BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0824 (PAB0824) DE:RNASE L INHIBITOR
(593 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75032 rnase l inhibitor PAB0824 - Pyrococcus abyssi (strai... 1201 0.0
pir||G71136 probable transport protein - Pyrococcus horikoshii >... 1126 0.0
sp|Q58129|Y719_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 688 0.0
gi|11497625 RNase L inhibitor [Archaeoglobus fulgidus] >gi|74455... 650 0.0
pir||F69093 RNase L inhibitor - Methanobacterium thermoautotroph... 645 0.0
gb|AAG20650.1| (AE005134) RNase L inhibitor homolog; Rli [Haloba... 612 e-174
emb|CAC12610.1| (AL445067) probable RNase L inhibitor [Thermopla... 594 e-168
pir||H72712 probable RNase L inhibitor APE1119 - Aeropyrum perni... 593 e-168
gb|AAK40626.1| RNase L inhibitor [Sulfolobus solfataricus] 573 e-162
pir||T26761 hypothetical protein Y39E4B.1 - Caenorhabditis elega... 566 e-160
emb|CAC14519.1| (AL446004) bacterial-type ABC transport ATP-bind... 550 e-155
dbj|BAB01911.1| (AP001307) RNase L inhibitor [Arabidopsis thaliana] 548 e-155
gi|6320296 putative member of nontransporter group of ATP-bindin... 548 e-155
pir||T04442 ABC-type transport protein T18B16.180 - Arabidopsis ... 547 e-154
pir||S63672 RNase L inhibitor (clone 8) - human >gi|1587696|prf|... 547 e-154
gi|7657518 ATP-binding cassette, subfamily E, member 1; ribonucl... 544 e-153
gb|AAF50342.1| (AE003553) CG5651 gene product [Drosophila melano... 542 e-153
pir||T39452 probable RNASE L inhibitor - fission yeast (Schizos... 534 e-150
gi|4506559 ATP-binding cassette, sub-family E, member 1; Ribonuc... 530 e-149
emb|CAA52920.1| (X74987) 2'-5' oligoadenylate binding protein [H... 354 2e-96
gi|11436923 ATP-binding cassette, sub-family E, member 1 [Homo s... 326 3e-88
pir||B82393 ABC transporter, ATP-binding protein VCA0977 [import... 131 3e-29
pir||C81128 ABC transporter, ATP-binding protein NMB1051 [import... 126 8e-28
emb|CAB45011.1| (AJ242839) putative ATP-binding protein [Neisser... 125 1e-27
pir||A81893 probable ABC transporter ATP-binding protein NMA1249... 124 2e-27
pir||D70867 hypothetical protein Rv2477c - Mycobacterium tubercu... 122 1e-26
emb|CAB44947.1| (AJ242840) putative ATP-binding protein [Neisser... 122 2e-26
emb|CAB44978.1| (AJ242842) putative ATP-binding protein [Neisser... 121 3e-26
emb|CAB71215.1| (AL138538) putative ABC transpoter ATP-binding p... 120 4e-26
gb|AAK42084.1| ABC transporter, ATP binding protein. [Sulfolobus... 118 2e-25
emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related ... 117 3e-25
emb|CAB81023.1| (AL161576) RNase L inhibitor-like protein [Arabi... 117 3e-25
gb|AAK42217.1| ABC transporter [Sulfolobus solfataricus] 117 4e-25
pir||T45239 probable ABC transporter ATP-binding protein [import... 116 7e-25
pir||S76152 hypothetical protein - Synechocystis sp. (strain PCC... 113 6e-24
pir||D82290 ABC transporter, ATP-binding protein VC0698 [importe... 112 1e-23
sp|Q57242|UUP1_HAEIN ABC TRANSPORTER ATP-BINDING PROTEIN UUP-1 >... 112 1e-23
pir||C82743 ABC transporter ATP-binding protein XF0944 [imported... 111 2e-23
pir||D69159 methyl coenzyme M reductase system, component A2 hom... 109 9e-23
pir||B72417 sugar ABC transporter, ATP-binding protein - Thermot... 109 9e-23
sp|P45127|YJJK_HAEIN ABC TRANSPORTER ATP-BINDING PROTEIN HI1252 ... 108 2e-22
pir||F81781 ABC transporter ATP-binding protein NMA2101 [importe... 108 2e-22
pir||H81205 ABC transporter, ATP-binding protein NMB0387 [import... 107 3e-22
sp|P37797|YJJK_ECOLI ABC TRANSPORTER ATP-BINDING PROTEIN YJJK >g... 105 2e-21
pir||S56615 hypothetical protein f579 - Escherichia coli >gi|537... 105 2e-21
pir||E71525 probable ABC transporter protein ATPase - Chlamydia ... 104 3e-21
pir||E83071 probable ATP-binding component of ABC transporter PA... 103 5e-21
gb|AAB85511.1| (AE000874) methyl coenzyme M reductase system, co... 103 6e-21
pir||E72129 ABC transporter protein ATPase - Chlamydophila pneum... 102 8e-21
pir||A64455 methyl coenzyme M reductase (EC 1.8.-.-) component A... 102 8e-21
pir||B36921 methyl coenzyme M reductase (EC 1.8.-.-) component A... 102 1e-20
gb|AAG19353.1| (AE005030) spermidine/putrescine ABC transporter ... 102 1e-20
gb|AAA72361.1| (L11748) methyl coenzyme M reductase system compo... 102 1e-20
pir||D72415 zinc ABC transporter, ATP-binding protein - Thermoto... 101 2e-20
gb|AAF73579.1| (AE002331) ABC transporter, ATP-binding protein [... 101 2e-20
pir||D69813 ABC transporter (ATP-binding protein) homolog yfmM -... 101 3e-20
pir||C71220 probable sugar-binding transport ATP-binding protein... 100 7e-20
pir||D75187 probable maltose/maltodextrin transport ATP-binding ... 99 1e-19
sp|Q57855|Y412_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 99 2e-19
pir||B69756 ABC transporter (ATP-binding protein) homolog ycdI -... 97 5e-19
dbj|BAB05113.1| (AP001511) ABC transporter (ATP-binding protein)... 97 6e-19
gb|AAK43169.1| Arabinose ABC transporter, ATP-binding protein [S... 96 8e-19
pir||C71197 probable ATP-binding transport protein - Pyrococcus ... 96 1e-18
pir||T48849 iron sulfur protein [imported] - Methanothermus ferv... 96 1e-18
emb|CAC11290.1| (AL445063) probable ATP-binding protein [Thermop... 96 1e-18
pir||C69995 anion transport ABC transporter (ATP-bindi) homolog ... 95 2e-18
pir||C71645 ferric transport ATP-binding protein (afuC) RP834 - ... 95 2e-18
gi|11498626 ABC transporter, ATP-binding protein [Archaeoglobus ... 95 2e-18
pir||H75157 daunorubicin resistance ATP-binding protein (drra-2)... 94 3e-18
gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dp... 94 3e-18
pir||A82429 iron(III) ABC transporter, ATP-binding protein VCA06... 94 4e-18
gb|AAK41273.1| Sugar ABC transporter [Sulfolobus solfataricus] 93 7e-18
pir||F72421 iron(III) ABC transporter, ATP-binding protein - The... 92 2e-17
gb|AAD05298.1| (AF082511) putative ATP-binding protein MglA [Tre... 92 2e-17
pir||G75124 abc-transporter ATP-binding protein PAB0545 - Pyroco... 92 2e-17
pir||E81105 ABC transporter, ATP-binding protein NMB1240 [import... 92 2e-17
pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf... 91 3e-17
pir||B81910 probable ABC-transporter ATP-binding protein NMA1409... 91 3e-17
pir||T44799 iron transport ATP-binding protein irp1D [imported] ... 91 4e-17
pir||E72314 ribose ABC transporter, ATP-binding protein - Thermo... 91 4e-17
sp|P45535|YHES_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 91 4e-17
pir||H82377 ABC transporter, ATP-binding protein VCA1101 [import... 91 4e-17
emb|CAC14366.1| (AL445963) Fe uptake system permease [Streptomyc... 90 5e-17
pir||E72378 sugar ABC transporter, ATP-binding protein - Thermot... 90 6e-17
pir||H71241 probable multiple sugar-binding transport ATP-bindin... 90 6e-17
dbj|BAA75384.1| (AB013374) MsmX [Bacillus halodurans] 90 6e-17
dbj|BAB04231.1| (AP001508) ABC transporter (ATP-binding protein)... 90 6e-17
pir||T40080 probable ABC transporter - fission yeast (Schizosac... 90 8e-17
pir||S75652 ABC-type transport protein sll1878 - Synechocystis s... 89 1e-16
pir||D64507 methyl coenzyme M reductase system, component A2 hom... 89 1e-16
pir||T35675 probable ABC-transport system ATP binding protein - ... 89 1e-16
gb|AAB99680.1| (U67606) methyl coenzyme M reductase system, comp... 89 1e-16
pir||G75202 dipeptide abc transporter, dipeptide-binding protein... 89 1e-16
pir||B75207 multiple sugar-binding transport ATP-binding protein... 89 1e-16
pir||B71128 probable iron (III) dicitrate transport ATP-binding ... 89 1e-16
emb|CAA91229.1| (Z56283) orf1 [Lactobacillus helveticus] 89 2e-16
gi|11498246 nitrate ABC transporter, ATP-binding protein (nrtC-2... 89 2e-16
pir||E82959 zinc transport protein ZnuC PA5500 [imported] - Pseu... 88 2e-16
sp|Q00752|MSMK_STRMU MULTIPLE SUGAR-BINDING TRANSPORT ATP-BINDIN... 88 3e-16
pir||C70355 ABC transporter - Aquifex aeolicus >gi|2983231|gb|AA... 88 3e-16
pir||D69180 ABC transporter - Methanobacterium thermoautotrophic... 88 3e-16
dbj|BAB07815.1| (AB036417) CysA protein [Acetabularia acetabulum] 88 3e-16
pir||F81257 probable hemein uptake system ATP-binding protein Cj... 88 3e-16
pir||B36931 hypothetical protein (sfp0 5' region) - Bacillus sub... 87 4e-16
gb|AAD23570.1|AF121946_1 (AF121946) maltose transport protein Ma... 87 4e-16
gb|AAD24578.1|AF126010_1 (AF126010) trehalose/maltose transport ... 87 4e-16
pir||H72272 sugar ABC transporter, ATP-binding protein - Thermot... 87 4e-16
pir||F75377 ABC transporter, ATP-binding protein - Deinococcus r... 87 4e-16
pir||C72267 ABC transporter, ATP-binding protein - Thermotoga ma... 87 5e-16
sp|Q57554|Y089_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 87 5e-16
pir||H83609 sulfate transport protein CysA PA0280 [imported] - P... 87 5e-16
pir||T45470 ATP-binding ABC transport protein [imported] - Erysi... 87 7e-16
pir||H71886 probable ABC transporter, ATP-binding protein - Heli... 87 7e-16
emb|CAA67569.1| (X99127) ATP binding protein [Staphylococcus epi... 87 7e-16
pir||B72369 ABC transporter, ATP-binding protein - Thermotoga ma... 87 7e-16
emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding pr... 87 7e-16
pir||E64626 ABC transporter, ATP-binding protein - Helicobacter ... 87 7e-16
gi|11499064 ABC transporter, ATP-binding protein [Archaeoglobus ... 87 7e-16
gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dp... 86 9e-16
emb|CAA67415.1| (X98917) orf4 [Methanopyrus kandleri] 86 9e-16
gi|11499407 ABC transporter, ATP-binding protein [Archaeoglobus ... 86 9e-16
pir||G75169 abc transporter ATP-binding protein PAB0350 - Pyroco... 86 9e-16
pir||A71243 probable maltose/maltodextrin transport ATP-binding ... 86 1e-15
pir||G75203 abc transporter, ATP-binding protein PAB0103 - Pyroc... 86 1e-15
pir||F75035 iron (iii) abc transporter, ATP-binding protein (hem... 86 1e-15
gb|AAF22612.1|AF161268_1 (AF161268) ATP binding protein MalK [Th... 86 1e-15
gb|AAF49142.1| (AE003516) CG9330 gene product [Drosophila melano... 86 1e-15
gb|AAK42824.1| ABC transporter, ATP binding protein [Sulfolobus ... 85 2e-15
sp|P45167|UUP2_HAEIN ABC TRANSPORTER ATP-BINDING PROTEIN UUP-2 >... 85 2e-15
emb|CAA07722.1| (AJ007906) FhuC [Rhizobium leguminosarum] 85 2e-15
pir||A75208 sugar transport ATP-binding protein. PAB2232 - Pyroc... 85 2e-15
pir||E75108 daunorubicin resistance ATP-binding protein (drra-1)... 85 2e-15
sp|P43672|UUP_ECOLI ABC TRANSPORTER ATP-BINDING PROTEIN UUP >gi|... 85 2e-15
emb|CAA70589.1| (Y09439) UUP protein [Escherichia coli] 85 2e-15
gb|AAK41416.1| Sugar ABC transporter [Sulfolobus solfataricus] 85 2e-15
pir||S61910 hypothetical protein 5 - Streptococcus parasanguis >... 85 2e-15
sp|P44656|Y354_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 85 2e-15
sp|P55604|Y4OS_RHISN PROBABLE ABC TRANSPORTER ATP-BINDING PROTEI... 85 2e-15
dbj|BAB03314.1| (AB011415) AlgS [Sphingomonas sp.] 85 2e-15
pir||G71131 probable ATP-binding protein - Pyrococcus horikoshii... 85 3e-15
pir||T35090 probable ABC transport ATP-binding subunit - Strepto... 85 3e-15
dbj|BAB04758.1| (AP001510) iron (III) dicitrate transport system... 85 3e-15
sp|P42360|YSC1_STRGC HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 84 4e-15
sp|P97027|SSUB_BACSU PUTATIVE ALIPHATIC SULFONATES TRANSPORT ATP... 84 4e-15
pir||T46652 ABC transporter ZurA [imported] - Listeria monocytog... 84 4e-15
pir||D72492 probable ABC transporter ATP-binding protein APE2579... 84 4e-15
dbj|BAB04800.1| (AP001510) ferrichrome ABC transporter (ATP-bind... 84 4e-15
dbj|BAB05817.1| (AP001514) ABC transporter (ATP-binding protein)... 84 4e-15
gb|AAG24255.1| (AY009114) YckI [Bacillus subtilis] 84 4e-15
dbj|BAB07160.1| (AP001518) L-arabinose ABC transporter (ATP-bind... 84 5e-15
sp|P16676|CYSA_ECOLI SULFATE TRANSPORT ATP-BINDING PROTEIN CYSA ... 84 5e-15
pir||C69992 ABC transporter (ATP-binding protein) homolog ytgB -... 84 5e-15
pir||G70022 iron(III) dicitrate transport permease homolog yusV ... 84 5e-15
dbj|BAB05182.1| (AP001512) ABC transporter (ATP-binding protein)... 83 6e-15
gi|11498996 iron (III) ABC transporter, ATP-binding protein (hem... 83 6e-15
pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf... 83 6e-15
emb|CAB95940.1| (AL359989) putative ABC transporter ATP-binding ... 83 6e-15
pir||F64751 probable ABC-type transport protein b0262 - Escheric... 83 8e-15
sp|P37009|AFUC_ECOLI PUTATIVE FERRIC TRANSPORT ATP-BINDING PROTE... 83 8e-15
dbj|BAB04472.1| (AP001509) ABC transporter (ATP-binding protein)... 83 8e-15
gi|7524830 sulfate transport system permease protein [Chlorella ... 83 8e-15
gi|10956101 ABC transporter subunit PenL [Pediococcus pentosaceu... 83 8e-15
pir||F72756 probable multiple sugar-binding transport ATP-bindin... 83 8e-15
gb|AAG20921.1| (AE005158) sn-glycerol-3-phosphate transport syst... 83 8e-15
pir||I40452 ABC-type transport system probable ATP binding subun... 83 1e-14
pir||E69812 ferrichrome ABC transporter (ATP-binding p) homolog ... 83 1e-14
pir||G69192 ABC transporter (glutamine transport ATP-binding pro... 83 1e-14
pir||C69223 anion permease - Methanobacterium thermoautotrophicu... 83 1e-14
pir||A72618 probable oligopeptide transport ATP-binding protein ... 83 1e-14
pir||B83571 probable ATP-binding component of ABC transporter PA... 83 1e-14
gb|AAA23639.1| (M32101) cysA [Escherichia coli] 82 1e-14
gb|AAK40417.1| ABC transporter, ATP binding protein [Sulfolobus ... 82 1e-14
pir||S75436 hypothetical protein c05019 - Sulfolobus solfataricu... 82 1e-14
sp|P39456|YCKI_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BIN... 82 1e-14
pir||E70952 probable sugC protein - Mycobacterium tuberculosis (... 82 1e-14
pir||E75122 hypothetical protein PAB1845 - Pyrococcus abyssi (st... 82 1e-14
pir||C75077 iron (iii) abc transporter, ATP-binding protein (hem... 82 1e-14
emb|CAB65650.1| (AJ252160) putative ABC-transporter ATP-binding ... 82 1e-14
emb|CAB71212.1| (AL138538) putative ABC transporter ATP-binding ... 82 1e-14
pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC... 82 1e-14
pir||E82120 zinc ABC transporter, ATP-binding protein VC2082 [im... 82 1e-14
dbj|BAB04009.1| (AP001508) ABC transporter (ATP-binding protein)... 82 1e-14
dbj|BAB06933.1| (AP001518) ABC transporter (ATP-binding protein)... 82 1e-14
gb|AAK40988.1| ABC transporter, ATP binding protein. [Sulfolobus... 82 2e-14
emb|CAA29254.1| (X05810) fhuC product (AA 1-265) [Escherichia coli] 82 2e-14
gb|AAB61769.1| (M12486) fhuC [Escherichia coli] >gi|473810|dbj|B... 82 2e-14
sp|P54537|YQIZ_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BIN... 82 2e-14
sp|P07821|FHUC_ECOLI FERRICHROME TRANSPORT ATP-BINDING PROTEIN F... 82 2e-14
pir||C71237 probable transport-ATP binding protein - Pyrococcus ... 82 2e-14
pir||C71081 probable resistance ATP-binding protein - Pyrococcus... 82 2e-14
emb|CAB57615.1| (Y18930) ABC transporter/ATP-binding protein [Su... 82 2e-14
pir||H81971 probable ABC transporter ATP-binding protein NMA0535... 82 2e-14
pir||A83621 probable ATP-binding component of ABC transporter PA... 82 2e-14
dbj|BAB05475.1| (AP001513) ABC transporter (ATP-binding protein)... 82 2e-14
emb|CAC12530.1| (AL445067) ferrichrome ABC transporter (ATP-bind... 82 2e-14
pir||H72356 amino acid ABC transporter, ATP-binding protein - Th... 82 2e-14
pir||B82185 glycerol-3-phosphate ABC transporter, ATP-binding pr... 82 2e-14
pir||E83154 probable ATP-binding component of ABC taurine transp... 82 2e-14
pir||C64496 ABC transporter ATP-binding protein - Methanococcus ... 81 3e-14
pir||E69162 sulfate transport system ATP-binding - Methanobacter... 81 3e-14
gb|AAC31907.1| (AF075709) ABC transporter ATP-binding subunit [P... 81 3e-14
emb|CAB42874.1| (Y19002) PrtD protein [Erwinia amylovora] 81 3e-14
pir||A75184 ATP-binding transport protein PAB0434 - Pyrococcus a... 81 3e-14
gi|11467821 probable transport protein [Nephroselmis olivacea] >... 81 3e-14
pir||C81026 ABC transporter, ATP-binding protein NMB1919 [import... 81 3e-14
gb|AAG20488.1| (AE005121) sulfate transport system ATP-binding p... 81 3e-14
dbj|BAA05388.1| (D26358) CmpC [Synechococcus sp.] 81 4e-14
sp|Q57399|YE70_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 81 4e-14
pir||S77386 nitrate transport protein D-3 - Synechocystis sp. (s... 81 4e-14
pir||A70001 ABC transporter (ATP-binding protein) homolog ytsC -... 81 4e-14
pir||T31078 probable ABC-transporter TycE - Brevibacillus brevis... 81 4e-14
pir||E72224 ABC transporter, ATP-binding protein - Thermotoga ma... 81 4e-14
pir||F70032 ABC transporter (ATP-binding protein) homolog yvcR -... 80 5e-14
pir||D72371 oligopeptide ABC transporter, ATP-binding protein - ... 80 5e-14
dbj|BAB04930.1| (AP001511) ABC transporter (ATP-binding protein)... 80 7e-14
gb|AAK42315.1| ABC transporter, ATP binding protein. [Sulfolobus... 80 7e-14
gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sul... 80 7e-14
pir||S74048 probable daunorubicin resistance protein - Sulfolobu... 80 7e-14
pir||E70337 ABC transporter - Aquifex aeolicus >gi|2983089|gb|AA... 80 7e-14
pir||C72576 probable glutamine transport ATP-binding protein APE... 80 7e-14
pir||A83142 probable ATP-binding component of ABC transporter PA... 80 7e-14
gb|AAD33527.2|AF132117_4 (AF132117) FhuA [Staphylococcus aureus]... 80 9e-14
emb|CAC05759.1| (AL391751) putative ABC transporter ATP-binding ... 80 9e-14
sp|P45171|POTA_HAEIN SPERMIDINE/PUTRESCINE TRANSPORT ATP-BINDING... 80 9e-14
dbj|BAA08631.1| (D49826) LipB [Serratia marcescens] 80 9e-14
gi|11499468 daunorubicin resistance ATP-binding protein (drrA) [... 80 9e-14
pir||A70158 ABC transporter, ATP-binding protein homolog - Lyme ... 80 9e-14
pir||H72342 ABC transporter, ATP-binding protein - Thermotoga ma... 80 9e-14
emb|CAB88835.1| (AL353832) putative ABC-transport protein, ATP-b... 80 9e-14
pir||G83358 probable ATP-binding component of ABC transporter PA... 80 9e-14
dbj|BAB07011.1| (AP001518) ferrichrome ABC transporter (ATP-bind... 80 9e-14
dbj|BAA77930.1| (D83536) Hypothetical ABC transporter ATP-bindin... 79 1e-13
sp|P30293|LIVG_SALTY HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRA... 79 1e-13
sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 79 1e-13
pir||F72405 ABC transporter, ATP-binding protein - Thermotoga ma... 79 1e-13
pir||D72257 hypothetical protein TM1403 - Thermotoga maritima (s... 79 1e-13
pir||G75200 cobalt abc transporter, ATP-binding protein (cbio) P... 79 1e-13
pir||D83215 probable ATP-binding component of ABC transporter PA... 79 1e-13
sp|P50332|NODI_RHIGA NODULATION ATP-BINDING PROTEIN I >gi|100191... 79 1e-13
pir||C65145 nikE protein - Escherichia coli >gi|466616|gb|AAB184... 79 2e-13
pir||D75142 oligopeptide transport ATP-binding protein appf PAB0... 79 2e-13
gb|AAD56937.1|AF180520_2 (AF180520) ATP-binding protein MtsB [St... 79 2e-13
dbj|BAB07224.1| (AP001519) ABC transporter (ATP-binding protein)... 79 2e-13
gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (d... 78 2e-13
gb|AAK43145.1| ABC transporter, ATP binding protein [Sulfolobus ... 78 2e-13
pir||E70394 ABC transporter (hlyB subfamily) - Aquifex aeolicus ... 78 2e-13
pir||B71030 probable ATP-binding transport protein - Pyrococcus ... 78 2e-13
gb|AAC27495.1| (AF077856) PotA [Actinobacillus actinomycetemcomi... 78 2e-13
pir||F71654 ABC transporter ATP-binding protein (abcT2) RP508 - ... 78 2e-13
pir||T03550 ATP-binding transport protein polk - Rhodobacter cap... 78 3e-13
pir||B64458 high-affinity branched-chain amino acid transport AT... 78 3e-13
gb|AAD13681.1| (AF035434) elongation factor 3 [Aspergillus fumig... 78 3e-13
pir||H75151 abc transporter, ATP-binding protein PAB0249 - Pyroc... 78 3e-13
pir||D70986 probable ABC transporter Rv1747 - Mycobacterium tube... 78 4e-13
pir||F71163 probable oligopeptide transport ATP-binding protein ... 78 4e-13
pir||T44412 ABC transporter (ATP-binding protein) homolog ybxA [... 78 4e-13
gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus ... 77 5e-13
pir||T45204 probable sugar ABC transporter ugpC [imported] - Myc... 77 5e-13
gb|AAC72253.1| (U91581) LctF [Lactococcus lactis subsp. lactis] 77 5e-13
pir||F72230 ABC transporter, ATP-binding protein - Thermotoga ma... 77 5e-13
pir||H72555 probable transporter ATP-binding protein APE1732 - A... 77 5e-13
gb|AAF28101.1|AF148682_1 (AF148682) oligopeptide permease F prot... 77 5e-13
emb|CAB95741.1| (AJ276960) putative ABC transporter [Staphylococ... 77 5e-13
pir||G83214 probable ATP-binding component of ABC transporter PA... 77 5e-13
sp|P23596|PRTD_ERWCH PROTEASES SECRETION ATP-BINDING PROTEIN PRT... 77 6e-13
sp|P49938|FHUC_BACSU FERRICHROME TRANSPORT ATP-BINDING PROTEIN F... 77 6e-13
sp|Q58762|YD67_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 77 6e-13
pir||B71234 probable transport protein - Pyrococcus horikoshii >... 77 6e-13
dbj|BAA35937.1| (D90747) Heterocyst maturation protein (devA) ho... 77 6e-13
emb|CAB37661.1| (AJ224479) cdd4-like protein [Bacillus sphaericus] 77 6e-13
gb|AAK41395.1| ABC transporter, ATP binding protein [Sulfolobus ... 76 8e-13
gb|AAK42130.1| Antibiotic ABC transporter ATP binding protein [S... 76 8e-13
