BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0810 (PAB0810) DE:Hypothetical protein
(548 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75103 hypothetical protein PAB0810 - Pyrococcus abyssi (st... 1083 0.0
pir||F71083 hypothetical protein PH0932 - Pyrococcus horikoshii ... 748 0.0
gi|11498635 conserved hypothetical protein [Archaeoglobus fulgid... 413 e-114
sp|Q58824|YE29_METJA HYPOTHETICAL PROTEIN MJ1429 >gi|2128853|pir... 362 5e-99
gi|10954499 M. jannaschii predicted coding region MJECL08 [Metha... 288 9e-77
gb|AAK42419.1| Conserved hypothetical protein [Sulfolobus solfat... 259 7e-68
sp|Q58960|YF65_METJA HYPOTHETICAL PROTEIN MJ1565 >gi|2128941|pir... 250 2e-65
pir||C69139 conserved hypothetical protein MTH307 - Methanobacte... 218 1e-55
pir||G72764 hypothetical protein APE0107 - Aeropyrum pernix (str... 217 3e-55
emb|CAC11306.1| (AL445063) conserved hypothetical protein [Therm... 207 3e-52
gi|11498665 conserved hypothetical protein [Archaeoglobus fulgid... 181 2e-44
dbj|BAA25303.1| (AB003477) hypothetical protein [Synechococcus sp.] 141 2e-32
pir||F70459 conserved hypothetical protein aq_1852 - Aquifex aeo... 92 2e-17
gi|10957064 unknown protein [Aquifex aeolicus] >gi|2984573|gb|AA... 81 3e-14
gi|10957065 putative protein [Aquifex aeolicus] >gi|7674478|sp|O... 75 2e-12
gb|AAK40792.1| Conserved hypothetical protein [Sulfolobus solfat... 72 2e-11
dbj|BAB03771.1| (AP001507) unknown [Bacillus halodurans] 70 7e-11
>pir||D75103 hypothetical protein PAB0810 - Pyrococcus abyssi (strain Orsay)
>gi|5458641|emb|CAB50129.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 548
Score = 1083 bits (2771), Expect = 0.0
Identities = 548/548 (100%), Positives = 548/548 (100%)
Query: 1 MMEDKGYIGIVRGEATFLNYEFSVNPNKDVSFGEFVITKNRDGEDVLGIVRGVRNVNWIL 60
MMEDKGYIGIVRGEATFLNYEFSVNPNKDVSFGEFVITKNRDGEDVLGIVRGVRNVNWIL
Sbjct: 1 MMEDKGYIGIVRGEATFLNYEFSVNPNKDVSFGEFVITKNRDGEDVLGIVRGVRNVNWIL 60
Query: 61 SSAKSTFNSIKLDVEEYGSSIFDNEEIVATVKVLGKIDDGELVPNRVPVKNGEFVYKASD 120
SSAKSTFNSIKLDVEEYGSSIFDNEEIVATVKVLGKIDDGELVPNRVPVKNGEFVYKASD
Sbjct: 61 SSAKSTFNSIKLDVEEYGSSIFDNEEIVATVKVLGKIDDGELVPNRVPVKNGEFVYKASD 120
Query: 121 DLLREIYKPDSPGVPIGTLLLRENVEISLDVNELISRHFAILAVTGAGKSNTVAVLIKGI 180
DLLREIYKPDSPGVPIGTLLLRENVEISLDVNELISRHFAILAVTGAGKSNTVAVLIKGI
Sbjct: 121 DLLREIYKPDSPGVPIGTLLLRENVEISLDVNELISRHFAILAVTGAGKSNTVAVLIKGI 180
Query: 181 VEDIGGTVVVLDPHGEYSRLRLPETGYKLVNVIDGEIRVDDLDPEEFADLIGILSNAHVQ 240
VEDIGGTVVVLDPHGEYSRLRLPETGYKLVNVIDGEIRVDDLDPEEFADLIGILSNAHVQ
Sbjct: 181 VEDIGGTVVVLDPHGEYSRLRLPETGYKLVNVIDGEIRVDDLDPEEFADLIGILSNAHVQ 240
Query: 241 RDFLRKAWDTVKANNPGLGGRAFLDELKSKLQAWKLGKDLTYIDPEENKPLKLKLSNQDK 300
RDFLRKAWDTVKANNPGLGGRAFLDELKSKLQAWKLGKDLTYIDPEENKPLKLKLSNQDK
Sbjct: 241 RDFLRKAWDTVKANNPGLGGRAFLDELKSKLQAWKLGKDLTYIDPEENKPLKLKLSNQDK 300
Query: 301 VTIGRLISRIERFLREYGEFVTSQDLVASIRPGMANVINLSHLDEDQMKVIVGKFLERVF 360
VTIGRLISRIERFLREYGEFVTSQDLVASIRPGMANVINLSHLDEDQMKVIVGKFLERVF
Sbjct: 301 VTIGRLISRIERFLREYGEFVTSQDLVASIRPGMANVINLSHLDEDQMKVIVGKFLERVF 360
Query: 361 KTRMDYEKARKSLSVARRNRKEEYEKILESIENNYPALAYPILIVVEEAHIFAPQGEENN 420
KTRMDYEKARKSLSVARRNRKEEYEKILESIENNYPALAYPILIVVEEAHIFAPQGEENN
Sbjct: 361 KTRMDYEKARKSLSVARRNRKEEYEKILESIENNYPALAYPILIVVEEAHIFAPQGEENN 420
Query: 421 ASRVMARIAREGRKFGVGLGVVSQRPSKLNEDILSQMNTKIILRIVNPRDQKYVLEASEQ 480
ASRVMARIAREGRKFGVGLGVVSQRPSKLNEDILSQMNTKIILRIVNPRDQKYVLEASEQ
Sbjct: 421 ASRVMARIAREGRKFGVGLGVVSQRPSKLNEDILSQMNTKIILRIVNPRDQKYVLEASEQ 480
Query: 481 LSSDLMDDIAGLGKGEAVIVGQAIKVPALVKIYDFRELNGEYGGEDIGVLDRWQEMRARL 540
LSSDLMDDIAGLGKGEAVIVGQAIKVPALVKIYDFRELNGEYGGEDIGVLDRWQEMRARL
Sbjct: 481 LSSDLMDDIAGLGKGEAVIVGQAIKVPALVKIYDFRELNGEYGGEDIGVLDRWQEMRARL 540
Query: 541 NDVPDVDF 548
NDVPDVDF
Sbjct: 541 NDVPDVDF 548
>pir||F71083 hypothetical protein PH0932 - Pyrococcus horikoshii
>gi|3257345|dbj|BAA30028.1| (AP000004) 555aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 555
Score = 748 bits (1909), Expect = 0.0
Identities = 364/554 (65%), Positives = 460/554 (82%), Gaps = 6/554 (1%)
Query: 1 MMEDKGYIGIVRGEATFLNYEFSVNPNKDVSFGEFVITKNRDGEDVLGIVRGVRNVNWIL 60
M+E+ YIGIVRGE++F+NYEFSVNP +++SFGEFV+TKNR GE VLG+VR V+NVNW+L
Sbjct: 2 MIEEGEYIGIVRGESSFINYEFSVNPEENISFGEFVVTKNRSGEWVLGVVRSVKNVNWLL 61
