BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0816 (PAB0816) DE:Hypothetical protein
(394 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75104 hypothetical protein PAB0816 - Pyrococcus abyssi (st... 803 0.0
pir||A71083 hypothetical protein PH0927 - Pyrococcus horikoshii ... 760 0.0
pir||H72683 hypothetical protein APE0889 - Aeropyrum pernix (str... 274 1e-72
>pir||E75104 hypothetical protein PAB0816 - Pyrococcus abyssi (strain Orsay)
>gi|5458650|emb|CAB50138.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 394
Score = 803 bits (2052), Expect = 0.0
Identities = 394/394 (100%), Positives = 394/394 (100%)
Query: 1 MLLEAPVYKEIFGAVTIHEVQKVIKMDTETEDVPVYTISNIPREKIYNLLGKMAIIVPMK 60
MLLEAPVYKEIFGAVTIHEVQKVIKMDTETEDVPVYTISNIPREKIYNLLGKMAIIVPMK
Sbjct: 1 MLLEAPVYKEIFGAVTIHEVQKVIKMDTETEDVPVYTISNIPREKIYNLLGKMAIIVPMK 60
Query: 61 NEKLHLVDGVLKAIPHKCPIIIVSNSKREGPNRYKLEVDLVRHFYNLTHSKVIMIHQKDP 120
NEKLHLVDGVLKAIPHKCPIIIVSNSKREGPNRYKLEVDLVRHFYNLTHSKVIMIHQKDP
Sbjct: 61 NEKLHLVDGVLKAIPHKCPIIIVSNSKREGPNRYKLEVDLVRHFYNLTHSKVIMIHQKDP 120
Query: 121 GLAKAFKEVGYTDILDGKGKVRSGKGEGMIIGMLLAKAIGAEYIGFVDADNYIPGSVNEY 180
GLAKAFKEVGYTDILDGKGKVRSGKGEGMIIGMLLAKAIGAEYIGFVDADNYIPGSVNEY
Sbjct: 121 GLAKAFKEVGYTDILDGKGKVRSGKGEGMIIGMLLAKAIGAEYIGFVDADNYIPGSVNEY 180
Query: 181 VKDYAAGFLMSESDYTMVRLHWRHKPKVTKGTLYFKKWGRVSEITNHYLNLLISEHTAFE 240
VKDYAAGFLMSESDYTMVRLHWRHKPKVTKGTLYFKKWGRVSEITNHYLNLLISEHTAFE
Sbjct: 181 VKDYAAGFLMSESDYTMVRLHWRHKPKVTKGTLYFKKWGRVSEITNHYLNLLISEHTAFE 240
Query: 241 TTIMVTGNAGEHAMTMKLAEIMPFSTGYSVEPYEIVYLLERFGKWENVDEFKEVFDQGIE 300
TTIMVTGNAGEHAMTMKLAEIMPFSTGYSVEPYEIVYLLERFGKWENVDEFKEVFDQGIE
Sbjct: 241 TTIMVTGNAGEHAMTMKLAEIMPFSTGYSVEPYEIVYLLERFGKWENVDEFKEVFDQGIE 300
Query: 301 IFQIETLNPHFHEDKGQEHVKEMLLLSLATIYHSKLATNSLKKKILNDLREHKILKENEE 360
IFQIETLNPHFHEDKGQEHVKEMLLLSLATIYHSKLATNSLKKKILNDLREHKILKENEE
Sbjct: 301 IFQIETLNPHFHEDKGQEHVKEMLLLSLATIYHSKLATNSLKKKILNDLREHKILKENEE 360
Query: 361 PPKPLVMRPIKEIPIKEWMEIVEDNSETLLRFEL 394
PPKPLVMRPIKEIPIKEWMEIVEDNSETLLRFEL
Sbjct: 361 PPKPLVMRPIKEIPIKEWMEIVEDNSETLLRFEL 394
>pir||A71083 hypothetical protein PH0927 - Pyrococcus horikoshii
>gi|3257340|dbj|BAA30023.1| (AP000004) 394aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 394
Score = 760 bits (1940), Expect = 0.0
Identities = 361/394 (91%), Positives = 387/394 (97%)
Query: 1 MLLEAPVYKEIFGAVTIHEVQKVIKMDTETEDVPVYTISNIPREKIYNLLGKMAIIVPMK 60
MLLEAPVYKEIFGAVTIHEVQKVIKMDTETE+VP+YTISNIPREKIY+LLGKMA+IVPMK
Sbjct: 1 MLLEAPVYKEIFGAVTIHEVQKVIKMDTETEEVPIYTISNIPREKIYDLLGKMAVIVPMK 60
Query: 61 NEKLHLVDGVLKAIPHKCPIIIVSNSKREGPNRYKLEVDLVRHFYNLTHSKVIMIHQKDP 120
NEKLHLVDGVLKAIPHKCPIIIVSNSKREGPNRYKLEVDL+RHFYNLTHSK+IMIHQKDP
Sbjct: 61 NEKLHLVDGVLKAIPHKCPIIIVSNSKREGPNRYKLEVDLIRHFYNLTHSKIIMIHQKDP 120
Query: 121 GLAKAFKEVGYTDILDGKGKVRSGKGEGMIIGMLLAKAIGAEYIGFVDADNYIPGSVNEY 180
GLAKAFKEVGYTDILD G +RSGKGEGM++G+LLAKAIGAEY+GFVDADNYIPG+VNEY
Sbjct: 121 GLAKAFKEVGYTDILDENGMIRSGKGEGMLVGLLLAKAIGAEYVGFVDADNYIPGAVNEY 180