pir||D69763 ferrichrome ABC transporter (ATP-binding p) homolog ... 76 8e-13
emb|CAA67644.1| (X99258) ATP-binding subunit of ABC-transport sy... 76 8e-13
pir||A72282 oligopeptide ABC transporter, ATP-binding protein - ... 76 8e-13
pir||G72543 probable ABC transporter ATP-binding protein APE1635... 76 1e-12
sp|Q58206|Y796_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 76 1e-12
pir||S74440 iron(III) dicitrate transport system permease protei... 76 1e-12
gi|11497707 nitrate ABC transporter, ATP-binding protein (nrtC-1... 76 1e-12
gb|AAF81672.1|AF232688_1 (AF232688) SloA [Streptococcus mutans] 76 1e-12
gb|AAG10493.1|AF279106_55 (AF279106) predicted ABC transporter A... 76 1e-12
dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 76 1e-12
gb|AAG20448.1| (AE005117) oligopeptide ABC transporter ATP-bindi... 76 1e-12
sp|Q50294|Y179_MYCPN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 76 1e-12
gb|AAB49429.1| (U73111) glutamine transport ATP-binding protein ... 76 1e-12
pir||T46950 probable ATPase component of 2-aminoethylphosphonate... 76 1e-12
pir||B69065 ABC transporter (ATP-binding, daunorubicin resistanc... 76 1e-12
pir||H71006 probable ATP-binding transport protein - Pyrococcus ... 76 1e-12
pir||C72720 probable oligopeptide transport ATP-binding protein ... 76 1e-12
gb|AAF16567.1|AC012563_20 (AC012563) putative ABC transporter; 6... 76 1e-12
dbj|BAB04164.1| (AP001508) ABC transporter (ATP-binding protein)... 76 1e-12
dbj|BAB05797.1| (AP001514) oligopeptide ABC transporter (ATP-bin... 76 1e-12
gb|AAK41557.1| Antibiotic ABC transporter, ATP binding protein [... 75 2e-12
sp|P25885|YHBG_RHIME PROBABLE ABC TRANSPORTER ATP-BINDING PROTEI... 75 2e-12
sp|P47425|Y179_MYCGE HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 75 2e-12
pir||T36053 probable ABC-type transport protein cydCD - Streptom... 75 2e-12
pir||E72384 ABC transporter, ATP-binding protein - Thermotoga ma... 75 2e-12
gb|AAF77616.1|AF151721_2 (AF151721) oligopeptide permease subuni... 75 2e-12
gb|AAG37225.1|AF298223_3 (AF298223) glutamine ABC transporter, A... 75 2e-12
pir||F37074 leucine transport protein livG - Escherichia coli >g... 75 2e-12
sp|P22730|LIVG_ECOLI HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRA... 75 2e-12
sp|P10346|GLNQ_ECOLI GLUTAMINE TRANSPORT ATP-BINDING PROTEIN GLN... 75 2e-12
pir||E71123 probable sugar transport ATP-binding protein - Pyroc... 75 2e-12
pir||E72598 probable ABC-transporter ATP-binding protein APE1253... 75 2e-12
pir||G75380 peptide ABC transporter, ATP-binding protein - Deino... 75 2e-12
pir||C75593 probable ABC transporter, ATP-binding protein - Dein... 75 2e-12
gb|AAB20257.1| (S63858) orf 5' of rpoN [Rhizobium, NGR234, Pepti... 75 3e-12
dbj|BAA76420.1| (AB024992) multidrug resistance protein [Cicer a... 75 3e-12
pir||E72536 probable oligopeptide transport ATP-binding protein ... 75 3e-12
dbj|BAA14778.1| (D90763) Oligopeptide transport ATP-binding prot... 74 4e-12
sp|P76027|OPPD_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 74 4e-12
pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AA... 74 4e-12
pir||T35267 probable ABC transporter - Streptomyces coelicolor >... 74 4e-12
pir||I56273 ATP-dependent transport protein SapT - Lactobacillus... 74 5e-12
sp|P94366|CYDC_BACSU TRANSPORT ATP-BINDING PROTEIN CYDC >gi|7445... 74 5e-12
emb|CAC05751.1| (AL391751) putative peptide transport system ATP... 74 5e-12
dbj|BAB07392.1| (AP001519) ABC transporter (ATP-binding protein)... 74 5e-12
pir||JN0849 hypothetical 35K protein - Streptomyces lividans >gi... 73 7e-12
emb|CAA79469.1| (Z18947) NisT protein [Lactococcus lactis] 73 7e-12
gb|AAA92009.1| (U37409) ABC multiple sugar transport protein [La... 73 7e-12
gi|11498669 ABC transporter, ATP-binding protein, putative [Arch... 73 7e-12
dbj|BAA33891.1| (AB018533) elongation factor 3 [Candida melibios... 73 7e-12
dbj|BAA33892.1| (AB018534) elongation factor 3 [Candida zeylanoi... 73 7e-12
gi|4505771 ATP-binding cassette, subfamily B, member 4, isoform ... 73 9e-12
sp|Q01937|LACK_AGRRD LACTOSE TRANSPORT ATP-BINDING PROTEIN LACK ... 73 9e-12
gb|AAA80299.1| (U23471) ABC-type permease homolog [Rhizobium leg... 73 9e-12
sp|Q58429|YA23_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 73 9e-12
sp|P72335|NODI_RHIS3 NODULATION ATP-BINDING PROTEIN I >gi|153162... 73 9e-12
pir||S77337 ABC-type transport protein sll1725 - Synechocystis s... 73 9e-12
emb|CAA75761.1| (Y15759) ORF1 [Streptomyces rochei] 73 9e-12
gi|9961252 ATP-binding cassette, subfamily B, member 4, isoform ... 73 9e-12
emb|CAC11998.1| (AL445065) ABC transporter related protein [Ther... 73 9e-12
gb|AAK41504.1| ABC transporter, ATP binding protein [Sulfolobus ... 73 1e-11
sp|P15031|FECE_ECOLI IRON(III) DICITRATE TRANSPORT ATP-BINDING P... 73 1e-11
pir||T05802 hypothetical protein M7J2.180 - Arabidopsis thaliana... 73 1e-11
pir||D75308 sugar ABC transportor, ATP-binding protein - Deinoco... 73 1e-11
emb|CAB81857.1| (AL161691) putative ABC-transporter ATP-binding ... 73 1e-11
pir||S05329 inner membrane protein malK - Salmonella typhimurium 72 2e-11
sp|P54591|YHCG_BACSU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 72 2e-11
pir||S74812 ABC-type transport protein sll1623 - Synechocystis s... 72 2e-11
sp|P55476|NODI_RHISN NODULATION ATP-BINDING PROTEIN I >gi|218242... 72 2e-11
pir||T03543 probable cobalt transport system ATP-binding protein... 72 2e-11
gb|AAC69841.1| (AF076683) oligopeptide transporter putative ATPa... 72 2e-11
pir||E81936 probable amino acid permease ATP-binding protein NMA... 72 2e-11
sp|P23858|POTA_ECOLI SPERMIDINE/PUTRESCINE TRANSPORT ATP-BINDING... 72 2e-11
sp|P37774|YECC_ECOLI HYPOTHETICAL AMINO-ACID ABC TRANSPORTER ATP... 72 2e-11
sp|O30506|AOTP_PSEAE ARGININE/ORNITHINE TRANSPORT ATP-BINDING PR... 72 2e-11
pir||G81168 amino acid ABC transporter, ATP-binding protein NMB0... 72 2e-11
dbj|BAA96370.1| (AB035331) ABC protein [Physarum polycephalum] 72 2e-11
pir||E82242 oligopeptide ABC transporter, ATP-binding protein VC... 72 2e-11
pir||T04441 hypothetical protein T18B16.170 - Arabidopsis thalia... 71 3e-11
gb|AAC61484.1| (AF082738) ABC transporter ATP-binding protein [S... 71 3e-11
pir||T29110 multidrug resistance protein 1 - Aureobasidium pullu... 71 3e-11
pir||T04229 ABC-type transport protein F14M19.30 - Arabidopsis t... 71 3e-11
gb|AAF81232.1| (AF263012) ABC transporter ATP binding protein [S... 71 3e-11
gb|AAG22038.1|AF305387_5 (AF305387) OppF [Bacillus thuringiensis] 71 3e-11
sp|P37608|LCN3_LACLA LACTICIN 481/LACTOCOCCIN TRANSPORT ATP-BIND... 71 5e-11
pir||S60887 ferric exochelin uptake protein fxuB - Mycobacterium... 71 5e-11
sp|P45052|OPPD_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 71 5e-11
pir||H70109 ABC transporter, ATP-binding protein homolog - Lyme ... 71 5e-11
pir||E70485 ABC transporter - Aquifex aeolicus >gi|2984365|gb|AA... 71 5e-11
pir||T22748 hypothetical protein F55G11.9 - Caenorhabditis elega... 71 5e-11
dbj|BAB02129.1| (AP000386) P-glycoprotein; multi-drug resistance... 71 5e-11
pir||D82146 transport ATP-binding protein MsbA VC1878 [imported]... 71 5e-11
sp|P02914|MALK_ECOLI MALTOSE/MALTODEXTRIN TRANSPORT ATP-BINDING ... 70 6e-11
gi|11497906 polysaccharide ABC transporter, ATP-binding protein ... 70 6e-11
gb|AAC27811.1| (U64516) unknown [Shigella dysenteriae] 70 6e-11
gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola] 70 6e-11
pir||T27121 hypothetical protein Y53C10A.9 - Caenorhabditis eleg... 70 6e-11
pir||T50566 probable ABC-type transport protein, ATP-binding com... 70 6e-11
emb|CAC05300.1| (AJ293860) ATP-binding protein [Lactobacillus re... 70 6e-11
gb|AAA59575.1| (M14758) P-glycoprotein [Homo sapiens] 70 8e-11
sp|P08183|MDR1_HUMAN MULTIDRUG RESISTANCE PROTEIN 1 (P-GLYCOPROT... 70 8e-11
sp|P97998|MDL1_CANAL ATP-DEPENDENT PERMEASE MDL1 >gi|1913936|emb... 70 8e-11
gi|4505769 ATP-binding cassette, sub-family B (MDR/TAP), member ... 70 8e-11
pir||B70394 ABC transporter - Aquifex aeolicus >gi|2983576|gb|AA... 70 8e-11
gi|11419215 ATP-binding cassette, sub-family B (MDR/TAP), member... 70 8e-11
>pir||F75032 rnase l inhibitor PAB0824 - Pyrococcus abyssi (strain Orsay)
>gi|5458668|emb|CAB50155.1| (AJ248287) RNASE L INHIBITOR
[Pyrococcus abyssi]
Length = 593
Score = 1201 bits (3072), Expect = 0.0
Identities = 593/593 (100%), Positives = 593/593 (100%)
Query: 1 MVRKMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGI 60
MVRKMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGI
Sbjct: 1 MVRKMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGI 60
Query: 61 CVHKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAV 120
CVHKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAV
Sbjct: 61 CVHKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAV 120
Query: 121 KILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG 180
KILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG
Sbjct: 121 KILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG 180
Query: 181 KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE 240
KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE
Sbjct: 181 KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE 240
Query: 241 PSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP 300
PSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP
Sbjct: 241 PSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP 300
Query: 301 KGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEV 360
KGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEV
Sbjct: 301 KGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEV 360
Query: 361 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTV 420
EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTV
Sbjct: 361 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTV 420
Query: 421 YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYL 480
YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYL
Sbjct: 421 YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYL 480
Query: 481 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGR 540
LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGR
Sbjct: 481 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGR 540
Query: 541 ALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYYA 593
ALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYYA
Sbjct: 541 ALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYYA 593
>pir||G71136 probable transport protein - Pyrococcus horikoshii
>gi|3257270|dbj|BAA29953.1| (AP000003) 590aa long
hypothetical transport protein [Pyrococcus horikoshii]
Length = 590
Score = 1126 bits (2881), Expect = 0.0
Identities = 547/588 (93%), Positives = 575/588 (97%)
Query: 5 MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHK 64
MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEEN +PIIQEASCTGCGICVHK
Sbjct: 1 MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENNRPIIQEASCTGCGICVHK 60
Query: 65 CPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILA 124
CPF AISIVNLPEQL+EDCVHRYGVNAFVLYRLP+VKDGMVVGIVGPNGTGKTTAVKILA
Sbjct: 61 CPFKAISIVNLPEQLEEDCVHRYGVNAFVLYRLPVVKDGMVVGIVGPNGTGKTTAVKILA 120
Query: 125 GQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE 184
GQLIPNLC DNDSWD+VI+AFRG+ELQNYFE+LKNGEI+PVVKPQYVDLLPKAVKGKV E
Sbjct: 121 GQLIPNLCCDNDSWDDVIKAFRGSELQNYFEKLKNGEIKPVVKPQYVDLLPKAVKGKVGE 180
Query: 185 LLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSY 244
LLKKVDE GKFEE+VK LELE VL+RE+ QLSGGELQRVAIAAA+LRKAHFYFFDEPSSY
Sbjct: 181 LLKKVDETGKFEEIVKVLELEKVLEREIDQLSGGELQRVAIAAAILRKAHFYFFDEPSSY 240
Query: 245 LDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTR 304
LDIRQRL VARVIRRLA+EGKAVLVVEHDLAVLDYLSD++H+VYGEPGVYGIFS+PKGTR
Sbjct: 241 LDIRQRLNVARVIRRLADEGKAVLVVEHDLAVLDYLSDIVHIVYGEPGVYGIFSQPKGTR 300
Query: 305 NGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGE 364
NGINEFLQGYLKDENVRFRPYEI+FTKLSERV+VERETLVEYPRLVKDYGSFKLEVEPGE
Sbjct: 301 NGINEFLQGYLKDENVRFRPYEIKFTKLSERVEVERETLVEYPRLVKDYGSFKLEVEPGE 360
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELL 424
IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVY+LL
Sbjct: 361 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYDLL 420
Query: 425 SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEP 484
SKID+SKLNSNFYKTELLKPLGIIDLYD+NV +LSGGELQRVAIAATLLRDADIYLLDEP
Sbjct: 421 SKIDASKLNSNFYKTELLKPLGIIDLYDKNVNELSGGELQRVAIAATLLRDADIYLLDEP 480
Query: 485 SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPP 544
SAYLDVEQRLA SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEP ++G+ALPP
Sbjct: 481 SAYLDVEQRLATSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPSKYGKALPP 540
Query: 545 MGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 592
MGMREGMNRFLASVGITFRRDPD+GRPRANKEGSVKDREQK +GEYYY
Sbjct: 541 MGMREGMNRFLASVGITFRRDPDTGRPRANKEGSVKDREQKEKGEYYY 588
>sp|Q58129|Y719_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN MJ0719
>gi|2127731|pir||G64389 ABC transporter ATP-binding
protein - Methanococcus jannaschii
>gi|1591435|gb|AAB98713.1| (U67518) RNase L inhibitor
[Methanococcus jannaschii]
Length = 600
Score = 688 bits (1755), Expect = 0.0
Identities = 356/593 (60%), Positives = 438/593 (73%), Gaps = 13/593 (2%)
Query: 5 MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHK 64
MR+A+IDYD+C P KC C + CP RMG + I IDE KP+I E C+GCGICV +
Sbjct: 13 MRLAIIDYDRCQPKKCS-MECMKYCPGVRMGEKTIEIDENTGKPVISEVLCSGCGICVKR 71
Query: 65 CPFNAISIVNLPEQLDED-CVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKIL 123
CPF AISI+ LPE+L ED VH YG N F L+ L I +DG VVGI+G NG GK+T ++IL
Sbjct: 72 CPFKAISIIGLPEELSEDKIVHSYGQNRFKLFGLVIPRDG-VVGIIGQNGIGKSTVLRIL 130
Query: 124 AGQLIPNLCEDND--SWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK 181
AG+LIPNL + + ++D+VI+ FRG ELQ YFE+LKN ++ + K QYVD+LPK VKGK
Sbjct: 131 AGELIPNLGKHDKEPNYDDVIKYFRGTELQEYFEKLKNKGVKAIHKVQYVDILPKVVKGK 190
Query: 182 VRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEP 241
V +LLKKVDE GKF+EVV++LEL+N+LDREL QLSGGELQRVAIAAA LR YFFDEP
Sbjct: 191 VGDLLKKVDEKGKFDEVVEKLELKNILDRELSQLSGGELQRVAIAAAYLRNGDIYFFDEP 250
Query: 242 SSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPK 301
SS+LDIRQR AR+IR L V+VVEHDL VLDYLSD IH++YG P YGI S PK
Sbjct: 251 SSWLDIRQRFNAARLIREL----NKVVVVEHDLIVLDYLSDYIHIMYGVPSAYGIVSMPK 306
Query: 302 GTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVE 361
R GINE+L G L++EN+RFR I F K + R L+ Y + K G FKLEV
Sbjct: 307 SVRVGINEYLYGELREENIRFRKEPIIFEKRAVIDFKNRPILLSYSSMKKTLGDFKLEVS 366
Query: 362 PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV--EWDLTVAYKPQYIKAEYEGT 419
G I KGEVIGI+GPNGIGKTTFVK+LAGV +P EG+V E D+ V+YKPQYI +Y+GT
Sbjct: 367 GGTIYKGEVIGILGPNGIGKTTFVKLLAGVIKPDEGEVIKEGDIKVSYKPQYITPDYDGT 426
Query: 420 VYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIY 479
V +LLS I + +++++YK+E++ PL + L DR V +LSGGELQRVAIAA L RDADIY
Sbjct: 427 VEDLLSSI--TNIHTSYYKSEIINPLQLEKLLDREVRELSGGELQRVAIAACLSRDADIY 484
Query: 480 LLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 539
LLDEPSA+LDVEQRL VS+ IR + ++ E VV+HD+L DY+SDR IVF GEPG+ G
Sbjct: 485 LLDEPSAFLDVEQRLRVSKVIRRIADEKEAGMFVVDHDILFQDYISDRFIVFSGEPGKFG 544
Query: 540 RALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 592
PM R+G N+FL + ITFRRDP++GRPRANKEGS +D QK +GEYYY
Sbjct: 545 VGSSPMNKRDGANKFLKEMQITFRRDPETGRPRANKEGSQRDIMQKEKGEYYY 597
>gi|11497625 RNase L inhibitor [Archaeoglobus fulgidus] >gi|7445546|pir||D69250
RNase L inhibitor homolog - Archaeoglobus fulgidus
>gi|2650646|gb|AAB91222.1| (AE001106) RNase L inhibitor
[Archaeoglobus fulgidus]
Length = 586
Score = 650 bits (1658), Expect = 0.0
Identities = 330/588 (56%), Positives = 418/588 (70%), Gaps = 6/588 (1%)
Query: 5 MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHK 64
+RIAV+D ++C P KCG C + CP R G E + I++ K +I E C GCGICV K
Sbjct: 3 LRIAVVDRERCQPKKCGQE-CVKYCPRVRTGDETVKIED---KAVISENLCVGCGICVKK 58
Query: 65 CPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILA 124
CP +AI IV LPE+L+ VHRYG N FVLY LP+ + G VVGI+GPNGTGK+TA+KIL+
Sbjct: 59 CPMHAIWIVGLPEELEGREVHRYGKNGFVLYNLPVPRKGYVVGILGPNGTGKSTAIKILS 118
Query: 125 GQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE 184
GQL PNL ++ SW+ + F G EL +Y + +K G IR KPQY++ +PK GK E
Sbjct: 119 GQLKPNLGKEEASWEEIFDRFAGTELLDYLKGIKEGAIRVSQKPQYIEAIPKVYSGKAIE 178
Query: 185 LLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSY 244
LLK+VDE G + VV++L L + R++ LSGGELQR+AIAA +LR A FYFFDE +SY
Sbjct: 179 LLKRVDERGMLDAVVEKLGLAEAIKRDVKDLSGGELQRLAIAACILRDADFYFFDEVTSY 238
Query: 245 LDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTR 304
LDI QR+ VA VIR LA E K V++VEHDLA+LD L+D +H+ YG PGV+G+ + KG R
Sbjct: 239 LDIYQRIAVAGVIRELAAE-KTVMIVEHDLAILDMLADFVHITYGTPGVFGVVTNAKGAR 297
Query: 305 NGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGE 364
GIN++L+GYL +EN+R R I F R V LVEYP K Y F+LEVE GE
Sbjct: 298 VGINQYLRGYLAEENIRIRDKPIEFEVFQPRESVGENILVEYPSFTKSYEGFRLEVEGGE 357
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELL 424
I +GEV+G+VG N GK+TFVK+LAGV E E KVE D+ V+YKPQY+KA+ V L
Sbjct: 358 IYQGEVLGVVGSNATGKSTFVKVLAGVIEDDEKKVELDVKVSYKPQYVKADVNMQVGMFL 417
Query: 425 SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEP 484
+I + ++S++YKTE LKPL + +L DR ++DLSGGELQRVAI A LLR+AD+YLLDEP
Sbjct: 418 RRI-NPMIDSSYYKTEFLKPLMLENLMDRYLDDLSGGELQRVAIVACLLREADLYLLDEP 476
Query: 485 SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPP 544
SA+LDVEQR +R IR K+ LVV+HD+ +ID VSDRL+VFEG+PG+HG A P
Sbjct: 477 SAHLDVEQRTEAARVIRRFALNTGKSVLVVDHDIYLIDMVSDRLLVFEGQPGKHGIARRP 536
Query: 545 MGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 592
GMREGMN FL+ +GITFRRD ++ RPR NK S DREQKA GEYYY
Sbjct: 537 RGMREGMNLFLSKLGITFRRDEETKRPRVNKPDSRLDREQKAAGEYYY 584
>pir||F69093 RNase L inhibitor - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2622826|gb|AAB86167.1| (AE000927) RNase L
inhibitor [Methanobacterium thermoautotrophicum]
Length = 623
Score = 645 bits (1646), Expect = 0.0
Identities = 311/594 (52%), Positives = 426/594 (71%), Gaps = 6/594 (1%)
Query: 1 MVRKMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGI 60
+++ RI+++D+D+C P KC +++C CP RM + I IDE+ KPII E C+GCGI
Sbjct: 30 VIKLTRISILDHDRCQPKKC-NYVCIEYCPGVRMDEDTITIDEKTKKPIISEELCSGCGI 88
Query: 61 CVHKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAV 120
C +CPF AIS++NLPE L E+ VHRYG N F L+ +P V G VVG++GPNG GK+T V
Sbjct: 89 CTKRCPFKAISVINLPEAL-ENPVHRYGQNQFELFGIPAVTSGDVVGLIGPNGIGKSTIV 147
Query: 121 KILAGQLIPNL--CEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAV 178
+IL+G+L PNL +D WD +I FRG++LQNYF+RL GEI V KPQ VD +P+ V
Sbjct: 148 RILSGELRPNLGDFQDPPGWDEIINHFRGSQLQNYFQRLSKGEISVVHKPQMVDRIPRYV 207
Query: 179 KGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFF 238
KGKV +LL +D + +EV++ LE+ ++ RE+ LSGGELQ VAIAAA LR+A FY+F
Sbjct: 208 KGKVEDLLTGIDS-DRTDEVIETLEIREIMGREISNLSGGELQSVAIAAAALREADFYYF 266
Query: 239 DEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFS 298
DEP+S+LD+RQRL +VIR LA GK+V+V+EHD+A LD +SD +H++YG+PG YG+ S
Sbjct: 267 DEPTSWLDVRQRLNAVKVIRSLAEAGKSVMVIEHDMAALDAMSDYVHILYGKPGAYGVVS 326
Query: 299 KPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKL 358
+G R GIN +++G+L++ENVRFR +EI F RV + L EY L + Y FKL
Sbjct: 327 NRRGVRVGINTYIRGFLREENVRFRKHEIEFKVKPPRVGEAGDILAEYTALSRAYPEFKL 386
Query: 359 EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG 418
+V+ G I EVI GPNGIGKTTF K+LAGVE+P EGKV+ + ++YKPQY+ ++Y G
Sbjct: 387 DVDEGTIYLNEVITAFGPNGIGKTTFAKILAGVEKPDEGKVKKKIKISYKPQYLSSDYTG 446
Query: 419 TVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI 478
TV E L ++ SN +K+E+++P + ++ D+ V LSGGELQR+A+A L R+AD+
Sbjct: 447 TVEEFL-YANAPSYGSNLFKSEIMRPFNLEEILDKPVSGLSGGELQRLAVAVALSREADL 505
Query: 479 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRH 538
Y+LDEP+A+LDVEQRL ++AIR ++E + +A++++HD++ IDYVSDR +VF G PG
Sbjct: 506 YVLDEPTAFLDVEQRLMAAKAIRRIIEGSNSSAMIIDHDIIFIDYVSDRAMVFSGMPGVE 565
Query: 539 GRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 592
G A P +R+ MN FL VGITFRRD ++ RPR NK GS DREQK GEYYY
Sbjct: 566 GHASAPTELRDAMNAFLGEVGITFRRDKETRRPRVNKPGSFLDREQKELGEYYY 619
>gb|AAG20650.1| (AE005134) RNase L inhibitor homolog; Rli [Halobacterium sp. NRC-1]
Length = 610
Score = 612 bits (1561), Expect = e-174
Identities = 310/605 (51%), Positives = 414/605 (68%), Gaps = 21/605 (3%)
Query: 7 IAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIII------DEENYKPIIQEASCTG--C 58
IAV+D D+C PD+C ++ C CP NR G E I + D + + I E C G C
Sbjct: 6 IAVVDLDRCQPDRC-NYECSNYCPPNRTGKECITLRGEDAGDGDPDQVHISEEICLGESC 64
Query: 59 GICVHKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTT 118
GICV KCPF+AI I+NLP++LD+ HRYG N+F LY LP+ + G V G++GPNG GK+T
Sbjct: 65 GICVEKCPFDAIEIINLPQELDDQPTHRYGENSFSLYGLPVPESGKVTGLLGPNGIGKST 124
Query: 119 AVKILAGQLIPNLC--EDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPK 176
AV +LAG++ PNL E WD V+ +RG ELQ+Y +++G++ KPQYVD +P
Sbjct: 125 AVDLLAGEVTPNLGRHESPPDWDEVVDEYRGTELQDYLAAVRDGDVDVAKKPQYVDEIPA 184
Query: 177 AVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFY 236
G R+LL+ DE G +++V L + V+D+ + LSGGELQRVA+AA L R A FY
