BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0820 (PAB0820) DE:Hypothetical protein
         (374 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75105 hypothetical protein PAB0820 - Pyrococcus abyssi (st...   750  0.0
pir||D71080 hypothetical protein PH0908 - Pyrococcus horikoshii ...   552  e-156

>pir||C75105 hypothetical protein PAB0820 - Pyrococcus abyssi (strain Orsay)
           >gi|5458656|emb|CAB50144.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 374
           
 Score =  750 bits (1916), Expect = 0.0
 Identities = 374/374 (100%), Positives = 374/374 (100%)

Query: 1   MDKLDVKFVISLVLFILIGAYIIGVQDVLFSGNTTSPSPYVYPKEYIEEMRKQYSLLDFS 60
           MDKLDVKFVISLVLFILIGAYIIGVQDVLFSGNTTSPSPYVYPKEYIEEMRKQYSLLDFS
Sbjct: 1   MDKLDVKFVISLVLFILIGAYIIGVQDVLFSGNTTSPSPYVYPKEYIEEMRKQYSLLDFS 60

Query: 61  NLITDVSLINKTDSLFTELNSTKKCSILIRDLEKDFYSAKIYTFIPTFAYLAADKIECNA 120
           NLITDVSLINKTDSLFTELNSTKKCSILIRDLEKDFYSAKIYTFIPTFAYLAADKIECNA
Sbjct: 61  NLITDVSLINKTDSLFTELNSTKKCSILIRDLEKDFYSAKIYTFIPTFAYLAADKIECNA 120

Query: 121 SKYQGNVSLALSEVEKLLSEIREIERTKGQSPWLAMAELYLEWSQNPNMTPTQAIFTMEY 180
           SKYQGNVSLALSEVEKLLSEIREIERTKGQSPWLAMAELYLEWSQNPNMTPTQAIFTMEY
Sbjct: 121 SKYQGNVSLALSEVEKLLSEIREIERTKGQSPWLAMAELYLEWSQNPNMTPTQAIFTMEY 180

Query: 181 LIPFLREHIEGGYKEIEFDLSNITRTKREIEKLKRTLKMDKTQRINLISLASVWLNMSEN 240
           LIPFLREHIEGGYKEIEFDLSNITRTKREIEKLKRTLKMDKTQRINLISLASVWLNMSEN
Sbjct: 181 LIPFLREHIEGGYKEIEFDLSNITRTKREIEKLKRTLKMDKTQRINLISLASVWLNMSEN 240

Query: 241 AYRKGEKSLALWYYSVSLAYLNLTETEWAKAPYPYFVQGGLQKDRDMPYNITGIRKEVYE 300
           AYRKGEKSLALWYYSVSLAYLNLTETEWAKAPYPYFVQGGLQKDRDMPYNITGIRKEVYE
Sbjct: 241 AYRKGEKSLALWYYSVSLAYLNLTETEWAKAPYPYFVQGGLQKDRDMPYNITGIRKEVYE 300

Query: 301 KALTFAKKKGKGPYAELLSNYVLLDLRMLDSYTLPKLSNPNNPLIKYYPSATYEAYLRLL 360
           KALTFAKKKGKGPYAELLSNYVLLDLRMLDSYTLPKLSNPNNPLIKYYPSATYEAYLRLL
Sbjct: 301 KALTFAKKKGKGPYAELLSNYVLLDLRMLDSYTLPKLSNPNNPLIKYYPSATYEAYLRLL 360

Query: 361 GMVVAIESFASYFS 374
           GMVVAIESFASYFS
Sbjct: 361 GMVVAIESFASYFS 374


>pir||D71080 hypothetical protein PH0908 - Pyrococcus horikoshii
           >gi|3257319|dbj|BAA30002.1| (AP000004) 370aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 370
           
 Score =  552 bits (1408), Expect = e-156
 Identities = 267/374 (71%), Positives = 318/374 (84%), Gaps = 4/374 (1%)

Query: 1   MDKLDVKFVISLVLFILIGAYIIGVQDVLFSGNTTSPSPYVYPKEYIEEMRKQYSLLDFS 60
           MD+LD+KF + +V+FILIGAY IG+ +         PSPYVYPKEYIEEMRKQ+SL++FS
Sbjct: 1   MDELDIKFAVFVVIFILIGAYFIGIPES--KDKAEPPSPYVYPKEYIEEMRKQFSLVNFS 58

Query: 61  NLITDVSLINKTDSLFTELNSTKKCSILIRDLEKDFYSAKIYTFIPTFAYLAADKIECNA 120
            L TD SLI + +SLF+ELNST+KCSILI D+EKDFYS +IYTF+PTFAYL ADKIECN 
Sbjct: 59  GLTTDGSLIPQINSLFSELNSTRKCSILIGDMEKDFYSGRIYTFVPTFAYLVADKIECND 118

Query: 121 SKYQGNVSLALSEVEKLLSEIREIERTKGQSPWLAMAELYLEWSQNPNMTPTQAIFTMEY 180
            K  GNVSLALSEV+ LL+EIREIERT+GQSPWL +AELYL WSQNPNMT  +A  TMEY
Sbjct: 119 IK--GNVSLALSEVKGLLNEIREIERTRGQSPWLTVAELYLGWSQNPNMTSVRAALTMEY 176

Query: 181 LIPFLREHIEGGYKEIEFDLSNITRTKREIEKLKRTLKMDKTQRINLISLASVWLNMSEN 240
           LIPF++EHI+G Y  I F+LSNI+ T+R+I +++  LK DKTQ+  L+ LA  WLNMSE 
Sbjct: 177 LIPFIKEHIDGKYVRINFNLSNISETRRKIIEMEEALKNDKTQKTGLVILALAWLNMSEE 236

Query: 241 AYRKGEKSLALWYYSVSLAYLNLTETEWAKAPYPYFVQGGLQKDRDMPYNITGIRKEVYE 300
           +Y +GEKSLALWYYSV+LAYLNLTE++WA AP+PYF+ GGLQ +RD+PYNITGIR+EVY 
Sbjct: 237 SYNRGEKSLALWYYSVALAYLNLTESKWANAPHPYFIGGGLQSERDVPYNITGIREEVYR 296

Query: 301 KALTFAKKKGKGPYAELLSNYVLLDLRMLDSYTLPKLSNPNNPLIKYYPSATYEAYLRLL 360
           +AL FAKKKGKGPYAELLSNYVLL+LR LD+YTLPKLSNPNNPL+KYYP ATYEAYLRLL
Sbjct: 297 RALAFAKKKGKGPYAELLSNYVLLELRELDTYTLPKLSNPNNPLLKYYPYATYEAYLRLL 356

Query: 361 GMVVAIESFASYFS 374
           GMV+A+E F+SYFS
Sbjct: 357 GMVMALEIFSSYFS 370


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.135    0.386 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137077754
Number of Sequences: 2977
Number of extensions: 5619995
Number of successful extensions: 17020
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17016
Number of HSP's gapped (non-prelim): 2
length of query: 374
length of database: 189,106,746
effective HSP length: 58
effective length of query: 316
effective length of database: 154,394,500
effective search space: 48788662000
effective search space used: 48788662000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)