V+ MG  L GL T + +G    YSL  AH +
Sbjct: 250 ISISLVGGVLISFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309

Query: 315 FKGGLF 320
              GLF
Sbjct: 310 CSSGLF 315


>gb|AAF77272.1| (AF200831) NADH dehydrogenase subunit 4 [Drosophila mauritiana]
           >gi|8573634|gb|AAF77468.1| (AF200846) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573648|gb|AAF77481.1| (AF200847) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573662|gb|AAF77494.1| (AF200848) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573677|gb|AAF77508.1| (AF200849) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573690|gb|AAF77520.1| (AF200850) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573705|gb|AAF77534.1| (AF200851) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573718|gb|AAF77546.1| (AF200852) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573732|gb|AAF77559.1| (AF200853) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573746|gb|AAF77572.1| (AF200854) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           Length = 446
           
 Score = 86.6 bits (211), Expect = 6e-16
 Identities = 79/297 (26%), Positives = 138/297 (45%), Gaps = 26/297 (8%)

Query: 67  YPREIGIEVGLDWVSSTFLIAEFLVFGASSLYL--VKRVTNWKELSLL--LLMHSGLIGA 122
           Y  EI   +G D +S   ++    +     L    + +  N+K L LL  +++   LI  
Sbjct: 44  YWSEISYFLGCDMLSYGLILLSLWICSLMLLASESINKYNNYKNLFLLNIVILLLLLILT 103

Query: 123 FISKDYFNFYVFMELSAVSSYALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYF 177
           F S   F FY+F E S + +  LI       +R  A  YLL  ++  S  +++ +  +  
Sbjct: 104 FSSMSLFMFYLFFESSLIPTLFLILGWGYQPERLQAGVYLLFYTLLVSLPMLIGIFYVMN 163

Query: 178 QTGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIA 237
           +TG +N  L +      D        + ++K  +F +H+WLP AH  A    S IL+GI 
Sbjct: 164 KTGSMNFYLMNNFMFNYDLLYFCLLCAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIM 223

Query: 238 VKAPIYGL---ILLSNLGDLSFLKPFAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMG 291
           +K   YG+   I    L ++ +   +  +S+  G++++++   Q + K L+AY +V+ MG
Sbjct: 224 LKLGGYGMLRVIAFLQLMNMKYSFVWISISLVGGMLVSLVCLRQTDLKALIAYSSVAHMG 283

Query: 292 YILLGLSTGNVYGAT---LYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
            +L GL T   +G +      +AH +   GLF               + LGSR++L+
Sbjct: 284 IVLSGLLTMTYWGLSGSYTLMIAHGLCSSGLF--------CLANVSYERLGSRSMLI 332


>emb|CAC14148.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
           [Sinorhizobium meliloti]
           Length = 568
           
 Score = 86.6 bits (211), Expect = 6e-16
 Identities = 104/407 (25%), Positives = 180/407 (43%), Gaps = 57/407 (14%)

Query: 72  GIEVGL--DWVSSTFLIAEFLVFGASSLYLVKRVTNWKE------LSLLLLMHSGLIGAF 123
           GI+V L  D +   F     L++  +++Y +  + +  E       +      +  +G  
Sbjct: 68  GIDVALRADALGMVFATVSSLLWIVAAVYSIGYMRHLHEHAQTRFFACFATSLAAAVGGA 127

Query: 124 ISKDYFNFYVFMELSAVSSYALIASQDREAAF----KYLLLSMTASY-VLILALGMIYFQ 178
            + + F   +F E+ ++ +Y L+   + E  +    KYL+  M AS  VL+ AL + Y  
Sbjct: 128 FAANLFTLVIFYEVLSLVTYPLVYHHEDEEGWRGSRKYLVYLMGASKSVLLAALALTYHI 187

Query: 179 TGYLNVELASEVGLRDDTPLRLAAISL-----ILKAGIFPLHVWLPDAHSNAKTYVSSIL 233
            G L+      +   + +   L  +         KA + P+H WLP A   A T VS++L
Sbjct: 188 AGSLDFVRGGLLTGANASATLLTVVYFCYLFGFAKAAVMPMHAWLPAAMV-APTPVSALL 246

Query: 234 SGIAVKAP--------IYGLILLSNLGDL------SFLKPFAILSMAFGVIMAILQFNAK 279
             +AV           I+ +  +S +G+L      ++L  F IL  +   + A+ + + K
Sbjct: 247 HAVAVVKMGVFCVLRVIFHVFGVSTVGELGLGAATAYLVSFTILMAS---VYALTRDDLK 303

Query: 280 RLLAYHTVSQMGYILLG---LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA---RKRK 333
             LAY TVSQ+ YI+LG   LS   + G  ++  AHA  K  LF   G+I  A   R   
Sbjct: 304 ARLAYSTVSQLSYIVLGAVLLSPLAMVGGIIHIAAHAFSKITLFFCAGSIYCASGKRNIS 363

Query: 334 DLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYLATTE--------KAIIYAVSFG 385
           D+  +G R    + +  + SL++ G+  T G V+K YLA            A++ A S  
Sbjct: 364 DMAGIGRRLPWTMGAFFVASLSMIGIPPTAGFVSKWYLAEGSVEAGQMAFLAVLLASSVL 423

Query: 386 TAFSFSKLNYYLWKGYGNEPTNFSI-------LPSLTLGVLTVLVGI 425
            A  F  ++Y  +     + +   +       +P +   +L+VL+GI
Sbjct: 424 NAAYFLPVSYTAFFEAETKESRAPVREIPLVAIPLVATAILSVLMGI 470


>sp|Q56229|NQOE_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 14 (NADH DEHYDROGENASE 1,
           CHAIN 14) (NDH-1, CHAIN 14) >gi|7431998|pir||T11911 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO14 -
           Thermus aquaticus thermophilus
           >gi|1279874|gb|AAA97951.1| (U52917) NADH dehydrogenase
           I, subunit NQO14 [Thermus thermophilus]
           Length = 431
           
