BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0817 (PAB0817) DE:Hypothetical protein
(243 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75104 hypothetical protein PAB0817 - Pyrococcus abyssi (st... 492 e-138
pir||H71082 hypothetical protein PH0926 - Pyrococcus horikoshii ... 388 e-107
sp|P76329|YEDP_ECOLI HYPOTHETICAL 30.4 KD PROTEIN IN DSRB-VSR IN... 82 5e-15
>pir||F75104 hypothetical protein PAB0817 - Pyrococcus abyssi (strain Orsay)
>gi|5458651|emb|CAB50139.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 243
Score = 492 bits (1252), Expect = e-138
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MIKVIFLDIDKTLIPSYDPEPAEPVIKELKRKGFEIVFNSSKTRAEQEFYREKLDVKTPF 60
MIKVIFLDIDKTLIPSYDPEPAEPVIKELKRKGFEIVFNSSKTRAEQEFYREKLDVKTPF
Sbjct: 1 MIKVIFLDIDKTLIPSYDPEPAEPVIKELKRKGFEIVFNSSKTRAEQEFYREKLDVKTPF 60
Query: 61 ISENGSAIYIPKNYFPFEIKGRETKDYIVIELGVKVEEIRRELRKLEDAYGIKYYANSTK 120
ISENGSAIYIPKNYFPFEIKGRETKDYIVIELGVKVEEIRRELRKLEDAYGIKYYANSTK
Sbjct: 61 ISENGSAIYIPKNYFPFEIKGRETKDYIVIELGVKVEEIRRELRKLEDAYGIKYYANSTK 120
Query: 121 EEIMEFTGMPEELVPLAMEREYSETIFKWSRESWKRTLSERGFTVTMGSRFYSVHGNCDK 180
EEIMEFTGMPEELVPLAMEREYSETIFKWSRESWKRTLSERGFTVTMGSRFYSVHGNCDK
Sbjct: 121 EEIMEFTGMPEELVPLAMEREYSETIFKWSRESWKRTLSERGFTVTMGSRFYSVHGNCDK 180
Query: 181 GKAAKILLELYRRLGPVRSYAVGDGYNDFPMFDVVDRAFLIGNLTHEKAQNVSSIMEVLE 240
GKAAKILLELYRRLGPVRSYAVGDGYNDFPMFDVVDRAFLIGNLTHEKAQNVSSIMEVLE
Sbjct: 181 GKAAKILLELYRRLGPVRSYAVGDGYNDFPMFDVVDRAFLIGNLTHEKAQNVSSIMEVLE 240
Query: 241 VIE 243
VIE
Sbjct: 241 VIE 243
>pir||H71082 hypothetical protein PH0926 - Pyrococcus horikoshii
>gi|3257339|dbj|BAA30022.1| (AP000004) 243aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 243
Score = 388 bits (987), Expect = e-107
Identities = 179/243 (73%), Positives = 220/243 (89%)
Query: 1 MIKVIFLDIDKTLIPSYDPEPAEPVIKELKRKGFEIVFNSSKTRAEQEFYREKLDVKTPF 60
MI++IFLDIDKTLIP Y+P+PA+P+I+ELK GFEI+FNSSKTRAEQE+YR++L+V+TPF
Sbjct: 1 MIRLIFLDIDKTLIPGYEPDPAKPIIEELKDMGFEIIFNSSKTRAEQEYYRKELEVETPF 60
Query: 61 ISENGSAIYIPKNYFPFEIKGRETKDYIVIELGVKVEEIRRELRKLEDAYGIKYYANSTK 120
ISENGSAI+IPK YFPF++KG+E +YIVIELG++VE+IR EL+KLE+ YG+KYY NSTK
Sbjct: 61 ISENGSAIFIPKGYFPFDVKGKEVGNYIVIELGIRVEKIREELKKLENIYGLKYYGNSTK 120
Query: 121 EEIMEFTGMPEELVPLAMEREYSETIFKWSRESWKRTLSERGFTVTMGSRFYSVHGNCDK 180
EEI +FTGMP ELVPLAMEREYSETIF+WSR+ W+ L E GF VTMGSRFY+VHGN DK
Sbjct: 121 EEIEKFTGMPPELVPLAMEREYSETIFEWSRDGWEEVLVEGGFKVTMGSRFYTVHGNSDK 180
Query: 181 GKAAKILLELYRRLGPVRSYAVGDGYNDFPMFDVVDRAFLIGNLTHEKAQNVSSIMEVLE 240
GKAAKILL+ Y+RLG + SYAVGD YNDFPMF+VVD+AF++G+L H+KAQNVSSI++VLE
Sbjct: 181 GKAAKILLDFYKRLGQIESYAVGDSYNDFPMFEVVDKAFIVGSLKHKKAQNVSSIIDVLE 240
Query: 241 VIE 243
VI+
Sbjct: 241 VIK 243
>sp|P76329|YEDP_ECOLI HYPOTHETICAL 30.4 KD PROTEIN IN DSRB-VSR INTERGENIC REGION
>gi|7466255|pir||G64959 hypothetical protein b1955 -
Escherichia coli >gi|1788265|gb|AAC75021.1| (AE000287)
orf, hypothetical protein [Escherichia coli K12]
Length = 271
Score = 82.3 bits (200), Expect = 5e-15
Identities = 69/238 (28%), Positives = 116/238 (47%), Gaps = 23/238 (9%)
Query: 4 VIFLDIDKTLIPS--YDPEPAEPVIKELKRKGFEIVFNSSKTRAEQEFYREKLDVK-TPF 60
++F D+D TL+ S YD +PA P + L+ ++ SSKT AE + ++ L ++ P
Sbjct: 9 LVFSDLDGTLLDSHSYDWQPAAPWLTRLREANVPVILCSSKTSAEMLYLQKTLGLQGLPL 68
Query: 61 ISENGSAIYIPKNYFPFEIKGRETKDYIVIELGVKVEEIRRELRKLEDAYGIKY--YANS 118
I+ENG+ I + + + +E + I G+ EI L L + K+ + +
Sbjct: 69 IAENGAVIQLAEQW-------QEIDGFPRIISGISHGEISLVLNTLREKEHFKFTTFDDV 121
Query: 119 TKEEIMEFTGMPEELVPLAMEREYSETIFKWSRESWKR------TLSERGFTVTMGSRFY 172
I E+TG+ L E S T+ W R+S +R L+E G G+RF+
Sbjct: 122 DDATIAEWTGLSRSQAALTQLHEASVTLI-W-RDSDERMAQFTARLNELGLQFMQGARFW 179
Query: 173 SV-HGNCDKGKAAKILLELYRRLGPVR--SYAVGDGYNDFPMFDVVDRAFLIGNLTHE 227
V + K +AA ++ Y++L R + +GDG ND P+ +V+D A ++ L E
Sbjct: 180 HVLDASAGKDQAANWIIATYQQLSGKRPTTLGLGDGPNDAPLLEVMDYAVIVKGLNRE 237
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.394
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91741963
Number of Sequences: 2977
Number of extensions: 3898540
Number of successful extensions: 11033
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11030
Number of HSP's gapped (non-prelim): 3
length of query: 243
length of database: 189,106,746
effective HSP length: 56
effective length of query: 187
effective length of database: 155,591,474
effective search space: 29095605638
effective search space used: 29095605638
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)