Query: 61 SSAKSTFNSIKLDVEEYGSSIFDNEEIVATVKVLGKIDDGELVPNRVPVKNGEFVYKASD 120
S+ KS FNS++LD+ EYG S+ +NEE+VATV++LGK+D ELVPNRVPV+NGEFVY+ASD
Sbjct: 62 SAGKSNFNSLRLDINEYGESLVENEEVVATVRILGKVDGDELVPNRVPVRNGEFVYRASD 121
Query: 121 DLLREIYKPDSPGVPIGTLLLRENVEISLDVNELISRHFAILAVTGAGKSNTVAVLIKGI 180
D+L IY+P+ P + IGTLLLR V+ISLDV+EL+SRHFA+LAVTGAGKSN VAV+I+G+
Sbjct: 122 DILERIYRPNGPSIEIGTLLLRPGVKISLDVDELVSRHFAVLAVTGAGKSNAVAVMIRGL 181
Query: 181 VEDIGGTVVVLDPHGEYSRLRLPETGYKLVNVIDGEIRVDDLDPEEFADLIGILSNAHVQ 240
VE IGGTVVVLDPHG+Y LRLP+TG LVN+I+G+IRVD+LD EE A+L+ + ++A +Q
Sbjct: 182 VEGIGGTVVVLDPHGDYVNLRLPDTGTDLVNIIEGKIRVDELDAEELANLLEVPTHASIQ 241
Query: 241 RDFLRKAWDTVKANNPGLGGRAFLDELKSKLQAWKLGKDLTYIDPEENKPLKLKLSNQDK 300
R++L +AW+TVK N G GGR L+ L+ KL+ W K + Y DP++ L ++
Sbjct: 242 REYLGRAWETVKYENQGYGGRRLLEALEVKLREWISKKSIRYWDPKKENYSSEPLRSERV 301
Query: 301 VTIGRLISRIERFLREYGEFVTSQDLVASIRPGMANVINLSHLDEDQMKVIVGKFLERVF 360
TI LI RI RFLR YG FVTS++LVA+IRPGM NVI+L LDE+QM+++VGKFLE VF
Sbjct: 302 ETIRGLIYRINRFLRNYGAFVTSENLVAAIRPGMVNVIDLGPLDENQMRLVVGKFLEEVF 361
Query: 361 KTRMDYEKARKSLSVARRNRKEEYEKILESIENNYPALAYPILIVVEEAHIFAPQGEENN 420
+ R+D+EKARKSL+ +R EY++I++ I YPALAYPILI+VEEAHIFAPQGE+++
Sbjct: 362 EKRVDFEKARKSLNRVSGSRVREYQEIMDEIREKYPALAYPILIIVEEAHIFAPQGEQSD 421
Query: 421 ASRVMARIAREGRKFGVGLGVVSQRPSKLNEDILSQMNTKIILRIVNPRDQKYVLEASEQ 480
AS++M+RIAREGRKFGVGLGVVSQRPS+LNED+LSQMNTKIILRIVNP+DQ++VL ASEQ
Sbjct: 422 ASKIMSRIAREGRKFGVGLGVVSQRPSRLNEDVLSQMNTKIILRIVNPKDQEHVLRASEQ 481
Query: 481 LSSDLMDDIAGLGKGEAVIVGQAIKVPALVKIYDFRELNGE-----YGGEDIGVLDRWQE 535
LS DLM+DIAGLGKGEAVIVGQAIKVPALVKIY+F+EL G YGGEDIG++DRW+E
Sbjct: 482 LSKDLMEDIAGLGKGEAVIVGQAIKVPALVKIYNFKELEGRAGRGVYGGEDIGIVDRWRE 541
Query: 536 MRARLNDV-PDVDF 548
M L + PD+DF
Sbjct: 542 MNEELIRIDPDIDF 555
>gi|11498635 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448468|pir||F69378 conserved hypothetical protein
AF1030 - Archaeoglobus fulgidus
>gi|2649564|gb|AAB90213.1| (AE001032) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 527
Score = 413 bits (1049), Expect = e-114
Identities = 226/531 (42%), Positives = 327/531 (61%), Gaps = 30/531 (5%)
Query: 8 IGIVRGEATFLNYEFSVNPNKDVSFGEFVITKNRDGEDVLGIVRGVRNVNWILSSAKSTF 67
+G+V G+++ ++ F+VNP+ FGE+V NRDGE+V+GIVR + N N ++ +F
Sbjct: 4 VGLVMGKSSITDFSFAVNPSAIPKFGEYVTAINRDGEEVIGIVREISNFNRMILDEGFSF 63
Query: 68 NSIKLDVEEYGSSIFDNEEIVATVKVLGKIDDGELVPNRVPVKNGEFVYKASDDLLREIY 127
+ +++ I N+ IVAT V+G + DGE+ PNR P+K V+ A DD+L ++
Sbjct: 64 EYLVKNLDFSRRLIEKNDVIVATATVIGVVKDGEVYPNRTPIKPNSEVFLADDDVLSSLF 123
Query: 128 KPDSPGVPIGTLLLRENVEISLDVNELISRHFAILAVTGAGKSNTVAVLIKGIVEDIGGT 187
K D GV +G ++ R ++ +SLD+ +L+ RHFAIL+VTG GKSNTVAVL+ IV+ + GT
Sbjct: 124 KCDR-GVELGRMIARPDISVSLDIKQLVLRHFAILSVTGGGKSNTVAVLVNDIVKKLNGT 182
Query: 188 VVVLDPHGEYSRLRLPETGYKLVNVIDGEIRVDDLDPEEFADLIGI-LSNAHVQRDFLRK 246
VV++DPHGEY + + NV+ IR + L+P EFA L+G+ A VQR L +
Sbjct: 183 VVLIDPHGEYVGYTFEDGSERGKNVVPAGIRPERLEPWEFASLVGVDREKAAVQRMHLER 242
Query: 247 AWDTVKANNPGLGGRAFLDELKSKLQAW---KLGK-DLTYIDPEENKPLKLKLSNQDKVT 302
+ TV+ + G GR F++ + + W GK + Y D K + L QD
Sbjct: 243 IFTTVR--HEGKAGREFVERVLDIAEEWINIAAGKGEAEYYDFNGIKRVAT-LDRQDLNA 299
Query: 303 IGRLISRIERFLREYGEFVTSQDLVASIRPGMANVINLSHLDEDQMKVIVGKFLERVFKT 362
+ R+ + F+R Y + ++ D++A+I+P NV+NLS DE QM+V+V L +
Sbjct: 300 LARIKEYVSSFMRRYEDLLSQNDMLANIKPSYLNVVNLSGFDEGQMRVVVAYLLRNLLVG 359
Query: 363 RMDYEKARKSLSVARRNRKEEYEKILESIENNYPALAYPILIVVEEAHIFAPQGEENNAS 422
R++Y + +K +EKI PA+ P+L++ EE HIFAP+G N+
Sbjct: 360 RINYVRGKKG-----------WEKIC-------PAIVKPLLVIFEEGHIFAPKGVNNDVV 401
Query: 423 RVMARIAREGRKFGVGLGVVSQRPSKLNEDILSQMNTKIILRIVNPRDQKYVLEASEQLS 482
M RIAREGRKFG+GLG+VSQRP +LN+D+LSQ NTKIILRI P DQ+YV ASEQ+S
Sbjct: 402 SWMGRIAREGRKFGIGLGIVSQRPKRLNDDVLSQCNTKIILRITEPNDQRYVQHASEQIS 461
Query: 483 SDLMDDIAGLGKGEAVIVGQAIKVPALVKIYDFRELNGEYGGEDIGVLDRW 533
DL+ DIA LG GEAV+VG A+K+P VKI R+ G YGG DI V++ W
Sbjct: 462 EDLLKDIASLGVGEAVVVGPAVKLPVAVKI---RKFAGNYGGRDIDVVEEW 509
>sp|Q58824|YE29_METJA HYPOTHETICAL PROTEIN MJ1429 >gi|2128853|pir||D64478 hypothetical
protein MJ1429 - Methanococcus jannaschii
>gi|1592079|gb|AAB99439.1| (U67584) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 503
