BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0821 (PAB0821) DE:Hypothetical protein
         (145 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75031 hypothetical protein PAB0821 - Pyrococcus abyssi (st...   283  7e-76
pir||B71137 hypothetical protein PH0862 - Pyrococcus horikoshii ...   234  4e-61

>pir||G75031 hypothetical protein PAB0821 - Pyrococcus abyssi (strain Orsay)
           >gi|5458661|emb|CAB50148.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 145
           
 Score =  283 bits (716), Expect = 7e-76
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MQDSDLLSEIQELKRNLQVAFEVLAEIAQSYIRLLNLYAEYGGIGIDVAIPEIRNDPIAR 60
           MQDSDLLSEIQELKRNLQVAFEVLAEIAQSYIRLLNLYAEYGGIGIDVAIPEIRNDPIAR
Sbjct: 1   MQDSDLLSEIQELKRNLQVAFEVLAEIAQSYIRLLNLYAEYGGIGIDVAIPEIRNDPIAR 60

Query: 61  EIVKILFDLRRANVSQITRELKGRRGKASRNTVRAKLNELKNLGVVVEVPGERGKVYTLS 120
           EIVKILFDLRRANVSQITRELKGRRGKASRNTVRAKLNELKNLGVVVEVPGERGKVYTLS
Sbjct: 61  EIVKILFDLRRANVSQITRELKGRRGKASRNTVRAKLNELKNLGVVVEVPGERGKVYTLS 120

Query: 121 KDVVKRWLDLIGIPIKLEHIKDYLR 145
           KDVVKRWLDLIGIPIKLEHIKDYLR
Sbjct: 121 KDVVKRWLDLIGIPIKLEHIKDYLR 145


>pir||B71137 hypothetical protein PH0862 - Pyrococcus horikoshii
           >gi|3257273|dbj|BAA29956.1| (AP000003) 148aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 148
           
 Score =  234 bits (590), Expect = 4e-61
 Identities = 116/148 (78%), Positives = 134/148 (90%), Gaps = 3/148 (2%)

Query: 1   MQDSDLLSEIQELK---RNLQVAFEVLAEIAQSYIRLLNLYAEYGGIGIDVAIPEIRNDP 57
           MQDSDL  E+QELK   + L+ +F++L +IAQ+YIRLL++YAEYGGIGIDVAIPEIR DP
Sbjct: 1   MQDSDLTMEVQELKEALKALKASFDILTQIAQAYIRLLSIYAEYGGIGIDVAIPEIRQDP 60

Query: 58  IAREIVKILFDLRRANVSQITRELKGRRGKASRNTVRAKLNELKNLGVVVEVPGERGKVY 117
           IAREIVKILFDL+RAN+SQI RELKGRRGKASRNTVRAKLNEL  LGVVVEVPGERGKVY
Sbjct: 61  IAREIVKILFDLKRANISQIARELKGRRGKASRNTVRAKLNELVKLGVVVEVPGERGKVY 120

Query: 118 TLSKDVVKRWLDLIGIPIKLEHIKDYLR 145
           +LS+DV+KRWLD+IGIPI L+ IK+YLR
Sbjct: 121 SLSRDVIKRWLDIIGIPINLDQIKEYLR 148


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.385 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47028623
Number of Sequences: 2977
Number of extensions: 1680936
Number of successful extensions: 4738
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4735
Number of HSP's gapped (non-prelim): 2
length of query: 145
length of database: 189,106,746
effective HSP length: 55
effective length of query: 90
effective length of database: 156,189,961
effective search space: 14057096490
effective search space used: 14057096490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)