Sbjct: 185 QFDGNTRQLLEATDERGVLDDLVDRLSIRPVMDQAIDSLSGGELQRVALAATLARDADFY 244
Query: 237 FFDEPSSYLDIRQRLKVARVIRRLANEG-KAVLVVEHDLAVLDYLSDVIHVVYGEPGVYG 295
F DE + YLDI QR+ AR++R LA + KAVLVVEHDLAVLD L+D IHV YGEP VYG
Sbjct: 245 FVDELTPYLDIGQRVTAARLVRELAEDADKAVLVVEHDLAVLDMLADSIHVAYGEPSVYG 304
Query: 296 IFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGS 355
+ + PK RNGINE+L+GYL++EN+R RP I F + + R R+TLV YP + K YG
Sbjct: 305 VVTPPKSVRNGINEYLRGYLENENMRVRPEAIEFEEHAPRSASRRDTLVSYPDMTKSYGD 364
Query: 356 --FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE------GKVEWDLTVAY 407
F L VE G+I + EV+G+VGPNGIGK+TF ++LAG EP+ ++ L +AY
Sbjct: 365 GEFTLSVEGGDINRNEVLGVVGPNGIGKSTFAQLLAGGLEPSSVGGEAGAALDVGLDIAY 424
Query: 408 KPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVA 467
KPQY++A+ + V LS + + + +++++TE+ PL + + ++ + DLSGGE QRVA
Sbjct: 425 KPQYVEADQQMRVDAFLSSV-TDDVGTSYWQTEIADPLQLDPIMEQRLPDLSGGERQRVA 483
Query: 468 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 527
IAATL +DAD+YLLDEPSA+LDVEQR+ +RAIR E NE T +V++HD+ MID VSDR
Sbjct: 484 IAATLSKDADLYLLDEPSAHLDVEQRVLATRAIRRFAENNESTVMVIDHDIYMIDLVSDR 543
Query: 528 LIVFEGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKAR 587
L+VF+GEP HG+A PP MR GMN FLA++ +TFRRD GRPR NK S D++QK
Sbjct: 544 LMVFDGEPAEHGQASPPQAMRSGMNEFLANLDVTFRRDERLGRPRINKPDSQLDKQQKRD 603
Query: 588 GEYYY 592
GEYYY
Sbjct: 604 GEYYY 608
>emb|CAC12610.1| (AL445067) probable RNase L inhibitor [Thermoplasma acidophilum]
Length = 589
Score = 594 bits (1514), Expect = e-168
Identities = 293/591 (49%), Positives = 399/591 (66%), Gaps = 4/591 (0%)
Query: 5 MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHK 64
M +AV+D DKC+P KC H C+ CP R AI + + +P+I E C GCGIC+ +
Sbjct: 1 MHVAVLDRDKCHPKKC-HHECQYYCPPVRNHVMAIDFPDPDGQPLISETLCIGCGICIRR 59
Query: 65 CPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILA 124
CPF AI IV LP++L+++ +HRYGVN F +Y +P + G V I+G NG GKTT + IL+
Sbjct: 60 CPFGAIKIVTLPDELNKEVLHRYGVNGFRIYSIPTISPGRVSAILGQNGLGKTTTLNILS 119
Query: 125 GQLIPNL--CEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKV 182
G +PNL E S + VI F E+ YF L R V+K QYVD +PK VKG +
Sbjct: 120 GITVPNLGSYERPPSKEEVIEKFARTEMGAYFRGLYEQNKRAVLKNQYVDYIPKVVKGTI 179
Query: 183 RELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPS 242
E+LKK DE G++ +VV +L LEN +++ + + SGGELQR+AI L + A Y FDE +
Sbjct: 180 GEVLKKNDETGRYSDVVTQLNLENSVNKNVSECSGGELQRLAIGTVLEKDADIYLFDEMT 239
Query: 243 SYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKG 302
SYLDI +RL +R+++ LA + K V+VVEHDLA+LD+L+D +++VYG+PGVYGIFS+P
Sbjct: 240 SYLDINERLNASRIVQDLARK-KTVIVVEHDLAILDWLADSVNIVYGDPGVYGIFSEPLS 298
Query: 303 TRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEP 362
T IN +L G+LK+ENVR R Y I F + + R D + L+ + L K G F LEV P
Sbjct: 299 TNRAINAYLSGFLKEENVRIRSYPIEFEEKTSRRDKFTQDLISWTELKKTLGDFALEVSP 358
Query: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 422
G+I + E++GI+G N +GK+TF+ MLAGV P G + ++ V+YKPQYI ++G+V +
Sbjct: 359 GKIHRSEIVGILGKNALGKSTFIMMLAGVLNPDSGSISQNVRVSYKPQYISTSFDGSVSD 418
Query: 423 LLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 482
L+ + + +F K E+ PL I D+ + V+ LSGGELQR++IA TL RDADIYLLD
Sbjct: 419 LIRTSLGERSDDSFVKNEIFHPLSIEDIMENPVDGLSGGELQRLSIAITLARDADIYLLD 478
Query: 483 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRAL 542
EPSA+LD R+ V++ IR +ME +KTA+VV+HD+ +ID +SD LIVF G PG HG +
Sbjct: 479 EPSAHLDSSFRMVVAKVIRRVMENTKKTAMVVDHDIYLIDLISDSLIVFSGVPGSHGHSE 538
Query: 543 PPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYYA 593
PM MREGMNRFL VG+TFRRD +S RPR NKE S DR QK + YYY+
Sbjct: 539 GPMDMREGMNRFLKIVGVTFRRDQNSRRPRINKENSSLDRMQKEQNNYYYS 589
>pir||H72712 probable RNase L inhibitor APE1119 - Aeropyrum pernix (strain K1)
>gi|5104789|dbj|BAA80104.1| (AP000060) 604aa long
hypothetical RNase L inhibitor [Aeropyrum pernix]
Length = 604
Score = 593 bits (1512), Expect = e-168
Identities = 312/603 (51%), Positives = 411/603 (67%), Gaps = 21/603 (3%)
Query: 9 VIDYDKCNPDKCGHFLCERVCPVNRMG-GEAIIIDEENY-KPIIQEASCTGCGICVHKCP 66
+IDYD C P KC + C VCPVN+ G G AI D + KP+I E +C GC +CV CP
Sbjct: 1 MIDYDSCKPKKCS-YECIAVCPVNKSGRGVAIDADMASRGKPVIYEDACIGCALCVKACP 59
Query: 67 FNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQ 126
F+AI IVNLP +L+E+ VHRYGVN F L+RLPI ++G VVG++G NGTGKTTA++ILAG+
Sbjct: 60 FDAIYIVNLPMELEEEAVHRYGVNGFKLFRLPIPREGQVVGLLGRNGTGKTTALRILAGE 119
Query: 127 LIPNLCE---DNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR 183
L PNL WD +++ FRG+ELQ YF +L +G++R K QYV+L+P+ +KG+VR
Sbjct: 120 LKPNLGRVEGGEPEWDEILKRFRGSELQTYFRKLVDGKLRVAHKIQYVELVPRRLKGRVR 179
Query: 184 ELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSS 243
+LLK+ DE G E+ +++ L+ V DR++ QLSGGELQ++ I A L R A+ Y FDEPSS
Sbjct: 180 DLLKRADERGVALELAEQVGLDKVFDRDVRQLSGGELQKMLIVAVLSRDANVYIFDEPSS 239
Query: 244 YLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGT 303
YLDIR+R+++AR+I A G V+VVEHDLAVLDY+SD++H++YGEPG YGI SKP T
Sbjct: 240 YLDIRERMRMARLIAGAARPGAYVMVVEHDLAVLDYVSDLVHILYGEPGAYGIVSKPYST 299
Query: 304 RNGINEFLQGYLKDENVRFRPYEIRFTKLSERV---------DVERETLVEYPRLVKDYG 354
R GIN FLQGYL EN+R R I F K + R +V + L
Sbjct: 300 REGINVFLQGYLPAENIRLRKEPILFRKPAPEAQPAAPGGGRQASRRRIVGWTGLRVALD 359
Query: 355 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV---EWDLTVAYKPQY 411
F L G + GEVIG+ GPNGIGKTTFV+ LAG +P EG V DL V+YKPQY
Sbjct: 360 GFTLTSGEGALYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVEDLRVSYKPQY 419
Query: 412 IKAEY--EGTVYELLSKIDSSKL-NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAI 468
I E + TV ++L + + L ++ EL+K + + L +R V LSGGELQ+VA+
Sbjct: 420 ISPESLPDATVEQVLKAANPAILAPGSWLNLELVKRMRLDKLLERRVRTLSGGELQKVAV 479
Query: 469 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 528
AA L R+AD+YLLDEPSAYLDVE+R+ V+RAIR ++E E ALVVEHD++++DYVSDR+
Sbjct: 480 AAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALVVEHDLMILDYVSDRI 539
Query: 529 IVFEGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARG 588
++ GEPG G P ++EGMN L ++G+T R+D +GRPR NKEGS DR Q+AR
Sbjct: 540 MLVTGEPGVRGHVDDPRPVKEGMNLLLQNLGVTVRKDEQTGRPRLNKEGSYLDRMQRARK 599
Query: 589 EYY 591
YY
Sbjct: 600 LYY 602
>gb|AAK40626.1| RNase L inhibitor [Sulfolobus solfataricus]
Length = 600
Score = 573 bits (1461), Expect = e-162
Identities = 291/596 (48%), Positives = 415/596 (68%), Gaps = 12/596 (2%)
Query: 5 MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDE-ENYKPIIQEASCTGCGICVH 63
MR+AVI+YD C PDKC + C CPV+R GG+AI + E KP+I E +C GCGICV
Sbjct: 1 MRVAVINYDFCKPDKC-NLECINFCPVDRSGGKAIELSEIVKGKPVIYEETCIGCGICVK 59
Query: 64 KCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKIL 123
KCP+ AISIVNLP++L+ + +HRY VN F L+ LP K+ ++G++G NG GKTT +KIL
Sbjct: 60 KCPYEAISIVNLPDELEGEVIHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKIL 119
Query: 124 AGQLIPNLCEDNDSW--DNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK 181
AG++IPN + N D V++ FRG E+ NYF+ L + E++ V K QYV+ K +KG
Sbjct: 120 AGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGT 179
Query: 182 VRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEP 241
V E+L K+DE GK +EV + L + N+ +++ + LSGG LQR+ +AA+LLR+A Y FDEP
Sbjct: 180 VNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDEP 239
Query: 242 SSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPK 301
SSYLD+R+R+ +A+ IR L + K V+VV+HDL VLDYL+D+IH++YGE VYG SK
Sbjct: 240 SSYLDVRERMNMAKAIRELL-KNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSY 298
Query: 302 GTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVER----ETLVEYPRLVKDYGSFK 357
R GIN FL+GYL EN++ RP EI+F L E D++ +T +++ +++K G F+
Sbjct: 299 AARVGINNFLKGYLPAENMKIRPDEIKFM-LKEVSDLDLSKDLKTKMKWTKIIKKLGDFQ 357
Query: 358 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTV-AYKPQYIKAEY 416
L V+ GE ++GE+IGI+GPNGIGKTTF ++L G EG V + + +YKPQ I Y
Sbjct: 358 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNY 417
Query: 417 EGTVYELLSKIDSSKLN-SNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRD 475
+GTV + L L+ S+++ E+ K L + L + NV DLSGGELQ++ IAATL ++
Sbjct: 418 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKE 477
Query: 476 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEP 535
AD+Y+LDEPS+YLDVE+R V++AI+ + + + +++HD+ + DY++DR+IVF+GEP
Sbjct: 478 ADLYVLDEPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEP 537
Query: 536 GRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYY 591
+ G A P+ ++ GMN FL + +TFRRD ++GRPR NK GS DR QK RG+YY
Sbjct: 538 EKAGLATSPVTLKTGMNEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQKERGDYY 593
>pir||T26761 hypothetical protein Y39E4B.1 - Caenorhabditis elegans
>gi|5824775|emb|CAB54424.1| (AL110487) contains
similarity to Pfam domain: PF00005 (ABC transporter),
Score=191.8, E-value=3.5e-54, N=2; PF00037 (4Fe-4S
binding domain), Score=33.6, E-value=1.4e-06, N=1~cDNA
EST EMBL:M89048 comes from this gene~cDNA EST yk204a4.5
comes from this >
Length = 610
Score = 566 bits (1442), Expect = e-160
Identities = 281/591 (47%), Positives = 394/591 (66%), Gaps = 4/591 (0%)
Query: 5 MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHK 64
+RIA+++ D+C P CG C+R CPVNR G + I+++ + I E C GCGICV K
Sbjct: 17 LRIAIVEKDRCKPKNCG-LACKRACPVNRQGKQCIVVEATSTISQISEILCIGCGICVKK 75
Query: 65 CPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILA 124
CP++AI I+NLP L + HRY N+F L+RLP + G V+G+VG NG GK+TA+KILA
Sbjct: 76 CPYDAIKIINLPANLANETTHRYSQNSFKLHRLPTPRCGEVLGLVGTNGIGKSTALKILA 135
Query: 125 GQLIPNL--CEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKV 182
G+ PNL + W +I FRG+ELQNYF R+ ++ V+KPQYVD +P+A KG V
Sbjct: 136 GKQKPNLGNFQKEQEWTTIINHFRGSELQNYFTRILEDTLKCVIKPQYVDQIPRAAKGTV 195
Query: 183 RELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPS 242
+ L + + V+ ++EL +LDRE+ QLSGGELQR AIA ++KA Y FDEPS
Sbjct: 196 EKNLTRKHDNDNLNSVIDQMELRGLLDREIDQLSGGELQRFAIAMCCVQKADVYMFDEPS 255
Query: 243 SYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKG 302
SYLD++QRLK A +IR ++ V+VVEHDLAVLDYLSD I +YG PGVYG+ + P G
Sbjct: 256 SYLDVKQRLKAAAIIRERVSDTNYVVVVEHDLAVLDYLSDFICCLYGVPGVYGVVTLPSG 315
Query: 303 TRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEP 362
R GIN FL+G+++ EN+RFR ++ F ++ D++R ++YP + K G+F L+VE
Sbjct: 316 VREGINMFLEGFIRTENMRFRESKLSFKTSEQQEDIKRTGNIKYPSMSKTLGNFHLDVEA 375
Query: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-DLTVAYKPQYIKAEYEGTVY 421
G+ E+I ++G NG GKTT +KM+AG +P + E ++++YKPQ I + E TV
Sbjct: 376 GDFSDSEIIVMLGENGTGKTTMIKMMAGSLKPEDENTELPHVSISYKPQKISPKSETTVR 435
Query: 422 ELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLL 481
+L + +KT+++ PL + L DRNV++LSGGELQRVA+A L + A +YL+
Sbjct: 436 FMLHDKIQNMYEHPQFKTDVMNPLMMEQLLDRNVKELSGGELQRVALALCLGKTASLYLI 495
Query: 482 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRA 541
DEPSAYLD EQRL ++ I+ + +KTA VVEHD +M Y++DR++VFEG+P A
Sbjct: 496 DEPSAYLDSEQRLHAAKVIKRFIMHAKKTAFVVEHDFIMATYLADRVVVFEGQPSVKCTA 555
Query: 542 LPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 592
P + EGMNRFL + ITFRRD ++ RPR NK SVKD +QK G++++
Sbjct: 556 CKPQSLLEGMNRFLKMLDITFRRDQETYRPRINKLDSVKDVDQKKSGQFFF 606
>emb|CAC14519.1| (AL446004) bacterial-type ABC transport ATP-binding subunit? or
RNAse L inhibitor [Leishmania major]
Length = 659
Score = 550 bits (1401), Expect = e-155
Identities = 282/596 (47%), Positives = 397/596 (66%), Gaps = 9/596 (1%)
Query: 3 RKMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICV 62
R RIAV++ D+C P KC + C + CPV G I + ++ I E C GC +CV
Sbjct: 12 RLTRIAVVNADRCKPRKC-NLECYKCCPVVLQGKLCIEVSHQSTISKISEELCIGCALCV 70
Query: 63 HKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKI 122
KCP++AI I+NLP L+ D VHRYG N+F L+RLP+ + G V+G+VG NGTGK+TA+ +
Sbjct: 71 KKCPYDAIRIINLPSNLERDTVHRYGPNSFKLHRLPLPRPGQVLGLVGANGTGKSTALSV 130
Query: 123 LAGQLIPNLCE--DNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG 180
L G++ PNL + WD +++ FRG+E Q YF+ L + ++R ++KPQYVD +PK G
Sbjct: 131 LKGRIRPNLGRYMNEPGWDEILKYFRGSEHQAYFQHLLDDKMRVLLKPQYVDKVPKTNNG 190
Query: 181 KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE 240
V LL K DE + ++ L+L+NV DR L +LSGGELQR IAA ++ A Y +DE
Sbjct: 191 VVEVLLTKADERSMKDYFMEVLDLKNVADRTLDKLSGGELQRFTIAALCVQNAQVYMYDE 250
Query: 241 PSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP 300
PSSYLD+RQRL A+VIR + E V+VVEHDL+V+DY+SD + V+YG PG+YG+ + P
Sbjct: 251 PSSYLDVRQRLTAAQVIRSMLTETNYVIVVEHDLSVVDYMSDFVCVLYGVPGIYGVVTMP 310
Query: 301 KGTRNGINEFLQGYLKDENVRFRPYEIRF---TKLSERVDVERETLVEYPRLVKDYGSFK 357
G R GIN FL G++ EN+RFR + F + E V +R + EYP + K+ GSF
Sbjct: 311 YGVREGINIFLDGFVPTENLRFREEGLTFHIADDIEEGVS-KRRAMNEYPAMSKNLGSFS 369
Query: 358 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE 417
L V+ G E++ ++G NG GKTTF++MLAG +P L+++YKPQ I +++
Sbjct: 370 LSVDAGTFSDSEIVVLLGENGCGKTTFIRMLAGHVKPDNDVEVPKLSISYKPQKIAPKFQ 429
Query: 418 GTVYELL-SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDA 476
GTV +LL +KI + F +T++LKPL I +L D+ V++LSGG+LQRV + L A
Sbjct: 430 GTVRDLLQTKIYEMYCHPQF-QTDVLKPLTIEELLDQEVQNLSGGQLQRVGLCIALGTPA 488
Query: 477 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPG 536
+IYL+DEPSAYLD +QR+ SR I+ + +++TA +VEHD +M Y++D++IV++G P
Sbjct: 489 NIYLIDEPSAYLDSDQRIIASRVIKRFILNSKRTAFIVEHDFIMATYLADKVIVYDGTPA 548
Query: 537 RHGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 592
+ A P G+ EGMNRFL S+ ITFRRDP + RPR NK SVKDR+QKA G Y+Y
Sbjct: 549 VNCTARTPCGLLEGMNRFLKSLNITFRRDPTNFRPRINKLDSVKDRDQKASGNYFY 604
>dbj|BAB01911.1| (AP001307) RNase L inhibitor [Arabidopsis thaliana]
Length = 603
Score = 548 bits (1397), Expect = e-155
Identities = 287/601 (47%), Positives = 393/601 (64%), Gaps = 15/601 (2%)
Query: 3 RKMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICV 62
R RIA++ D+C P KC C++ CPV + G I + + I E C GCGICV
Sbjct: 4 RLTRIAIVSEDRCKPKKCRQE-CKKSCPVVKTGKLCIEVGSTSKSAFISEELCIGCGICV 62
Query: 63 HKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKI 122
KCPF AI I+NLP+ L +D HRYG N F L+RLPI + G V+G+VG NG GK+TA+KI
Sbjct: 63 KKCPFEAIQIINLPKDLAKDTTHRYGANGFKLHRLPIPRPGQVLGLVGTNGIGKSTALKI 122
Query: 123 LAGQLIPNLCEDND--SWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG 180
LAG+L PNL N W+ ++ FRG+ELQ+YF R+ ++ +KPQ+VD + + V+G
Sbjct: 123 LAGKLKPNLGRFNTPPDWEEILTHFRGSELQSYFIRVVEENLKTAIKPQHVDYIKEVVRG 182
Query: 181 KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE 240
+ ++L+K+DE G EE+ ++EL VL+RE Q+SGGELQR AIAA ++KA Y FDE
Sbjct: 183 NLGKMLEKLDERGLMEEICADMELNQVLEREARQVSGGELQRFAIAAVFVKKADIYMFDE 242
Query: 241 PSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP 300
PSSYLD+RQRLK A+VIR L V+VVEHDL+VLDYLSD + +YG+PG YG+ + P
Sbjct: 243 PSSYLDVRQRLKAAQVIRSLLRHDSYVIVVEHDLSVLDYLSDFVCCLYGKPGAYGVVTLP 302
Query: 301 KGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERV-----DVERETLVEYPRLVKDYGS 355
R GIN FL G++ EN+RFR + F ++SE +V+ +YP + K G
Sbjct: 303 FSVREGINVFLAGFIPTENLRFRDESLTF-RVSETTQENDGEVKSYARYKYPNMTKQLGD 361
Query: 356 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV---EEPTEGKVEWDLTVAYKPQYI 412
FKLEV GE ++I ++G NG GKTTF++MLAG EE + ++ + V+YKPQ
Sbjct: 362 FKLEVMEGEFTDSQIIVMLGENGTGKTTFIRMLAGAFPREEGVQSEIP-EFNVSYKPQGN 420
Query: 413 KAEYEGTVYELL-SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 471
++ E TV +LL KI + + F +++++PL I L D+ V+ LSGGE QRVAI
Sbjct: 421 DSKRECTVRQLLHDKIRDACAHPQF-MSDVIRPLQIEQLMDQVVKTLSGGEKQRVAITLC 479
Query: 472 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 531
L + ADIYL+DEPSA+LD EQR+ S+ I+ + +KTA +VEHD +M Y++DR+IV+
Sbjct: 480 LGKPADIYLIDEPSAHLDSEQRITASKVIKRFILHAKKTAFIVEHDFIMATYLADRVIVY 539
Query: 532 EGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYY 591
EG+P A P + GMN FL+ + ITFRRDP + RPR NK S+KD+EQK G YY
Sbjct: 540 EGQPAVKCIAHSPQSLLSGMNHFLSHLNITFRRDPTNFRPRINKLESIKDKEQKTAGSYY 599
Query: 592 Y 592
Y
Sbjct: 600 Y 600
>gi|6320296 putative member of nontransporter group of ATP-binding cassette
(ABC) superfamily; Rli1p [Saccharomyces cerevisiae]
>gi|2132474|pir||S58091 probable membrane protein
YDR091c - yeast (Saccharomyces cerevisiae)
>gi|914875|emb|CAA90450.1| (Z50111) unknown
[Saccharomyces cerevisiae]
Length = 608
Score = 548 bits (1397), Expect = e-155
Identities = 288/601 (47%), Positives = 390/601 (63%), Gaps = 13/601 (2%)
Query: 3 RKMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICV 62
+ RIA++ DKC P KC C+R CPV + G I + + I E C GCGICV
Sbjct: 4 KNSRIAIVSADKCKPKKCRQE-CKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGICV 62
Query: 63 HKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKI 122
KCPF+AI I+NLP L+ HRY N+F L+RLP + G V+G+VG NG GK+TA+KI
Sbjct: 63 KKCPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKI 122
Query: 123 LAGQLIPNL--CEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG 180
LAG+ PNL +D W +I+ FRG+ELQNYF ++ +I+ ++KPQYVD +P+A+KG
Sbjct: 123 LAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKG 182
Query: 181 ---KVRELLKKVDEVGK--FEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHF 235
KV ELLK E + +K L+LENVL R++ +LSGGELQR AI + +++A
Sbjct: 183 PVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADV 242
Query: 236 YFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYG 295
Y FDEPSSYLD++QRL A++IR L K V+ VEHDL+VLDYLSD + ++YG P VYG
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYG 302
Query: 296 IFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETL---VEYPRLVKD 352
+ + P R GIN FL G++ EN+RFR ++F D++ ++ YP L K
Sbjct: 303 VVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKT 362
Query: 353 YGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYI 412
G F L VE GE E++ ++G NG GKTT +K+LAG +P EG+ L V+ KPQ I
Sbjct: 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKI 422
Query: 413 KAEYEGTVYELL-SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 471
++ GTV +L KI LN F +T+++KPL I D+ D+ V+ LSGGELQRVAI
Sbjct: 423 APKFPGTVRQLFFKKIRGQFLNPQF-QTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLA 481
Query: 472 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 531
L ADIYL+DEPSAYLD EQR+ S+ IR + N+KTA +VEHD +M Y++D++IVF
Sbjct: 482 LGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVF 541
Query: 532 EGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYY 591
EG P ++ A P + G NRFL ++ +TFRRDP+S RPR NK S D+EQK+ G Y+
Sbjct: 542 EGIPSKNAHARAPESLLTGCNRFLKNLNVTFRRDPNSFRPRINKLDSQMDKEQKSSGNYF 601
Query: 592 Y 592
+
Sbjct: 602 F 602
>pir||T04442 ABC-type transport protein T18B16.180 - Arabidopsis thaliana
>gi|2828296|emb|CAA16710.1| (AL021687) RNase L
inhibitor-like protein [Arabidopsis thaliana]
>gi|7268716|emb|CAB78923.1| (AL161550) RNase L
inhibitor-like protein [Arabidopsis thaliana]
Length = 600
Score = 547 bits (1394), Expect = e-154
Identities = 283/597 (47%), Positives = 383/597 (63%), Gaps = 10/597 (1%)
Query: 3 RKMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICV 62
R RIA++ D+C P KC C++ CPV + G I + + I E C GCGICV
Sbjct: 4 RLTRIAIVSSDRCKPKKCRQE-CKKSCPVVKTGKLCIEVTVGSKLAFISEELCIGCGICV 62
Query: 63 HKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKI 122
KCPF AI I+NLP L++D HRYG N F L+RLP+ + G V+G+VG NG GK+TA+KI
Sbjct: 63 KKCPFEAIQIINLPRDLEKDTTHRYGANTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKI 122
Query: 123 LAGQLIPNLCEDND--SWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG 180
LAG+L PNL W ++ FRG+ELQNYF R+ ++ ++KPQYVD +P+AVKG
Sbjct: 123 LAGKLKPNLGRFTSPPDWQEILTHFRGSELQNYFTRILEDNLKAIIKPQYVDHIPRAVKG 182
Query: 181 KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE 240
V E+L + DE K E+ +LEL V+DR++ LSGGELQR AIA ++ A Y FDE
Sbjct: 183 NVGEVLDQKDERDKKAELCADLELNQVIDRDVENLSGGELQRFAIAVVAIQNAEIYMFDE 242
Query: 241 PSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP 300
PSSYLD++QRLK A+V+R L V+VVEHDL+VLDYLSD I +YG+PG YG+ + P
Sbjct: 243 PSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLP 302
Query: 301 KGTRNGINEFLQGYLKDENVRFRPYEIRF----TKLSERVDVERETLVEYPRLVKDYGSF 356
R GIN FL G++ EN+RFR + F T +++ +YP + K G+F
Sbjct: 303 FSVREGINIFLAGFVPTENLRFRDESLTFKVAETPQESAEEIQSYARYKYPTMTKTQGNF 362
Query: 357 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEY 416
+L V GE ++I ++G NG GKTTF++ML ++ + V+YKPQ I ++
Sbjct: 363 RLRVSEGEFTDSQIIVMLGENGTGKTTFIRMLVFSSSMIYREIP-EFNVSYKPQKISPKF 421
Query: 417 EGTVYELL-SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRD 475
+ +V LL KI S ++ F ++++KPL I L D+ V +LSGGELQRVA+ L +
Sbjct: 422 QNSVRHLLHQKIRDSYMHPQF-MSDVMKPLQIEQLMDQEVVNLSGGELQRVALTLCLGKP 480
Query: 476 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEP 535
ADIYL+DEPSAYLD EQR+ S+ I+ + +KTA VVEHD +M Y++DR+IV+EG+P
Sbjct: 481 ADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 540
Query: 536 GRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 592
A P + GMN FL+ + ITFRRDP + RPR NK S KDREQK+ G YYY
Sbjct: 541 SIDCTANCPQSLLSGMNLFLSHLNITFRRDPTNFRPRINKLESTKDREQKSAGSYYY 597
>pir||S63672 RNase L inhibitor (clone 8) - human >gi|1587696|prf||2207222A RNase
L inhibitor [Homo sapiens]
Length = 599
Score = 547 bits (1393), Expect = e-154
Identities = 277/591 (46%), Positives = 389/591 (64%), Gaps = 5/591 (0%)
Query: 6 RIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKC 65
RIA++++DKC P KC C++ CPV RMG I + ++ I E C GCGIC+ KC
Sbjct: 7 RIAIVNHDKCKPKKCRQE-CKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGICIKKC 65
Query: 66 PFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG 125