Score = 362 bits (920), Expect = 5e-99
Identities = 212/532 (39%), Positives = 309/532 (57%), Gaps = 41/532 (7%)
Query: 7 YIGIVRGEATFLNYEFSVNPNKDVSFGEFVITKNRDGEDVLGIVRGVRNVNWILSSAKST 66
Y+ V G+ T ++ F + + FGE+VI KN DG DVLG+++ V
Sbjct: 2 YVMKVVGKTTTTHFTFE--SLEKIRFGEYVIAKNVDGRDVLGVIKNV------------- 46
Query: 67 FNSIKLDVEEYGSSIFDNEEIVATVKVLGKIDDGELVPNRVPVKNGEFVYKASDDLLREI 126
+ D E+ V VKV+G +D +++PNR P+ V D++L I
Sbjct: 47 --------------VADVEKFVGEVKVIGVLDGNKIIPNRTPILPNSEVRLCDDEILNNI 92
Query: 127 Y-KPDSPGVPIGTLLLRENVEISLDVNELISRHFAILAVTGAGKSNTVAVLIKGIVEDIG 185
Y PD G+ IG LL R+NV + LD N+L+SRHFAIL++TG GKSNT +VL + + +
Sbjct: 93 YLTPD--GLNIGHLLTRDNVRVYLDTNKLVSRHFAILSITGGGKSNTASVLCRELAKK-N 149
Query: 186 GTVVVLDPHGEYSRLRLPETGYKLVNVIDGEIRVDDLDPEEFADLIGILSNAHVQRDFLR 245
GTV+++DPHGEY L + K + VI+ I L P EFA+LIGI N +R ++
Sbjct: 150 GTVIMIDPHGEYISLYHEDMEGK-IKVINPIINPVLLAPSEFANLIGIGDNEIEKRVYVE 208
Query: 246 KAWDTVKANNPGLGGRAFLDELKSKLQAWK----LGKDLTYIDPEENKPLKLKLSNQDKV 301
A+ TVK P G F++++++ L W +G ++ Y +P + KL +D V
Sbjct: 209 FAYHTVKHECPDAKGIEFIEKIENLLYEWSKIASVGWEIKYYNPLRRNYDRRKLEKEDFV 268
Query: 302 TIGRLISRIERFLREYGEFVTSQDLVASIRPGMANVINLSHLDEDQMKVIVGKFLERVFK 361
+ LI I +F +Y + +D++ G N++NLS L+ QM VG + +
Sbjct: 269 ILMSLIDTISKFKLDYALNIGDRDVIEEFEIGKINIVNLSGLEIPQMVTFVGFIAKHLLL 328
Query: 362 TRMDYEKARKSLSVARRNRKEEYEKILESIENNYPALAYPILIVVEEAHIFAPQGEENNA 421
R+ Y K+ K + + + L IE++Y + P+L++VEEAHIF P E+N+A
Sbjct: 329 KRITYLKSLKDVYSINEEIRRVAQSNLNIIESHYKVVTKPVLLIVEEAHIFIPVNEQNSA 388
Query: 422 SRVMARIAREGRKFGVGLGVVSQRPSKLNEDILSQMNTKIILRIVNPRDQKYVLEASEQL 481
S + +IAREGRKFGVGLG+VSQRP +L+ D+LSQ NTKIIL+IV P DQKY+ ASE+L
Sbjct: 389 SLWLGKIAREGRKFGVGLGLVSQRPKQLHPDVLSQTNTKIILKIVEPEDQKYIQRASEEL 448
Query: 482 SSDLMDDIAGLGKGEAVIVGQAIKVPALVKIYDFRELNGEYGGEDIGVLDRW 533
DL+ D+A LG GEAVIVG AI +P++VKI F +G YGG+DI ++ W
Sbjct: 449 GEDLVKDLASLGIGEAVIVGAAISLPSIVKIDKF---DGVYGGKDINIVGEW 497
>gi|10954499 M. jannaschii predicted coding region MJECL08 [Methanococcus
jannaschii] >gi|2496214|sp|Q60270|YZ08_METJA
HYPOTHETICAL PROTEIN MJECL08 >gi|2129025|pir||H64510
hypothetical protein MJECL08 - Methanococcus jannaschii
plasmid pURB800 >gi|1522648|gb|AAC37081.1| (L77118) M.
jannaschii predicted coding region MJECL08
[Methanococcus jannaschii]
Length = 520
Score = 288 bits (730), Expect = 9e-77
Identities = 186/538 (34%), Positives = 300/538 (55%), Gaps = 52/538 (9%)
Query: 8 IGIVRGEATFLNYEFSVNPN--KDVSFGEFVITKNRDGEDVLGIVRGVRNVNWILSSAKS 65
+G V +EF + + GEFVITKN G+ +L + + +VN ++
Sbjct: 9 VGTVVASKNVNEFEFVIENQVIDKIKKGEFVITKNTHGDYLLSKITKIVSVNALIGDKSE 68
Query: 66 TFNSI-KLDVEEYGSSIFDNE-EIVATVKVLGKIDD--GELVPNRVPVKNGEFVYKASDD 121
+ + K+ Y + +N + +A+ K+LG I++ G + N P+ + VY DD
Sbjct: 69 DASELAKIRGVIYSEEMLNNSSKFLASAKILGVINNESGSIESNVYPINVPQNVYLTKDD 128
Query: 122 LLREIYKPDSPGVPIGTLLLRENVEISLDVNELISRHFAILAVTGAGKSNTVAVLIKGIV 181
LL +I+ S + +G L +R + ++ L+ EL SRHFA+LA+TGAGKSNT+AVL++ +
Sbjct: 129 LLAKIFSNGS--IEVGYLKVRSSTKVKLNAKELCSRHFAVLAMTGAGKSNTIAVLVQELF 186
Query: 182 EDIGG--TVVVLDPHGEYSRLRLPETGYKLVNVIDGEIRVDDLDPEEFADLIGILSNAHV 239
E G +V++DPHGEY ++R +++ ++ + E A L+GI N+ V
Sbjct: 187 EKDKGKMNIVIVDPHGEYVKMRN-------THILPAKLNPILVPEEHLAKLLGIGENSSV 239
Query: 240 QRDFLRKAWDTVK----ANNPGLGGRAFLDELKSKLQ------AWKLGKDLTYIDPEENK 289
Q+ FL A TVK N + G +L +++ KL A K YI+ +
Sbjct: 240 QKSFLVYAALTVKYECKENKKQISGLEYLKKIEEKLVECADKIANSEDKKRIYIEYYDGT 299
Query: 290 PLKLK-LSNQDKVTIGRLISRIERFLREYGEFVTSQDLVASIRPGMANVINLSHLDEDQM 348
+ K + D+++I R+I ++ F+ + + + + I+ NV+ L +++++
Sbjct: 300 RCRXKTVKKDDEMSINRVIEKLRWFINKNKNILGENEGMFDIKSDKINVLPLQKIEDEEA 359
Query: 349 KVIVGKFLERVFKTRMDYEKARKSLSVARRNRKEEYEKILESIENNYPALAYPILIVVEE 408
IVG+FL+RV K R+ K +++I+E AL P L+++EE
Sbjct: 360 ITIVGEFLKRVLKERI----------------KSVHDEIVE-----IKALEKPTLVIIEE 398
Query: 409 AHIFAPQGEENNASRVMARIAREGRKFGVGLGVVSQRPSKLNEDILSQMNTKIILRIVNP 468
AH+FA + ++ + + RIA+EGRKFGVGLG+VSQRP +LN +LSQMNTKIILRIV P
Sbjct: 399 AHLFAAKNLKDRSGYWINRIAKEGRKFGVGLGLVSQRPKELNPTVLSQMNTKIILRIVEP 458
Query: 469 RDQKYVLEASEQLSSDLMDDIAGLGKGEAVIVGQAIKVPALVKIYDFRELNGEYGGED 526
DQKY+LE+SE + DL+ D+ L GEA++VG ++ +PALVKI ++ +G GGED
Sbjct: 459 TDQKYILESSENVGEDLLQDLPQLSTGEAIVVGSSLPLPALVKI---KKYDGVLGGED 513