 Score = 86.2 bits (210), Expect = 7e-16
 Identities = 97/348 (27%), Positives = 149/348 (41%), Gaps = 30/348 (8%)

Query: 41  VKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLV 100
           VK   LLG+ L +    L+ G      P  +      D VS  F +   L     +L+ V
Sbjct: 25  VKRATLLGLALALASLLLTWGKPFAFGPYAV------DGVSQVFTLLALL----GALWTV 74

Query: 101 KRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSS--YALIA---SQDREAAF 155
             V +      LL++++ L    ++       + + L A+S   YAL      Q  EAA 
Sbjct: 75  GLVRSGGFEFYLLVLYAALGMHLLASTRHLLLMLVALEALSLPLYALATWRRGQGLEAAL 134

Query: 156 KYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAISLIL-----KAG 210
           KY LL   A+   +    + Y  TG L       +G   + PL   A+ L+L     KA 
Sbjct: 135 KYFLLGALAAAFFLYGAALFYGDTGSL------VLGAPGEGPLYALALGLLLVGLGFKAA 188

Query: 211 IFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAILSMAFGVI 270
           + P H W PD +  + T V   ++  +VKA  +   LL        +     LS+  G +
Sbjct: 189 LAPFHFWTPDVYQGSPTPVVLFMA-TSVKAAAFAA-LLRVAAPPEAVALLVALSVVVGNL 246

Query: 271 MAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAII-DA 329
            A+ Q  AKRLLAY +++  GY+ L L TGN      Y L + +  G  F  +  I  D 
Sbjct: 247 AALAQKEAKRLLAYSSIAHAGYMALALYTGNAQALGFYLLTYVLATGLAFAVLSQISPDR 306

Query: 330 RKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKA 377
              + L+ L  ++ LL ++  +  L++ GL   + G    YLA  E A
Sbjct: 307 VPLEALRGLYRKDPLLGLAFLVAMLSLLGLP-PLAGFWGKYLAFAEAA 353


>gi|11465633 NADH dehydrogenase subunit 2 [Porphyra purpurea]
           >gi|7432119|pir||T11228 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 2 - red alga (Porphyra purpurea)
           mitochondrion >gi|4106940|gb|AAD03107.1| (AF114794) NADH
           dehydrogenase subunit 2 [Porphyra purpurea]
           Length = 495
           
 Score = 86.2 bits (210), Expect = 7e-16
 Identities = 93/397 (23%), Positives = 168/397 (41%), Gaps = 66/397 (16%)

Query: 64  VGGYPREIGIEVGLDWVS-----------STFLIAEFLVFGASSLYLV------------ 100
           +GG+  +I + +GL W++           +  L  +FL FG  +  LV            
Sbjct: 47  IGGFATQITV-IGL-WLAFSSNVPHIVSWNALLCHDFLSFGLKNTLLVTALFWILIVFSY 104

Query: 101 ---KRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DRE 152
              ++V  ++   + +L    ++    S D+   Y+ +E  +++ Y L + +       E
Sbjct: 105 NKAEKVNFYEYWIIAMLAIVAMLLISSSFDFLVLYLAIEFQSIAFYILASFKRTSEFSTE 164

Query: 153 AAFKYLLLSMTASYVLILALGMIYFQTGYLNVE---------LASEVGLRDDTPLRLAAI 203
           A  KY +L   +S +L+L + ++Y  TG  N            A++  + + T L +  I
Sbjct: 165 AGLKYFVLGAFSSALLLLGISLLYGTTGLTNFGDLSKFFLGISATKASIVNTTILSIVLI 224

Query: 204 --SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGL---ILLSNLGDLSFLK 258
             SL+ K    P H+W PD +  A T V+S   GI  K  + G+   I      +++ + 
Sbjct: 225 EVSLLFKVSAAPFHMWSPDVYEGAPTNVTSFF-GILPKLALVGIMFRIFFLCCEEIAQML 283

Query: 259 PF-----AILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLST---GNVYGATLYSL 310
            F     A+ SM  G   A+ Q   KR +AY T+S +G+I+ G ST      +GA  Y L
Sbjct: 284 NFTLVVCALSSMVVGTFGALEQVKWKRFIAYSTISHVGFIIAGFSTTEFAGAFGAIFYIL 343

Query: 311 AHAMFKGGLF--------LGVGAIIDARKRKDLKYLGSRNILLIVSIAILSLAISGLGIT 362
            + +    +F        +       +R  KD+  L   N +L + +  +  +++G+   
Sbjct: 344 IYTLTSLAIFSIVLSLRSISYPTAYQSRYLKDIAGLVKLNPMLSICLVGILFSMAGIPPF 403

Query: 363 IGGVAKSY--LATTEKAIIYAVSFGTAFSFSKLNYYL 397
            G  AK++  LA  +K +          S     YY+
Sbjct: 404 PGFFAKAFVLLALLQKKLSGLAIVAIILSCISCFYYI 440


>gb|AAF03717.1| (AF182323) NADH dehydrogenase subunit 4 [Drosophila albomicans]
           Length = 446
           
 Score = 86.2 bits (210), Expect = 7e-16
 Identities = 84/331 (25%), Positives = 149/331 (44%), Gaps = 26/331 (7%)

Query: 33  FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
           F  P+ +  K  +++ V +    F          Y  EI   +G D +S   ++    + 
Sbjct: 10  FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69

Query: 93  GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
               ++   V +  N+K L L+  +L+   L+  F S   F FY+F E S + +  LI  
Sbjct: 70  ALMLTASESVNKYNNYKNLFLVNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129

Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
                +  +A    L  ++  S  +++ +  +  + G +N  L +      D        
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLMGIFYLMHKMGTMNFYLMNNFMFNYDLLYFCMMC 189

Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
           + ++K  +F +H+WLP AH  A    S IL+GI +K   YG++ + ++  L  +K   I 
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249

Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
             +S+  GV+++ +   Q + K L+AY +V+ MG  L GL T + +G    YSL  AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309

Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
              GLF               + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332


>gb|AAF03725.1| (AF182327) NADH dehydrogenase subunit 4 [Drosophila sulfurigaster
           bilimbata]
           Length = 446
           
 Score = 86.2 bits (210), Expect = 7e-16
 Identities = 84/331 (25%), Positives = 149/331 (44%), Gaps = 26/331 (7%)

Query: 33  FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
           F  P+ +  K  +++ V +    F          Y  EI   +G D +S   ++    + 
Sbjct: 10  FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69

Query: 93  GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
               ++   V +  N+K L L+  +L+   L+  F S   F FY+F E S + +  LI  
Sbjct: 70  ALMLTASESVNKYNNYKNLFLVNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129

Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
                +  +A    L  ++  S  +++ +  +  + G +N  L +      D        
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMNNFMFNYDLLYFCMMC 189

Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
           + ++K  +F +H+WLP AH  A    S IL+GI +K   YG++ + ++  L  +K   I 
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQLLNMKYSFIW 249

Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
             +S+  GV+++ +   Q + K L+AY +V+ MG  L GL T + +G    YSL  AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309

Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
              GLF               + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332


>gb|AAF77378.1| (AF200839) NADH dehydrogenase subunit 4 [Drosophila simulans]
           >gi|8573549|gb|AAF77389.1| (AF200840) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573564|gb|AAF77403.1| (AF200841) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573578|gb|AAF77416.1| (AF200842) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573592|gb|AAF77429.1| (AF200843) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573606|gb|AAF77442.1| (AF200844) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           >gi|8573620|gb|AAF77455.1| (AF200845) NADH dehydrogenase
           subunit 4 [Drosophila simulans]
           Length = 446
           
 Score = 86.2 bits (210), Expect = 7e-16
 Identities = 80/297 (26%), Positives = 137/297 (45%), Gaps = 26/297 (8%)

Query: 67  YPREIGIEVGLDWVSSTFLIAEFLVFGASSLYL--VKRVTNWKELSLL--LLMHSGLIGA 122
           Y  EI   +G D +S   ++    +     L    + +  N+K L LL  +++   LI  
Sbjct: 44  YWSEISYFLGCDMLSYGLILLSLWICSLMLLASESINKYNNYKNLFLLNIVILLLLLILT 103

Query: 123 FISKDYFNFYVFMELSAVSSYALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYF 177
           F S   F FY+F E S + +  LI       +R  A  YLL  ++  S  +++ +  +  
Sbjct: 104 FSSMSLFMFYLFFESSLIPTLFLILGWGYQPERLQAGVYLLFYTLLVSLPMLIGIFYVMN 163

Query: 178 QTGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIA 237
           + G +N  L +      D        + ++K  +F +H+WLP AH  A    S IL+GI 
Sbjct: 164 KIGSMNFYLMNNFMFNYDLLYFCLLCAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIM 223

Query: 238 VKAPIYGL---ILLSNLGDLSFLKPFAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMG 291
           +K   YG+   I    L +L +   +  +S+  GV+++++   Q + K L+AY +V+ MG
Sbjct: 224 LKLGGYGMLRVIAFLQLMNLKYSFVWISISLVGGVLVSLVCLRQTDLKALIAYSSVAHMG 283

Query: 292 YILLGLSTGNVYGAT---LYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
            +L GL T   +G +      +AH +   GLF               + LGSR++L+
Sbjct: 284 IVLSGLLTMTYWGLSGSYTLMIAHGLCSSGLF--------CLANVSYERLGSRSMLI 332


>gi|11465911 NADH dehydrogenase subunit 4 [Chlamydomonas eugametos]
           >gi|7432352|pir||T11039 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 4 - Chlamydomonas eugametos
           mitochondrion >gi|2865257|gb|AAC39340.1| (AF008237) NADH
           dehydrogenase subunit 4 [Chlamydomonas eugametos]
           Length = 498
           
 Score = 85.8 bits (209), Expect = 1e-15
 Identities = 91/368 (24%), Positives = 153/368 (40%), Gaps = 51/368 (13%)

Query: 39  YEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEF---LVFGAS 95
           Y +   Y L V + +LL+ L    +       + + V ++ +  +F +      L    S
Sbjct: 35  YSITKTYCLFVTMVVLLWTLYLWSIYDAIGHSLQMVVIIERLHISFGVDSMSLSLTLLTS 94

Query: 96  SLY--LVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ---D 150
           +L+   +  +  +K     LL+   + GA    D   FY+  E S +  + LI      +
Sbjct: 95  ALFPICIMVMRTFKGYITFLLLEIVIYGALNVLDLLGFYILFEASLILLFLLIGRSVYGN 154

Query: 151 REAAFKYLLLSMTASYVLILALGMIYFQTG-----YLNVELASE-VGLRDDTPLRLAAIS 204
            EAA+K +L +M  S +L+  + ++Y Q G     YL     S+           L+   
Sbjct: 155 IEAAYKIVLYTMGGSLILLPIIFVLYAQGGSTSLIYLLCNFGSQHADAYQSAYYLLSERQ 214

Query: 205 LILKAGIF----------PLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDL 254
           +IL  G+F          P+H+WLP+AH  A T  S +L+G+ +K        L  LG +
Sbjct: 215 MILGWGLFIVFAVKIPLMPVHLWLPEAHVAAPTAGSVLLAGVLLK--------LGGLGFI 266