PF A+SIVNLP L+++ HRY NAF L+RLPI + G V+G+VG NG GK+TA+KILAG
Sbjct: 66 PFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAG 125
Query: 126 QLIPNL--CEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR 183
+ PNL +D W ++ FRG+ELQNYF ++ +++ ++KPQYVD +PKA KG V
Sbjct: 126 KQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAAKGTVG 185
Query: 184 ELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSS 243
+L + DE V ++L+L ++ +R + LSGGELQR A A ++KA + FDEPSS
Sbjct: 186 SILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSS 245
Query: 244 YLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGT 303
YLD++QRLK A IR L N + ++VVEHDL+VLDYLSD I +YG P YG+ + P
Sbjct: 246 YLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSV 305
Query: 304 RNGINEFLQGYLKDENVRFRPYEIRF--TKLSERVDVERETLVEYPRLVKDYGSFKLEVE 361
R GIN FL GY+ EN+RFR + F + + +V++ + +YP + K G F+L +
Sbjct: 306 REGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEFELAIV 365
Query: 362 PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVY 421
GE E++ ++G NG GKTTF++MLAG +P EG L V+YKPQ I + G+V
Sbjct: 366 AGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKSTGSVR 425
Query: 422 ELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLL 481
+LL + + T+++KPL I ++ D+ V+ LSGGELQRVA+A L + AD+YL+
Sbjct: 426 QLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPADVYLI 485
Query: 482 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRA 541
DEPSAYLD EQRL +R ++ + +KTA VVEHD +M Y++DR+IVF+G P ++ A
Sbjct: 486 DEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVA 545
Query: 542 LPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 592
P + GMN+FL+ + ITFRRDP++ RPR NK S+KD EQK G Y++
Sbjct: 546 NSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFF 596
>gi|7657518 ATP-binding cassette, subfamily E, member 1; ribonuclease L (2',
5'-oligoisoadenylate synthetase-dependent) inhibitor
[Mus musculus] >gi|7445550|pir||JC6555 ribonuclease L
inhibitor - mouse >gi|3273417|gb|AAC24730.1| (U90446)
RNAse L inhibitor [Mus musculus]
Length = 599
Score = 544 bits (1386), Expect = e-153
Identities = 276/591 (46%), Positives = 388/591 (64%), Gaps = 5/591 (0%)
Query: 6 RIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKC 65
RIA++++DKC P KC C++ CPV RMG I + ++ I E C GCGIC+ KC
Sbjct: 7 RIAIVNHDKCKPKKCRQE-CKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGICIKKC 65
Query: 66 PFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG 125
PF A+SIVNLP L+++ HRY NAF L+RLPI + G V+G+VG NG GK+TA+KILAG
Sbjct: 66 PFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAG 125
Query: 126 QLIPNL--CEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR 183
+ PNL +D W ++ FRG+EL+NYF + +++ ++KPQYVD +PKA KG V
Sbjct: 126 KQKPNLGKYDDPPDWQEILTYFRGSELKNYFTTILEDDLKAIIKPQYVDQIPKAAKGTVG 185
Query: 184 ELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSS 243
+L + DE V ++L+L ++ +R + LSGGELQR A A ++KA + FDEPSS
Sbjct: 186 SILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSS 245
Query: 244 YLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGT 303
YLD++QRLK A IR L N + ++VVEHDL+VLDYLSD I +YG P YG+ + P
Sbjct: 246 YLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSV 305
Query: 304 RNGINEFLQGYLKDENVRFRPYEIRF--TKLSERVDVERETLVEYPRLVKDYGSFKLEVE 361
R GIN FL GY+ EN+RFR + F + + +V++ + +YP + K G F+L +
Sbjct: 306 REGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEFELAIV 365
Query: 362 PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVY 421
GE E++ ++G NG GKTTF++MLAG +P EG L V+YKPQ I + G+V
Sbjct: 366 AGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKSTGSVR 425
Query: 422 ELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLL 481
+LL + + T+++KPL I ++ D+ V+ LSGGELQRVA+A L + AD+YL+
Sbjct: 426 QLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPADVYLI 485
Query: 482 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRA 541
DEPSAYLD EQRL +R ++ + +KTA VVEHD +M Y++DR+IVF+G P ++ A
Sbjct: 486 DEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVA 545
Query: 542 LPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 592
P + GMN+FL+ + ITFRRDP++ RPR NK S+KD EQK G Y++
Sbjct: 546 NSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFF 596
>gb|AAF50342.1| (AE003553) CG5651 gene product [Drosophila melanogaster]
Length = 611
Score = 542 bits (1381), Expect = e-153
Identities = 282/597 (47%), Positives = 394/597 (65%), Gaps = 11/597 (1%)
Query: 3 RKMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICV 62
++ RIA++ DKC P +C C++ CPV RMG I + + + E C GCGICV
Sbjct: 12 KQTRIAIVSDDKCKPKRCRQE-CKKTCPVVRMGKLCIEVTPTSKIASLSEELCIGCGICV 70
Query: 63 HKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKI 122
KCPF AI+I+NLP L++ HRY N+F L+RLPI + G V+G+VG NG GK+TA+KI
Sbjct: 71 KKCPFEAITIINLPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALKI 130
Query: 123 LAGQLIPNLCE--DNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG 180
LAG+ PNL + + W ++ FRG+ELQNYF ++ ++ +VKPQYVD +PKAV+G
Sbjct: 131 LAGKQKPNLGKYANPPDWTEILSYFRGSELQNYFTKILEDNLKALVKPQYVDQIPKAVRG 190
Query: 181 KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE 240
V +LL K DE ++ + L+L ++ DRE+ QLSGGELQR AIA ++ A + FDE
Sbjct: 191 AVGDLLDKKDERELQTKICEMLDLSHIRDREIAQLSGGELQRFAIAMVCIQNADIFMFDE 250
Query: 241 PSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP 300
PSSYLD++QRL A IR L + K ++VVEHDL+VLDYLSD I +YG PG YG+ + P
Sbjct: 251 PSSYLDVKQRLNAALTIRSLLHPTKFIIVVEHDLSVLDYLSDFICCLYGVPGCYGVVTMP 310
Query: 301 KGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERV---DVERETLVEYPRLVKDYGSFK 357
R GIN FL G++ EN+RFR + F K+SE +++R YP +VK G F+
Sbjct: 311 FSVREGINIFLDGFVPTENMRFRTESLTF-KVSESATEEEIKRMNHYVYPAMVKTLGKFE 369
Query: 358 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEY 416
L VE G E++ ++G NG GKTTF++MLAG +P +G+VE L ++YKPQ I ++
Sbjct: 370 LTVEKGHFSDSEILVLLGENGTGKTTFIRMLAGNLQP-DGEVELPMLNISYKPQKISPKF 428
Query: 417 EGTVYELL-SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRD 475
+ V LL KI + ++ F +++KP+ I ++ D+ V++LSGGELQRVA+ L +
Sbjct: 429 QNHVRHLLHDKIRDAYVHPQFI-ADVMKPMKIEEIMDQEVQNLSGGELQRVALVLCLGKP 487
Query: 476 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEP 535
AD+YL+DEPSAYLD EQRL ++ I+ + +KT VVEHD +M Y++DR+IV EG+P
Sbjct: 488 ADVYLIDEPSAYLDSEQRLVAAKVIKRYILHAKKTGFVVEHDFIMATYLADRVIVIEGQP 547
Query: 536 GRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 592
A P + GMNRFL +GITFRRDP++ RPR NK SVKD EQK G++++
Sbjct: 548 SVKTTAFSPQSLLNGMNRFLELLGITFRRDPNNFRPRINKNNSVKDTEQKRSGQFFF 604
>pir||T39452 probable RNASE L inhibitor - fission yeast (Schizosaccharomyces
pombe) >gi|3184109|emb|CAA19324.1| (AL023780) putative
RNASE L inhibitor [Schizosaccharomyces pombe]
Length = 593
Score = 534 bits (1360), Expect = e-150
Identities = 282/595 (47%), Positives = 381/595 (63%), Gaps = 19/595 (3%)
Query: 6 RIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKC 65
RIA++ DKC P KC C R CPV R G I ++ + I E C GCGICV KC
Sbjct: 7 RIAIVSEDKCRPKKCRQE-CRRSCPVVRTGKLCIEVNPTDRIAFISETLCIGCGICVKKC 65
Query: 66 PFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG 125
PF AI+I+NLP L+ + HRY N+F L+RLP + G V+G+VG NG GK+TA+KIL+G
Sbjct: 66 PFGAINIINLPTNLESEVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILSG 125
Query: 126 QLIPNL--CEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG--- 180
++ PNL ++ W V++ FRG+ELQN+F ++ I+ ++KPQYVD +P+A+K
Sbjct: 126 KMKPNLGRYDNPPDWAEVVKYFRGSELQNFFTKVVEDNIKALIKPQYVDHIPRAIKTGDK 185
Query: 181 KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE 240
V L+K FEEV+ +L+N+L+RE+ LSGGELQR AIAA +KA Y FDE
Sbjct: 186 TVSGLIKARANNNNFEEVMDHTDLQNLLNREVGHLSGGELQRFAIAAVATQKADVYMFDE 245
Query: 241 PSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP 300
PSSYLDI+QRLK RVIR L V+VVEHDL+VLDYLSD + V+YG P +YG+ + P
Sbjct: 246 PSSYLDIKQRLKAGRVIRSLLATTNYVIVVEHDLSVLDYLSDFVCVLYGVPSMYGVVTLP 305
Query: 301 KGTRNGINEFLQGYLKDENVRFRPYEIRF--TKLSERVDVERETLVEYPRLVKDYGSFKL 358
R GIN FL G++ EN+RFR + F S+ + +R YP V + G FKL
Sbjct: 306 YSVREGINIFLDGHIPTENLRFRSEALTFRLADASDEITADRTAEYNYPDHVIEQGDFKL 365
Query: 359 EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG 418
++ G E+I ++G NG GKTTF K +A DL ++ KPQ I +++G
Sbjct: 366 TIKSGGFSDAEIIVLLGENGTGKTTFCKWMAKNS---------DLKISMKPQTIAPKFQG 416
Query: 419 TVYEL-LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDAD 477
TV L L KI ++ LN F ++E+ KPL I ++ D+ V +LSGGELQRVAI L AD
Sbjct: 417 TVRMLFLKKIRAAFLNGKF-QSEVCKPLSIDNIIDQEVLNLSGGELQRVAICLALGMPAD 475
Query: 478 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGR 537
+YL+DEPSAYLD EQR+ S+ IR + + KTA +VEHD +M Y++DR+I+FEG+P R
Sbjct: 476 VYLIDEPSAYLDSEQRIIASKVIRRFIVNSRKTAFIVEHDFIMATYLADRVILFEGQPSR 535
Query: 538 HGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 592
R PP + GMN FL ++ +TFRRDP++ RPR NK S D+EQK G Y++
Sbjct: 536 DARCNPPQSLLTGMNTFLKNLDVTFRRDPNTLRPRINKFDSQMDQEQKNAGNYFF 590
>gi|4506559 ATP-binding cassette, sub-family E, member 1; Ribonuclease L (2',
5'-oligoisoadenylate synthetase-dependent); ribonuclease
L (2',5'-oligoisoadenylate synthetase-dependent)
inhibitor; RNase L inhibitor [Homo sapiens]
>gi|2136130|pir||A57017 RNase L inhibitor - human
>gi|987870|emb|CAA53972.1| (X76388) RNase L inhibitor
[Homo sapiens]
Length = 599
Score = 530 bits (1350), Expect = e-149
Identities = 270/591 (45%), Positives = 382/591 (63%), Gaps = 5/591 (0%)
Query: 6 RIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKC 65
RIA++++DKC P KC C++ CPV RMG I + ++ I E C GCGIC+ KC
Sbjct: 7 RIAIVNHDKCKPKKCRQE-CKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGICIKKC 65
Query: 66 PFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG 125
PF A+SIVNLP L+++ HRY NAF L+RLPI + G V+G+VG NG GK+ A+KILAG
Sbjct: 66 PFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSAALKILAG 125
Query: 126 QLIPNL--CEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR 183
+ PNL +D W ++ FRG+ELQNYF ++ +++ ++KPQYV + KG V
Sbjct: 126 KQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVARFLRLAKGTVG 185
Query: 184 ELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSS 243
+L + DE V ++L+L ++ +R + LSGGELQR A A ++KA + FDEPSS
Sbjct: 186 SILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSS 245
Query: 244 YLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGT 303
YLD++QRLK A IR L N + ++VVEHDL+VLDYLSD I +YG P YG+ + P
Sbjct: 246 YLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSV 305
Query: 304 RNGINEFLQGYLKDENVRFRPYEIRF--TKLSERVDVERETLVEYPRLVKDYGSFKLEVE 361
R GIN FL GY+ EN+RFR + F + + +V++ + +YP + K G F+L +
Sbjct: 306 REGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEFELAIV 365
Query: 362 PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVY 421
GE E++ ++G NG GKTTF++MLAG +P EG L V+YKPQ I + G+V
Sbjct: 366 AGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKSTGSVR 425
Query: 422 ELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLL 481
+LL + + T+++KPL I ++ D+ V+ LSGGELQRV + L + AD+YL+
Sbjct: 426 QLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVRLRLCLGKPADVYLI 485
Query: 482 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRA 541
DEPSAYLD EQRL +R ++ + +KTA VVEHD +M Y++DR+IVF+G P ++ A
Sbjct: 486 DEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVA 545
Query: 542 LPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 592
P + GMN+FL+ + ITFRRDP++ RPR NK S+KD EQK G Y++
Sbjct: 546 NSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFF 596
>emb|CAA52920.1| (X74987) 2'-5' oligoadenylate binding protein [Homo sapiens]
Length = 402
Score = 354 bits (899), Expect = 2e-96
Identities = 182/397 (45%), Positives = 259/397 (64%), Gaps = 2/397 (0%)
Query: 198 VVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI 257
V ++L+L ++ +R + LSGGELQR A A ++KA + FDEPSSYLD++QRLK A I
Sbjct: 3 VCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSSYLDVKQRLKAAITI 62
Query: 258 RRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKD 317
R L N + ++VVEHDL+VLDYLSD I +YG P YG+ + P R GIN FL GY+
Sbjct: 63 RSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIFLDGYVPT 122
Query: 318 ENVRFRPYEIRF--TKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVG 375
EN+RFR + F + + +V++ + +YP + K G F+L + GE E++ ++G
Sbjct: 123 ENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEFELAIVAGEFTDSEIMVMLG 182
Query: 376 PNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSN 435
NG GKTTF++MLAG +P EG L V+YKPQ I + G+V +LL +
Sbjct: 183 ENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKSTGSVRQLLHEKIRDAYTHP 242
Query: 436 FYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 495
+ T+++KPL I ++ D+ V+ LSGGELQRV + L + AD+YL+DEPSAYLD EQRL
Sbjct: 243 QFVTDVMKPLQIENIIDQEVQTLSGGELQRVRLRLCLGKPADVYLIDEPSAYLDSEQRLM 302
Query: 496 VSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFL 555
+R ++ + +KTA VVEHD +M Y++DR+IVF+G P ++ A P + GMN+FL
Sbjct: 303 AARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKFL 362
Query: 556 ASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 592
+ + ITFRRDP++ RPR NK S+KD EQK G Y++
Sbjct: 363 SQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFF 399
Score = 120 bits (299), Expect = 3e-26
Identities = 97/290 (33%), Positives = 153/290 (52%), Gaps = 55/290 (18%)
Query: 77 EQLDEDCVHRY-GVNAFV-LYRLPIVK----DGMVVGIVGPNGTGKTTAVKILAGQLIPN 130
E++ + C+++Y G+ + + L IV D ++ ++G NGTGKTT +++LAG+L P+
Sbjct: 143 EEVKKMCMYKYPGMKKKMGEFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPD 202
Query: 131 LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVV----KPQYVDLLPKAVKGKVRELL 186
+ GE+ PV+ KPQ + PK+ G VR+LL
Sbjct: 203 ---------------------------EGGEV-PVLNVSYKPQKIS--PKST-GSVRQLL 231
Query: 187 -KKVDEVGKFEE----VVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEP 241
+K+ + + V+K L++EN++D+E+ LSGGELQRV + L + A Y DEP
Sbjct: 232 HEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVRLRLCLGKPADVYLIDEP 291
Query: 242 SSYLDIRQRLKVARVIRR-LANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP 300
S+YLD QRL ARV++R + + K VVEHD + YL+D + V G P + + P
Sbjct: 292 SAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSP 351
Query: 301 KGTRNGINEFLQ----GYLKDENVRFRPYEIRFTKLSERVDVERETLVEY 346
+ G+N+FL + +D N +RP R KL+ DVE++ Y
Sbjct: 352 QTLLAGMNKFLSQLEITFRRDPN-NYRP---RINKLNSIKDVEQKKSGNY 397
>gi|11436923 ATP-binding cassette, sub-family E, member 1 [Homo sapiens]
Length = 361
Score = 326 bits (828), Expect = 3e-88
Identities = 168/357 (47%), Positives = 235/357 (65%), Gaps = 2/357 (0%)
Query: 238 FDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIF 297
FDEPSSYLD++QRLK A IR L N + ++VVEHDL+VLDYLSD I +YG P YG+
Sbjct: 2 FDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVV 61
Query: 298 SKPKGTRNGINEFLQGYLKDENVRFRPYEIRF--TKLSERVDVERETLVEYPRLVKDYGS 355
+ P R GIN FL GY+ EN+RFR + F + + +V++ + +YP + K G
Sbjct: 62 TMPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGE 121
Query: 356 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAE 415
F+L + GE E++ ++G NG GKTTF++MLAG +P EG L V+YKPQ I +
Sbjct: 122 FELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPK 181
Query: 416 YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRD 475
G+V +LL + + T+++KPL I ++ D+ V+ LSGGELQRVA+A L +
Sbjct: 182 STGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALALCLGKP 241
Query: 476 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEP 535
AD+YL+DEPSAYLD EQRL +R ++ + +KTA VVEHD +M Y++DR+IVF+G P
Sbjct: 242 ADVYLIDEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVP 301
Query: 536 GRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 592
++ A P + GMN+FL+ + ITFRRDP++ RPR NK S+KD EQK G Y++
Sbjct: 302 SKNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFF 358
Score = 124 bits (309), Expect = 2e-27
Identities = 99/290 (34%), Positives = 155/290 (53%), Gaps = 55/290 (18%)
Query: 77 EQLDEDCVHRY-GVNAFV-LYRLPIVK----DGMVVGIVGPNGTGKTTAVKILAGQLIPN 130
E++ + C+++Y G+ + + L IV D ++ ++G NGTGKTT +++LAG+L P+
Sbjct: 102 EEVKKMCMYKYPGMKKKMGEFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPD 161
Query: 131 LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVV----KPQYVDLLPKAVKGKVRELL 186
+ GE+ PV+ KPQ + PK+ G VR+LL
Sbjct: 162 ---------------------------EGGEV-PVLNVSYKPQKIS--PKST-GSVRQLL 190
Query: 187 -KKVDEVGKFEE----VVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEP 241
+K+ + + V+K L++EN++D+E+ LSGGELQRVA+A L + A Y DEP
Sbjct: 191 HEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPADVYLIDEP 250
Query: 242 SSYLDIRQRLKVARVIRR-LANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP 300
S+YLD QRL ARV++R + + K VVEHD + YL+D + V G P + + P
Sbjct: 251 SAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSP 310
Query: 301 KGTRNGINEFLQ----GYLKDENVRFRPYEIRFTKLSERVDVERETLVEY 346
+ G+N+FL + +D N +RP R KL+ DVE++ Y
Sbjct: 311 QTLLAGMNKFLSQLEITFRRDPN-NYRP---RINKLNSIKDVEQKKSGNY 356
>pir||B82393 ABC transporter, ATP-binding protein VCA0977 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658417|gb|AAF96873.1| (AE004424) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 539
Score = 131 bits (325), Expect = 3e-29
Identities = 126/487 (25%), Positives = 224/487 (45%), Gaps = 72/487 (14%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQN----YFE 155
++ G + IVG +G+GK+ + L QL+P + + F G EL N
Sbjct: 33 IRPGETLAIVGESGSGKSVSTNALM-QLLPKNARIHPESSIM---FEGEELLNKTDTQMR 88
Query: 156 RLKNGEIRPVVKPQYVDLLPKAVKG-KVRELLKKVDEVGKFEEVVKELEL---------E 205
R++ I + + L P G +V E ++ V + + + LEL +
Sbjct: 89 RIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCHRNVSQNQAKQRVLELFQLVHLPDPK 148
Query: 206 NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL-ANEG 264
+ H+ SGG+LQR+ IA AL+ + DEP++ LD+ + +V R+I+ + AN G
Sbjct: 149 GAYQKFPHEFSGGQLQRIMIAMALINEPDILIADEPTTALDVTVQAEVLRLIKEIQANMG 208
Query: 265 KAVLVVEHDLAVLDYLSDVIHV-----VYGEPGVYGIFSKPKG--TRNGINEFLQGYLKD 317
A+L + HDL V+ +++D + V V + +F +P+ TR IN +G KD
Sbjct: 209 MAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTEQLFLQPEHDYTRMLINSIPKGS-KD 267
Query: 318 ENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPG---EIRKGEVIGIV 374
P + L + D+ + LV+ P + + E G E+++GE +GIV
Sbjct: 268 ------PVAVDAAPLLKAEDIRVKFLVK-PYFISRRNQY-FEAVKGISLELKQGETLGIV 319
Query: 375 GPNGIGKTTFVKMLAGVEEPTEGKVEW------------------DLTVAYKPQYIKAEY 416
G +G GK+T + L G+ P+ G++ + D+ + ++ Y
Sbjct: 320 GESGSGKSTLGRALIGLL-PSTGQIAFKGQDFRALSEKQRLALKKDIQMVFQDPYGSLSP 378
Query: 417 EGTVYELL-----------SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQR 465
TV E++ SK++ + + L P I +R + SGG+ QR
Sbjct: 379 RMTVGEIITEGLLVHQPHISKLERMQRARRALEEVRLDPNSI----NRYPHEFSGGQRQR 434
Query: 466 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 525
+AIA L+ + LLDEP++ LD +L V ++ + ++ L + HD+ ++ +S
Sbjct: 435 IAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALS 494
Query: 526 DRLIVFE 532
DR++V +
Sbjct: 495 DRVLVMQ 501
>pir||C81128 ABC transporter, ATP-binding protein NMB1051 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226291|gb|AAF41449.1| (AE002455) ABC transporter,
ATP-binding protein [Neisseria meningitidis MC58]
Length = 636
Score = 126 bits (313), Expect = 8e-28
Identities = 145/560 (25%), Positives = 246/560 (43%), Gaps = 97/560 (17%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN--- 159
G VG++G NG GK++ +KILAG + L + N ++ + +++F++
Sbjct: 29 GEKVGLIGRNGAGKSSFLKILAG--LQKLDDGQIIVQNNLKIVYVPQ-ESFFDKDATVFD 85
Query: 160 ------GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVG---------KFEEVVKEL-- 202
GEIR +++ +Y + + G LLK+++E+ K + VK+
Sbjct: 86 TVAEGLGEIRDLLR-RYHHVSHELENGSSEALLKELNELQLEIEAKDGWKLDAAVKQTLG 144
Query: 203 ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 262
EL + ++ LSGG+ +RVA+A A ++K DEP+++LDI + + +++ A
Sbjct: 145 ELGLPENEKIGNLSGGQKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLK--AF 202
Query: 263 EGKAVLVVEHDLAVLDYLSDVI-----HVVYGEPGVYGIFSKPKGTRNGI----NEFLQG 313
EG V V+ HD LD ++ I ++ PG + +S+ K + N
Sbjct: 203 EGSLV-VITHDRRFLDNIATRIVELDRGILRSYPGSFSKYSEKKAQELAVEAEHNRLFDK 261
Query: 314 YLKDENVRFRP-YEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGE-------- 364
+ E R E R T+ RV E + G +++ GE
Sbjct: 262 FHAQEEAWIRKGIEARRTRNEGRVRRLEELRRQRAERRNVQGQVNFKLDSGEKSGKIIAE 321
Query: 365 --------------------IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE--WD 402
+++G+ IG++GPNGIGKTTF+K++ G +PT G++
Sbjct: 322 LEHASFAYGGKVIMDKFSAILQRGDKIGLIGPNGIGKTTFLKLILGELQPTYGRIRIGSK 381
Query: 403 LTVAYKPQYIKAEYEG-TVYELLSKID-------SSKLNSNFYKTELLKPLGIIDLYDRN 454
VAY Q+ A E TV+ L + + K ++ + L P
Sbjct: 382 QEVAYFDQFRSALNENDTVFYTLGQGNDYVEVGGKKKHVMSYLEDFLFHPARA----QSP 437
Query: 455 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 514
V LSGGE R+ +A R A+I +LDEP+ LD++ + L+ + T +V
Sbjct: 438 VSSLSGGERNRLLLAKLFTRPANILVLDEPTNDLDID----TQELLEDLLRDYQGTVFLV 493
Query: 515 EHDVLMIDYVSDRLIVFEGEPGRHGRALPPMG---------MREGMNRFLASVGITFRRD 565
HD + +D V + IVFEG+ GR +G RE + AS +
Sbjct: 494 SHDRMFLDNVITQSIVFEGQ----GRLKEYIGGYQDYIDAKSREDKIQ-TASAPKASDAE 548
Query: 566 PDSGRPRANKEGSVKDREQK 585
P +P+AN+ + +EQ+
Sbjct: 549 PAKEKPKANRTVKLSYKEQR 568
>emb|CAB45011.1| (AJ242839) putative ATP-binding protein [Neisseria gonorrhoeae]
Length = 636
Score = 125 bits (312), Expect = 1e-27
Identities = 131/499 (26%), Positives = 224/499 (44%), Gaps = 81/499 (16%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN--- 159