>gb|AAK42419.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 500
Score = 259 bits (654), Expect = 7e-68
Identities = 184/536 (34%), Positives = 297/536 (55%), Gaps = 64/536 (11%)
Query: 8 IGIVRGEATFLNYEFSVNPNKDVSFGEFVITKNRDGEDVLGIVRGVRNVNWILSSAKSTF 67
IG V G+AT E + + V G +V+ + D LG++ V + +L +
Sbjct: 3 IGYVIGQAT--TQEALILAERPVRLGTYVVLEY-DNVKALGLITNVTRGSPMLDDNMNDI 59
Query: 68 NSIKLDVEEYGSSIFDNEEIVATVKVLGKIDDGELVPNRVPVKNGEFVYKASDDLLREIY 127
++ ++++ +SI + A VK+L +++ L+P+ +P G +A D+ L+ IY
Sbjct: 60 EIVQR-LKQFNNSIPVYTK--AKVKMLCDMNNHFLMPD-IPPFAGTPAREAEDEELKSIY 115
Query: 128 KPDSPGVPIGTLLLRENVEISLDVNELISRHFAILAVTGAGKSNTVAVLIKGIVEDIGGT 187
D + IG+L+ +NVE+ L++N +RH AILA TG+GKSNTVAVL + I E +GG+
Sbjct: 116 SQDGQ-IRIGSLI-GKNVEVKLNINSF-ARHLAILAATGSGKSNTVAVLSQRISE-LGGS 171
Query: 188 VVVLDPHGEYSRLRLPETGYKLVNVIDGEIRVDDLDPEEFADLIGILSNAHVQRDFLRKA 247
V++ D HGEY ++ K +N I+ ++ + P EF+ L+ I NA +Q LR+A
Sbjct: 172 VLIFDYHGEYY-----DSDIKNLNRIEPKLNPLYMTPREFSTLLEIRENAIIQYRILRRA 226
Query: 248 WDTVKANNPGLGGRAFLDELKSKL-----QAWKLGKDLTYIDPEENKPLKLKLSNQDKVT 302
+ +K N G R L E + Q ++L KD +K K S +D+V
Sbjct: 227 F--IKVTN---GIREKLKEGQIPFSTLNSQFYELMKDELETQGNSDK----KSSAKDEV- 276
Query: 303 IGRLISRIERFLREYGEFV--TSQDLVASIRPGMANVINLSHLDEDQMKVIVGKFLERVF 360
+++ E F+ Y + TS D++ ++ G NV++L+ LDED M +V +L R+
Sbjct: 277 ----LNKFEEFMDRYSNVIDLTSSDIIEKVKRGKVNVVSLTQLDEDSMDAVVSHYLRRIL 332
Query: 361 KTRMDYEKARKSLSVARRNRKEEYEKILESIENNYPALAYPILIVVEEAHIFAPQGEENN 420
+R D+++++ S L +PI+ V+EEAH+F + E
Sbjct: 333 DSRKDFKRSKNS------------------------GLKFPIIAVIEEAHVFLSKNENTL 368
Query: 421 ASRVMARIAREGRKFGVGLGVVSQRPSKLNEDILSQMNTKIILRIVNPRDQKYVLEASEQ 480
+RIAREGRKFGVGL +VSQRP L+E+ILSQM KIIL+I+ P D+KY+LE+S+
Sbjct: 369 TKYWASRIAREGRKFGVGLTIVSQRPKGLDENILSQMTNKIILKIIEPTDKKYILESSDN 428
Query: 481 LSSDLMDDIAGLGKGEAVIVGQAIKVPALVKIYDFRELNGEYGGEDIGVLDRWQEM 536
LS DL + ++ L GEA+I+G+ +K+PA+VKI F G+ G D ++ W+++
Sbjct: 429 LSEDLAEQLSSLDVGEAIIIGKIVKLPAVVKIDMF---EGKLLGSDPDMIGEWKKV 481
>sp|Q58960|YF65_METJA HYPOTHETICAL PROTEIN MJ1565 >gi|2128941|pir||D64495 hypothetical
protein MJ1565 - Methanococcus jannaschii
>gi|1500459|gb|AAB99585.1| (U67597) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 513
Score = 250 bits (633), Expect = 2e-65
Identities = 180/544 (33%), Positives = 280/544 (51%), Gaps = 66/544 (12%)
Query: 2 MEDKGYIGIVRGEATFLNYEFSVNPNKDVSFGEFVITKNRDGEDVLGIVRGVRNVNWILS 61
M++ IG GE F V G++V N D ++LG+V N L
Sbjct: 1 MDNNEIIGYTIGETRIDELTFLAKEAPKV--GDYVKI-NYDDSELLGMVESTIQGNMALE 57
Query: 62 SAKSTFNSIKLDVEEYGSSIFDNEEIVATVKVLGKI----DDGELVPNRVPVKNGEFVYK 117
+ + K+ E SS + I+ +KVLG I DG L RVP K G +Y+
Sbjct: 58 DILNIEHLEKIREFEDNSSYY----ILGKIKVLGDIRDLNKDGALKLPRVPPKPGIPIYR 113
Query: 118 ASDDLLREIYKPDSPGVPIGTLLLRENVEISLDVNELISRHFAILAVTGAGKSNTVAVLI 177
A D+LL++++ + + IG L+ RE+VE+ LD N+L SRH AILA+TG GKSNTVAVL+
Sbjct: 114 ADDELLKKVF--GNGHLKIGHLVTREDVEVKLDANKLCSRHLAILAMTGMGKSNTVAVLL 171
Query: 178 KGIVEDIGGTVVVLDPHGEYSRLRLPETGYKLVNVIDGEIRVDDLDPEEFADLIGILSNA 237
+ + + TV+V D HGEY + E+ V++I+ +I + ++ ++ DL G+ + A
Sbjct: 172 REL-NKLKATVLVFDMHGEYKDIYC-ESEKLRVHIIEPKINIYRINDDDLCDLAGVDAQA 229
Query: 238 HVQRDFLRKAWDTVKANNPGLGGRA---FLDELKSKLQAWKLGKDLTYIDPEENKPLKLK 294
QR ++RKA +K +++ + KL+ +K +
Sbjct: 230 TKQRPYIRKAIKEIKEERKEHDFSTVDDYINAIIGKLEEYKSNDNY-------------- 275
Query: 295 LSNQDKVTIGRLISRIERFLREYGEFVTSQ-DLVASIRPGMANVINLSHLDEDQMKVIVG 353
+D+ +I I R+E L+ +T + + IR N+I + LDE+ + ++V
Sbjct: 276 --KKDESSIQTAIFRLEDMLQFRKNIITLHYNPINDIREHYINIIPMEELDENAVDIVVS 333
Query: 354 KFLERVF--KTRMDYEKARKSLSVARRNRKEEYEKILESIENNYPALAYPILIVVEEAHI 411
+ V + R+ +K R A PI ++ EEAH+
Sbjct: 334 YIAKAVLDDRKRIIIDKGRD--------------------------FAKPIFMIFEEAHL 367
Query: 412 FAPQGEENNASRVMARIAREGRKFGVGLGVVSQRPSKLNEDILSQMNTKIILRIVNPRDQ 471
APQ + A ++RIAREGRKFGVGL +VSQRP L+ + LSQ + II +++ P DQ
Sbjct: 368 IAPQHRKTRAKHYLSRIAREGRKFGVGLCLVSQRPKTLDAETLSQCSNLIISKLIEPTDQ 427
Query: 472 KYVLEASEQLSSDLMDDIAGLGKGEAVIVGQAIKVPALVKIYDFRELNGEYGGEDIGVLD 531
K+V ASE LS DL+ + L GEA+I+G IKVPA+VK+ F +G YGGED+ +++
Sbjct: 428 KHVQMASENLSEDLVKQLTSLNIGEAIILGPCIKVPAIVKVDKF---DGRYGGEDLNLVE 484
Query: 532 RWQE 535
W++
Sbjct: 485 LWEK 488