Query: 255 SFLKP---------------FAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILL---G 296
            F+ P                 + S  +  +  I Q + K+++AY ++  M  I L    
Sbjct: 267 RFMIPILPSFTASIFPLVCCMCLASFLYSTLSTIRQIDLKKIVAYSSIGHMAMITLTIFT 326

Query: 297 LSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYL-GSRNILLIVSIAILSLA 355
           +S  + Y AT   +AH +    LFL VG + D    K + Y  G    L I SI  L   
Sbjct: 327 MSEYSAYNATFMMIAHGLVSPCLFLLVGLLYDRFHTKLIFYFTGLAAHLPIFSIMFLLCT 386

Query: 356 ISGLGITI 363
           ++ L   +
Sbjct: 387 LANLSFPL 394


>gb|AAF77260.1| (AF200830) NADH dehydrogenase subunit 4 [Drosophila mauritiana]
           Length = 446
           
 Score = 85.8 bits (209), Expect = 1e-15
 Identities = 80/297 (26%), Positives = 137/297 (45%), Gaps = 26/297 (8%)

Query: 67  YPREIGIEVGLDWVSSTFLIAEFLVFGASSLYL--VKRVTNWKELSLL--LLMHSGLIGA 122
           Y  EI   +G D +S   ++    +     L    + +  N+K L LL  +++   LI  
Sbjct: 44  YWSEISYFLGCDMLSYGLILLSLWICSLMLLASESINKYNNYKNLFLLNIVILLLLLILT 103

Query: 123 FISKDYFNFYVFMELSAVSSYALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYF 177
           F S   F FY+F E S + +  LI       +R  A  YLL  ++  S  +++ +  +  
Sbjct: 104 FSSMSLFMFYLFFESSLIPTLFLILGWGYQPERLQAGVYLLFYTLLVSLPMLIGIFYVMN 163

Query: 178 QTGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIA 237
           + G +N  L +      D        + ++K  +F +H+WLP AH  A    S IL+GI 
Sbjct: 164 KIGSMNFYLMNNFMFNYDLLYFCLLCAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIM 223

Query: 238 VKAPIYGL---ILLSNLGDLSFLKPFAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMG 291
           +K   YG+   I    L +L +   +  +S+  GV+++++   Q + K L+AY +V+ MG
Sbjct: 224 LKLGGYGMLRVIAFLQLMNLKYSFVWISISLVGGVLVSLVCLRQTDLKALIAYSSVAHMG 283

Query: 292 YILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
            +L GL T   +   G+    +AH +   GLF               + LGSR++L+
Sbjct: 284 IVLSGLLTMTYWGLCGSYTLMIAHGLCSSGLF--------CLANVSYERLGSRSMLI 332


>emb|CAB59322.1| (AJ236300) NADH dehydrogenase subunit F [Morinda citrifolia]
           Length = 738
           
 Score = 85.4 bits (208), Expect = 1e-15
 Identities = 85/328 (25%), Positives = 145/328 (43%), Gaps = 46/328 (14%)

Query: 117 SGLIGAFISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVLILA 171
           + ++G   S +    Y+F EL  V SY LI           A  K  + +    + L+L 
Sbjct: 133 TSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLG 192

Query: 172 LGMIYFQTGYLNV----ELASEVGLRDDTPLRLAAISLIL-------KAGIFPLHVWLPD 220
           +   ++ TG        E+ + + L ++       +  +L       K+  FPLHVWLPD
Sbjct: 193 ILGFFWITGSFEFRDLFEIVNNLILNNEVNCLFVTLCAVLLFAGAVAKSAQFPLHVWLPD 252

Query: 221 AHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPF--------AILSMAFGVIMA 272
           A     T +S+++    + A   G+ L++ L  L  + P+         I+++  G  +A
Sbjct: 253 A-MEGPTPISALIHAATMVA--XGIFLVARLLPLFIVIPYIMNCISLVGIITVLLGATLA 309

Query: 273 ILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDA--- 329
           + Q + KR LAY T+SQ+GY++L L  G+   A  + + HA  K  L  G G+II +   
Sbjct: 310 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLXXGSGSIIHSMET 369

Query: 330 ------RKRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGG--------VAKSYLATT 374
                  K +++  +G  R  + I  I  L   +S  GI            +  S+L +T
Sbjct: 370 VVGYSPHKSQNMALMGGLRKHVPITKITFLVGTLSICGIPPXXCFWSKDEILTDSWLYST 429

Query: 375 EKAIIYAVSFG-TAFSFSKLNYYLWKGY 401
             AII   + G TAF   ++    ++G+
Sbjct: 430 IFAIIAWFTAGLTAFYMFRIYLLTFEGH 457


>gb|AAF03739.1| (AF182334) NADH dehydrogenase subunit 4 [Drosophila pallidifrons]
           Length = 446
           
 Score = 85.4 bits (208), Expect = 1e-15
 Identities = 86/331 (25%), Positives = 149/331 (44%), Gaps = 26/331 (7%)

Query: 33  FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
           F  P+ +  K  +++ V +    F          Y  EI   +G D +S   ++    + 
Sbjct: 10  FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69

Query: 93  GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
               ++   V +  N+K L LL  +L+   L+  F S   F FY+F E S + +  LI  
Sbjct: 70  ALMLTASESVNKYNNYKNLFLLNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129

Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
                +  +A    L  ++  S  +++ +  +  + G +N  L        D        
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMYNFMFNYDLLYFCMMC 189

Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI-LLSNLGDLSFLKPFAI 262
           + ++K  +F +H+WLP AH  A    S IL+GI +K   YG++ ++S L  L+    F  
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRVISILQVLNMKYSFIW 249

Query: 263 LSMAF--GVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
           +S++   GV+++ +   Q + K L+AY +V+ MG  L GL T + +G    YSL  AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309

Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
              GLF               + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332


>gb|AAF25173.1|AF182345_1 (AF182345) NADH dehydrogenase [Puelia olyriformis]
           Length = 705
           
