BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0813 (PAB0813) DE:Hypothetical protein
(443 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75103 hypothetical protein PAB0813 - Pyrococcus abyssi (st... 880 0.0
pir||B71083 hypothetical protein PH0928 - Pyrococcus horikoshii ... 575 e-163
gi|11498638 conserved hypothetical protein [Archaeoglobus fulgid... 156 4e-37
>pir||G75103 hypothetical protein PAB0813 - Pyrococcus abyssi (strain Orsay)
>gi|5458644|emb|CAB50132.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 443
Score = 880 bits (2248), Expect = 0.0
Identities = 443/443 (100%), Positives = 443/443 (100%)
Query: 1 MDRIRDTLLQNLKQTLESIDPEKILENWRPLPEAKKSKAYAIDGSRVARRLSGTIVYFLT 60
MDRIRDTLLQNLKQTLESIDPEKILENWRPLPEAKKSKAYAIDGSRVARRLSGTIVYFLT
Sbjct: 1 MDRIRDTLLQNLKQTLESIDPEKILENWRPLPEAKKSKAYAIDGSRVARRLSGTIVYFLT 60
Query: 61 ACAVGSGRGYSLSYANAMQYNYAVSEQMIRMQMETLENMIGYLSWRALNGRPKLILMDGT 120
ACAVGSGRGYSLSYANAMQYNYAVSEQMIRMQMETLENMIGYLSWRALNGRPKLILMDGT
Sbjct: 61 ACAVGSGRGYSLSYANAMQYNYAVSEQMIRMQMETLENMIGYLSWRALNGRPKLILMDGT 120
Query: 121 LTGSLIRPPIFPDDIRQISILRSLLGEHDFDNLIEEYKELLDEHYKEVEEELEKKGKSDA 180
LTGSLIRPPIFPDDIRQISILRSLLGEHDFDNLIEEYKELLDEHYKEVEEELEKKGKSDA
Sbjct: 121 LTGSLIRPPIFPDDIRQISILRSLLGEHDFDNLIEEYKELLDEHYKEVEEELEKKGKSDA 180
Query: 181 PIISDNRINYFVKRYITRKIIGHFGNKTKIRIPARLFRIEGVPVSLLEKFLEEGKTLEDL 240
PIISDNRINYFVKRYITRKIIGHFGNKTKIRIPARLFRIEGVPVSLLEKFLEEGKTLEDL
Sbjct: 181 PIISDNRINYFVKRYITRKIIGHFGNKTKIRIPARLFRIEGVPVSLLEKFLEEGKTLEDL 240
Query: 241 VKEIKEERVEVTVDKDTIEDAFHVLLAYIEYLHSLEKLLHADNLVYVAKTFYTKKLATEL 300
VKEIKEERVEVTVDKDTIEDAFHVLLAYIEYLHSLEKLLHADNLVYVAKTFYTKKLATEL
Sbjct: 241 VKEIKEERVEVTVDKDTIEDAFHVLLAYIEYLHSLEKLLHADNLVYVAKTFYTKKLATEL 300
Query: 301 GIPIVDTTLLDATLRSVLGEESEGYLEFEEPIKAPRWEFPEYLFRHFKRVKEIAERGVYV 360
GIPIVDTTLLDATLRSVLGEESEGYLEFEEPIKAPRWEFPEYLFRHFKRVKEIAERGVYV
Sbjct: 301 GIPIVDTTLLDATLRSVLGEESEGYLEFEEPIKAPRWEFPEYLFRHFKRVKEIAERGVYV 360
Query: 361 AYVRLQEGDVIYMLQSTKKIRDILPLVLSHKSGGYIEPLRIAHNTVKISQREADMALSAL 420
AYVRLQEGDVIYMLQSTKKIRDILPLVLSHKSGGYIEPLRIAHNTVKISQREADMALSAL
Sbjct: 361 AYVRLQEGDVIYMLQSTKKIRDILPLVLSHKSGGYIEPLRIAHNTVKISQREADMALSAL 420
Query: 421 INSLRAQEPMLKIFVKYGRMPLE 443