>pir||C69139 conserved hypothetical protein MTH307 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621360|gb|AAB84813.1| (AE000815) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 479
Score = 218 bits (549), Expect = 1e-55
Identities = 170/540 (31%), Positives = 260/540 (47%), Gaps = 74/540 (13%)
Query: 6 GYIGIVRGEATFLNYEFSVNPNKDVSFGEFVITKNRDGEDVLGIV----RGVRNVNWILS 61
G++G GE + F V GE+V+ + DG +LG+V RGV V L+
Sbjct: 2 GFVGRCYGETSPWRVSFVSREMPGV--GEYVVMEY-DGRRILGMVESLLRGVPGVTEDLN 58
Query: 62 SAKSTFNSIKLDVEEYGSSIFDNEEIVATVKVLGKIDDGELVPNRVPVKNGEFVYKASDD 121
++ I++ + + TV++LG ++ E+ RVP G V A +
Sbjct: 59 DPETVERIIRVTG--------GRQYVRGTVRILGDVETLEIP--RVPPGPGTEVRSADPE 108
Query: 122 LLREIYKPDSPGVPIGTLLLRENVEISLDVNELISRHFAILAVTGAGKSNTVAVLIKGIV 181
L I+ + + +G LL + ++D+N +++RH A+LAVTGAGKSNTVAV++ G++
Sbjct: 109 TLGRIFGRGN--LTLGRLLTAD-APFTVDINRMVTRHLAVLAVTGAGKSNTVAVIVDGLL 165
Query: 182 EDIGGTVVVLDPHGEYSRLRLPETGYKLVNVIDGEIRVDDLDPEEFADLIGILSNAHVQR 241
GGTV++ D H EY R TG + VN I I L E L + NA+VQ
Sbjct: 166 R-AGGTVIIFDMHSEYVNARF--TGGR-VNRIGASINPAHLSLREIKRLSNVRDNAYVQE 221
Query: 242 DFLRKAWDTVKAN-NPGLGGRA-FLDELKSKLQAWKLGKDLTYIDPEENKPLKLKLSNQD 299
+L +A V++ G A F + KL L ++ D
Sbjct: 222 RYLARAHRRVRSGMKDGSSSPAEFFRRMDEKLDEL------------------LSENSSD 263
Query: 300 KVTIGRLISRIERFLREYGEFVT--SQDLVASIRPGMANVINLSHLDEDQMKVIVGKFLE 357
+ +I + +++E Y E + S+ ++ +R NVI+L +DE VIV L+
Sbjct: 264 RRSIIDVQNKLEHMRESYEEIIDLESEGIIERLRLNHVNVIDLGSVDETGSDVIVSHVLQ 323
Query: 358 RVFKTRMDYEKARKSLSVARRNRKEEYEKILESIENNYPALAYPILIVVEEAHIFAPQGE 417
V ++R +Y + L P+ +V+EEAHI AP
Sbjct: 324 EVLQSRKEYLRHGTGLET-------------------------PVFMVLEEAHILAPSDR 358
Query: 418 ENNASRVMARIAREGRKFGVGLGVVSQRPSKLNEDILSQMNTKIILRIVNPRDQKYVLEA 477
+ + R+AREGRKFGVGL +VSQ P L+ + LSQ N I++R++ P DQ +V A
Sbjct: 359 PTESRYWIGRVAREGRKFGVGLCLVSQSPKSLDHEALSQANNMIVMRLIEPNDQLHVQRA 418
Query: 478 SEQLSSDLMDDIAGLGKGEAVIVGQAIKVPALVKIYDFRELNGEYGGEDIGVLDRWQEMR 537
SE LS DL+ + L GEAV+VG +PA+V+I +F G+ G D+ V W MR
Sbjct: 419 SEALSDDLLSHLPSLNIGEAVVVGLMAPLPAIVRIEEF---EGKLSGGDLDVAGIWSGMR 475
>pir||G72764 hypothetical protein APE0107 - Aeropyrum pernix (strain K1)
>gi|5103496|dbj|BAA79017.1| (AP000058) 546aa long
hypothetical protein [Aeropyrum pernix]
Length = 546
Score = 217 bits (547), Expect = 3e-55
Identities = 171/560 (30%), Positives = 271/560 (47%), Gaps = 58/560 (10%)
Query: 8 IGIVRGEATFLNYEFSVNPNKDVSFGEFVI----TKNRDGEDVLGIVRGVRNVNWILSSA 63
IG++ GE++ Y +S + S G+ ++ +G VLGIV +R+ +L
Sbjct: 13 IGVIIGESS---YSYSTILLERDSLGKVIVGSHVVSTLNGRCVLGIVESIRSGLPLLGDE 69
Query: 64 KSTFNSIKLDVEEYGSSIFDNEEI-VATVKVLGKIDD----GELVPNRVPVKNGEFVYKA 118
+S+K +E +S+ ++ VA V+ + ++ GE ++P + G V A
Sbjct: 70 VRDLDSVKRMLESDVASVVESTRYHVARVRWVSYLETLLERGEQSAPKIPPQPGSTVRLA 129
Query: 119 SDDLLREIYKPDSPG-VPIGTLLLRENVEISLDVNELISRHFAILAVTGAGKSNTVAVLI 177
++L ++ P+ V IG+LL VE +DVN+L +RH AILAVTG GKSNTV V+
Sbjct: 130 RSEVLGRVFSPEGDSWVRIGSLL-GSGVEYRIDVNKL-TRHLAILAVTGGGKSNTVCVIT 187
Query: 178 KGIVEDIGGTVVVLDPHGEYSRLRLPETGYKLVNVIDGEIRVDDLDPEEFADLIGILSNA 237
+ +V +G T V+ D HGEY L L +L+ + L E + G A
Sbjct: 188 RRLVGQLGVTTVIFDRHGEYGTLGLGAGEARLLR--PARVNPASLSYWELLYMAGFEPQA 245
Query: 238 HVQRDFLRKAWDTV--KANNPGLGGRAFLDELKSKLQAWKLGKDLTYIDPEE-------- 287
Q+ LR W + + +G + + L+ + DP
Sbjct: 246 TAQKRVLRWLWGELARRYRQGKIGAADLIPKAVEVLEKASRSSKSSKQDPGSLARAFSEV 305
Query: 288 --NKPLKLKLSNQDKVTIGRLISRIERFLREYGEFVTSQ---DLVASIRPGMANVINLSH 342
++P QD++ ++ ++ YG + DL I PG A +++LS
Sbjct: 306 LGDEPSNAPAVRQDQIL--GVLDKLNDLQDLYGSALDPNIPIDLTRIIEPGKATIMDLSM 363
Query: 343 LDEDQMKVIVGKFLERVFKTRMDYEKARKSLSVARRNRKEEYEKILESIENNYPALAYPI 402
++++ + +L R+ + R+ N + E LE YP P+
Sbjct: 364 MEDNVADAVASHYLRRLLQARV--------------NSRGEGLSGLEV----YPV---PV 402
Query: 403 LIVVEEAHIFAPQGEENNASRVMARIAREGRKFGVGLGVVSQRPSKLNEDILSQMNTKII 462
+ ++EEAH+ P+ E R ARIAREGRKFGVGL +VSQRP KL+ D+LSQ N KII
Sbjct: 403 ITIIEEAHVLIPRDEPTLTKRWAARIAREGRKFGVGLVIVSQRPKKLDVDVLSQTNNKII 462
Query: 463 LRIVNPRDQKYVLEASEQLSSDLMDDIAGLGKGEAVIVGQAIKVPALVKIYDFRELNGEY 522
L++V P+D YV ASE+LS DL + L GEA+I+G ++PA+VKI +
Sbjct: 463 LKMVEPQDISYVRAASEELSEDLASLLPSLNTGEALIMGSMARMPAVVKI---DKCEAPT 519
Query: 523 GGEDIGVLDRWQEMRARLND 542
GG DI +++ + +R D
Sbjct: 520 GGRDINIVEETRRWLSREED 539
>emb|CAC11306.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 514