Query: 181 VKDYAAGFLMSESDYTMVRLHWRHKPKVTKGTLYFKKWGRVSEITNHYLNLLISEHTAFE 240
VKDYAAGFLMSES+YTMVRLHWRHKPKVTKGTLYFKKWGRVSEITNHYLNLL+SEHTAFE
Sbjct: 181 VKDYAAGFLMSESEYTMVRLHWRHKPKVTKGTLYFKKWGRVSEITNHYLNLLVSEHTAFE 240
Query: 241 TTIMVTGNAGEHAMTMKLAEIMPFSTGYSVEPYEIVYLLERFGKWENVDEFKEVFDQGIE 300
TTIMVTGNAGEHAMTMKLAEI+PFSTGYS+EPYEIVY+LERFGKWENV+EFK+VFDQGIE
Sbjct: 241 TTIMVTGNAGEHAMTMKLAEILPFSTGYSIEPYEIVYILERFGKWENVEEFKDVFDQGIE 300
Query: 301 IFQIETLNPHFHEDKGQEHVKEMLLLSLATIYHSKLATNSLKKKILNDLREHKILKENEE 360
IFQIETLNPHFHEDKG+EHVKEMLLLSLATIYHSKLAT++L+K+IL DLR+H IL ENEE
Sbjct: 301 IFQIETLNPHFHEDKGKEHVKEMLLLSLATIYHSKLATDNLRKRILKDLRDHGILGENEE 360
Query: 361 PPKPLVMRPIKEIPIKEWMEIVEDNSETLLRFEL 394
PPKPLVMRPIKEIPIKEWM+IVE NSETLLRFEL
Sbjct: 361 PPKPLVMRPIKEIPIKEWMDIVEGNSETLLRFEL 394
>pir||H72683 hypothetical protein APE0889 - Aeropyrum pernix (strain K1)
>gi|5104557|dbj|BAA79872.1| (AP000060) 394aa long
hypothetical protein [Aeropyrum pernix]
Length = 394
Score = 274 bits (694), Expect = 1e-72
Identities = 144/394 (36%), Positives = 235/394 (59%), Gaps = 17/394 (4%)
Query: 1 MLLEAPVYKEIFGAVTIHEVQKVIKMDTETEDVPVYTISNIPREKIYNLLGKMAIIVPMK 60
++L P E+FGAV I++V +V+ +D + P + + R ++ + + I+VP+K
Sbjct: 7 LMLSLPAKFEVFGAVRIYDVSRVLSLDGRPKSRPTNLVY-VDRGELEDAAFRTVIVVPVK 65
Query: 61 NEKLHLVDGVLKAIPHKCPIIIVSNSKREGPNRYKLEVDLVRHFYNLTHSKVIMIHQKDP 120
+E L ++ VL++IP + P+++VS S RE +R+ EV+L R + +++Q DP
Sbjct: 66 DEDLLTLENVLRSIPTESPVVVVSASTREPVDRFSNEVELARLISRSLQRDIAIVYQFDP 125
Query: 121 GLAKAFKEVGYTDILDGKGKVRSGKGEGMIIGMLLAKAIGAEYIGFVDADNYIPGSVNEY 180
++A ++ G+VR GKGEGM++G ++A A+GA+++G+VD+DNY+PGS EY
Sbjct: 126 AWSEALSGTPLESMVGASGRVRKGKGEGMLLGFIVAAALGADFVGYVDSDNYVPGSALEY 185
Query: 181 VKDYAAGFLMSESDYTMVRLHWRHKPKVTKGTLYFKKWGRVSEITNHYLNLLISEHTAFE 240
Y + + S Y+MVR+ W +K K+ +Y +K GRVS ITN LN +S + E
Sbjct: 186 SWIYYSALSRATSSYSMVRIVWPYKGKLAASDMYLRKRGRVSTITNGVLNYTLSIYKRIE 245
Query: 241 TTIMVTGNAGEHAMTMKLAEIMPFSTGYSVEPYEIVYLLE------RFGKWENVDEFKEV 294
T I+ TGN+GE A+T+KL M + +G++VE Y++V++LE + GK ++
Sbjct: 246 TDIIKTGNSGEQALTVKLGMEMNWGSGFAVETYQLVWMLENCYLGLQAGKCPIAPDY--- 302
Query: 295 FDQGIEIFQIETLNPHFHEDKGQEHVKEMLLLSLATIYHSKLATNSLKKKILNDLREHKI 354
IE+ Q+ LNPH H ++G EH+ EM +SL TI+HS LA+ +K +IL+ L K
Sbjct: 303 ----IEVRQVSPLNPHIHAERGDEHIAEMTAVSLGTIFHSSLASEEVKSRILDQL---KS 355
Query: 355 LKENEEPPKPLVMRPIKEIPIKEWMEIVEDNSET 388
L EEPPKP RP P K + + ++S++
Sbjct: 356 LGLAEEPPKPSTYRPAGTDPKKVFASFIAESSDS 389
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149443649
Number of Sequences: 2977
Number of extensions: 6405665
Number of successful extensions: 15328
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15322
Number of HSP's gapped (non-prelim): 3
length of query: 394
length of database: 189,106,746
effective HSP length: 56
effective length of query: 338
effective length of database: 155,591,474
effective search space: 52589918212
effective search space used: 52589918212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)