INSLRAQEPMLKIFVKYGRMPLE
Sbjct: 421 INSLRAQEPMLKIFVKYGRMPLE 443
>pir||B71083 hypothetical protein PH0928 - Pyrococcus horikoshii
>gi|3257341|dbj|BAA30024.1| (AP000004) 442aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 442
Score = 575 bits (1465), Expect = e-163
Identities = 273/443 (61%), Positives = 352/443 (78%), Gaps = 1/443 (0%)
Query: 1 MDRIRDTLLQNLKQTLESIDPEKILENWRPLPEAKKSKAYAIDGSRVARRLSGTIVYFLT 60
M++I D L+ L +TL +++ E +L NW+ LPEA++S YA+DGSR RLSGTIVYFL+
Sbjct: 1 MEKIADILIAQLNETLRNVNYEVLLSNWKALPEAERSSVYAVDGSRSVTRLSGTIVYFLS 60
Query: 61 ACAVGSGRGYSLSYANAMQYNYAVSEQMIRMQMETLENMIGYLSWRALNGRPKLILMDGT 120
A A+GSGR Y L YANAMQYN+ VS+Q++RMQMET+ENMIGYL+ + L G KLILMDGT
Sbjct: 61 AIAIGSGRSYKLFYANAMQYNHGVSDQVVRMQMETMENMIGYLAEKMLRGEKKLILMDGT 120
Query: 121 LTGSLIRPPIFPDDIRQISILRSLLGEHDFDNLIEEYKELLDEHYKEVEEELEKKGKSDA 180
LTGSLIRPP++P+DI+ I+++RSL+G +DFDNLI EY ++L+EHY+EV +L+ +G SDA
Sbjct: 121 LTGSLIRPPVYPEDIKSIAVIRSLIGINDFDNLIYEYVKMLEEHYREVRRKLKDEGTSDA 180
Query: 181 PIISDNRINYFVKRYITRKIIGHFGNKTKIRIPARLFRIEGVPVSLLEKFLEEGKTLEDL 240
P++SD I+ F ++Y+ +IIGH NK ++++P+ + + EGVP+SLLE+FLEEGK+LED
Sbjct: 181 PLLSDVIIDKFRRKYLETRIIGHIRNKVRVKVPSSIIKREGVPLSLLERFLEEGKSLEDA 240
Query: 241 VKEIKEERVEVTVDKDTIEDAFHVLLAYIEYLHSLEKLLHADNLVYVAKTFYTKKLATEL 300
++EIKEERVEV +DKD + DAFH+LL YIEYL+SL+KLL NL Y+AK+FYTKKLA L
Sbjct: 241 LREIKEERVEVVIDKDMVNDAFHILLTYIEYLYSLDKLLEVANLAYIAKSFYTKKLANML 300
Query: 301 GIPIVDTTLLDATLRSVLGEESEGYLEFEEPIKAPRWEFPEYLFRHFKRVKEIAERGVYV 360
GIPIVDT LLD LR L +E EGY FEEP++ P E PEYL HFK VK+ AERGV +
Sbjct: 301 GIPIVDTALLDIVLRRFLKKEKEGYWSFEEPVRIPH-EIPEYLINHFKNVKKFAERGVNI 359
Query: 361 AYVRLQEGDVIYMLQSTKKIRDILPLVLSHKSGGYIEPLRIAHNTVKISQREADMALSAL 420
YVR + GDVIYM+QSTKKI DILPL+L H+ GGYI PL++AH+ KIS +EA MAL AL
Sbjct: 360 GYVRFERGDVIYMVQSTKKIEDILPLILHHRVGGYIRPLQLAHDGAKISYKEARMALDAL 419
Query: 421 INSLRAQEPMLKIFVKYGRMPLE 443
IN LR ++P LK+F KYGR PLE
Sbjct: 420 INYLRNKDPELKVFTKYGRSPLE 442
>gi|11498638 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483077|pir||A69379 conserved hypothetical protein
AF1033 - Archaeoglobus fulgidus
>gi|2649561|gb|AAB90210.1| (AE001032) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 371