Score = 207 bits (521), Expect = 3e-52
Identities = 165/573 (28%), Positives = 284/573 (48%), Gaps = 104/573 (18%)
Query: 2 MEDKGY-IGIVRGEATFLNYEFSVNPNKDVSFGEFVITKNRDGEDVLGIVRGVRNVNWIL 60
++ GY IG G+ ++ F VNP V E+V + + +LG V + + + +L
Sbjct: 4 VQGSGYEIGYTVGDNRSESFMFVVNPEIQVKKWEYVYILAYE-DLILGRVEDLVSRSDLL 62
Query: 61 SSAKSTFNSIKLDVEEYGSSIFDNEEIVATVKVLGKIDDGELVPNRVPVKNGEFVYKASD 120
+ + +NS++ +Y + ++ + V+++G + DG++ +R ++ G+ VY+A
Sbjct: 63 ND-RIDYNSVR----KYSENRMNDNVDLCVVRIIGSVKDGKISRSRYLIRPGQPVYRAGK 117
Query: 121 DLLREIYK-PDSPGVPIGTLLLRENVEISLDVNELISRHFAILAVTGAGKSNTVAVLIKG 179
D+L I K D + +G L + +V++ ++N L RH AI+A TGAGKS+T V+++
Sbjct: 118 DVLENILKFDDDRSLFLGHLADQPDVKVFANINGL-RRHLAIIAQTGAGKSHTAGVIMEE 176
Query: 180 IVEDIGGTVVVLDPHGEYSRL---------------RLP-ETGY---KLVNVIDGEIRVD 220
+++ G +++VLDPH +Y + R P TG KL V + IR
Sbjct: 177 LLKK-GASIIVLDPHADYVLMKNSQNQIYRDSIRVFRTPMSTGRYTDKLGKVDEFTIRFQ 235
Query: 221 DLDPEEFADLIGILSNAHVQRDFLRKAWDTVKANNPGLGGRAFLDELKSKLQAWKLGKDL 280
DL+ EE D++GI N Q + ++K + L GR +DE K ++
Sbjct: 236 DLNYEEVCDIMGIHENYVNQSNVVKKIMEE-------LHGRKDVDEFIEKSES------- 281
Query: 281 TYIDPEENKPLKLKLSNQDKVTIGRLISRIERFLREYGEFVTSQDLVASIRPGMANVINL 340
+D E ++K + R +G T D+ + P +VI+L
Sbjct: 282 --VDVEHRITARIKY--------------LRRIRNIFGSRTT--DIGEYLAPARMSVIDL 323
Query: 341 SHLDEDQMKVIVGKFLERVF--KTRMDYEKARKSLSVARRNRKEEYEKILESIENNYPAL 398
S LD+ + + +V+ KT +E
Sbjct: 324 SGLDQSLANYFAYRVISQVYDAKTAGSFE------------------------------- 352
Query: 399 AYPILIVVEEAHIFAP--QGEENNASRVM----ARIAREGRKFGVGLGVVSQRPSKLNED 452
YP+ + +EEAH FAP + AS+++ +IA EGRKFG+ L +++QRP K+++D
Sbjct: 353 -YPVFLFIEEAHNFAPPEKNRGGGASKMLYDLVKKIAAEGRKFGIFLAIITQRPGKIDQD 411
Query: 453 ILSQMNTKIILRIVNPRDQKYVLEASEQLSSDLMDDIAGLGKGEAVIVGQAIKVPALVKI 512
+LSQ N++IILRI NP DQK +LE+SE +S+ LM+D+ L GEA+I+G+ +K+P + KI
Sbjct: 412 VLSQCNSQIILRITNPVDQKAILESSENMSASLMEDLPSLDIGEAIIIGEIVKMPTIAKI 471
Query: 513 YDFRELNGEYGGEDIGVLDRWQEMRARLNDVPD 545
R+ E GG D+ + + ++ R + D
Sbjct: 472 ---RQRETEEGGVDVDITELLKKAREEAEKMRD 501
>gi|11498665 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448469|pir||D69382 conserved hypothetical protein
AF1060 - Archaeoglobus fulgidus
>gi|2649527|gb|AAB90179.1| (AE001029) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 505
Score = 181 bits (455), Expect = 2e-44
Identities = 154/528 (29%), Positives = 252/528 (47%), Gaps = 72/528 (13%)
Query: 5 KGYIGIVRGEATFLNYEFSVNPNKDVSFGEFVITKNRDGEDVLGIVRGVRNVNWILSSAK 64
KG IG + GEA+ + F + K V G+++ N DV G W+++ +
Sbjct: 2 KGAIGKIYGEASPFEFNFVIFNQKQVKRGDYIKVWN----DVDG---------WVVAYVE 48
Query: 65 STFNSIKLDVEEYGSSIFDNEEI-VATVKVLGKIDDGELVPNRVPVKNGEFVYKASDDLL 123
S + +E ++E+ + VLGK +DG L R P GE V+ A D L+
Sbjct: 49 SIVAKSNVRDKEIREIANGSKEVFIGKAVVLGKREDGRLKVPRSPFVPGESVFLAEDKLI 108
Query: 124 REIYKPDSPGVPIGTLLLRENVEISLDVNELISRHFAILAVTGAGKSNTVAVLIKGIVED 183
E+ GV +G LL V++ LD N L+ +H ILA TG+GKS T V+I+ ++E
Sbjct: 109 AEVLGLSVDGVYVG-LLGDTGVKVKLDPNSLVQKHVCILAKTGSGKSYTAGVIIEELLEK 167
Query: 184 IGGTVVVLDPHGEYSRLRLPETGYKLVNVIDGEIRVDDLDPEEFADLIGILSNAHVQRDF 243
++++DPHGEY +R P +DG+ V P+ + D I IL A F
Sbjct: 168 -NVPLLIIDPHGEYHSMRYPNES------VDGDFGV---KPKGYEDQIRIL--APPISPF 215
Query: 244 LRKAWDTVKANNPGLGGRAFLDELKSK--------LQAWKLGKDLTYIDPEENKPLKLKL 295
+A + + + L ++ K QA K KD Y + ++
Sbjct: 216 AERADELLILDGVNLSAEELIELTGLKNPTAQALLYQALKELKDEDYTIRDIMDEVESIK 275
Query: 296 SNQDKVTIGRLISRIERFLREYGEFVTSQDLVASIRPGMANVINLSHLDEDQMKVIVGKF 355
N +G L E L +GE T DL ++ G A +I+L ++ +IV +
Sbjct: 276 HNGKWTLLGALAKVEESGL--FGEKPT--DLRKLLQRGKATIIDLRGVEPTYQDLIVSRV 331
Query: 356 LERVFKTRMDYEKARKSLSVARRNRKEEYEKILESIENNYPALAYPILIVVEEAHIFAPQ 415
++F+ R +K E E P +IV+EEAH F P+
Sbjct: 332 CTKLFELR----------------KKGEVE---------------PGMIVIEEAHNFIPE 360
Query: 416 GEENNA--SRVMARIAREGRKFGVGLGVVSQRPSKLNEDILSQMNTKIILRIVNPRDQKY 473
+ A + ++ IA EGRKFG+GL V+SQRP++++++++SQ NT+IILR+ NP D
Sbjct: 361 RGFDKAVSTGILRTIASEGRKFGLGLMVISQRPARVDKNVISQCNTQIILRVTNPNDINA 420
Query: 474 VLEASEQLSSDLMDDIAGLGKGEAVIVGQAIKVPALVKIYDFRELNGE 521
+ E ++++++++I L G A+IV ++ P +V++ R +GE
Sbjct: 421 IKNGVEGITAEMVEEIKRLPPGHAMIVSPELERPVIVRVRSRRSKHGE 468
>dbj|BAA25303.1| (AB003477) hypothetical protein [Synechococcus sp.]