G VG++G NG GK++ +KIL G + L + N ++ + +++F++
Sbjct: 29 GEKVGLIGRNGAGKSSFLKILTG--VQKLDDGQIIVQNNLKIVYVPQ-ESFFDKDATVFD 85
Query: 160 ------GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVG---------KFEEVVKEL-- 202
GEIR +++ +Y + + G LLK+++E+ K + VK+
Sbjct: 86 TVAEGLGEIRDLLR-RYHHVSHELENGSSELLLKELNELQLEIEAKDGWKLDAAVKQTLG 144
Query: 203 ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 262
EL ++++ LSGG+ +RVA+A A ++K DEP+++LDI + + +++ A
Sbjct: 145 ELGLPENKKIGNLSGGQKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLK--AF 202
Query: 263 EGKAVLVVEHDLAVLDYLSDVI-----HVVYGEPGVYGIFSKPKGTRNGI----NEFLQG 313
EG V V+ HD LD ++ I ++ PG + +S+ K + N
Sbjct: 203 EGSLV-VITHDRRFLDNIATRIVELDRGILRSYPGSFSKYSEKKAQELAVEAEHNRLFDK 261
Query: 314 YLKDENVRFRP-YEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGE-------- 364
+ E R E R T+ RV E + G +++ G+
Sbjct: 262 FHAQEEAWIRKGIEARRTRNEGRVRRLEELRRQRAERRNVQGQVNFKLDSGKKSGKIIAE 321
Query: 365 --------------------IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE--WD 402
+++G+ IG++GPNGIGKTTF+K++ G +PT G++
Sbjct: 322 LEHASFAYDDKVIMDKFSAILQRGDKIGLIGPNGIGKTTFLKLILGELQPTYGRIRIGSK 381
Query: 403 LTVAYKPQYIKAEYEG-TVYELLS------KIDSSKLNSNFYKTELLKPLGIIDLYDRNV 455
VAY Q+ A E TV+ L ++ K + Y + L P V
Sbjct: 382 QEVAYFDQFRSALNENDTVFYTLGQGNDYVEVGGKKKHVMSYLEDFLFPPA---RAQSPV 438
Query: 456 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 515
LSGGE R+ +A R A+I +LDEP+ LD++ + L+ + T +V
Sbjct: 439 SSLSGGERNRLLLAKLFTRPANILVLDEPTNDLDID----TQELLEDLLRDYQGTVFLVS 494
Query: 516 HDVLMIDYVSDRLIVFEGE 534
HD + +D V + IVFEG+
Sbjct: 495 HDRMFLDNVITQSIVFEGQ 513
>pir||A81893 probable ABC transporter ATP-binding protein NMA1249 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|5051450|emb|CAB44971.1| (AJ242841) putative
ATP-binding protein [Neisseria meningitidis]
>gi|7379931|emb|CAB84504.1| (AL162755) putative ABC
transporter ATP-binding protein [Neisseria meningitidis
Z2491]
Length = 636
Score = 124 bits (309), Expect = 2e-27
Identities = 142/560 (25%), Positives = 245/560 (43%), Gaps = 97/560 (17%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN--- 159
G +G++G NG GK++ +KILAG + L + N ++ + +++F++
Sbjct: 29 GEKIGLIGRNGAGKSSFLKILAG--VQKLDDGQIIVQNNLKIVYVPQ-ESFFDKEATVFD 85
Query: 160 ------GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVG---------KFEEVVKEL-- 202
GEIR +++ +Y + + G LLK+++E+ K + VK+
Sbjct: 86 TVAEGLGEIRDLLR-RYHHVSHELENGSSEALLKELNELQLEIEAKDGWKLDAAVKQTLG 144
Query: 203 ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 262
EL + ++ LSGG+ +RVA+A A ++K DEP+++LDI + + +++ A
Sbjct: 145 ELGLPENEKIGNLSGGQKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLK--AF 202
Query: 263 EGKAVLVVEHDLAVLDYLSDVI-----HVVYGEPGVYGIFSKPKGTRNGI----NEFLQG 313
EG V V+ HD LD ++ I ++ PG + +S+ K + N
Sbjct: 203 EGSLV-VITHDRRFLDNIATRIVELDRGILRSYPGSFSKYSEKKAQELAVEAEHNRLFDK 261
Query: 314 YLKDENVRFRP-YEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGE-------- 364
+ E R E R T+ RV E + G +++ GE
Sbjct: 262 FHAQEEAWIRKGIEARRTRNEGRVRRLEELRRQRAERRNVQGQVNFKLDSGEKSGKIIAE 321
Query: 365 --------------------IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE--WD 402
+++G+ IG++GPNGIGKTTF+K++ G +PT G++
Sbjct: 322 LEHASFTYGDKVIMDKFSAILQRGDKIGLIGPNGIGKTTFLKLILGELQPTYGRIRIGSK 381
Query: 403 LTVAYKPQYIKAEYEG-TVYELLSKID-------SSKLNSNFYKTELLKPLGIIDLYDRN 454
VAY Q+ E TV+ L + + K ++ + L P
Sbjct: 382 QEVAYFDQFRSTLNENDTVFYTLGQGNDYVEVGGKKKHVMSYLEDFLFHPARA----QSP 437
Query: 455 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 514
V LSGGE R+ +A R A+I +LDEP+ LD++ + L+ + T +V
Sbjct: 438 VSSLSGGERNRLLLAKLFTRPANILILDEPTNDLDID----TQELLEDLLRDYQGTVFLV 493
Query: 515 EHDVLMIDYVSDRLIVFEGEPGRHGRALPPMG---------MREGMNRFLASVGITFRRD 565
HD + +D V + I+FEG +GR +G RE + S T +
Sbjct: 494 SHDRMFLDNVITQSIIFEG----NGRLKEYIGGYQDYIDAKSREAKIQ-TESAPKTADAE 548
Query: 566 PDSGRPRANKEGSVKDREQK 585
P +P+AN+ + +EQ+
Sbjct: 549 PVKEKPKANRTVKLSYKEQR 568
>pir||D70867 hypothetical protein Rv2477c - Mycobacterium tuberculosis (strain
H37RV) >gi|2791517|emb|CAA16054.1| (AL021246)
hypothetical protein Rv2477c [Mycobacterium
tuberculosis]
Length = 558
Score = 122 bits (303), Expect = 1e-26
Identities = 133/510 (26%), Positives = 221/510 (43%), Gaps = 103/510 (20%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAG--------------------QLIPNLCEDNDSWDNVI 142
G +G+VGPNG GK++ ++I+AG Q P L ED NV
Sbjct: 31 GAKIGVVGPNGAGKSSVLRIMAGLDKPNNGDAFLATGATVGILQQEPPLNEDKTVRGNVE 90
Query: 143 RAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEV---GKFEEVV 199
+++ +R E+ ++ Y D L + + G+++E L D + E+ +
Sbjct: 91 EGM--GDIKIKLDRFN--EVAELMATDYTDELMEEM-GRLQEELDHADAWDLDAQLEQAM 145
Query: 200 KELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 259
L D + LSGGE +RVA+ LL K DEP+++LD V + +
Sbjct: 146 DALRCPPA-DEPVTNLSGGERRRVALCKLLLSKPDLLLLDEPTNHLDAE---SVQWLEQH 201
Query: 260 LANEGKAVLVVEHDLAVLDYLSDVIHVV-----YGEPGVYGIFSKPKGTRNGI----NEF 310
LA+ A+L V HD LD +++ I + Y G Y + + K R + +
Sbjct: 202 LASYPGAILAVTHDRYFLDNVAEWILELDRGRAYPYEGNYSTYLEKKAERLAVQGRKDAK 261
Query: 311 LQGYLKDE---------------NVRFRPYE--IRFTKLSERVDVER----------ETL 343
LQ L +E R + YE + + ++D E +
Sbjct: 262 LQKRLTEELAWVRSGAKARQAKSKARLQRYEEMAAEAEKTRKLDFEEIQIPVGPRLGNVV 321
Query: 344 VEYPRLVKDY-GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD 402
VE L K Y G ++ + + ++G++GPNG+GKTT K + G+E P G V+
Sbjct: 322 VEVDHLDKGYDGRALIKDLSFSLPRNGIVGVIGPNGVGKTTLFKTIVGLETPDSGSVKVG 381
Query: 403 LTVAYKPQYIKAEYEG-----TVYELLS------KIDSSKLNSNFYKT-------ELLKP 444
TV K Y+ G TV+E++S ++ +++ S Y + + KP
Sbjct: 382 ETV--KLSYVDQARAGIDPRKTVWEVVSDGLDYIQVGQTEVPSRAYVSAFGFKGPDQQKP 439
Query: 445 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 504
G+ LSGGE R+ +A TL + ++ LLDEP+ LDVE ++ A+ +
Sbjct: 440 AGV----------LSGGERNRLNLALTLKQGGNLILLDEPTNDLDVETLGSLENALLNF- 488
Query: 505 EKNEKTALVVEHDVLMIDYVSDRLIVFEGE 534
A+V+ HD +D ++ +EG+
Sbjct: 489 ---PGCAVVISHDRWFLDRTCTHILAWEGD 515
>emb|CAB44947.1| (AJ242840) putative ATP-binding protein [Neisseria gonorrhoeae]
Length = 636
Score = 122 bits (302), Expect = 2e-26
Identities = 130/499 (26%), Positives = 222/499 (44%), Gaps = 81/499 (16%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN--- 159
G VG++G NG GK++ +KIL G + L + N ++ + +++F++
Sbjct: 29 GEKVGLIGRNGAGKSSFLKILTG--VQKLDDGQIIVQNNLKIVYVPQ-ESFFDKDATVFD 85
Query: 160 ------GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVG---------KFEEVVKEL-- 202
GEI +++ +Y + + G LLK+++E+ K + VK+
Sbjct: 86 TVAEGLGEICDLLR-RYHHVSHELENGSSELLLKELNELQLEIEAKDGWKLDAAVKQTLG 144
Query: 203 ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 262
EL + ++ LSGG+ +RVA+A A ++K DEP+++LDI + + +++ A
Sbjct: 145 ELGLPENEKIGNLSGGQKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLK--AF 202
Query: 263 EGKAVLVVEHDLAVLDYLSDVI-----HVVYGEPGVYGIFSKPKGTRNGI----NEFLQG 313
EG V V+ HD LD ++ I ++ PG + +S+ K + N
Sbjct: 203 EGSLV-VITHDRRFLDNIATRIVELDRGILRSYPGSFSKYSEKKAQELAVEAEHNRLFDK 261
Query: 314 YLKDENVRFRP-YEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGE-------- 364
+ E R E R T+ RV E + G +++ G+
Sbjct: 262 FHAQEEAWIRKGIEARRTRNEGRVRRLEELRRQRAERRNVQGQVNFKLDSGKKSGKIIAE 321
Query: 365 --------------------IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE--WD 402
+++G+ IG++GPNGIGKTTF+K++ G +PT G++
Sbjct: 322 LEHASFAYDDKVIMDKFSAILQRGDKIGLIGPNGIGKTTFLKLILGELQPTYGRIRIGSK 381
Query: 403 LTVAYKPQYIKAEYEG-TVYELLS------KIDSSKLNSNFYKTELLKPLGIIDLYDRNV 455
VAY Q+ A E TV+ L ++ K + Y + L P V
Sbjct: 382 QEVAYFDQFRSALNENDTVFYTLGQGNDYVEVGGKKKHVMSYLEDFLFPPA---RAQSPV 438
Query: 456 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 515
LSGGE R+ +A R A+I +LDEP+ LD++ + L+ + T +V
Sbjct: 439 SSLSGGERNRLLLAKLFTRPANILVLDEPTNDLDID----TQELLEDLLRDYQGTVFLVS 494
Query: 516 HDVLMIDYVSDRLIVFEGE 534
HD + +D V + IVFEG+
Sbjct: 495 HDRMFLDNVITQSIVFEGQ 513
>emb|CAB44978.1| (AJ242842) putative ATP-binding protein [Neisseria meningitidis]
Length = 636
Score = 121 bits (300), Expect = 3e-26
Identities = 143/560 (25%), Positives = 244/560 (43%), Gaps = 97/560 (17%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN--- 159
G VG++G NG GK++ +KILAG + L + N ++ + +++F++
Sbjct: 29 GEKVGLIGRNGAGKSSFLKILAG--VQKLDDGQIIIQNNLKIVYVPQ-ESFFDKDATVFD 85
Query: 160 ------GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVG---------KFEEVVKEL-- 202
GEIR +++ +Y + + G LLK+++E+ K + VK+
Sbjct: 86 TVAEGLGEIRDLLR-RYHRVGHELENGSGEALLKELNELQLEIEAKDGWKLDAAVKQTLG 144
Query: 203 ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 262
EL + ++ LSGG+ +RVA+A A ++K DEP+++LDI + + +++ A
Sbjct: 145 ELGLPENEKIGNLSGGQKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLK--AF 202
Query: 263 EGKAVLVVEHDLAVLDYLSDVI-----HVVYGEPGVYGIFSKPKGTRNGI----NEFLQG 313
EG V V+ HD LD ++ I ++ PG + +S+ K + N
Sbjct: 203 EGSLV-VITHDRRFLDNIATRIVELDRGILRSYPGSFSKYSEKKVQELAVEAEHNRLFDK 261
Query: 314 YLKDENVRFRP-YEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGE-------- 364
+ E R E R T+ RV E + G +++ GE
Sbjct: 262 FHAQEEAWIRKGIEARRTRNEGRVRRLEELRRQRAERRNVQGQVNFKLDSGEKSGKIIAE 321
Query: 365 --------------------IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE--WD 402
+++G+ IG++GPNGIGKTTF+K++ G PT G++
Sbjct: 322 LEHASFAYGDKVIMDKFSAILQRGDKIGLIGPNGIGKTTFLKLILGELNPTYGRIRIGSK 381
Query: 403 LTVAYKPQYIKAEYEG-TVYELLSKID-------SSKLNSNFYKTELLKPLGIIDLYDRN 454
VAY Q+ E TV+ L + + K ++ + L P
Sbjct: 382 QEVAYFDQFRSTLNENDTVFYTLGQGNDYVEVGGKKKHVMSYLEDFLFHPARA----QSP 437
Query: 455 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 514
V LSGGE R+ +A R A+I +LDEP+ LD++ + L+ + T +V
Sbjct: 438 VSSLSGGERNRLLLAKLFTRPANILILDEPTNDLDID----TQELLEDLLRDYQGTVFLV 493
Query: 515 EHDVLMIDYVSDRLIVFEGEPGRHGRALPPMG---------MREGMNRFLASVGITFRRD 565
HD + +D V + I+FEG +GR +G RE + S T +
Sbjct: 494 SHDRMFLDNVITQSIIFEG----NGRLKEYIGGYQDYIDAKSREAKIQ-TESAPKTADAE 548
Query: 566 PDSGRPRANKEGSVKDREQK 585
P +P+AN+ + +EQ+
Sbjct: 549 PVKEKPKANRTVKLSYKEQR 568
>emb|CAB71215.1| (AL138538) putative ABC transpoter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 547
Score = 120 bits (298), Expect = 4e-26
Identities = 132/512 (25%), Positives = 222/512 (42%), Gaps = 107/512 (20%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN-------VIRAFRGNELQNYFE 155
G +G+VGPNG GK+T +KI+AG P+ + D++ + +++ NE + E
Sbjct: 24 GAKIGVVGPNGAGKSTVLKIMAGLEQPS---NGDAFLSPGYTVGILLQEPPLNEEKTVLE 80
Query: 156 RLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENV--LDRELH 213
++ G K + + + + + L ++E+GK +E EL+ N LD +L
Sbjct: 81 NVQEGVAEVKGKLDRFNEIAEQMATDYSDAL--LEEMGKLQE---ELDHANAWDLDAQLE 135
Query: 214 Q----------------LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI 257
Q LSGGE +RVA+ LL DEP+++LD V +
Sbjct: 136 QAMDALGCPPGDWPVVNLSGGEKRRVALCKLLLEAPDLLLLDEPTNHLDAES---VNWLE 192
Query: 258 RRLANEGKAVLVVEHDLAVLDYLSDVIHVV-----YGEPGVYGIFSKPKGTRNGIN---- 308
+ LA V+ V HD LD ++ I V +G G Y + + K TR +
Sbjct: 193 QHLAKYEGTVVAVTHDRYFLDNVAGWICEVDRGRLHGYEGNYSKYLETKATRLKVEGQKD 252
Query: 309 -----------EFLQGYLKDENVRFRPYEIRFTKLSERVDVERE---------------- 341
E+++ K + + R+ +++ D R+
Sbjct: 253 AKRQKRLKDELEWVRSNAKGRQAKSKARLARYEEMAAEADKMRKLDFEEIQIPPGPRLGN 312
Query: 342 TLVEYPRLVKDYGSFKLEVEPG-EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE 400
+VE L K +G L + + + ++G++GPNG GKTT KM+ G EEP G+++
Sbjct: 313 VVVEVNNLSKAFGEKVLIDDLSFTLPRNGIVGVIGPNGAGKTTLFKMIQGFEEPDSGEIK 372
Query: 401 WDLTVAYKPQYIKAEYE-----GTVYELLS------KIDSSKLNSNFYKT-------ELL 442
TV K Y+ E T++ ++S + ++ S Y + +
Sbjct: 373 VGDTV--KISYVDQSREHIDPKKTLWAVVSDELDYINVGQVEMPSRAYVSAFGFKGPDQQ 430
Query: 443 KPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 502
K G+ LSGGE R+ +A TL + ++ LLDEP+ LDVE ++ A+
Sbjct: 431 KAAGV----------LSGGERNRLNLALTLKQGGNLLLLDEPTNDLDVETLSSLENALLE 480
Query: 503 LMEKNEKTALVVEHDVLMIDYVSDRLIVFEGE 534
A+VV HD +D V+ ++ +EGE
Sbjct: 481 F----PGCAVVVSHDRWFLDRVATHILAYEGE 508
>gb|AAK42084.1| ABC transporter, ATP binding protein. [Sulfolobus solfataricus]
Length = 530
Score = 118 bits (293), Expect = 2e-25
Identities = 126/496 (25%), Positives = 219/496 (43%), Gaps = 83/496 (16%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR-------GNELQN 152
+++G V I G +G+GK+T V ++ G +IP+L N +R F +E+
Sbjct: 28 IEEGESVLITGRSGSGKSTLVSVING-VIPHLI--NAEVKGEVRVFGLDIKTTPTSEISR 84
Query: 153 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDREL 212
Y L P + ++ + G ++ + + + + EE +K + ++ DRE+
Sbjct: 85 YVGTLLQD---PDTQAFNYTVIDEVAFGVENYMVSREEMINRVEESMKICGISHLRDREI 141
Query: 213 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 272
+ LSGGELQR +A+ L + DEP+S +D + ++ +++ +EG ++++VEH
Sbjct: 142 NTLSGGELQRTVLASVLAMRPKALILDEPTSNIDPQGTREILELVKTFRSEGISLVLVEH 201
Query: 273 DL-AVLDYLSDVIHVVYGEPGV-----------------------YGIFSKPKGTRNGIN 308
+ VL ++ +I V G+ V Y +F K G R
Sbjct: 202 KIERVLPFIDRIIVVESGKIAVDIKKDEIIDRADLLHSLGLEIPDYMLFLKKSGFRRIDY 261
Query: 309 EFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKG 368
E+L+ + ++P R + + E L ++ G + + + +++G
Sbjct: 262 EYLR-----KTYNYKP--------PSRNEGKGEILFASVKVKTKSGKYLINTKI-SLKQG 307
Query: 369 EVIGIVGPNGIGKTTFVKMLAG--------VEEP---TEGK-------VEWDLTVAYKPQ 410
+ ++G NG GKTT +K + G VEE GK VE +AY PQ
Sbjct: 308 TITALMGKNGSGKTTLLKAIVGLIDKKRLIVEEEKVIVNGKDLSKAKLVERGKYLAYLPQ 367
Query: 411 YIKAEYEGTVYELLSKIDSSKLNSNFY-KTELLKPLGIIDLYDRNVED---LSGGELQRV 466
+ + E ++ S N Y + L + L I L ED LS G+ +RV
Sbjct: 368 FFDVMFIKRTVE--DEVKFSMKNRGVYDEMRLGEILRIFSLDAYRTEDPLVLSMGQRRRV 425
Query: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID---- 522
A+A+ + A + L+DEP++ D R + + + L K T LVV HD +D
Sbjct: 426 AMASVIAGGAKVILMDEPTSGQDWYHRQILGKELLELRNKG-YTILVVTHDARFVDRFTD 484
Query: 523 ---YVSDRLIVFEGEP 535
+SD IV EG+P
Sbjct: 485 YLLVMSDGKIVLEGKP 500
>emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related protein
[Thermoplasma acidophilum]
Length = 704
Score = 117 bits (291), Expect = 3e-25
Identities = 143/587 (24%), Positives = 228/587 (38%), Gaps = 171/587 (29%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN----------------------------- 130
+K G +GIVG +G+GK+T + L N
Sbjct: 25 LKQGRFLGIVGESGSGKSTLALSIMSLLPENAMMRGSIYLKGTEYISDVIINNAKKKKAR 84
Query: 131 -LCEDN---DSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELL 186
+ EDN W N+ F+G N F + ++ Q ++ K+ L
Sbjct: 85 KILEDNLRNIRWKNISMVFQG--AMNSFNPVYT------IRRQMFEVF------KIHTTL 130
Query: 187 KKVDEVGKFEEVVKELELE-NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYL 245
+ K EE ++ L +VLD H+LSGG QR IA AL DEP++ L
Sbjct: 131 DNDEIEKKVEEALRMAGLNISVLDMYPHELSGGMKQRAVIAMALSLDPDIVIADEPTTGL 190
Query: 246 DIRQRLKVARVIRRLANEGK--AVLVVEHDLAVLDYLSDVIHVV-------YGE------ 290
D+ + ++ +++L GK +++++ HDL V+ L+D + V+ YGE
Sbjct: 191 DVITQAEIISQLKKLKENGKIKSLILISHDLGVVSQLADEVMVLYAGKVFEYGEKSRIFQ 250
Query: 291 ----PGVYGIFSKPKGTRNGIN--EFLQGYLKDE-------------------------- 318
P Y + RN E + G L D
Sbjct: 251 NTANPYTYKLIGSYPSIRNAKRYVEGIPGSLPDPMKIGKGCKFADRCYMARDVCREEEPE 310
Query: 319 --NVRFRPYEIRF----TKLSERVDVERE--------TLVEYPRLVKDYGSFKLEVEPG- 363
V Y F K S++ DV+ E ++VE LVK Y K +
Sbjct: 311 LIKVEDNHYSACFYWDSIKKSDKSDVKTEPYHVIQQSSMVEVKDLVK-YFEIKESISKAL 369
Query: 364 ----------------EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--- 404
IRKGE++GIVG +G GKTT K L G+ PT GK+ + +
Sbjct: 370 FEREKRFVRAVDDITFAIRKGEILGIVGESGSGKTTLGKTLLGLYSPTAGKITYSFSNGD 429
Query: 405 ----------------------VAYKPQYIKAEYEGTVYELLSK--IDSSKLNSNFYKTE 440
+ ++ Y + TVY+++++ I N K +
Sbjct: 430 VEITPTTSESELMRSSIRKETQMIFQDPYDSLNPKLTVYDIVAEPIIARRYHKGNKEKDD 489
Query: 441 LLK-PLGIIDLYD----------------RNVEDLSGGELQRVAIAATLLRDADIYLLDE 483
+ K PL I++L R +LSGGE QRVA A L+ +++ + DE
Sbjct: 490 IYKNPLEILNLVKIALAKASLKPVENYLFRYPHELSGGERQRVATARALVLNSEFIIADE 549
Query: 484 PSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 530
P++ LDV R + ++ + K T + + HD+ Y+SD+++V
Sbjct: 550 PTSMLDVSIRASFMNMMKEIRSKEGITMVYISHDIASTYYMSDKILV 596
>emb|CAB81023.1| (AL161576) RNase L inhibitor-like protein [Arabidopsis thaliana]
Length = 181
Score = 117 bits (291), Expect = 3e-25
Identities = 67/170 (39%), Positives = 105/170 (61%), Gaps = 6/170 (3%)
Query: 354 GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV-----EEPTEGKVEWDLTVAYK 408
G FKL + GE ++I ++G NG GKTTF+KMLAG EE ++ +V+YK
Sbjct: 6 GDFKLRLNQGEFTDSQIIVMLGENGTGKTTFIKMLAGSKLDIDEEGSQVHEIPQFSVSYK 65
Query: 409 PQYIK-AEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVA 467
Q++ ++E TV +L+ + + + + ++++KPL I +L D++ LSGGE QRVA
Sbjct: 66 NQHMSNRKFEITVRDLIHRKIPNAYAEHQFVSDVMKPLKIEELMDKSFNKLSGGEKQRVA 125
Query: 468 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 517
+A L + ADIYL+DEPSA+LD EQR+ S+ I+ + + +K A H+
Sbjct: 126 LALCLGKSADIYLIDEPSAFLDSEQRIIASKVIKRFILQMKKAAFARFHN 175
Score = 79.6 bits (193), Expect = 9e-14
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 16/158 (10%)
Query: 102 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGE 161
D ++ ++G NGTGKTT +K+LAG + D D + + + + + N +
Sbjct: 19 DSQIIVMLGENGTGKTTFIKMLAGSKL-----DIDEEGSQVHEIPQFSVSYKNQHMSNRK 73
Query: 162 IRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQ 221
V+ +P A E +V+K L++E ++D+ ++LSGGE Q
Sbjct: 74 FEITVRDLIHRKIPNAYA-----------EHQFVSDVMKPLKIEELMDKSFNKLSGGEKQ 122
Query: 222 RVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 259
RVA+A L + A Y DEPS++LD QR+ ++VI+R
Sbjct: 123 RVALALCLGKSADIYLIDEPSAFLDSEQRIIASKVIKR 160
>gb|AAK42217.1| ABC transporter [Sulfolobus solfataricus]
Length = 530
Score = 117 bits (290), Expect = 4e-25
Identities = 123/495 (24%), Positives = 217/495 (42%), Gaps = 81/495 (16%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN-------ELQN 152
+++G V I G +G+GK+T V ++ G +IP+L N +R F + E+
Sbjct: 28 IEEGESVLITGRSGSGKSTLVSVING-VIPHLI--NAEIKGEVRVFGFDVKSTPIHEISK 84
Query: 153 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDREL 212
Y L P + ++ + G ++ + + + + EE +K + ++ DRE+
Sbjct: 85 YVGTLLQD---PDTQAFNYTIIDEVAFGVENYMISRDEMIERVEESMKIYGISHLRDREI 141
Query: 213 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 272
+ LSGGELQR +A+ L + DEP+S +D + ++ +++ +EG ++++VEH
Sbjct: 142 NTLSGGELQRTILASVLAMRPKALILDEPTSNIDPQGTREILELVKTFRSEGISLVLVEH 201
Query: 273 DL-AVLDYLSDVIHVVYGEPGV-----------------------YGIFSKPKGTRNGIN 308
+ VL ++ +I V G+ V Y +F K G R
Sbjct: 202 KIERVLPFVDRIIVVEEGKIAVDVRKDEIVDKADFLYSLGLEIPDYMLFLKKNGFRKIDY 261
Query: 309 EFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKG 368
E+L+ + +RP R+ + E L ++ G + + + +++G
Sbjct: 262 EYLR-----KTYTYRP--------PSRIGGKGEALYASVKVKTKNGIYLINTKI-SLKQG 307
Query: 369 EVIGIVGPNGIGKTTFVKMLA------------------GVEEPTEGKVEWDLTVAYKPQ 410
+ ++G NG GKTT +K++ GV+ VE +AY PQ
Sbjct: 308 TITALMGKNGSGKTTLLKVIVGLIDKKRLIVEEEKVIVNGVDLSKTKLVERGKFIAYLPQ 367
Query: 411 YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVED---LSGGELQRVA 467
+ + E K S K + + L + L + L ED LS G+ +RVA
Sbjct: 368 FFDVMFIKRTVEDEIKF-SMKNRGTYDEKRLGEVLKMFSLDAYRKEDPLVLSMGQRRRVA 426
Query: 468 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 527
+A+ L A + L+DEP++ D R + + + L +K T LVV HD +D +D
Sbjct: 427 MASVLAGGAKVILMDEPTSGQDWYHRQILGKELLELRDKG-YTILVVTHDSRFVDRFADY 485
Query: 528 L-------IVFEGEP 535
L IV EG+P
Sbjct: 486 LLVMNEGKIVLEGKP 500
>pir||T45239 probable ABC transporter ATP-binding protein [imported] -
Mycobacterium leprae >gi|4883445|emb|CAB43155.1|
(AL049913) putative ABC transporter ATP-binding protein
[Mycobacterium leprae]
Length = 556
Score = 116 bits (288), Expect = 7e-25
Identities = 129/498 (25%), Positives = 218/498 (42%), Gaps = 79/498 (15%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCE------------DNDSWDNVIRAFRGNEL 150
G +G+VGPNG GK++ ++I+AG PN + + N + RGN
Sbjct: 31 GAKIGVVGPNGAGKSSVLRIMAGMDKPNNGDAFLATGASVGILQQEPPLNEEKTVRGNVE 90
Query: 151 QNYFE-RLKNGEIRPVVKPQYVDLLPKAVK--GKVRELLKKVDEVGKFEEVVKELELENV 207
+ + ++K V + D + ++ G+++E L D ++ + +++
Sbjct: 91 EGLGDIKIKLDRFSEVAELMATDSSSELMEEMGRLQEELDHADAWDLDSQLEQAMDVLRC 150
Query: 208 L--DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK 265
D + LSGGE +RVA+ LL K DEP+++LD V + + LA
Sbjct: 151 PPPDEPVTNLSGGERRRVALCKLLLSKPDLLLLDEPTNHLDAE---SVQWLEQHLAGYAG 207
Query: 266 AVLVVEHDLAVLDYLSDVIHVV-----YGEPGVYGIFSKPKG----TRNGINEFLQGYLK 316
AVL V HD LD +++ I + Y G Y + + K T+ + LQ L
Sbjct: 208 AVLAVTHDRYFLDNVAEWILELDRGRAYPYEGNYSTYLEKKAERLTTQGRKDAKLQKRLT 267
Query: 317 DE---------------NVRFRPYE--IRFTKLSERVDVER----------ETLVEYPRL 349
DE R + YE + + + D E +VE L
Sbjct: 268 DELAWVRSGAKARQAKSKARLQRYEEMAAEAEKNRKFDFEEIQIPVGPRLGNMVVEVEHL 327
Query: 350 VKDYGSFKLEVEPG-EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYK 408
K YG L + + + ++GI+GPNG+GKTT K + G+E+P G V+ TV K
Sbjct: 328 DKGYGGRTLIKDLSFTLPRNGIVGIIGPNGVGKTTLFKTIVGLEQPDGGAVKIGETV--K 385
Query: 409 PQYIKAEYEG-----TVYELLS------KIDSSKLNSNFYKTELLKPLGIIDLYDRNVED 457
Y+ G V+E++S ++ ++++S Y + G + +
Sbjct: 386 LSYVDQTRAGIDPKKIVWEVVSDGLDHIQVGQTEVSSRAY----VSAFGFKGPDQQKLAG 441
Query: 458 -LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
LSGGE R+ +A TL + ++ LLDEP+ LDVE ++ A+ + A+V+ H
Sbjct: 442 VLSGGERNRLNLALTLKQGGNLILLDEPTNDLDVETLGSLENALVNF----PGCAVVISH 497
Query: 517 DVLMIDYVSDRLIVFEGE 534
D +D ++ +EG+
Sbjct: 498 DRWFLDRTCTHILAWEGD 515
>pir||S76152 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1653498|dbj|BAA18411.1| (D90914) ABC transporter
[Synechocystis sp.]