 Score = 85.4 bits (208), Expect = 1e-15
 Identities = 82/319 (25%), Positives = 137/319 (42%), Gaps = 39/319 (12%)

Query: 119 LIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLILALG 173
           ++G   S +    Y F EL  + SY LI           A  K  + +    + L+L + 
Sbjct: 127 MLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGIL 186

Query: 174 MIYFQTGYLNVELASEVG-----------LRDDTPLRLAAISLILKAGIFPLHVWLPDAH 222
             ++ TG L      ++            L       L  +  + K+  FPLHVWLPDA 
Sbjct: 187 GFFWITGSLEFRDLFKIANNWIPNNGINSLFTTLCAFLLFLGAVAKSAQFPLHVWLPDA- 245

Query: 223 SNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI--------LSMAFGVIMAIL 274
               T +S+++    + A   G+ LL+ L  L    PF +        +++  G  +A+ 
Sbjct: 246 MEGPTPISALIHAATMVAA--GIFLLARLLPLFISLPFIMSFISLVGTITLFLGATLALA 303

Query: 275 QFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDAR---- 330
           Q + KR LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G++I +     
Sbjct: 304 QRDIKRSLAYSTMSQLGYMMLALGIGSYQAALFHLITHAYSKALLFLGSGSVIHSMEPLV 363

Query: 331 -----KRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYAVSF 384
                K +++ ++G  R  + I     L   +S  GI       S       + +Y+  F
Sbjct: 364 GYSPDKSQNMVFMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSKDEILSNSRLYSPFF 423

Query: 385 GTAFSFSK--LNYYLWKGY 401
           G   SF+     +Y+++ Y
Sbjct: 424 GIIASFTAGLTAFYMFRVY 442


>pir||C83514 probable NADH dehydrogenase PA1054 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9946968|gb|AAG04443.1|AE004537_8 (AE004537) probable
           NADH dehydrogenase [Pseudomonas aeruginosa]
           Length = 933
           
 Score = 85.4 bits (208), Expect = 1e-15
 Identities = 123/446 (27%), Positives = 189/446 (41%), Gaps = 88/446 (19%)

Query: 70  EIGIEVGLDWVSSTFLIAEFLVFGASSL-------YLVKRVTNWKELSLLLLMHSGLIGA 122
           EIGI + L      FL A  L+ G   L       YL ++    +  + LLL    ++G 
Sbjct: 65  EIGINLSLRLDGLGFLFA-LLILGIGLLVILYARYYLSEQEPMGRFFAFLLLFMGSMLGV 123

Query: 123 FISKDYFNFYVFMELSAVSSYALIA-----SQDREAAFKYLLLSMTASYVL---ILALGM 174
            ++++     +F EL+++SS+ LI      S  R+ A   L ++      L   +L LG 
Sbjct: 124 VLAENLLLMMLFWELTSLSSFLLIGFWGSRSDARKGARMALTVTGGGGLALLAGVLLLGH 183

Query: 175 IYFQTGYLNVELASEVGLRDDTPLRLAAISLIL----KAGIFPLHVWLPDAHSNAKTYVS 230
           I        V  A E+ +R      L  I ++L    K+  FP H WLP A + A T VS
Sbjct: 184 IAGSFELTEVLAAGEL-IRAHALYPLVLILILLGVFTKSAQFPFHFWLPHAMA-APTPVS 241

Query: 231 SIL-SGIAVKAPIYGLILLSNLGD--------LSFLKPFAILSMAFGVIMAILQFNAKRL 281
           + L S   VKA   G+ LL+ L             +    ++++  G  MA+ Q + K L
Sbjct: 242 AYLHSATMVKA---GVFLLARLYPALAGTEWFFYLVSLSGLVTLLLGAGMALFQHDLKGL 298

Query: 282 LAYHTVSQMGYI--LLGLST--GNVYGATLYSLAHAMFKGGLFLGVGAIIDARKRKDL-- 335
           LAY T+S +G I  L GL +   NV  A  + + HA FK  LF+  G I      +D+  
Sbjct: 299 LAYSTISHLGLITLLFGLDSPLSNV-AAVFHIINHATFKASLFMAAGIIDHETGSRDMRL 357

Query: 336 -----KYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL------------------A 372
                KYL    +L IV+    SLA++G+ +  G ++K                     A
Sbjct: 358 INGMWKYLPHTAVLAIVA----SLAMAGVPLLNGFLSKEMFFGETLSQNLLGSFNWLVPA 413

Query: 373 TTEKAIIYAVSFGTAF----SFSKLNYYLWKGYGNEPTNFSILPSLTLGVLTVLVGI--- 425
               A +++V++   F     F+     L K   +EP  +  +P   L  L +LVG+   
Sbjct: 414 VATLAGVFSVAYSLRFIHDVFFNGEPARLPKFPPHEPPRYMKVPVEILVFLCLLVGMLPA 473

Query: 426 -------------ELGGKLSKYDLLI 438
                         LGG+L +Y L I
Sbjct: 474 YTVAPLLAAAASASLGGQLPEYSLAI 499


>gb|AAG19147.1| (AE005012) NADH dehydrogenase/oxidoreductase; NdhG3 [Halobacterium
           sp. NRC-1]
           Length = 403
           
 Score = 85.4 bits (208), Expect = 1e-15
 Identities = 91/362 (25%), Positives = 159/362 (43%), Gaps = 48/362 (13%)

Query: 110 SLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIA--SQDR---EAAFKYLLLSMTA 164
           +L LL  +G+     +      ++ +EL+++ SY L++   +DR   EA  KY L+   +
Sbjct: 18  ALTLLAATGMTLMAAANSLVTVFISLELASLPSYVLVSYLKRDRGSIEAGLKYFLIGALS 77