Length = 371
Score = 141 bits (352), Expect = 2e-32
Identities = 119/396 (30%), Positives = 194/396 (48%), Gaps = 63/396 (15%)
Query: 112 GEFVYKASDDLLREIYK----PDSPGVPIGTLLLREN--VEISLDVNELISRHFAILAVT 165
G VY A D L+++ D +G+LLLR+ V I LDV EL+S H AILA T
Sbjct: 3 GARVYLAEDQRLQQVLNRRRSDDVGAAHVGSLLLRDRDAVPIILDVKELVSTHMAILAGT 62
Query: 166 GAGKSNTVAVLIKGIVEDIG-GTVVVLDPHGEYSRLR-------LPETGY----KLVNVI 213
G+GKS T VLI+ ++ V++ DPHGEY L GY K++
Sbjct: 63 GSGKSYTAGVLIEELLRPQNRAAVLIFDPHGEYGTLDGLRGNPIFEADGYRPTIKVLTPA 122
Query: 214 DGEIRVDDLDPEEFADLIGIL-SNAHVQRDFLRKAWDTVKANNPGLGGRAFLDELKSKLQ 272
+ IR+ L+ F DL+ +L Q+ L KA ++++ + K+
Sbjct: 123 EIRIRISSLN---FYDLLTLLPQTTERQQAVLEKAVNSLRKH-------------KTLRD 166
Query: 273 AWKLGKDLTYIDPEENKPLKLKLSNQDKVTIGRLIS-RIERFLREYGEFVTSQDLVAS-- 329
W G + + +E + N+ + +S R+ER L+ F + + L+
Sbjct: 167 RWDFGHLIEAV--KEADTTEDDEGNEVMGPSAQSLSWRLER-LQSSPYFHSWEHLIPRDL 223
Query: 330 IRPGMANVINLSHLDEDQMKVIVGKFLERVFKTRMDYEKARKSLSVARRNRKEEYEKILE 389
PG A ++ ++ + ++Q +VI L + + R++ + + E
Sbjct: 224 FEPGQATILQMNEIPQEQQQVICTVILNQSYTARINTVRGGAT----------------E 267
Query: 390 SIENNYPALAYPILIVVEEAHIFAPQGEENNASRVMARIAREGRKFGVGLGVVSQRPSKL 449
E++ P YPI +VEEAH FAP E + +++ + EGRKFG G+G+++QRP K+
Sbjct: 268 GAEDHLP---YPIFALVEEAHRFAPAHEPSRCKQILRTVLSEGRKFGFGMGLITQRPGKI 324
Query: 450 NEDILSQMNTKIILRIVNPRDQ---KYVLEASEQLS 482
+ DILSQ ++ ++RIVNP DQ K+ +EA+ +S
Sbjct: 325 DSDILSQCMSQFLMRIVNPVDQESLKHGVEAAGAIS 360
>pir||F70459 conserved hypothetical protein aq_1852 - Aquifex aeolicus
>gi|2984136|gb|AAC07672.1| (AE000759) hypothetical
protein [Aquifex aeolicus]
Length = 625
Score = 91.7 bits (224), Expect = 2e-17
Identities = 111/427 (25%), Positives = 185/427 (42%), Gaps = 97/427 (22%)
Query: 109 VKNGEFVYKA---SDDLLREIYKPDSP-----GVPIGTLLLRENVEISLDVNELISRHFA 160
V++G V K S++L R ++K S +G L E V+ LD+++++ H A
Sbjct: 251 VESGSLVKKLEPESEELKRILFKNHSGYDMKYPTYLGKLYNTE-VKAYLDMDKVLGMHMA 309
Query: 161 ILAVTGAGKSNTVAVLIKGIVEDIGGTVVVLDPHGEYSRLRLPETGYK--LVNVIDGEIR 218
+L TG+GK+ V ++K E V++ D +GEY++ E G K +V + I
Sbjct: 310 VLGTTGSGKTTFVKKILKNFKE---SEVIIFDIYGEYAQ----ELGAKEVIVENVLMPIS 362
Query: 219 VDDLDPEEFADLIGILSNAHVQRDFLRKAWDTV--KANNPGLGGRAFLDELKSKLQAWKL 276
V+D+ +D+L++A T+ ++ F LK ++A +L
Sbjct: 363 VEDV------------------KDYLKEAGSTLEERSTEEKEFFSVFRRALKPDIEATEL 404
Query: 277 -GKDLTYIDPEENKPLKLKLSNQDKVTIGRLISRI---------ERFLREYGEFVTSQDL 326
K I E K L QD ++ + R + L+E +F+ S++
Sbjct: 405 KEKSFKEIYEEAVKNLHSLHLKQDAQSVYEHLERTYSRGALEQQPKVLKEVVDFLNSEER 464
Query: 327 VASIRPGMANVINLSHLDEDQMKV-IVGKFLERVFKTRMDYEKARKSLSVARRNRKEEYE 385
V V N +D + KV + G L+ +F A+++RK
Sbjct: 465 V--------KVFNFKEVDITETKVNLTGLILKEIFIR-------------AKKDRK---- 499
Query: 386 KILESIENNYPALAYPILIVVEEAHIFAPQ--------GEENNASRVMARIAREGRKFGV 437
P LIV+EEA AP+ G+EN A +IA EGRK +
Sbjct: 500 ---------------PRLIVIEEAQNVAPERGTGDVPSGKENVAFVYAKKIAMEGRKLNL 544
Query: 438 GLGVVSQRPSKLNEDILSQMNTKIILRIVNPRDQKYVLEASEQLSSDLMDDIAGLGKGEA 497
GL ++QRP+ L++ ILSQ+NT++I +++ D V E D+ + L G A
Sbjct: 545 GLIAITQRPANLSKFILSQLNTQVIFKLITKNDLDAVSPFFEYSKEDIFRLLPFLKPGTA 604
Query: 498 VIVGQAI 504
+ G A+
Sbjct: 605 FVSGLAV 611
>gi|10957064 unknown protein [Aquifex aeolicus] >gi|2984573|gb|AAC07972.1|
(AE000667) unknown protein [Aquifex aeolicus]
Length = 256
Score = 81.1 bits (197), Expect = 3e-14
Identities = 69/253 (27%), Positives = 117/253 (45%), Gaps = 59/253 (23%)
Query: 287 ENKPLKLKLSNQDKVTIGRLIS----------RIERFLRE-YGEFVTSQDLVA--SIRPG 333
+N L+L++ K T+ LI I +L+E YGE S +I G
Sbjct: 35 QNIKPSLRLTSLSKKTLVNLIESLNAGSKEIQEITTYLKETYGENSLSNQTTVFDAINSG 94
Query: 334 MAN-----VINLSHLDEDQMKV-IVGKFLERVFKTRMDYEKARKSLSVARRNRKEEYEKI 387
+ + + N ++ Q ++ I G +E +F RN+K+ ++
Sbjct: 95 LESEKRVIIFNFRNITHPQTRINIAGLIMEELFT----------------RNKKQPSKRF 138
Query: 388 LESIENNYPALAYPILIVVEEAHIFAPQ--------GEENNASRVMARIAREGRKFGVGL 439
L V+EEAH FAP+ G+EN + +IA EGRKF +GL
Sbjct: 139 L----------------VLEEAHNFAPEKGFGDVSAGKENLSLTFARKIASEGRKFNLGL 182