Length = 636
Score = 113 bits (280), Expect = 6e-24
Identities = 133/504 (26%), Positives = 220/504 (43%), Gaps = 83/504 (16%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN----VIRAFRGNELQNYFE 155
++ G VG++G NG+GK+T +K++AG L P + + W N V+ + E+
Sbjct: 26 IEPGDRVGLIGVNGSGKSTLLKMIAG-LEP--FDGGEYWCNSSAKVVYLPQQPEMDGDRT 82
Query: 156 RLK-----NGEIRPVVKPQYVDLLPK-AVKGKVRELLKKVDEVGKFEEVVKELELENV-- 207
L+ +GE +VK QY L K A +G +LL ++ + E ELE
Sbjct: 83 VLEQVFVDSGEQWQLVK-QYELLSDKLAHQGSDEQLLNQLSALSAQMETSGAWELETQAK 141
Query: 208 ----------LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI 257
LD ++ LSGG +RVAIAAALL + DEP+++LD + +
Sbjct: 142 IILTQLGVDHLDAKVGDLSGGYRKRVAIAAALLSQPDVLLMDEPTNHLDAFSVEWLQSYL 201
Query: 258 RRLANEGKAVLVVEHDLAVLDYLSDVIHVV-----YGEPGVYGIF------------SKP 300
+R A+L++ HD LD +++ I + Y G YG + S
Sbjct: 202 QRFRG---ALLLITHDRYFLDRVTNRILEIDQGELYSYNGNYGYYLTKKAEAEESEQSSQ 258
Query: 301 KGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSE-----------RVDVER------ETL 343
K R + L+ + R + R ++ + +VD+ + +
Sbjct: 259 KKHRGVLRRELEWLKRGPKARSTKQKARIDRIQDMQETSFKTGTGKVDISTAGRRIGKKV 318
Query: 344 VEYPRLVKDYGSFKLEVEPGEI-RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD 402
VE + K + + +L + I G+ +GIVG NG+GK+T + M+ G EP +G V+
Sbjct: 319 VELENISKGFENKQLIKDFSYIFTPGDRVGIVGKNGVGKSTLMNMITGRLEPDQGTVDIG 378
Query: 403 LTVAY------------KPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL 450
T+ + P +Y +V EL+ D + + L P +
Sbjct: 379 STIHFGYFDQHSDDLSLNPNQRVIDYLKSVAELIKTTDGEVITAGQMLERFLFP---PNQ 435
Query: 451 YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 510
+ LSGGE +R+ + L+R ++ +LDEP+ LDV Q LAV + +E
Sbjct: 436 QFAPIAKLSGGEKRRLFLLRVLMRAPNVLILDEPTNDLDV-QTLAV---LEDYLEDFNGC 491
Query: 511 ALVVEHDVLMIDYVSDRLIVFEGE 534
+VV HD +D + + FE E
Sbjct: 492 VIVVSHDRYFLDRTVETIFAFEEE 515
>pir||D82290 ABC transporter, ATP-binding protein VC0698 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655139|gb|AAF93863.1| (AE004156) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 555
Score = 112 bits (278), Expect = 1e-23
Identities = 131/517 (25%), Positives = 218/517 (41%), Gaps = 116/517 (22%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 162
G +G++G NG GK+T ++I+AG + +D D + L + ++ +
Sbjct: 32 GAKIGVLGLNGAGKSTLLRIMAG-----IDKDIDGEARPQPGLKVGYLPQEPKLDESKTV 86
Query: 163 RPVVKPQYVDLLPKAVKGKVRELLKKVDEV--------GKFEEVVKEL------------ 202
R VV+ D V LK++DEV F+ + KE
Sbjct: 87 REVVEEAVAD---------VAYALKRLDEVYAAYAEPDADFDALAKEQGELEALIQAKNG 137
Query: 203 -ELENVLDR------------ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 249
L+N L+R ++ LSGGE +RVAI LL DEP+++LD
Sbjct: 138 HNLDNALERAADALRLPEWDAQVKYLSGGERRRVAICRLLLENPDMLLLDEPTNHLDAES 197
Query: 250 RLKVARVIRRLANEGKAVLVVEHDLAVLDYLSD-VIHVVYGE----PGVYGIF------- 297
VA + R L + V+ + HD LD + ++ + GE G Y +
Sbjct: 198 ---VAWLERFLVDYAGTVVAITHDRYFLDNAAGWILELDRGEGIPWQGNYTSWLEQKDAR 254
Query: 298 -----SKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERET---------- 342
S+ K + I + L+ ++ R + R + E + E +
Sbjct: 255 LKQEASQEKARQKTIEKELEWVRQNPKGRQAKSKARMARFEELQNTEHQKRNETNELFIP 314
Query: 343 --------LVEYPRLVKDY-GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE 393
++E L K + G ++ + KG ++GI+GPNG GK+T KML+GVE+
Sbjct: 315 PGERLGDKVIEVKNLTKSFDGRVLIDDLSFSMPKGAIVGIIGPNGAGKSTLFKMLSGVEK 374
Query: 394 PTEGKVEWDLTV--AYKPQYIKA-EYEGTVYELLSK-IDSSKLNS------------NFY 437
P G +E TV A Q+ + + TV++ +S+ D ++N+ NF
Sbjct: 375 PDSGTIELGDTVKLASVDQFRDSMNDKHTVFQEISEGADIIRINNFEIPARAYCSRFNFK 434
Query: 438 KTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 497
+ K +G +LSGGE RV +A L ++ LLDEP+ LDVE
Sbjct: 435 GVDQQKVIG----------ELSGGERNRVHLAKLLKAGGNVLLLDEPTNDLDVE----TL 480
Query: 498 RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGE 534
RA+ + + A+V+ HD +D ++ ++ + E
Sbjct: 481 RALEEALLEFPGCAMVISHDRWFLDRIATHILDYRDE 517
>sp|Q57242|UUP1_HAEIN ABC TRANSPORTER ATP-BINDING PROTEIN UUP-1 >gi|1074724|pir||E64170
ABC-type transport protein uup-1 - Haemophilus
influenzae (strain Rd KW20) >gi|1574757|gb|AAC22945.1|
(U32809) ABC transporter, ATP-binding protein
[Haemophilus influenzae Rd]
Length = 647
Score = 112 bits (277), Expect = 1e-23
Identities = 133/546 (24%), Positives = 236/546 (42%), Gaps = 75/546 (13%)
Query: 106 VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG----NELQNYFERLKNG- 160
V +VG NG GK+T +KI+AG ++ + + D V+ N N F+ + G
Sbjct: 32 VCLVGRNGAGKSTLLKIIAGDVLMDDGKIQYEKDLVVSRLEQDPPRNAQGNIFDYVAEGV 91
Query: 161 -EIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVG---------KFEEVVKELELENVLD- 209
+ ++K +Y + + + ++L ++++V +FE + E+ L+ L+
Sbjct: 92 GHLTDLLK-EYHQISVQLEENYSDQILSQLEQVQAKLEHADGWRFENKINEVLLKLGLNP 150
Query: 210 -RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 268
+L LSGG L++ A+A AL+ DEP+++LD+ + + L + +++
Sbjct: 151 NTKLSALSGGWLRKAALARALVCDPDVLLLDEPTNHLDVE---AIEWLENFLLDFQGSIV 207
Query: 269 VVEHDLAVLDYLSD-VIHVVYGE----PGVYGIFSKPKGTRNGI----NEFLQGYLKDEN 319
+ HD + + ++ ++ + G+ PG Y ++ K + NE L E
Sbjct: 208 FISHDRSFIRKMATRIVDLDRGQLVSYPGNYDLYLTTKEENLRVEALQNELFDKRLAQEE 267
Query: 320 VRFR----------PYEIRFTKLSERVDVERETLVEYPRLVKDYGS------FKLEVEPG 363
V R +R K+ +R ++ +L D S F++E
Sbjct: 268 VWIRQGIKARRTRNEGRVRALKVMREERRQRRDVMGTAKLQLDTSSRSGKIVFEMEDVSY 327
Query: 364 EIR-------------KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE--WDLTVAYK 408
EI +G+ I +VGPNG GKTTF+K+L G +PT GK+ L +AY
Sbjct: 328 EIAGKTLLKDFSTTILRGDKIALVGPNGCGKTTFIKLLLGEIQPTSGKIRCGTKLEIAYF 387
Query: 409 PQY-IKAEYEGTVYELLS------KIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGG 461
QY + E TV + ++ +I+ K + Y + L P V+ LSGG
Sbjct: 388 DQYRADLDPEKTVMDNVADGKQDIEINGVKRHVLGYLQDFLFP---PKRAMTPVKALSGG 444
Query: 462 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 521
E R+ +A LL+ ++ +LDEP+ LDVE + ++ + T L+V HD I
Sbjct: 445 ERNRLLLAKLLLKPNNLLILDEPTNDLDVE----TLELLEEILTDYQGTLLIVSHDRQFI 500
Query: 522 DYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKD 581
D + +FEG+ + ++ F AS + + P + D
Sbjct: 501 DNTATECYLFEGKGHLNKYVGGFFDAKQQQANFWASKAVEEQAKAKKSEPLKEESAVKND 560
Query: 582 REQKAR 587
R K +
Sbjct: 561 RTSKPK 566
>pir||C82743 ABC transporter ATP-binding protein XF0944 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9105869|gb|AAF83754.1|AE003933_6 (AE003933) ABC
transporter ATP-binding protein [Xylella fastidiosa]
Length = 554
Score = 111 bits (275), Expect = 2e-23
Identities = 130/507 (25%), Positives = 222/507 (43%), Gaps = 96/507 (18%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 162
G +G++G NG GK+T +KI+AG D D ++ RA G ++ Y + +
Sbjct: 33 GAKIGLLGLNGAGKSTVLKIMAGV-------DTD-FEGEARAQPGIKI-GYLAQEPQLDP 83
Query: 163 RPVVKPQYVDLLPKAVKGKVRELLKKV-----DEVGKFEEVVKELE-LENVL-------- 208
+ V+ + + + ++ + L+KV +E F+ + KE E LE +L
Sbjct: 84 QKTVRESVEEGVGEIMQAQAA--LEKVYAAYAEEGADFDALAKEQERLEAILASNDAHTL 141
Query: 209 ----------------DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLK 252
D + LSGGE +RVA+ LL+K DEP+++LD
Sbjct: 142 EQQLDVAADALRLPPWDAAISNLSGGEKRRVALCRLLLQKPDMLLLDEPTNHLDAESVEW 201
Query: 253 VARVIRRLANEGKAVLVVEHDLAVLDYLSDVI-----------------HVVYGEPGVYG 295
+ + ++R V+ V HD LD ++ I +V E +
Sbjct: 202 LEQFLQRYTG---TVVAVTHDRYFLDNAAEWILELDRGRGIPWKGNYTEWLVQKEDRLKQ 258
Query: 296 IFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERE-------------- 341
++ K + I+ L+ ++ + R T+L E E +
Sbjct: 259 EENQEKARQKAIHRELEWARQNAKGGRSKGKARLTRLEELQSQEYQKRNETNEIFIPPGE 318
Query: 342 ----TLVEYPRLVKDYGSFKLEVEPGE--IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 395
+++E+ + K +G +L ++ + G +IGI+GPNG GK+T KM+ G E+P
Sbjct: 319 RLGASVIEFKNVSKTFGD-RLLIDNLSFLVPAGAIIGIIGPNGAGKSTLFKMITGQEKPD 377
Query: 396 EGKVEWDLTV--AYKPQ-YIKAEYEGTVY-ELLSKIDSSKLNSNFYKTELLKPLGIIDL- 450
G++ TV AY Q K E TV+ E+ +D LN N + + +G +
Sbjct: 378 TGEIITGSTVKLAYVDQSRDKLEGSHTVFHEISGGLDI--LNINGIEIQSRAYIGRFNFK 435
Query: 451 ---YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN 507
+ V LSGGE R+ +A TLL+ ++ LLDEPS LD+E RA+ + +
Sbjct: 436 GQDQQKMVGSLSGGERGRLHMAKTLLQGGNVLLLDEPSNDLDIE----TLRALEDALLEF 491
Query: 508 EKTALVVEHDVLMIDYVSDRLIVFEGE 534
V+ HD +D ++ ++ FEG+
Sbjct: 492 PGNTFVISHDRWFLDRIATHILAFEGD 518
>pir||D69159 methyl coenzyme M reductase system, component A2 homolog -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2621521|gb|AAB84960.1| (AE000829) methyl coenzyme M
reductase system, component A2 homolog [Methanobacterium
thermoautotrophicum]
Length = 480
Score = 109 bits (270), Expect = 9e-23
Identities = 110/452 (24%), Positives = 211/452 (46%), Gaps = 40/452 (8%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
VK G V I G +G+GK+T + + +IP++ D +R + + L
Sbjct: 28 VKRGESVFITGRSGSGKSTLARAVTA-VIPSMM--GGEMDGTVRVMGRDT-----DSLTP 79
Query: 160 GEIRPVV-------KPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDREL 212
G++ V + Q+ L + + L+ + E+ ++ + +E+ +
Sbjct: 80 GDLAADVGYVFQNPESQFFTLNVNSEVSLGPDTLQLDKREERVEDALRRVGMEHKRHESV 139
Query: 213 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 272
LS GE QRVAIA+ L DEP+S LD + +++ L + K +++++H
Sbjct: 140 FNLSEGEKQRVAIASQLSMSPEILLMDEPTSNLDQGSTDDLFSILKNLRD--KTLILIDH 197
Query: 273 DLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGIN-EFLQGY-LKDENVRFRPYEIR-- 328
+ + D + VV E G+ + T N ++ EF + Y L+ + F
Sbjct: 198 RTYRVPEVFDRV-VVMDE----GMIVEETDTDNLLDPEFRERYGLRSPSPGFNQRSCGGR 252
Query: 329 ----FTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTF 384
F ++S + +++ ++ + G F+L+ ++ +GEV+G+ GPNG GKTT
Sbjct: 253 GLRPFFQVSTHPETKQDPVLRVMNISHTQGDFRLDGVNLDLWRGEVLGLTGPNGSGKTTL 312
Query: 385 VKMLAGVEEPTEGKVEWDLT---VAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL 441
+++ G+ EP G++ + T V P + + + E+ +D S+ +L
Sbjct: 313 ARLIVGLIEPEMGEIRVEGTAGLVMQDPDH-QLFMDTVKREITFGLDD---YSDGDVEDL 368
Query: 442 LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 501
L+ + + L +R+ LSGGE QR I+ L R D+ ++DEP+ +D++ ++ I
Sbjct: 369 LETMKLHQLMERHPHSLSGGEKQRTLISVYLFRKPDLIIMDEPTTGMDLDNMKRLAGWIG 428
Query: 502 HLMEKNEKTALV-VEHDVLMIDYVSDRLIVFE 532
L K A++ + HD+ + V+DR I+ +
Sbjct: 429 KL--KGMGVAMILISHDLEFLQMVADRTIMMD 458
>pir||B72417 sugar ABC transporter, ATP-binding protein - Thermotoga maritima
(strain MSB8) >gi|4980606|gb|AAD35209.1|AE001697_9
(AE001697) sugar ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 520
Score = 109 bits (270), Expect = 9e-23
Identities = 124/476 (26%), Positives = 215/476 (45%), Gaps = 65/476 (13%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE-----DNDSWDNVIRAFRGNELQNYF 154
V + +V ++G NG GK+T +KIL G L P+ E + + + + AF+ +
Sbjct: 37 VYENEIVSLIGENGAGKSTLIKILTGVLKPDAGEILVNGERVEFHSPVDAFKKG-ISVIH 95
Query: 155 ERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVL---DRE 211
+ L + V + + L +AV+G+ R L +VDE + + L+L D
Sbjct: 96 QELNLCDNMTVA--ENIFLAYEAVRGQKRTLSSRVDENYMYTRSKELLDLIGAKFSPDAL 153
Query: 212 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 271
+ L+ + Q V I AL+++ F DEP+S L + + ++ +I L + G +V+ V
Sbjct: 154 VRNLTTAQRQMVEICKALVKEPRIIFMDEPTSSLTVEETERLFEIIEMLKSRGISVVFVS 213
Query: 272 HDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTK 331
H L + +SD I VV + G K + + I + + G V F P+ I
Sbjct: 214 HRLDEVMRISDRI-VVMRDGKRIGELKKGEFDVDTIIKMMVG----REVEFFPHGIETRP 268
Query: 332 LSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV 391
++V +++ VK+ SF E+RKGEV+G G G G+T + ++ GV
Sbjct: 269 GEIALEVRN---LKWKDKVKNV-SF-------EVRKGEVLGFAGLVGAGRTETMLLVFGV 317
Query: 392 EEPTEG-------KVE-------WDLTVAYKPQYIKAE--------YEGTVYELLSKID- 428
+ G KVE + + P+ K + + V L KI
Sbjct: 318 NQKESGDIYVNGRKVEIKNPEDAIKMGIGLIPEDRKLQGLVLRMTVKDNIVLPSLKKISR 377
Query: 429 ---------SSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIY 479
+++ ++ K +K I + E+LSGG Q+V +A L +ADI
Sbjct: 378 WGLVLDERKEEEISEDYVKRLSIKTPSIYQI----TENLSGGNQQKVVLAKWLATNADIL 433
Query: 480 LLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV-FEGE 534
+ DEP+ +DV + + R IR L + K +++ ++ I +SDR++V +EGE
Sbjct: 434 IFDEPTRGIDVGAKAEIHRMIRELAAQG-KAVIMISSELPEILNLSDRIVVMWEGE 488
>sp|P45127|YJJK_HAEIN ABC TRANSPORTER ATP-BINDING PROTEIN HI1252 >gi|1074699|pir||G64169
hypothetical protein HI1252 - Haemophilus influenzae
(strain Rd KW20) >gi|1574184|gb|AAC22902.1| (U32805) ABC
transporter, ATP-binding protein [Haemophilus influenzae
Rd]
Length = 556
Score = 108 bits (267), Expect = 2e-22
Identities = 132/513 (25%), Positives = 220/513 (42%), Gaps = 103/513 (20%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 162
G +G++G NG GK+T ++I+AG V + F G ++
Sbjct: 33 GAKIGVLGLNGAGKSTLLRIMAG---------------VDKEFEGEARPQPGIKIGYLPQ 77
Query: 163 RPVVKPQYV--DLLPKAVKGKVRELLKKVDEV--------GKFEEVVKEL---------- 202
P ++PQ + + +AV +V+ L ++DEV F+++ E
Sbjct: 78 EPKLEPQQTVREAVEEAVS-EVKNALTRLDEVYALYADPDADFDKLAAEQANLEAIIQAH 136
Query: 203 ---ELENVLDR------------ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDI 247
L+N L+R ++ LSGGE +RVA+ LL K DEP+++LD
Sbjct: 137 DGHNLDNQLERAADALRLPDWDAKIEHLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDA 196
Query: 248 RQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSD-VIHVVYGE----PGVYGIFSKPK- 301
VA + R L + V+ + HD LD ++ ++ + GE G Y + + K
Sbjct: 197 ES---VAWLERFLHDYEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKE 253
Query: 302 -------GTRNGIN-------EFLQGYLKDENVRFRPYEIRFTKLSERVDVER------- 340
T N E+++ K + + RF +L+ +R
Sbjct: 254 KRLEQEQATENARQKSIAKELEWVRQNPKGRQAKSKARMARFDELNSGEYQKRNETNELF 313
Query: 341 --------ETLVEYPRLVKDYGSFKLEVEPG-EIRKGEVIGIVGPNGIGKTTFVKMLAGV 391
+ ++E L K YG L + I KG ++GI+G NG GK+T +ML+G
Sbjct: 314 IPPGPRLGDKVIEVQNLTKSYGDRTLIDDLSFSIPKGAIVGIIGANGAGKSTLFRMLSGQ 373
Query: 392 EEPTEGKVEWDLTV--AYKPQYIKA-EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 448
E+P G V TV A Q+ + + + TV+E +S NF + +G
Sbjct: 374 EQPDSGSVTMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTIGNF-EIPSRAYVGRF 432
Query: 449 DL----YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 504
+ + V +LSGGE R+ +A L R ++ LLDEP+ LDVE A+ AI
Sbjct: 433 NFKGVDQQKRVGELSGGERGRLHLAKLLQRGGNVLLLDEPTNDLDVETLRALENAILEF- 491
Query: 505 EKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGR 537
A+V+ HD +D ++ ++ + G+ G+
Sbjct: 492 ---PGCAMVISHDRWFLDRIATHILDY-GDEGK 520
>pir||F81781 ABC transporter ATP-binding protein NMA2101 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7380726|emb|CAB85317.1| (AL162758) ABC transporter
ATP-binding protein [Neisseria meningitidis Z2491]
Length = 558
Score = 108 bits (267), Expect = 2e-22
Identities = 131/520 (25%), Positives = 218/520 (41%), Gaps = 120/520 (23%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 162
G +G++G NG GK+T ++I+AG V + F G E + G I
Sbjct: 33 GAKIGLLGLNGAGKSTVLRIMAG---------------VDKEFEG-------EAVPMGGI 70
Query: 163 RPVVKPQYVDLLP-KAVK-------GKVRELLKKVDEV------------------GKFE 196
+ PQ +L P K V+ G+V K+++EV G+ E
Sbjct: 71 KIGYLPQEPELDPEKTVREEVESGLGEVAAAQKRLEEVYAEYANPDADFDALAEEQGRLE 130
Query: 197 EVVK---------ELELENVLDR--------ELHQLSGGELQRVAIAAALLRKAHFYFFD 239
++ E ELE D ++ LSGGE +RVA+ LL K D
Sbjct: 131 AIIAAGSSTGGGAEHELEIAADALRLPEWDAKIDNLSGGEKRRVALCKLLLSKPDMLLLD 190
Query: 240 EPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV---YGEP--GVY 294
EP+++LD + + + R V+ V HD LD ++ I + +G P G Y
Sbjct: 191 EPTNHLDAESVEWLEQFLVRFPG---TVVAVTHDRYFLDNAAEWILELDRGHGIPWKGNY 247
Query: 295 GIFSKPKGTR------------NGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERET 342
+ + K R + + L+ ++ R + R + E + E +
Sbjct: 248 SSWLEQKEKRLENEAKSEAARVKAMKQELEWVRQNAKGRQAKSKARLARFEEMSNYEYQK 307
Query: 343 ------------------LVEYPRLVKDYGSFKLEVEPG-EIRKGEVIGIVGPNGIGKTT 383
++E+ + K +G L + ++ G ++GI+GPNG GK+T
Sbjct: 308 RNETQEIFIPVAERLGNEVIEFVNVSKSFGDKVLIDDLSFKVPAGAIVGIIGPNGAGKST 367
Query: 384 FVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG-----TVYELLSKIDSSKLNSNFYK 438
KM+AG E+P G+V+ TV K I EG TV++ +++ L ++
Sbjct: 368 LFKMIAGKEQPDSGEVKIGQTV--KMSLIDQSREGLQNDKTVFDNIAE-GRDILQVGQFE 424
Query: 439 TELLKPLGIIDL----YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 494
+ LG + + LSGGE R+ +A TLL ++ LLDEPS LDVE
Sbjct: 425 IPARQYLGRFNFKGSDQSKITGQLSGGERGRLHLAKTLLGGGNVLLLDEPSNDLDVE--- 481
Query: 495 AVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGE 534
RA+ + + + +V+ HD +D ++ ++ EG+
Sbjct: 482 -TLRALEDALLEFAGSVMVISHDRWFLDRIATHILACEGD 520
>pir||H81205 ABC transporter, ATP-binding protein NMB0387 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225608|gb|AAF40827.1| (AE002394) ABC transporter,
ATP-binding protein [Neisseria meningitidis MC58]
Length = 558
Score = 107 bits (265), Expect = 3e-22
Identities = 130/520 (25%), Positives = 218/520 (41%), Gaps = 120/520 (23%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 162
G +G++G NG GK+T ++I+AG V + F G E + G I
Sbjct: 33 GAKIGLLGLNGAGKSTVLRIMAG---------------VDKEFEG-------EAVPMGGI 70
Query: 163 RPVVKPQYVDLLP-KAVK-------GKVRELLKKVDEV------------------GKFE 196
+ PQ +L P K V+ G+V K+++EV G+ E
Sbjct: 71 KIGYLPQEPELDPEKTVREEVESGLGEVAAAQKRLEEVYAEYANPDADFDALAEEQGRLE 130
Query: 197 EVVK---------ELELENVLDR--------ELHQLSGGELQRVAIAAALLRKAHFYFFD 239
++ E ELE D ++ LSGGE +RVA+ LL K D
Sbjct: 131 AIIAAGSSTGGGAEHELEIAADALRLPEWDAKIDNLSGGEKRRVALCKLLLSKPDMLLLD 190
Query: 240 EPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV---YGEP--GVY 294
EP+++LD + + + R V+ V HD LD ++ I + +G P G Y
Sbjct: 191 EPTNHLDAESVEWLEQFLVRFPG---TVVAVTHDRYFLDNAAEWILELDRGHGIPWKGNY 247
Query: 295 GIFSKPKGTR------------NGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERET 342
+ + K R + + L+ ++ R + R + E + E +
Sbjct: 248 SSWLEQKEKRLENEAKSEAARVKAMKQELEWVRQNAKGRQAKSKARLARFEEMSNYEYQK 307
Query: 343 ------------------LVEYPRLVKDYGSFKLEVEPG-EIRKGEVIGIVGPNGIGKTT 383
++E+ + K +G L + ++ G ++GI+GPNG GK+T
Sbjct: 308 RNETQEIFIPVAERLGNEVIEFVNVSKSFGDKVLIDDLSFKVPAGAIVGIIGPNGAGKST 367
Query: 384 FVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG-----TVYELLSKIDSSKLNSNFYK 438
KM++G E+P G+V+ TV K I EG TV++ +++ L ++
Sbjct: 368 LFKMISGKEQPDSGEVKIGQTV--KMSLIDQSREGLQNDKTVFDNIAE-GRDILQVGQFE 424
Query: 439 TELLKPLGIIDL----YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 494
+ LG + + LSGGE R+ +A TLL ++ LLDEPS LDVE
Sbjct: 425 IPARQYLGRFNFKGSDQSKIAGQLSGGERGRLHLAKTLLSGGNVLLLDEPSNDLDVE--- 481
Query: 495 AVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGE 534
RA+ + + + +V+ HD +D ++ ++ EG+
Sbjct: 482 -TLRALEDALLEFAGSVMVISHDRWFLDRIATHILACEGD 520
>sp|P37797|YJJK_ECOLI ABC TRANSPORTER ATP-BINDING PROTEIN YJJK >gi|7445921|pir||F65254
ABC transporter in nadR-slt intergenic region -
Escherichia coli (strain K-12)
>gi|2367384|gb|AAC77344.1| (AE000509) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 555
Score = 105 bits (259), Expect = 2e-21
Identities = 125/513 (24%), Positives = 221/513 (42%), Gaps = 108/513 (21%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 162
G +G++G NG GK+T ++I+AG + + G ++
Sbjct: 32 GAKIGVLGLNGAGKSTLLRIMAG---------------IDKDIEGEARPQPDIKIGYLPQ 76
Query: 163 RPVVKPQYV--DLLPKAVKGKVRELLKKVDEV------------------GKFEEVVK-- 200
P + P++ + + +AV +V LK++DEV G+ EE+++
Sbjct: 77 EPQLNPEHTVRESIEEAVS-EVVNALKRLDEVYALYADPDADFDKLAAEQGRLEEIIQAH 135
Query: 201 -----ELELENVLDR--------ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDI 247
++LE D ++ LSGGE +RVA+ LL K DEP+++LD
Sbjct: 136 DGHNLNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDA 195
Query: 248 RQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSD-VIHVVYGE----PGVYGIFSKPKG 302
VA + R L + V+ + HD LD ++ ++ + GE G Y + + K
Sbjct: 196 ES---VAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKD 252
Query: 303 TR-------------------NGINEFLQGYLKDENVRFRPYE-IRFTKLSERVDVER-- 340
R + + +G R +E + T+ +R +
Sbjct: 253 QRLAQEASQEAARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQKRNETNELF 312
Query: 341 --------ETLVEYPRLVKDYGSFKLEVEPG-EIRKGEVIGIVGPNGIGKTTFVKMLAGV 391
+ ++E L K YG L + I KG ++GI+GPNG GK+T +M++G
Sbjct: 313 IPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQ 372
Query: 392 EEPTEGKVEWDLTV--AYKPQYIKA-EYEGTVYELLS------KIDSSKLNSNFYKTEL- 441
E+P G + TV A Q+ + + TV+E +S KI ++++ S Y
Sbjct: 373 EQPDSGTITLGETVKLASVDQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFN 432
Query: 442 LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 501
K + + V +LSGGE R+ +A L ++ LLDEP+ LD+E RA+
Sbjct: 433 FKGVD----QGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDIE----TLRALE 484
Query: 502 HLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGE 534