Query: 165 SYVLILALGMIYFQTGYLNVELASEV---GLRDDTPLRLAAISLI----LKAGIFPLHVW 217
           S V++  + ++Y  TG + +   ++    G      L L  + L+     K    P H W
Sbjct: 78  SGVMLYGISLVYAATGVMGLPAIADTITAGTDFVGVLGLGIVMLVAGFAFKTASVPFHFW 137

Query: 218 LPDAHSNAKTYVSSILS------GIAVKAPIYGL-----ILLSNLGDLSFL-KPFAILSM 265
            P+A+  A   VS+ +S      G AV   ++       ++   + D S L    A+++M
Sbjct: 138 APEAYEGAPAPVSAFISSASKAAGFAVLFRVFTTAFPLDVIAGTVIDWSLLFAALAVVTM 197

Query: 266 AFGVIMAILQFNAKRLLAYHTVSQMGYILLGLS---------TGNVYGAT-LYSLAHAMF 315
             G   A  Q N KR+LAY +V   GY+L+GL+            V GA+ ++ L +   
Sbjct: 198 TLGNFAAATQENVKRMLAYSSVGHAGYVLIGLAALQSGGGAQNSLVLGASMMHLLVYGFM 257

Query: 316 KGGLFLGVGAIID----ARKRKDLKYLGSRNILLIVSIAILSLAISGLGITIGGVAKSYL 371
             G FL V A+ +     R  +D   L  R  +  V++ +   +++GL +  G ++K  L
Sbjct: 258 NTGAFLFV-ALAEYWDVGRTFEDYNGLSKRAPVACVAMTVFMFSLAGLPVGAGFLSKYVL 316

Query: 372 ATTEKAIIYAVSFGTA--------FSFSKLNYYLWKGYGNEPTNFSILPS-LTLGVLTVL 422
                   +A   G A        F +S++   LW     +  + S  P+ L + VL   
Sbjct: 317 FAGAVQSGFAWLAGIAAINSALSLFYYSRVVKALWIEDPRDDLSLSGQPTGLYVAVLAAA 376

Query: 423 VG 424
           VG
Sbjct: 377 VG 378


>pir||T14242 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 -
           dermatophytic fungus (Trichophyton rubrum) mitochondrion
           >gi|3947740|emb|CAA77186.1| (Y18476) NADH dehydrogenase
           subunit 2 [Trichophyton rubrum]
           Length = 563
           
 Score = 85.0 bits (207), Expect = 2e-15
 Identities = 97/420 (23%), Positives = 171/420 (40%), Gaps = 78/420 (18%)

Query: 47  LGVFLPMLLFPLSRG--GVVGGYPREIGIEVGLDWVSSTFLIAEFLVFGASSLYLVKRVT 104
           L +   ML+F L+     + G YPR+        W +  +L    L+F    L+ V  + 
Sbjct: 65  LDLIFDMLIFMLTMFILNLTGFYPRKY-------WTNK-YLSINMLLFNKLKLF-VSNIF 115

Query: 105 NWK-------ELSLLLL-MHSGLIGAFISKDYFNFYVFMELSAVSSYALI-----ASQDR 151
           N K       E +L+LL +  G +    S D  + Y+ +EL +   Y L      +    
Sbjct: 116 NKKGEQYTIIEYTLILLFIVMGSLLLISSSDLISVYLSIELQSYGLYILCTLYRNSESST 175

Query: 152 EAAFKYLLLSMTASYVLILALGMIYFQTGY--------------------LNVELASEVG 191
            +   Y LL   +S  ++L +G+IY  +G                     LN  + +++ 
Sbjct: 176 SSGLTYFLLGGLSSCFILLGIGLIYANSGTTYLDSFYIITNLSNLINDNNLNYIMYNDIS 235

Query: 192 LRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSS---ILSGIAVKAPIYGLILL 248
                 L L  +  + K    P H W PD +    T V++   I+  I++   +  L+  
Sbjct: 236 TYISYYLLLITVGFLFKISAAPFHFWSPDVYDGIPTIVTTFVAIIPKISILIILLHLVHF 295

Query: 249 SNLGDLSF----LKPFAILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNV-- 302
           SN   + +    L   +ILS+  G ++ + QF  KRL AY T+S +G++LL LS  +V  
Sbjct: 296 SNNISIEYSWTELPISSILSLIIGTVLGLTQFRIKRLFAYSTISHVGFLLLALSINSVES 355

Query: 303 -YGATLYSLAHAMFKGGLF---LGVGAIIDARKRKDLKYLGSR----------------- 341
                 Y + +++    +F   +G+G  +     K++ Y                     
Sbjct: 356 IQSFIFYLIQYSISNLNVFFILIGIGYTLYFYINKNIDYNNLLDKNNSPIQLINQLKGYF 415

Query: 342 --NILLIVSIAILSLAISGLGITIGGVAKSYLATT--EKAIIYAVSFGTAFSFSKLNYYL 397
             N +L +S+AI  L+ +G+   +G  AK  + ++  +   I+    G   S     YYL
Sbjct: 416 YINPILSISLAITLLSFAGIPPLVGFFAKLMVLSSALQNGFIFLALIGILTSVVSAVYYL 475


>gb|AAF03731.1| (AF182330) NADH dehydrogenase subunit 4 [Drosophila kepulauana]
           >gi|6103697|gb|AAF03733.1| (AF182331) NADH dehydrogenase
           subunit 4 [Drosophila kohkoa]
           Length = 446
           
 Score = 85.0 bits (207), Expect = 2e-15
 Identities = 83/331 (25%), Positives = 149/331 (44%), Gaps = 26/331 (7%)