Query: 440 GVVSQRPSKLNEDILSQMNTKIILRIVNPRDQKYVLEASEQLSSDLMDDIAGLGKGEAVI 499
V++QRP+++++ ILSQ+NT+++ R +N D V E SD+ + + L G+ ++
Sbjct: 183 MVITQRPAQVSKYILSQLNTQVMFRTINASDIDTVSTFVEFAGSDIANILPKLPTGKGIV 242
Query: 500 VGQAIKVPALVKI 512
G + P LV++
Sbjct: 243 SGTGVPFPLLVEV 255
>gi|10957065 putative protein [Aquifex aeolicus]
>gi|7674478|sp|O66421|YZ31_AQUAE HYPOTHETICAL PROTEIN
AA31 >gi|2984574|gb|AAC07973.1| (AE000667) putative
protein [Aquifex aeolicus]
Length = 270
Score = 74.9 bits (181), Expect = 2e-12
Identities = 62/207 (29%), Positives = 102/207 (48%), Gaps = 30/207 (14%)
Query: 19 NYEFSVNPNKDVSFGEFVITKNRDGEDVLGIVRGV--RNVNWILSSAKSTFNSIKLDVEE 76
++EF + N D+ +V K ++G VLG + + ++ + + S +S+ VE+
Sbjct: 55 SFEFILVGNDDIGLHSYVEVKLQEGI-VLGKITSIFAYDMGFFANPFTSQESSVFAPVED 113
Query: 77 YGSSIFD--------------------NEEIVATVKVLGKIDDGELVPNRVPVKNGEFVY 116
+ +IF N+ +AT V+G + DG+L R P GE VY
Sbjct: 114 F-KTIFSKGKDDEWKKAAIYAYLNNNGNKLKIATADVIGILKDGKLDILRNPFHVGEPVY 172
Query: 117 KASDDLLREIYKPDSPG----VPIGT-LLLRENVEISLDVNELISRHFAILAVTGAGKSN 171
K S+ L +I K + G VP+ ++ ++++ +D NE+IS+H +L TG+GKS
Sbjct: 173 KISEKTLGKILKKNFSGRDMEVPVKVGVIENSDIDVFVDANEVISKHMLVLGTTGSGKSY 232
Query: 172 TVAVLIKGIVE-DIGGTVVVLDPHGEY 197
I ++E D V VLDPHGEY
Sbjct: 233 FTKRFISSLLESDKEVEVYVLDPHGEY 259
>gb|AAK40792.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 582
Score = 71.8 bits (173), Expect = 2e-11
Identities = 90/414 (21%), Positives = 181/414 (42%), Gaps = 43/414 (10%)
Query: 140 LLRENVEISLDVNELISRHFAILAVTGAGKSNTVAVLIKGIVEDIGGT-VVVLDPHGEYS 198
+L E + + +++ + I H I A TG+GKSN +++ + +++++ T VV+ D EY+
Sbjct: 167 ILHEQLSLDINLEKAIKYHLGIFAFTGSGKSNLASLIARKVLDNLPDTKVVIFDVSMEYA 226
Query: 199 RLRLPETGYKLVNVIDGEIRVDDLDPEEFADLIGILSNAHVQRDFLRKAWDTVKANNPGL 258
L L KL+ V I +D + P AD +HV D + D +K + L
Sbjct: 227 ILLLD----KLLEVPSRVISLDRVPPNP-ADASRKFLRSHVIPDDIIDIRDKIKKSAEIL 281
Query: 259 GGRAFLDELKSKLQAWKLGKDLTYIDPEE--NKPLKLKLSN-QDKVTIGRLISRIERFLR 315
+ +L + + LTY D + K ++ K + K + +S+++ F+R
Sbjct: 282 HQNGKMKQLYVPPEGFTY---LTYADLIDLVKKQIEDKYTAISQKPLLYTFLSKLDNFMR 338
Query: 316 EYGEFVTS--QDLVASIRPGMANVINLSHLDEDQMKVI----VGKFLERVFKTRMDYEKA 369
E V D + ++ + N+ +HL E+ + ++ + DY+
Sbjct: 339 ERKLTVDDIIDDSINNLLDEIENLGKDAHLKENSSLFTFISGIRAYISLGIRETEDYDIE 398
Query: 370 RKSLSVARRNRKEEYEKILE--SIENNYPALAY-----------------PILIVVEEAH 410
++ + +R ILE ++E +A +L +++EA
Sbjct: 399 NLAIEILDSSRDSPRLFILELPNLEEGRQVVATVINQIYNRRKRMYSDNPKVLFIIDEAQ 458
Query: 411 IFAP-----QGEENNASRVMARIAREGRKFGVGLGVVSQRPSKLNEDILSQMNTKIILRI 465
F P + + +S + ++ R GRK+ + + +QR + LN + L Q+++ I +
Sbjct: 459 EFIPYDTKQKDKSEASSTAIEKLLRHGRKYHLHSLISTQRLAYLNTNALQQLHSYFISTL 518
Query: 466 VNPRDQKYVLEASEQLSSDLMDDIAGLGKGEAVIVGQAIKVPALVKIYDFRELN 519
P D++ + E + +S L+D L G+ ++V +P V ++ E N
Sbjct: 519 PRPYDRQLLAE-TFGISDMLLDKTLELEPGQWLLVSFKSALPHDVPVFFAAENN 571
>dbj|BAB03771.1| (AP001507) unknown [Bacillus halodurans]
Length = 610
Score = 69.9 bits (168), Expect = 7e-11
Identities = 35/79 (44%), Positives = 52/79 (65%)
Query: 401 PILIVVEEAHIFAPQGEENNASRVMARIAREGRKFGVGLGVVSQRPSKLNEDILSQMNTK 460
P +IV +EAH FAP+G E A V+ IA+EGRK+GV L +QRP+ L+E I +Q+N+K
Sbjct: 410 PFVIVTDEAHNFAPKGYEAPAKPVLKEIAQEGRKYGVFLIFATQRPTLLDETITAQLNSK 469
Query: 461 IILRIVNPRDQKYVLEASE 479
+ R V D + + E ++
Sbjct: 470 FVFRTVRGTDIQTIKEETD 488
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.139 0.388
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203198825
Number of Sequences: 2977
Number of extensions: 8911727
Number of successful extensions: 24652
Number of sequences better than 1.0e-10: 17
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 24590
Number of HSP's gapped (non-prelim): 22
length of query: 548
length of database: 189,106,746
effective HSP length: 59
effective length of query: 489
effective length of database: 153,796,013
effective search space: 75206250357
effective search space used: 75206250357
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 167 (69.5 bits)