+ + + A+V+ HD +D ++ ++ ++ E
Sbjct: 485 NALLEFPGCAMVISHDRWFLDRIATHILDYQDE 517
>pir||S56615 hypothetical protein f579 - Escherichia coli
>gi|537231|gb|AAA97287.1| (U14003) ORF_f579 [Escherichia
coli]
Length = 579
Score = 105 bits (259), Expect = 2e-21
Identities = 125/513 (24%), Positives = 221/513 (42%), Gaps = 108/513 (21%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 162
G +G++G NG GK+T ++I+AG + + G ++
Sbjct: 32 GAKIGVLGLNGAGKSTLLRIMAG---------------IDKDIEGEARPQPDIKIGYLPQ 76
Query: 163 RPVVKPQYV--DLLPKAVKGKVRELLKKVDEV------------------GKFEEVVK-- 200
P + P++ + + +AV +V LK++DEV G+ EE+++
Sbjct: 77 EPQLNPEHTVRESIEEAVS-EVVNALKRLDEVYALYADPDADFDKLAAEQGRLEEIIQAH 135
Query: 201 -----ELELENVLDR--------ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDI 247
++LE D ++ LSGGE +RVA+ LL K DEP+++LD
Sbjct: 136 DGHNLNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDA 195
Query: 248 RQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSD-VIHVVYGE----PGVYGIFSKPKG 302
VA + R L + V+ + HD LD ++ ++ + GE G Y + + K
Sbjct: 196 ES---VAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKD 252
Query: 303 TR-------------------NGINEFLQGYLKDENVRFRPYE-IRFTKLSERVDVER-- 340
R + + +G R +E + T+ +R +
Sbjct: 253 QRLAQEASQEAARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQKRNETNELF 312
Query: 341 --------ETLVEYPRLVKDYGSFKLEVEPG-EIRKGEVIGIVGPNGIGKTTFVKMLAGV 391
+ ++E L K YG L + I KG ++GI+GPNG GK+T +M++G
Sbjct: 313 IPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQ 372
Query: 392 EEPTEGKVEWDLTV--AYKPQYIKA-EYEGTVYELLS------KIDSSKLNSNFYKTEL- 441
E+P G + TV A Q+ + + TV+E +S KI ++++ S Y
Sbjct: 373 EQPDSGTITLGETVKLASVDQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFN 432
Query: 442 LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 501
K + + V +LSGGE R+ +A L ++ LLDEP+ LD+E RA+
Sbjct: 433 FKGVD----QGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDIE----TLRALE 484
Query: 502 HLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGE 534
+ + + A+V+ HD +D ++ ++ ++ E
Sbjct: 485 NALLEFPGCAMVISHDRWFLDRIATHILDYQDE 517
>pir||E71525 probable ABC transporter protein ATPase - Chlamydia trachomatis
(serotype D, strain UW3/Cx) >gi|3328769|gb|AAC67943.1|
(AE001308) ABC Transporter Protein ATPase [Chlamydia
trachomatis]
Length = 528
Score = 104 bits (257), Expect = 3e-21
Identities = 128/502 (25%), Positives = 231/502 (45%), Gaps = 87/502 (17%)
Query: 99 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN------------LCEDNDSWDNVIR--- 143
+ G G+ GPNG GK+T +KI+ G + P+ L ++ DS+ +VI
Sbjct: 24 VFNPGNRYGLTGPNGAGKSTLLKIITGLVEPSRGTISLPKKIGILRQNIDSFGDVIVLDC 83
Query: 144 AFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELE 203
GN +E ++ + + ++ D + + G++ E++ + D + E +EL
Sbjct: 84 VIMGNS--RLWEAMQRRDA--LYAEEFTDAIGMEL-GEIEEIIGEEDGY-RAESEAEELL 137
Query: 204 L-----ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 258
L E +++ + RV + AL DEP+++LD+ + ++
Sbjct: 138 LGIGIPEEFFSQKMATIPLDLQFRVLLCQALFGHPEALLLDEPTNHLDLHSINWLGSFLK 197
Query: 259 RLANEGKAVLVVEHDLAVLD----YLSDVIH---VVYGEPGVYG---------------- 295
+ V+VV HD L+ +++D+ + ++Y PG Y
Sbjct: 198 ---DYNGTVIVVSHDRHFLNTITTHIADIDYDTIIIY--PGNYDAMVEMKTASREQEKAD 252
Query: 296 IFSKPKGTRNGINEFLQGY---LKDENVRFRPYEIRFTKLSE--RVDVERETLVEYPRLV 350
I SK K + EF+ + + V+ R EI+ + E + +++R + +P
Sbjct: 253 IKSKEKKIAQ-LREFVAKFGAGSRASQVQSRLREIKKLQPQELKKSNIQRP-YIRFPVSD 310
Query: 351 KDYGSFKLEVE---------------PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 395
K G +E EI +G+ IG++G NG+GKTT +K+LAGVE+P+
Sbjct: 311 KASGKVVFSIEGISKTYDADPLFKPFSLEIYQGDKIGVIGNNGLGKTTLMKLLAGVEQPS 370
Query: 396 EGKVEWDLTVA--YKPQ----YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIID 449
+G+V+ VA Y PQ +K E T++E L + + + ++ L K L D
Sbjct: 371 QGQVKLGHNVAFSYFPQNHADILKDCGEETLFEWLRR-RKTGITDQEVRSVLGKMLFGGD 429
Query: 450 LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 509
+ V+ LSGGE R+ +A +L + ++ +LDE + +LD+E A++ AI
Sbjct: 430 DAFKQVKALSGGETARLLMAGMMLENHNMLILDEANNHLDLESVSALAWAINDY----PG 485
Query: 510 TALVVEHDVLMIDYVSDRLIVF 531
TA+ V HD +ID + +L++F
Sbjct: 486 TAIFVSHDRTLIDECATKLLIF 507
>pir||E83071 probable ATP-binding component of ABC transporter PA4595 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9950844|gb|AAG07983.1|AE004873_5 (AE004873) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 554
Score = 103 bits (255), Expect = 5e-21
Identities = 125/510 (24%), Positives = 213/510 (41%), Gaps = 102/510 (20%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 162
G +G++G NG GK+T ++I+AG + + R G + Y +
Sbjct: 32 GAKIGVLGLNGAGKSTLLRIMAGV--------DTEIEGEARPMPGINV-GYLPQ------ 76
Query: 163 RPVVKPQYV--DLLPKAVKGKVRELLKKVDEV------------------GKFEEVVKEL 202
P + PQ D++ +AV G++++ ++DEV K E +++
Sbjct: 77 EPKLDPQATVRDIVEEAV-GQIKQAQARLDEVYAAYAEPDADFDALAAEQAKLEAILQAS 135
Query: 203 ELENV---------------LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDI 247
+ N+ D ++ LSGGE +RVA+ LL DEP+++LD
Sbjct: 136 DGHNLERQLEVAADALRLPPWDAKVEHLSGGEKRRVALCRLLLSAPDMLLLDEPTNHLDA 195
Query: 248 RQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV---YGEP--GVYGIFSKPKG 302
VA + L + V+ + HD LD ++ I + +G P G Y + + K
Sbjct: 196 DS---VAWLEHFLHDFPGTVVAITHDRYFLDNVAGWILELDRGHGIPFEGNYSGWLESKA 252
Query: 303 TR-------------------NGINEFLQGYLKDENVRFRPYEI----RFTKLSERVDVE 339
R + + +G R + +E F K SE ++
Sbjct: 253 ARLAQEAKQEASHAKAMKAELEWVRQGAKGRQAKSKARLQRFEELQSQEFQKRSETNEIY 312
Query: 340 -------RETLVEYPRLVKDYGSFKLEVEPG-EIRKGEVIGIVGPNGIGKTTFVKMLAGV 391
+ ++E + K YG L I KG ++G++G NG GK+T +ML G
Sbjct: 313 IPAGPRLGDKVIELHNVTKGYGDRVLIDNLSLSIPKGAIVGVIGGNGAGKSTLFRMLTGK 372
Query: 392 EEPTEGKVEWDLTV---AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 448
E+P G +E TV + E TV+E +S ++ Y+ +G
Sbjct: 373 EQPDSGTIEIGETVQIASVDQSRDSLEGNKTVWEQVSD-GFEQIKIGNYEVPSRSYVGRF 431
Query: 449 DL----YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 504
+ + V+DLSGGE R+ +A TL + ++ LLDEPS LDVE RA+ +
Sbjct: 432 NFKGADQQKFVKDLSGGERGRLHLALTLKQGGNVLLLDEPSNDLDVE----TLRALEEAL 487
Query: 505 EKNEKTALVVEHDVLMIDYVSDRLIVFEGE 534
A+V+ HD +D ++ ++ +E +
Sbjct: 488 LDFPGAAIVISHDRWFLDRIATHILSYEDD 517
>gb|AAB85511.1| (AE000874) methyl coenzyme M reductase system, component A2
[Methanobacterium thermoautotrophicum]
Length = 540
Score = 103 bits (254), Expect = 6e-21
Identities = 124/504 (24%), Positives = 213/504 (41%), Gaps = 96/504 (19%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKIL---------AGQLIPNLC------------------ 132
+ +G V+GI+G +G GK+ + +L +G++I N+
Sbjct: 36 IDEGKVLGILGRSGAGKSVLINMLRGMKEYRPDSGRVIYNVAICPECLRVEPPSFDGRNC 95
Query: 133 --------EDNDSWD---NVIRAFRGN---ELQNYFERLKNGEIRPVVKPQYVDLLPKAV 178
E+ D W+ + A R LQ F ++ + V +L +A
Sbjct: 96 SCGSSFALEEVDFWNCDKKIFAAVRRRIAIMLQRTFALYEDDTVIDNVIKSMPELEYEAA 155
Query: 179 KGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFF 238
+ ELL+ + + ++L SGGE QRV +A L ++ +
Sbjct: 156 LYRALELLEMTQMGHRITHIARDL-------------SGGEKQRVVLARQLAKEPMLFLA 202
Query: 239 DEPSSYLDIRQ-RLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIF 297
DEP+ LD + L ++ + ++G +++ H V+ LSD + ++ E G
Sbjct: 203 DEPTGTLDPQTAELIHDALLEGVKDKGITMIITSHWPEVMSDLSD--YAIWIEKGEIVEE 260
Query: 298 SKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFK 357
P + F++ E + E K+ VDV++ +VK
Sbjct: 261 GDPDTV---VARFMEQVPAPEKAKEFEQENPIIKM---VDVKKHYYSIDRGVVKAVDGVD 314
Query: 358 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV------EW-DLT------ 404
L V +GE+ G+VG +G GKTT +++ G+ EP+ GKV EW D+T
Sbjct: 315 LTVY-----EGEIFGVVGLSGAGKTTLSRIIIGITEPSSGKVCVRLGDEWIDMTEKGPLG 369
Query: 405 ---VAYKPQYIKAEYE----GTVYELLSKIDSSKLNSNFYKTE---LLKPLGIIDLYDRN 454
V + EY V L++ S +L F K +LK +G D Y +
Sbjct: 370 RGRVTPYLGILHQEYSLYPHRDVLGNLTEAISLELPDEFAKMRAVYVLKTVGFDDKYAES 429
Query: 455 V-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 509
+ ++LSGGE RVA+A L+++ I +LDEP+ +D R+ V+ +I E+ +
Sbjct: 430 ILNKYPDELSGGERHRVALAQVLIKEPRIIILDEPTGTMDPITRVQVTDSILKAREELNQ 489
Query: 510 TALVVEHDVLMIDYVSDRLIVFEG 533
T L++ HD+ + V DR + G
Sbjct: 490 TFLIISHDMDFVLDVCDRASLMRG 513
>pir||E72129 ABC transporter protein ATPase - Chlamydophila pneumoniae (strain
CWL029) >gi|4376275|gb|AAD18176.1| (AE001587) ABC
Transporter Protein ATPase [Chlamydophila pneumoniae
CWL029] >gi|8163494|gb|AAF73702.1| (AE002234) ABC
transporter, ATP-binding protein [Chlamydophila
pneumoniae AR39] >gi|8978398|dbj|BAA98235.1| (AP002545)
ABC transporter protein ATPase [Chlamydophila pneumoniae
J138]
Length = 530
Score = 102 bits (253), Expect = 8e-21
Identities = 131/508 (25%), Positives = 237/508 (45%), Gaps = 97/508 (19%)
Query: 99 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN------------LCEDNDSWDNVIR--- 143
+ G G+ GPNG GK+T +KI+ G + P L ++ DS+ +
Sbjct: 24 VFNPGNCYGLTGPNGAGKSTLLKIIMGMIEPTRGSISLPKKVGILRQNIDSFHDTTVLDC 83
Query: 144 AFRGN-ELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEV---GKFEEVV 199
GN L +R N ++ ++ D + + G++ E++ + + + EE++
Sbjct: 84 VIMGNTRLWEALQRRDNLYLQ-----EFTDAIGMEL-GEIEEIIGEENGYRADSEAEELL 137
Query: 200 KELELEN-VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 258
+ + N + D+++ + RV + AL DEP+++LD+ + ++
Sbjct: 138 TGIGIPNEMFDKKMAMIPIDLQFRVLLCQALFGHPEALLLDEPTNHLDLYSINWLGNFLK 197
Query: 259 RLANEGKAVLVVEHDLAVLD----YLSDVIH---VVYGEPGVYG---------------- 295
EG V+VV HD L+ +++D+ + ++Y PG Y
Sbjct: 198 DY--EG-TVIVVSHDRHFLNTITTHIADIDYDTIIIY--PGNYDDMVEMKTASREQEKAD 252
Query: 296 IFSKPKGTRNGINEFLQGY-----------------------LKDENVRFRPYEIRFTKL 332
I SK K + EF+ + LK N++ RPY IRF L
Sbjct: 253 IKSKEKKISQ-LKEFVAKFGAGSRASQVQSRLREIKKLQPQELKKSNIQ-RPY-IRFP-L 308
Query: 333 SERVDVERETLVEYPRLVKDYGSFKLEVEPG--EIRKGEVIGIVGPNGIGKTTFVKMLAG 390
S++ + ++ + KDYG ++ + P EI +G+ +GI+G NG+GKTT +K+LAG
Sbjct: 309 SDKSS--GKVVLSLEAITKDYGDHQV-IHPFSLEIYQGDKLGIIGNNGLGKTTLMKLLAG 365
Query: 391 VEEPTEG--KVEWDLTVAYKPQY---IKAEY-EGTVYELLSKIDSSKLNSNFYKTELLKP 444
VE P+ G K+ +Y PQ + A+ + T++E L + + +N ++ L K
Sbjct: 366 VEAPSSGSIKLGHQAICSYFPQNHSDVLADCGQETLFEWL-RNRKTGINDQEIRSVLGKM 424
Query: 445 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 504
L D + ++ LSGGE R+ +A +L + ++ +LDE + +LD+E A+S AI
Sbjct: 425 LFGGDDAFKQIQALSGGETARLLMAGMMLENHNVLILDEANNHLDLESVSALSWAINDY- 483
Query: 505 EKNEKTALVVEHDVLMIDYVSDRLIVFE 532
+ TA+ V HD +I + +L++F+
Sbjct: 484 ---KGTAIFVSHDRGLIQDCATKLLIFD 508
>pir||A64455 methyl coenzyme M reductase (EC 1.8.-.-) component A2 -
Methanococcus jannaschii >gi|1592327|gb|AAB99247.1|
(U67565) methyl coenzyme M reductase system, component
A2 (atwA) [Methanococcus jannaschii]
Length = 539
Score = 102 bits (253), Expect = 8e-21
Identities = 126/498 (25%), Positives = 224/498 (44%), Gaps = 93/498 (18%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAG---------QLIPNL--CEDNDSWDNVIRAFR-- 146
+++G +GI+G +G GK+ + +L G Q+I ++ CE D +A
Sbjct: 31 LEEGESLGILGKSGAGKSVLLHMLRGMDGYEPTEGQIIYHVSYCEKCGYVDVPSKAGTPC 90
Query: 147 ---GNELQN----------YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVG 193
GNEL+ Y LK +I +++ + K V + E L + G
Sbjct: 91 KKCGNELKKIEVDFWNDKKYTYNLKR-KIAIMLQRTFALYGEKTVLENILEALHQAGYEG 149
Query: 194 KFE-----EVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 248
K +++K ++LE+ + LSGGE QRV +A + ++ + DEP+ LD +
Sbjct: 150 KEAIDMALKLIKMVKLEHRITHIARDLSGGEKQRVVLARQIAKEPFIFLADEPTGTLDPQ 209
Query: 249 QRLKVARVIRRLANEGKAVLVV-EHDLAVLDYLSD-VIHVVYGEPGVYGIFSKPKGTRNG 306
V ++ L + K L++ H V+ L++ I + GE + G +
Sbjct: 210 TAKLVHSALKELVIKNKISLILTSHWPEVIAELTEKAIWLDKGEIIMEGT------SEEV 263
Query: 307 INEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPG--- 363
+N+F+ E V+ F K V++ +E +++ + K Y S + V
Sbjct: 264 VNKFM------ETVK------EFKKPETEVEI-KEDIIKLENVSKHYCSVERGVIKAVDN 310
Query: 364 ---EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV------EW-DLTVAYKP---- 409
IR+ E+ G+VG +G GKTT K++AGV P++GK EW D+T KP
Sbjct: 311 VTLNIREREIFGLVGTSGAGKTTLAKIIAGVLPPSKGKYWFRVGDEWVDMT---KPGPMG 367
Query: 410 -----QYIKAEYEG-------TVYELLSKIDSSKLNSNFYKTELLKPLGII--------D 449
+YI ++ T+ E L++ +L F + + + L + +
Sbjct: 368 RGRAKRYIGILFQEYALYPHRTILENLTEAIGLELPDEFARMKAVYTLVSVGFSEEEAEE 427
Query: 450 LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 509
+ D+ +LS GE R A+A L+++ + +LDEP+ +D R V+ +I + E+
Sbjct: 428 ILDKYPHELSVGERHRCALAQVLIKEPRVVILDEPTGTMDPITRNTVAESIHKSRIELEQ 487
Query: 510 TALVVEHDVLMIDYVSDR 527
T ++V HD+ + V DR
Sbjct: 488 TYIIVSHDMDFVLNVCDR 505
>pir||B36921 methyl coenzyme M reductase (EC 1.8.-.-) component A2 -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|385924|gb|AAB26631.1| (S61233) methylcoenzyme M
reductase system component A2 [Methanobacterium
thermoautotrophicum, delta H, Peptide, 530 aa]
Length = 530
Score = 102 bits (252), Expect = 1e-20
Identities = 127/501 (25%), Positives = 217/501 (42%), Gaps = 90/501 (17%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKIL---------AGQLIPNLCEDNDSWDNVIRAFRGNEL 150
+ +G V+GI+G +G GK+ + +L +G++I N+ + +F G
Sbjct: 26 IDEGKVLGILGRSGAGKSVLINMLRGMKEYRPDSGRVIYNVAICPECLRVEPPSFDG--- 82
Query: 151 QNYFERLKNGEIRPVVKPQYVDL------LPKAVKGKVRELLKKV----DEVGKFEEVVK 200
+N + VD + AV+ ++ +L++ ++ + V+K
Sbjct: 83 -------RNCSCGSSFALEEVDFWNCDKKIFAAVRRRIAIMLQRTFALYEDDTVIDNVIK 135
Query: 201 ---ELELENVLDRELH----------------QLSGGELQRVAIAAALLRKAHFYFFDEP 241
ELE E L R L LSGGE QRV +A L ++ + DEP
Sbjct: 136 SMPELEYEAALYRALELLEMSQMGHRITHIARDLSGGEKQRVVLARQLAKEPMLFLADEP 195
Query: 242 SSYLDIR-QRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP 300
+ LD + L ++ + ++G +++ H V+ LSD + ++ E G P
Sbjct: 196 TGTLDPQTAELIHDALLEGVKDKGITMIITSHWPEVMSDLSD--YAIWIEKGEIVEEGDP 253
Query: 301 KGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEV 360
+ F++ E + E K+ VDV++ +VK L V
Sbjct: 254 DTV---VARFMEQVPAPEKAKEFEQENPIIKM---VDVKKHYYSIDRGVVKAVDGVDLTV 307
Query: 361 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV------EW-DLT--------- 404
+GE+ G+VG +G GKTT +++ G+ EP+ GKV EW D+T
Sbjct: 308 -----YEGEIFGVVGLSGAGKTTLSRIIIGITEPSSGKVCVRLGDEWIDMTEKGPLGRGR 362
Query: 405 VAYKPQYIKAEY----EGTVYELLSKIDSSKLNSNFYKTE---LLKPLGIIDLYDRNV-- 455
V + EY V L++ S +L F K +LK +G D Y ++
Sbjct: 363 VTPYLGILHQEYSLYPHRDVLGNLTEAISLELPDEFAKMRAVYVLKTVGFDDKYAESILN 422
Query: 456 ---EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 512
++LSGGE RVA+A L+++ I +LDEP+ +D R+ V+ +I E+ +T L
Sbjct: 423 KYPDELSGGERHRVALAQVLIKEPRIIILDEPTGTMDPITRVQVTDSILKAREELNQTFL 482
Query: 513 VVEHDVLMIDYVSDRLIVFEG 533
++ HD+ + V DR + G
Sbjct: 483 IISHDMDFVLDVCDRASLMRG 503
>gb|AAG19353.1| (AE005030) spermidine/putrescine ABC transporter ATP-binding; PotA1
[Halobacterium sp. NRC-1]
Length = 377
Score = 102 bits (252), Expect = 1e-20
Identities = 70/208 (33%), Positives = 116/208 (55%), Gaps = 18/208 (8%)
Query: 341 ETLVEYPRLVKDYGSFKLEVEPG-EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
+T++E + K+YG+ + +R+GE++ ++GP+G GKTT ++MLAG+E PT G +
Sbjct: 24 DTVLELDGVTKEYGAETAVRDLSLSVREGELLTLLGPSGCGKTTTLRMLAGLERPTGGTI 83
Query: 400 EWDLT-VAYKPQYIKAEYE--GTVYELLSKIDSSKLNSN--FYKT------------ELL 442
E D VA ++ AE G V++ + + N F T E+L
Sbjct: 84 ELDAQRVAGPDTFVAAEDREIGIVFQDFALFPHLSVAENVAFGLTDRDEDATAARVDEML 143
Query: 443 KPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 502
+ + ++ DR+V+ LSGG+ QRVA+A +L + DI LLDEP + LDV R+ + +R
Sbjct: 144 ALVDMPEMGDRSVDQLSGGQQQRVAVARSLAPEPDILLLDEPFSNLDVRLRVEMREEVRR 203
Query: 503 LMEKNEKTALVVEHDVLMIDYVSDRLIV 530
++++ TA+ V HD +SDR+ V
Sbjct: 204 ILKEAGVTAVSVTHDQEEALSISDRVAV 231
>gb|AAA72361.1| (L11748) methyl coenzyme M reductase system component A2
[Methanobacterium thermoautotrophicum]
Length = 540
Score = 102 bits (252), Expect = 1e-20
Identities = 127/501 (25%), Positives = 217/501 (42%), Gaps = 90/501 (17%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKIL---------AGQLIPNLCEDNDSWDNVIRAFRGNEL 150
+ +G V+GI+G +G GK+ + +L +G++I N+ + +F G
Sbjct: 36 IDEGKVLGILGRSGAGKSVLINMLRGMKEYRPDSGRVIYNVAICPECLRVEPPSFDG--- 92
Query: 151 QNYFERLKNGEIRPVVKPQYVDL------LPKAVKGKVRELLKKV----DEVGKFEEVVK 200
+N + VD + AV+ ++ +L++ ++ + V+K
Sbjct: 93 -------RNCSCGSSFALEEVDFWNCDKKIFAAVRRRIAIMLQRTFALYEDDTVIDNVIK 145
Query: 201 ---ELELENVLDRELH----------------QLSGGELQRVAIAAALLRKAHFYFFDEP 241
ELE E L R L LSGGE QRV +A L ++ + DEP
Sbjct: 146 SMPELEYEAALYRALELLEMSQMGHRITHIARDLSGGEKQRVVLARQLAKEPMLFLADEP 205
Query: 242 SSYLDIR-QRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP 300
+ LD + L ++ + ++G +++ H V+ LSD + ++ E G P
Sbjct: 206 TGTLDPQTAELIHDALLEGVKDKGITMIITSHWPEVMSDLSD--YAIWIEKGEIVEEGDP 263
Query: 301 KGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEV 360
+ F++ E + E K+ VDV++ +VK L V
Sbjct: 264 DTV---VARFMEQVPAPEKAKEFEQENPIIKM---VDVKKHYYSIDRGVVKAVDGVDLTV 317
Query: 361 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV------EW-DLT--------- 404
+GE+ G+VG +G GKTT +++ G+ EP+ GKV EW D+T
Sbjct: 318 -----YEGEIFGVVGLSGAGKTTLSRIIIGITEPSSGKVCVRLGDEWIDMTEKGPLGRGR 372
Query: 405 VAYKPQYIKAEY----EGTVYELLSKIDSSKLNSNFYKTE---LLKPLGIIDLYDRNV-- 455
V + EY V L++ S +L F K +LK +G D Y ++
Sbjct: 373 VTPYLGILHQEYSLYPHRDVLGNLTEAISLELPDEFAKMRAVYVLKTVGFDDKYAESILN 432
Query: 456 ---EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 512
++LSGGE RVA+A L+++ I +LDEP+ +D R+ V+ +I E+ +T L
Sbjct: 433 KYPDELSGGERHRVALAQVLIKEPRIIILDEPTGTMDPITRVQVTDSILKAREELNQTFL 492
Query: 513 VVEHDVLMIDYVSDRLIVFEG 533
++ HD+ + V DR + G
Sbjct: 493 IISHDMDFVLDVCDRASLMRG 513
>pir||D72415 zinc ABC transporter, ATP-binding protein - Thermotoga maritima
(strain MSB8) >gi|4980616|gb|AAD35218.1|AE001698_7
(AE001698) zinc ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 240
Score = 101 bits (249), Expect = 2e-20
Identities = 61/167 (36%), Positives = 94/167 (55%), Gaps = 16/167 (9%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQY--IKAEYEGTVYE 422
+ +GE +GI+GPNG GKTT V++L G + EGKVE + Y PQ ++ E+ TV E
Sbjct: 26 VEEGEFVGIIGPNGAGKTTLVRILVGDIKNYEGKVEVRGKIGYLPQLHQVQREFPITVKE 85
Query: 423 LLS--------KIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLR 474
+ KID K+ S LK +GI+ + +++LSGGE QR+++A LL
Sbjct: 86 FAAMGMYGRYRKIDWEKVRST------LKDVGILHKENDPIKNLSGGEFQRLSLARALLS 139
Query: 475 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 521
D DI +LDEP A +D + + + L ++ T ++V HD+ M+
Sbjct: 140 DPDILVLDEPEAGVDEMGKASFYELLNRLRKEKNITVIMVSHDIGMV 186
>gb|AAF73579.1| (AE002331) ABC transporter, ATP-binding protein [Chlamydia
muridarum]
Length = 528
Score = 101 bits (249), Expect = 2e-20
Identities = 129/509 (25%), Positives = 231/509 (45%), Gaps = 99/509 (19%)
Query: 99 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN------------LCEDNDSWDNVIR--- 143
+ G G+ GPNG GK+T +KI+ G + P+ L ++ DS+ +V+
Sbjct: 24 VFNPGNRYGLTGPNGAGKSTLLKIITGVIEPSRGTISLPKKIGILRQNIDSFSDVVVLDC 83
Query: 144 AFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELE 203
GN +E ++ + + ++ D + + G++ E++ + D + E +EL
Sbjct: 84 VIMGNS--RLWEAMQRRDA--LYAEEFTDAVGMEL-GEIEEIIGEEDGY-RAESEAEELL 137
Query: 204 L-----ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 258
L E +++ + RV + AL DEP+++LD+ + ++
Sbjct: 138 LGIGIPEEFFSQKMATIPLDLQFRVLLCQALFGHPEALLLDEPTNHLDLHSINWLGNFLK 197
Query: 259 RLANEGKAVLVVEHDLAVLD----YLSDVIH---VVYGEPGVYG---------------- 295
+ V+VV HD L+ +++D+ + ++Y PG Y
Sbjct: 198 ---DYNGTVIVVSHDRHFLNTITTHIADIDYDTIIIY--PGNYDAMVEMKTASREQEKAD 252
Query: 296 IFSKPKGTRNGINEFLQGY-----------------------LKDENVRFRPYEIRFT-- 330
I SK K + EF+ + LK N++ RPY IRF
Sbjct: 253 IKSKEKKIAQ-LREFVAKFGAGSRASQVQSRLREIKKLQPQELKKSNIQ-RPY-IRFPVS 309
Query: 331 -KLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLA 389
K S +V E + + + F LE I +G+ IG++G NG+GKTT +K+LA
Sbjct: 310 DKASGKVVFSIEGISKTYDADPLFNPFSLE-----IYQGDKIGVIGNNGLGKTTLMKLLA 364
Query: 390 GVEEPTEGKVEWDLTVA--YKPQ----YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLK 443
GVE+P+ G+++ VA Y PQ ++ E T++E L + + + ++ L K
Sbjct: 365 GVEQPSAGQIKLGHNVAFSYFPQNHADVLRDCGEETLFEWLRR-RKTGITDQEIRSVLGK 423
Query: 444 PLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 503
L D + V+ LSGGE R+ +A +L + ++ +LDE + +LD+E A++ AI
Sbjct: 424 MLFGGDDAFKQVKALSGGETARLLMAGMMLENHNMLVLDEANNHLDLESVSALAWAINDY 483
Query: 504 MEKNEKTALVVEHDVLMIDYVSDRLIVFE 532
TA+ V HD +I+ + +L++F+
Sbjct: 484 ----PGTAIFVSHDRTLIEECATKLLIFD 508
>pir||D69813 ABC transporter (ATP-binding protein) homolog yfmM - Bacillus
subtilis >gi|2443256|dbj|BAA22327.1| (D86417) YfmM
[Bacillus subtilis] >gi|2633066|emb|CAB12571.1| (Z99108)
similar to ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 518
