BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0822 (PAB0822) DE:Hypothetical protein
         (154 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75031 hypothetical protein PAB0822 - Pyrococcus abyssi (st...   300  6e-81
pir||A71137 hypothetical protein PH0861 - Pyrococcus horikoshii ...   231  3e-60

>pir||H75031 hypothetical protein PAB0822 - Pyrococcus abyssi (strain Orsay)
           >gi|5458662|emb|CAB50149.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 154
           
 Score =  300 bits (759), Expect = 6e-81
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MEKEKLEKVVEELIEEIKSAKTEEEVEVLERKVKAVKKLIEAYEGDKDLDKIAMLMDKLG 60
           MEKEKLEKVVEELIEEIKSAKTEEEVEVLERKVKAVKKLIEAYEGDKDLDKIAMLMDKLG
Sbjct: 1   MEKEKLEKVVEELIEEIKSAKTEEEVEVLERKVKAVKKLIEAYEGDKDLDKIAMLMDKLG 60

Query: 61  PMVEDILEPLQKLLADLYSPEKMQALGKSVAQFYKDLVEAGMDKETATELTKEFMKNINV 120
           PMVEDILEPLQKLLADLYSPEKMQALGKSVAQFYKDLVEAGMDKETATELTKEFMKNINV
Sbjct: 61  PMVEDILEPLQKLLADLYSPEKMQALGKSVAQFYKDLVEAGMDKETATELTKEFMKNINV 120

Query: 121 MRSLLEGLTGMLQKGKGFQVYVHGKEEKREETKE 154
           MRSLLEGLTGMLQKGKGFQVYVHGKEEKREETKE
Sbjct: 121 MRSLLEGLTGMLQKGKGFQVYVHGKEEKREETKE 154


>pir||A71137 hypothetical protein PH0861 - Pyrococcus horikoshii
           >gi|3257272|dbj|BAA29955.1| (AP000003) 157aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 157
           
 Score =  231 bits (583), Expect = 3e-60
 Identities = 118/152 (77%), Positives = 137/152 (89%), Gaps = 1/152 (0%)

Query: 3   KEKLEKVVEELIEEIKSAKTEEEVEVLERKVKAVKKLIEAYEGDKDLDKIAMLMDKLGPM 62
           K KLE+++EEL+EEIK+AKT+EEVEVL+ KVK+V+KLIEAYEGDKDLDKIAM+MDK+GPM
Sbjct: 7   KAKLEELLEELMEEIKNAKTKEEVEVLKEKVKSVEKLIEAYEGDKDLDKIAMMMDKIGPM 66

Query: 63  VEDILEPLQKLLADLYSPEKMQALGKSVAQFYKDLVEAGMDKETATELTKEFMKNINVMR 122
           +EDILEPLQKLL DLYSPEKMQALGKSVAQFYKDLVEAGMDKETATELTKE+MK+INVMR
Sbjct: 67  IEDILEPLQKLLEDLYSPEKMQALGKSVAQFYKDLVEAGMDKETATELTKEYMKSINVMR 126

Query: 123 SLLEGLTGMLQKGKGFQVYVHGKEEKREETKE 154
           +LLE  T M+Q+GK F+  +    EK EE KE
Sbjct: 127 NLLETFTSMIQRGKNFR-GIKIVTEKEEEEKE 157


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.309    0.131    0.333 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49849494
Number of Sequences: 2977
Number of extensions: 1957063
Number of successful extensions: 13454
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13452
Number of HSP's gapped (non-prelim): 2
length of query: 154
length of database: 189,106,746
effective HSP length: 64
effective length of query: 90
effective length of database: 150,803,578
effective search space: 13572322020
effective search space used: 13572322020
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.7 bits)
S2: 161 (67.1 bits)