Query: 33  FRLPLTYEVKALYLLGVFLPMLLFPLSRGGVVGGYPREIGIEVGLDWVSSTFLIAEFLVF 92
           F  P+ +  K  +++ V +    F          Y  EI   +G D +S   ++    + 
Sbjct: 10  FISPICFINKMYWMVQVLIFFASFIFLLMNKFSNYWMEISYFLGCDMLSYGLILLSLWIC 69

Query: 93  GA--SSLYLVKRVTNWKELSLL--LLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIAS 148
               ++   V +  N+K L L+  +L+   L+  F S   F FY+F E S + +  LI  
Sbjct: 70  ALMLTASESVNKYNNYKNLFLVNVVLLLLLLVLTFSSMSLFMFYLFFESSLIPTLFLILG 129

Query: 149 -----QDREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVELASEVGLRDDTPLRLAAI 203
                +  +A    L  ++  S  +++ +  +  + G +N  L +      D        
Sbjct: 130 WGYQPERLQAGIYLLFYTLLVSLPMLIGIFYLMHKMGTMNFYLMNNFMFNYDLLYFCMMC 189

Query: 204 SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI- 262
           + ++K  +F +H+WLP AH  A    S IL+G+ +K   YG++ + ++  L  +K   I 
Sbjct: 190 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGMMLKLGGYGMLRVISILQLLNMKYSFIW 249

Query: 263 --LSMAFGVIMAIL---QFNAKRLLAYHTVSQMGYILLGLSTGNVYG-ATLYSL--AHAM 314
             +S+  GV+++ +   Q + K L+AY +V+ MG  L GL T + +G    YSL  AH +
Sbjct: 250 ISISLVGGVLVSFVCLRQTDLKALIAYSSVAHMGIALAGLLTMSYWGLCGSYSLMIAHGL 309

Query: 315 FKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
              GLF               + LGSR++L+
Sbjct: 310 CSSGLF--------CLANVSYERLGSRSLLI 332


>gb|AAF90048.1| (AF238062) NADH dehydrogenase subunit F [Schisandra chinensis]
           Length = 431
           
 Score = 85.0 bits (207), Expect = 2e-15
 Identities = 81/325 (24%), Positives = 142/325 (42%), Gaps = 39/325 (12%)

Query: 39  YEVKALYLLGVFLPMLLFPLSRGGVVGGY------PREIGIEVG--LDWVSSTFLI---- 86
           + V  L ++ +F   L     +GG +  Y        +  +E+G  +D ++S  LI    
Sbjct: 35  FSVSLLSIVMIFSADLSIQQIKGGFIYQYLWSWTINSDFSLELGCLIDPLTSIMLILITT 94

Query: 87  AEFLVFGASSLYLVKRVTNWKELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALI 146
              +V   S  Y+       +  + +   ++ ++G   S +    Y+F EL  + SY LI
Sbjct: 95  VGIVVLIYSDNYMSHDQGYLRFFASMSFSNTSMLGLVTSSNLIQIYIFWELVGMCSYLLI 154

Query: 147 ASQ-----DREAAFKYLLLSMTASYVLILALGMIYFQTGYLNVE--------LASEVGLR 193
                      A  K  + +    + L+L +  +Y+ TG             L    G+ 
Sbjct: 155 GFWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGSFEFRDLFKIFNNLIHNNGVN 214

Query: 194 DDTPLRLAAI---SLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLILLSN 250
                  A++     + K+  FPLH+WLPDA     T +S+++    + A   G+ L++ 
Sbjct: 215 SVFATFCASLLFLGAVAKSAQFPLHIWLPDA-MEGPTPISALIHAATMVAA--GVFLVAR 271

Query: 251 LGDLSFLKPF--------AILSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNV 302
           L  L  + P+         ++++  G   A+ Q + KR LAY T+SQ+GYI+L    G+ 
Sbjct: 272 LLPLFTVIPYIMNLISLIGVITVLLGATFALAQRDIKRSLAYSTMSQLGYIMLAPGIGSY 331

Query: 303 YGATLYSLAHAMFKGGLFLGVGAII 327
             A+ + + HA  K  LFLG G+II
Sbjct: 332 RAASFHLITHAYSKALLFLGSGSII 356


>gi|5835242 NADH dehydrogenase subunit 4 [Drosophila melanogaster]
           >gi|1166538|gb|AAC47819.1| (U37541) NADH dehydrogenase
           subunit 4 [Drosophila melanogaster]
           Length = 446
           
 Score = 84.7 bits (206), Expect = 2e-15
 Identities = 79/297 (26%), Positives = 139/297 (46%), Gaps = 26/297 (8%)

Query: 67  YPREIGIEVGLDWVSSTFLIAEFLVFGASSLY--LVKRVTNWKELSLL--LLMHSGLIGA 122
           Y  EI   +G D +S   ++    +     L   ++ +  N+K L LL  +++   LI  
Sbjct: 44  YWSEISYFLGCDMLSYGLILLSLWICSLMLLASEMINKHNNYKNLFLLNIIILLLLLILT 103

Query: 123 FISKDYFNFYVFMELSAVSSYALIAS----QDREAAFKYLLL-SMTASYVLILALGMIYF 177
           F S   F FY+F E S + +  LI       +R  A  YLL  ++  S  +++ +  +  
Sbjct: 104 FSSMSLFMFYLFFESSLIPTLFLILGWGYQPERLQAGLYLLFYTLLVSLPMLIGIFYVMN 163

Query: 178 QTGYLNVELASEVGLRDDTPLRLAAISLILKAGIFPLHVWLPDAHSNAKTYVSSILSGIA 237
           + G +N  L +      D        + ++K  +F +++WLP AH  A    S IL+GI 
Sbjct: 164 KIGSMNFYLMNNFMFNYDLLYFCLLCAFLVKMPMFLVYLWLPKAHVEAPVSGSMILAGIM 223