Score = 156 bits (391), Expect = 4e-37
Identities = 131/453 (28%), Positives = 211/453 (45%), Gaps = 93/453 (20%)
Query: 1 MDRIRDTLLQNLKQTLESID------PEKILENWRPLPEAKKSKAYAIDGSRVARRLSGT 54
M R+ D LL+ ++TLE I + W+ LPE + + +DGSR RLSG
Sbjct: 1 MWRLSDELLREFERTLEESYLSVVNIARAIKQRWKELPEPVRCRICGVDGSRGIERLSGL 60
Query: 55 IVYFLTACAVGSGRGYSLSYANAMQYNYAVSEQMIRMQMETLENMIGYLSWRALNGRPKL 114
+ Y ++A +VG + + E+ IR+ M T E +G ++ ++
Sbjct: 61 VFYIVSAASVGEDIREMHEVTTLKPHMHI--EERIRLHMHTSEYRLGSVA------DEEI 112
Query: 115 ILMDGTLTGSLIRPPIFPDDIRQISILRSLLGEHDFDNLIEEYKELLDEHYKEVEEELEK 174
+LMDGTL G++IRPP + + +L +D + +IE++ E+L+E YKE+ E++ K
Sbjct: 113 VLMDGTLRGAIIRPPAYLTK----DVYNALSKLYDLEGVIEDFIEVLEEWYKEITEDV-K 167
Query: 175 KGKSDAPIISDNRINYFVKR--YITRKIIGHFGNKTKIRIPARLFRIEGVPVSLLEKFLE 232
G + R NY + R Y R +E
Sbjct: 168 AGMA--------RKNYLLTRSEYFDR--------------------------------IE 187
Query: 233 EGKTLEDLVKEIKEERVEVTVDKDTIEDAFHVLLAYIEYLHSLEKLLHADNLVYVAKTFY 292
G D D+D + +L+ YIEYLH+L+KLL D ++VAK+FY
Sbjct: 188 AGCRKGD------------NGDRDNL----MILMEYIEYLHALDKLLQKD-AIFVAKSFY 230
Query: 293 TKKLATELGIPIVDTTLLDATLRSVLGEESEGYLEFEEPI-KAPRWEFPEYLFRHFKRVK 351
T + I D+ +LD R GEE G+++F+ + K+ W + K+ K
Sbjct: 231 TSEFTANSS--ITDSAVLDYLAREQFGEEKAGFIQFKPNLQKSLPW--------YAKKFK 280
Query: 352 EIAERGVYVAYVRLQEGDVIYMLQSTKKI-RDILPLVLSHKSGGYIEPLRIAHNTVKISQ 410
+ + +Y A+VR + IYML+STK I D + + ++++ GY+ PL AH +I +
Sbjct: 281 RLDKAEIYGAFVRFADSGSIYMLESTKPIEEDTIAKLCNYEADGYLIPLIHAHRHAEIKR 340
Query: 411 READMALSALINSLRAQEPMLKIFVKYGRMPLE 443
RE +SA+ L A +P +K GR LE
Sbjct: 341 RELKTIISAM---LSATDPKYAFLLKRGRDVLE 370
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.139 0.390
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158759228
Number of Sequences: 2977
Number of extensions: 6885237
Number of successful extensions: 27041
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27029
Number of HSP's gapped (non-prelim): 5
length of query: 443
length of database: 189,106,746
effective HSP length: 58
effective length of query: 385
effective length of database: 154,394,500
effective search space: 59441882500
effective search space used: 59441882500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)