Query: 238 VKAPIYGLILLSNLGDLSFLK---PFAILSMAFGVIMAIL---QFNAKRLLAYHTVSQMG 291
           +K   YG++ + +   L  LK    +  +S+  GV+++++   Q + K L+AY +V+ MG
Sbjct: 224 LKLGGYGMLRVISFLQLMNLKYSFVWISISLVGGVLVSLVCLRQTDLKALIAYSSVAHMG 283

Query: 292 YILLGLSTGNVY---GATLYSLAHAMFKGGLFLGVGAIIDARKRKDLKYLGSRNILL 345
            +L GL T   +   G+    +AH +   GLF               + LGSR++L+
Sbjct: 284 IVLSGLLTMTYWGLCGSYTLMIAHGLCSSGLF--------CLANVSYERLGSRSMLI 332


>pir||T12677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - chloroplast
           Avena sativa (fragment) >gi|726164|gb|AAA64204.1|
           (U22000) NADH dehydrogenase F [Avena sativa]
           Length = 702
           
 Score = 84.3 bits (205), Expect = 3e-15
 Identities = 83/322 (25%), Positives = 138/322 (42%), Gaps = 39/322 (12%)

Query: 116 HSGLIGAFISKDYFNFYVFMELSAVSSYALIASQ-----DREAAFKYLLLSMTASYVLIL 170
           ++ ++G   S +    Y F EL  + SY LI           A  K  + +    + L+L
Sbjct: 124 NTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLL 183

Query: 171 ALGMIYFQTGYLNVELASEVG-----------LRDDTPLRLAAISLILKAGIFPLHVWLP 219
            +   ++ TG L      ++            L       L  +  + K+  FPLHVWLP
Sbjct: 184 GILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLP 243

Query: 220 DAHSNAKTYVSSILSGIAVKAPIYGLILLSNLGDLSFLKPFAI--------LSMAFGVIM 271
           DA     T +S+++    + A   G+ LL+ L  L    P  +        +++  G  +
Sbjct: 244 DA-MEGPTPISALIHAATMVAA--GIFLLARLLPLFISLPLIMSLISLVGTITLFLGATL 300

Query: 272 AILQFNAKRLLAYHTVSQMGYILLGLSTGNVYGATLYSLAHAMFKGGLFLGVGAIIDAR- 330
           A+ Q + KR LAY T+SQ+GY++L L  G+   A  + + HA  K  LFLG G+II +  
Sbjct: 301 ALAQRDIKRSLAYSTMSQLGYMMLALGIGSYQAALFHLITHAYSKALLFLGSGSIIHSME 360

Query: 331 --------KRKDLKYLGS-RNILLIVSIAILSLAISGLGITIGGVAKSYLATTEKAIIYA 381
                   K +++  +G  R  + I   A L   +S  GI       S       + +Y+
Sbjct: 361 PLVGYSPDKSQNMVLMGGLRKYIPITRSAFLWGTLSLCGIPPLACFWSKDEILSNSWLYS 420

Query: 382 VSFGTAFSFSK--LNYYLWKGY 401
             FG   SF+     +Y+++ Y
Sbjct: 421 PFFGIIASFTAGLTAFYMFRIY 442


>sp|O53307|NUOM_MYCTU NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
           M) >gi|7432363|pir||C70946 NADH dehydrogenase
           (ubiquinone) (EC 1.6.5.3) I chain nuoM - Mycobacterium
           tuberculosis (strain H37RV) >gi|3242280|emb|CAA16668.1|
           (AL021646) nuoM [Mycobacterium tuberculosis]
           Length = 553
           
 Score = 84.3 bits (205), Expect = 3e-15
 Identities = 83/325 (25%), Positives = 142/325 (43%), Gaps = 37/325 (11%)

Query: 109 LSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDR-----EAAFKYLLLSMT 163
           ++L L + S ++ + I+ D   FYVF E   +  Y LI    +      AA K+LL ++ 
Sbjct: 144 VALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGGFGQGAGRSRAAVKFLLYNLF 203

Query: 164 ASYVLILALGMIYFQTG--------YLNVELASEVGLRDDTPLRLAAISL------ILKA 209
              +++ A+  +Y  T         +  +      G     P    A+ L       +KA
Sbjct: 204 GGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGRYGADPAVFKALFLGFMFAFAIKA 263

Query: 210 GIFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI--LLSNLGDLS-FLKPF----AI 262
            ++P H WLPDA   +    + ++  +  K   +G++   L    D S + +P     AI
Sbjct: 264 PLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLRYCLQLFPDPSTYFRPLIVTLAI 323

Query: 263 LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLG---LSTGNVYGATLYSLAHAMFKGGL 319
           + + +G I+AI Q +  RL+AY ++S  G+I+ G   ++T    G+TLY L H +    +
Sbjct: 324 IGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFVMTTQGQSGSTLYMLNHGLSTAAV 383

Query: 320 FLGVGAIIDAR-KRKDLKYLGSRNILLIVS-----IAILSLAISGLGITIGGVAKSYLAT 373
           FL  G +I  R  R    Y G + +  I++      A+ ++++ GL   I       L  
Sbjct: 384 FLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSAMATVSLPGLAPFISEFL--VLLG 441

Query: 374 TEKAIIYAVSFGTAFSFSKLNYYLW 398
           T      A +FG         Y LW
Sbjct: 442 TFSRYWLAAAFGVTALVLSAVYMLW 466


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.328    0.145    0.416 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161004017
Number of Sequences: 2977
Number of extensions: 6608581
Number of successful extensions: 33719
Number of sequences better than 1.0e-10: 1746
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1743
Number of HSP's that attempted gapping in prelim test: 31185
Number of HSP's gapped (non-prelim): 2140
length of query: 479
length of database: 189,106,746
effective HSP length: 55
effective length of query: 424
effective length of database: 156,189,961
effective search space: 66224543464
effective search space used: 66224543464
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 167 (69.5 bits)