Score = 101 bits (248), Expect = 3e-20
Identities = 124/511 (24%), Positives = 217/511 (42%), Gaps = 95/511 (18%)
Query: 81 EDCVHRYGVNAF---VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 137
+D H +G A V +RL G VG++G NG GK+T + I+ G+L P+ E
Sbjct: 7 KDLSHGFGDRAIFNNVSFRL---LKGEHVGLIGANGEGKSTFMNIITGKLEPD--EGKVE 61
Query: 138 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYV----------DLLPKAVKGKVRELLK 187
W +R L + K IR V+K + ++ K + EL K
Sbjct: 62 WSKNVRV---GYLDQHTVLEKGKSIRDVLKDAFHYLFAMEEEMNEIYNKMGEADPDELEK 118
Query: 188 KVDEVG----------------KFEEVVKELELENV-LDRELHQLSGGELQRVAIAAALL 230
++EVG K EE+ + L L ++ L+R++ LSGG+ +V +A LL
Sbjct: 119 LLEEVGVIQDALTNNDFYVIDSKVEEIARGLGLSDIGLERDVTDLSGGQRTKVLLAKLLL 178
Query: 231 RKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 290
K DEP++YLD + + R ++ N A +++ HD+ L+ + ++I+ V +
Sbjct: 179 EKPEILLLDEPTNYLDEQHIEWLKRYLQEYEN---AFILISHDIPFLNSVINLIYHVENQ 235
Query: 291 P-----GVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPY--------EIRFTKLSERVD 337
G Y F + + E + E + + R +S +
Sbjct: 236 ELTRYVGDYHQFMEVYEVKKQQLEAAYKKQQQEVAELKDFVARNKARVSTRNMAMSRQKK 295
Query: 338 VERETLVEY-PRLVKDYGSFKLEVEPGEI---RKGEVIG--------------------I 373
+++ ++E K FK G++ K VIG +
Sbjct: 296 LDKMDMIELAAEKPKPEFHFKPARTSGKLIFETKDLVIGYDSPLSRPLNLRMERGQKIAL 355
Query: 374 VGPNGIGKTTFVKMLAGVEEPTEGKVE--WDLTVAYKPQYIKAEYEGT-VYELLSKIDSS 430
G NGIGKTT +K L G +P EG VE + Y Q +K T + E+ S+ S
Sbjct: 356 YGANGIGKTTLLKSLLGEIQPLEGSVERGEHIYTGYFEQEVKETNNNTCIEEVWSEFPS- 414
Query: 431 KLNSNFYKTELLKPLGIIDLYDRNVED----LSGGELQRVAIAATLLRDADIYLLDEPSA 486
+ + E+ L +++E LSGGE +V + + + ++ +LDEP+
Sbjct: 415 -----YTQYEIRAAPAKCGLTTKHIESRVSVLSGGEKAKVRLCKLINSETNLLVLDEPTN 469
Query: 487 YLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 517
+LD + + + RA++ + + + L++ H+
Sbjct: 470 HLDADAKEELKRALK----EYKGSILLISHE 496
Score = 85.4 bits (208), Expect = 2e-15
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 48/212 (22%)
Query: 367 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTV--------------------- 405
KGE +G++G NG GK+TF+ ++ G EP EGKVEW V
Sbjct: 28 KGEHVGLIGANGEGKSTFMNIITGKLEPDEGKVEWSKNVRVGYLDQHTVLEKGKSIRDVL 87
Query: 406 --AYKPQYIKAEYEGTVYELLSKIDSSKL---------------NSNFY-----KTELLK 443
A+ + E +Y + + D +L N++FY E+ +
Sbjct: 88 KDAFHYLFAMEEEMNEIYNKMGEADPDELEKLLEEVGVIQDALTNNDFYVIDSKVEEIAR 147
Query: 444 PLGIIDL-YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 502
LG+ D+ +R+V DLSGG+ +V +A LL +I LLDEP+ YLD EQ + ++
Sbjct: 148 GLGLSDIGLERDVTDLSGGQRTKVLLAKLLLEKPEILLLDEPTNYLD-EQHI---EWLKR 203
Query: 503 LMEKNEKTALVVEHDVLMIDYVSDRLIVFEGE 534
+++ E +++ HD+ ++ V + + E +
Sbjct: 204 YLQEYENAFILISHDIPFLNSVINLIYHVENQ 235
>pir||C71220 probable sugar-binding transport ATP-binding protein - Pyrococcus
horikoshii >gi|3256407|dbj|BAA29090.1| (AP000001) 373aa
long hypothetical sugar-binding transport ATP-binding
protein [Pyrococcus horikoshii]
Length = 373
Score = 99.8 bits (245), Expect = 7e-20
Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 28/221 (12%)
Query: 332 LSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKM 387
+ ++V + V+ L K +G+F KL + I+ GE + ++GP+G GKTT ++M
Sbjct: 1 MGNNIEVIKMVEVKLENLTKRFGNFTAVNKLNLT---IKDGEFLVLLGPSGCGKTTTLRM 57
Query: 388 LAGVEEPTEGKVEW-DLTVAYKP---QYIKAEYEG-------TVYELLS------KIDSS 430
+AG+EEPTEG++ + D V Y P + I ++ TVYE ++ K
Sbjct: 58 IAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD 117
Query: 431 KLNSNF-YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD 489
+++ + ELL+ I +L +R LSGG+ QRVA+A ++ + D+ L+DEP + LD
Sbjct: 118 EIDKRVRWAAELLQ---IEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 174
Query: 490 VEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 530
+ R+A+ I+ L +K + T + V HD + + DR+ V
Sbjct: 175 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV 215
>pir||D75187 probable maltose/maltodextrin transport ATP-binding PAB2336 -
Pyrococcus abyssi (strain Orsay)
>gi|5457456|emb|CAB48947.1| (AJ248283) hypothetical
MALTOSE/MALTODEXTRIN TRANSPORT ATP-BINDING [Pyrococcus
abyssi]
Length = 364
Score = 99.5 bits (244), Expect = 1e-19
Identities = 71/209 (33%), Positives = 115/209 (54%), Gaps = 28/209 (13%)
Query: 344 VEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
V L K +G+F KL + I+ GE + ++GP+G GKTT ++M+AG+EEPTEGK+
Sbjct: 4 VRLENLTKKFGNFTAVNKLNLT---IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGKI 60
Query: 400 EW-DLTVAYKP---QYIKAEYEG-------TVYELLS------KIDSSKLNSNF-YKTEL 441
+ D V Y P + I ++ TVY+ ++ K +++ + EL
Sbjct: 61 YFGDREVTYLPPRERNISMVFQSYAVWPHMTVYDNIAFPLKIKKFPRDEIDKRVRWAAEL 120
Query: 442 LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 501
L+ I +L DR LSGG+ QRVA+A ++ + D+ L+DEP + LD + R+A+ I+
Sbjct: 121 LQ---IEELLDRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 177
Query: 502 HLMEKNEKTALVVEHDVLMIDYVSDRLIV 530
L +K + T + V HD + + DR+ V
Sbjct: 178 KLQQKLKVTTIYVTHDQVEAMTMGDRIAV 206
>sp|Q57855|Y412_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN MJ0412
>gi|2129162|pir||D64351 nitrate transport ATP-binding
protein - Methanococcus jannaschii
>gi|1591118|gb|AAB98401.1| (U67493) nitrate transporter
protein (nrtC) homolog (cmpC) [Methanococcus jannaschii]
Length = 267
Score = 98.7 bits (242), Expect = 2e-19
Identities = 61/186 (32%), Positives = 94/186 (49%), Gaps = 12/186 (6%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP---------QYIKA 414
E+ + E + ++GP+G GKTT ++++AG++ PTEGKV D P QY
Sbjct: 42 EVYENEFLTVMGPSGCGKTTLLRIIAGLDYPTEGKVLLDGKEVKGPGADRGVVFQQYTLM 101
Query: 415 EYEGTVYELLSKIDSSKLNSNF---YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 471
+ + + ++ + N + +K +G+ D LSGG QRVAIA T
Sbjct: 102 PWRTVLKNVTFGLELKGIPKNERIEIAKKFIKMVGLEGFEDAYPYQLSGGMQQRVAIART 161
Query: 472 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 531
L D +I L+DEP A LD + R + + + +K +KT V H V Y+SDR++V
Sbjct: 162 LANDPEIVLMDEPFAALDAQTRNILQNELLKIWQKEKKTVFFVTHSVDEAVYLSDRVVVL 221
Query: 532 EGEPGR 537
PGR
Sbjct: 222 TARPGR 227
>pir||B69756 ABC transporter (ATP-binding protein) homolog ycdI - Bacillus
subtilis >gi|2415737|dbj|BAA22247.1| (AB000617) YcdI
[Bacillus subtilis] >gi|2632572|emb|CAB12080.1| (Z99105)
similar to ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 231
Score = 97.1 bits (238), Expect = 5e-19
Identities = 63/194 (32%), Positives = 103/194 (52%), Gaps = 22/194 (11%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--------LTVAYKPQYIK-- 413
+I GE +GI GPNG K+T +K++ G+ +P EG V LT+ Y PQ I
Sbjct: 25 DIESGEFVGITGPNGASKSTLIKVMLGMLKPWEGTVTISKRNTEGKRLTIGYVPQQISSF 84
Query: 414 -AEYEGTVYELLSKIDSSK------LNSNFYKTELLKPLGIIDLYD---RNVEDLSGGEL 463
A + TV EL+ +K LN + E+ K L +++++D R + DLSGG+
Sbjct: 85 NAGFPSTVLELVQSGRYTKGKWFKRLNEEDH-LEVEKALKMVEMWDLRHRKIGDLSGGQK 143
Query: 464 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 523
Q++ IA L + D+ +LDEP+ +D + R + HL++ + +T ++V H+ +
Sbjct: 144 QKICIARMLASNPDLLMLDEPTTAVDYDSRKGFYEFMHHLVKNHNRTVVMVTHEQNEVQQ 203
Query: 524 VSDRLIVFE-GEPG 536
D++I E GE G
Sbjct: 204 FLDKVIRLERGEKG 217
>dbj|BAB05113.1| (AP001511) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 259
Score = 96.7 bits (237), Expect = 6e-19
Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 22/184 (11%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-----------EWDLT--VAYKPQY 411
IR+G +G+VGPNG GK+T +K + G+++P++G + +WD V+ K
Sbjct: 32 IRQGAFVGLVGPNGSGKSTLIKCILGLQKPSQGSIKLFGQPVDKFRQWDRIGYVSQKANS 91
Query: 412 IKAEYEGTVYELLS-----KIDSSKLNSNFYKT---ELLKPLGIIDLYDRNVEDLSGGEL 463
+ + TVYE++S K+ + + +K E + +G+ +N+ +LSGG+
Sbjct: 92 FNSGFPATVYEVVSMGLFGKVGMFRFLTKKHKQKVKEAVASVGMSGYLHQNIGELSGGQQ 151
Query: 464 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMID 522
QRV IA L+ D ++ +LDEP+ +DV + + L +K T L+V HD+ M D
Sbjct: 152 QRVFIARALVSDPELLILDEPTVGVDVSSVKSFYTLLSELNQKRGITLLLVTHDIGAMTD 211
Query: 523 YVSD 526
YV+D
Sbjct: 212 YVTD 215
>gb|AAK43169.1| Arabinose ABC transporter, ATP-binding protein [Sulfolobus
solfataricus]
Length = 371
Score = 96.3 bits (236), Expect = 8e-19
Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 29/203 (14%)
Query: 342 TLVEYPRLVKDYGSFKLEVEPGE-----IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE 396
T + L K + K EV+ + I G G++GP+G GKTTF++++AG+EEPT
Sbjct: 2 TTIRVENLSKIFKKGKTEVKAVDNVSITIDSGMAFGVLGPSGHGKTTFLRLIAGLEEPTS 61
Query: 397 GKVEWDLTVAYKPQYIKAEYEG----------------TVYE------LLSKIDSSKLNS 434
G + +D P+ + E TV++ L+K+ K+ +
Sbjct: 62 GYIYFDNEAVSSPRRVMMSPEKRGIAMVFQNWALYPNMTVFDNIAFPLKLAKVPKDKIEN 121
Query: 435 NFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 494
E+ + LG+ + +R ++LSGG++QR AIA L++D + LLDEP + LD + R
Sbjct: 122 KV--KEVSEELGLSGVLNRYPKELSGGQMQRTAIARALVKDPKVLLLDEPFSNLDAQIRE 179
Query: 495 AVSRAIRHLMEKNEKTALVVEHD 517
+ +R + + + T L+V HD
Sbjct: 180 SARALVRKIQRERKLTTLIVSHD 202
Score = 79.2 bits (192), Expect = 1e-13
Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 17/184 (9%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFER 156
+ GM G++GP+G GKTT ++++AG P + DN++ + R E +
Sbjct: 30 IDSGMAFGVLGPSGHGKTTFLRLIAGLEEPTSGYIYFDNEAVSSPRRVMMSPEKRGIAMV 89
Query: 157 LKNGEIRPVVKP----QYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDREL 212
+N + P + + L K K K+ +K+V E EL L VL+R
Sbjct: 90 FQNWALYPNMTVFDNIAFPLKLAKVPKDKIENKVKEVSE---------ELGLSGVLNRYP 140
Query: 213 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK-AVLVVE 271
+LSGG++QR AIA AL++ DEP S LD + R ++R++ E K L+V
Sbjct: 141 KELSGGQMQRTAIARALVKDPKVLLLDEPFSNLDAQIRESARALVRKIQRERKLTTLIVS 200
Query: 272 HDLA 275
HD A
Sbjct: 201 HDPA 204
>pir||C71197 probable ATP-binding transport protein - Pyrococcus horikoshii
>gi|3258287|dbj|BAA30970.1| (AP000007) 318aa long
hypothetical ATP-binding transport protein [Pyrococcus
horikoshii]
Length = 318
Score = 95.6 bits (234), Expect = 1e-18
Identities = 64/208 (30%), Positives = 109/208 (51%), Gaps = 23/208 (11%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK-------VEWDLTVAYKPQYIKAEYE 417
++KGE+ G++GPNG GKTT +K+L + EP+ G+ V D K + AE E
Sbjct: 37 VKKGELFGLLGPNGAGKTTTIKILTTLLEPSSGEAKVLGLDVVKDAREIRKRINLVAEGE 96
Query: 418 GTVYELLSKIDSSKLNSNFYKT----------ELLKPLGIIDLYDRNVEDLSGGELQRVA 467
T+Y L+ ++ + ++ Y ELLK +G+ D + V + S G QR+A
Sbjct: 97 RTLYWRLTAYENLRYFASIYYIPRREAEKRIEELLKMVGLWDRRNDLVMNYSRGMKQRLA 156
Query: 468 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 527
IA L+ D ++ LDEP+ LDV+ + V +R L+++ KT L+ H + + + DR
Sbjct: 157 IAKALINDPEVLFLDEPTLGLDVQSAVFVRELVRRLVDEEGKTVLLTTHYMNEAEELCDR 216
Query: 528 LIVFEGEPGRHGRALPPMGMREGMNRFL 555
+ + + HG+ + + EG+ R +
Sbjct: 217 IAIID-----HGKII-ALNTPEGLKRMV 238
Score = 70.2 bits (169), Expect = 6e-11
Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 24/198 (12%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
VK G + G++GPNG GKTT +KIL L P+ E +V++ R E++ +
Sbjct: 37 VKKGELFGLLGPNGAGKTTTIKILTTLLEPSSGEAKVLGLDVVKDAR--EIRKRINLVAE 94
Query: 160 GE------IRPVVKPQY---VDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDR 210
GE + +Y + +P+ RE K++ EE++K + L + +
Sbjct: 95 GERTLYWRLTAYENLRYFASIYYIPR------REAEKRI------EELLKMVGLWDRRND 142
Query: 211 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLV 269
+ S G QR+AIA AL+ F DEP+ LD++ + V ++RRL + EGK VL+
Sbjct: 143 LVMNYSRGMKQRLAIAKALINDPEVLFLDEPTLGLDVQSAVFVRELVRRLVDEEGKTVLL 202
Query: 270 VEHDLAVLDYLSDVIHVV 287
H + + L D I ++
Sbjct: 203 TTHYMNEAEELCDRIAII 220
>pir||T48849 iron sulfur protein [imported] - Methanothermus fervidus
(fragment) >gi|149795|gb|AAA73367.1| (M96826) iron
sulfur protein [Methanothermus fervidus]
Length = 74
Score = 95.6 bits (234), Expect = 1e-18
Identities = 41/72 (56%), Positives = 54/72 (74%), Gaps = 1/72 (1%)
Query: 6 RIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKC 65
R+A++D D+C P KCG +LC CP RMG + I+I ++ KPII E C+GCGICV KC
Sbjct: 3 RLAILDKDRCQPKKCG-YLCLEYCPGVRMGEDTIVIHKKTKKPIISEKLCSGCGICVKKC 61
Query: 66 PFNAISIVNLPE 77
PF+AI+I+NLPE
Sbjct: 62 PFDAINIINLPE 73
>emb|CAC11290.1| (AL445063) probable ATP-binding protein [Thermoplasma acidophilum]
Length = 317
Score = 95.6 bits (234), Expect = 1e-18
Identities = 62/199 (31%), Positives = 106/199 (53%), Gaps = 14/199 (7%)
Query: 344 VEYPRLVKDYGSFKLEVEPG-EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD 402
+E + K YG FK+ + I KGE I+GP+G GK+T +K++ G+E+P GK+ D
Sbjct: 5 LELRNINKSYGKFKVISDLSLTIEKGEFFVILGPSGTGKSTLLKIIVGIEQPDSGKIIID 64
Query: 403 LTVAYK----PQYIKAEYEG-TVYELLSKIDSSK--LNSNFYKT------ELLKPLGIID 449
K + I ++ +Y ++ D+ L N ++ E + LGI +
Sbjct: 65 GKDVTKLPPNKRNIAMVFQNYALYPNMNVFDNIAFPLRMNHFRNISRRVHETAQKLGIEN 124
Query: 450 LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 509
L D+ V +SGG+ QRVA+A ++R+ ++LLDEP + LD R A ++ + ++ ++
Sbjct: 125 LLDKKVTQISGGQQQRVALARAIVRNPALFLLDEPLSNLDARVRYAARNELKKIQQELDQ 184
Query: 510 TALVVEHDVLMIDYVSDRL 528
T L V HD + + DR+
Sbjct: 185 TFLFVTHDQKEAEALGDRI 203
>pir||C69995 anion transport ABC transporter (ATP-bindi) homolog ytlC - Bacillus
subtilis >gi|2293296|gb|AAC00374.1| (AF008220) putative
transporter [Bacillus subtilis]
>gi|2635545|emb|CAB15039.1| (Z99119) similar to anion
transport ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 260
Score = 95.2 bits (233), Expect = 2e-18
Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 12/185 (6%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV----------EWDLTVAYKPQYIK 413
+ KG+ I +GP+G GKTT + ++AG+ EP+EG+V E ++ + Y+
Sbjct: 29 DAEKGDFISFLGPSGCGKTTLLSIIAGLIEPSEGRVLIEGREPNQKEHNIGYMLQQDYLF 88
Query: 414 A--EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 471
E V L D+ S LL G+ID+ + ++LSGG QR A+A T
Sbjct: 89 PWKSIEENVLLGLKIADTLTEESKAAALGLLPEFGLIDVEKKYPKELSGGMRQRAALART 148
Query: 472 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 531
L + + LLDEP + LD + +L++ + +++ +KTA++V HD+ +SD + +F
Sbjct: 149 LAPNPSLLLLDEPFSALDFQTKLSLENLVFRTLKEYQKTAVLVTHDIGEAIAMSDTIFLF 208
Query: 532 EGEPG 536
+PG
Sbjct: 209 SNQPG 213
>pir||C71645 ferric transport ATP-binding protein (afuC) RP834 - Rickettsia
prowazekii >gi|3861360|emb|CAA15259.1| (AJ235273) FERRIC
TRANSPORT ATP-BINDING PROTEIN (afuC) [Rickettsia
prowazekii]
Length = 233
Score = 94.8 bits (232), Expect = 2e-18
Identities = 56/200 (28%), Positives = 106/200 (53%), Gaps = 9/200 (4%)
Query: 340 RETLVEYPRLVKDYGSFKLEVEPGE--IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 397
++ ++E+ + K +G+ K + ++K + ++GPNG GKTT V+++ G+E+PT G
Sbjct: 2 QKPIIEFRNVSKKFGN-KTPISKVSFIVKKNNITTLIGPNGAGKTTIVRLMLGLEKPTSG 60
Query: 398 KVEWD--LTVAYKPQY--IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDR 453
+V D L + Y PQ + + TV + L + S N N E+ + + + +
Sbjct: 61 EVIIDRKLKIGYVPQKFGLTTDIPITVKKFLDLLAPSHFNKNI--KEISSFIDLEHIKKQ 118
Query: 454 NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 513
+ LSGG+ Q+V +A +++ + D+ +LDEP LDV + + I + +K T +
Sbjct: 119 EISKLSGGQFQKVVLACSIINNPDLIILDEPLQSLDVTSQQEFYQLIHFIRKKLNITVFM 178
Query: 514 VEHDVLMIDYVSDRLIVFEG 533
+ HD+ + SD++I G
Sbjct: 179 ISHDLFTVIKNSDQVICLNG 198
>gi|11498626 ABC transporter, ATP-binding protein [Archaeoglobus fulgidus]
>gi|7445710|pir||E69377 ABC transporter, ATP-binding
protein homolog - Archaeoglobus fulgidus
>gi|2649574|gb|AAB90222.1| (AE001033) ABC transporter,
ATP-binding protein [Archaeoglobus fulgidus]
Length = 275
Score = 94.8 bits (232), Expect = 2e-18
Identities = 65/204 (31%), Positives = 116/204 (56%), Gaps = 21/204 (10%)
Query: 343 LVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-- 399
++E L K YGSF+ ++ +R+GEV+G++G NG GK+T +K+LAG+ P G+V
Sbjct: 1 MLEVRNLFKRYGSFEAVKGISFSVRRGEVLGLIGENGAGKSTTLKILAGLIRPDGGEVRY 60
Query: 400 -------EWDLTVAYKPQYIKAEYEG-TVYELLSKIDSSKLNSNFY--KTELLKPLGIID 449
E + Y P+ I A Y+ TV E L+ L ++ Y + ++ L ++
Sbjct: 61 FGKDFDEEMKRIIGYLPE-IDALYDNMTVSEYLN------LFADIYDVRADIDGLLERLN 113
Query: 450 LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 509
L D+ + DLS G ++V+IA TLL D ++ + DEP+ LD L+++ +R L E+ K
Sbjct: 114 LPDKYISDLSKGMRRKVSIARTLLHDPEVLVYDEPTGGLDPTTSLSIAELLRELAERG-K 172
Query: 510 TALVVEHDVLMIDYVSDRLIVFEG 533
+ H++ ++ ++D+++V +G
Sbjct: 173 IIVFSAHNMYYVERIADKVVVMKG 196
Score = 75.7 bits (183), Expect = 1e-12
Identities = 54/197 (27%), Positives = 98/197 (49%), Gaps = 21/197 (10%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
V+ G V+G++G NG GK+T +KILAG + P+ G E++ YF + +
Sbjct: 24 VRRGEVLGLIGENGAGKSTTLKILAGLIRPD----------------GGEVR-YFGKDFD 66
Query: 160 GEIRPVVK--PQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSG 217
E++ ++ P+ L + L + +V ++ LE N+ D+ + LS
Sbjct: 67 EEMKRIIGYLPEIDALYDNMTVSEYLNLFADIYDVRA--DIDGLLERLNLPDKYISDLSK 124
Query: 218 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVL 277
G ++V+IA LL +DEP+ LD L +A ++R LA GK ++ H++ +
Sbjct: 125 GMRRKVSIARTLLHDPEVLVYDEPTGGLDPTTSLSIAELLRELAERGKIIVFSAHNMYYV 184
Query: 278 DYLSDVIHVVYGEPGVY 294
+ ++D + V+ G +Y
Sbjct: 185 ERIADKVVVMKGGKALY 201
>pir||H75157 daunorubicin resistance ATP-binding protein (drra-2) PAB2068 -
Pyrococcus abyssi (strain Orsay)
>gi|5457853|emb|CAB49343.1| (AJ248284) daunorubicin
resistance ATP-binding protein (drrA-2) [Pyrococcus
abyssi]
Length = 318
Score = 94.4 bits (231), Expect = 3e-18
Identities = 64/205 (31%), Positives = 108/205 (52%), Gaps = 25/205 (12%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE---WDLTVAY----KPQYIKAEYE 417
++KGE+ G++GPNG GKTT +K+L + EPT G+ +D+ K + AE E
Sbjct: 37 VKKGELFGLLGPNGAGKTTTIKILTTLLEPTSGEARVLGFDIVKEAREIRKRINLVAEGE 96
Query: 418 GTVYELLSKIDSSKLNSNFYKT----------ELLKPLGIIDLYDRNVEDLSGGELQRVA 467
T+Y L+ ++ + ++ Y LL +G+ D D V + S G QR+A
Sbjct: 97 RTLYWRLTAYENLRYFASIYYVPKKVAEERIRNLLHMVGLWDRKDDLVMNYSRGMKQRLA 156
Query: 468 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 527
IA L+ D ++ LDEP+ LDV+ + V I+ L+E+ +KT L+ H + + + DR
Sbjct: 157 IAKALINDPEVLFLDEPTLGLDVQSAIFVRELIKKLVEEEKKTVLLTTHYMHEAEELCDR 216
Query: 528 LIVFEGEPGRHGRAL---PPMGMRE 549
+ + + HGR + P G+++
Sbjct: 217 IAIID-----HGRIIALDTPEGLKK 236
>gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dppF-3) [Sulfolobus
solfataricus]
Length = 323
Score = 94.4 bits (231), Expect = 3e-18
Identities = 57/182 (31%), Positives = 101/182 (55%), Gaps = 15/182 (8%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------DLTVAYKPQYIKAEYE 417
EIRKGEV+G+VG +G GKTT K+LA +E+PT G + + D + + ++I ++
Sbjct: 44 EIRKGEVLGVVGESGSGKTTLGKVLATLEKPTGGNLIFMGMEVNDRNINHVRKHIHMVFQ 103
Query: 418 GTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLY--DRNVEDLSGGELQRVAI 468
+ + ++ + K + LL+ +G+ Y D+ +LSGG+ QRVAI
Sbjct: 104 NPMTSINPRMKVKDIVREAMKEKREERVKKLLEEVGLDYNYVKDKYPRELSGGQTQRVAI 163
Query: 469 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 528
A L ++ D +LDEP++ LD + + + L ++ + T L + H++ + Y+SDR+
Sbjct: 164 ARALAKEPDFLILDEPTSALDASVQAQILNLLVDLQKERKLTYLFITHNIAVARYISDRV 223
Query: 529 IV 530
I+
Sbjct: 224 II 225
Score = 88.5 bits (216), Expect = 2e-16
Identities = 69/198 (34%), Positives = 105/198 (52%), Gaps = 24/198 (12%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILA-------GQLIPNLCEDNDSWDNVIRAFRGNELQN 152
++ G V+G+VG +G+GKTT K+LA G LI E ND N +R QN
Sbjct: 45 IRKGEVLGVVGESGSGKTTLGKVLATLEKPTGGNLIFMGMEVNDRNINHVRKHIHMVFQN 104
Query: 153 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-DEVGKFEEVVKELELENVLDRE 211
I P +K + D++ +A+K K E +KK+ +EVG L+ V D+
Sbjct: 105 PMT-----SINPRMKVK--DIVREAMKEKREERVKKLLEEVG--------LDYNYVKDKY 149
Query: 212 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK-AVLVV 270
+LSGG+ QRVAIA AL ++ F DEP+S LD + ++ ++ L E K L +
Sbjct: 150 PRELSGGQTQRVAIARALAKEPDFLILDEPTSALDASVQAQILNLLVDLQKERKLTYLFI 209
Query: 271 EHDLAVLDYLSDVIHVVY 288
H++AV Y+SD + ++Y
Sbjct: 210 THNIAVARYISDRVIIMY 227
>pir||A82429 iron(III) ABC transporter, ATP-binding protein VCA0687 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9658105|gb|AAF96587.1| (AE004398) iron(III) ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 351
Score = 94.0 bits (230), Expect = 4e-18
Identities = 63/213 (29%), Positives = 113/213 (52%), Gaps = 20/213 (9%)
Query: 338 VERETLVEYPRLVKDYGSFKLEVEPG-EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE 396
+E++ V + K +GS + EI+KG ++ ++GP+G GKTT ++++AG+E+PT
Sbjct: 1 MEKQNFVVLKNICKRFGSNTVIGNLDLEIKKGSLVTLLGPSGCGKTTVLRLVAGLEKPTS 60
Query: 397 GKV-------------EWDLTVAYKPQYI---KAEYEGTVYEL-LSKIDSSKLNSNFYKT 439
G++ + D+ + ++ + + YE Y L + K+ S ++
Sbjct: 61 GQIFIDGEDVTERSIQQRDICMVFQSYALFPHMSLYENVAYGLKMLKLPSEEVRQRV--D 118
Query: 440 ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 499
E LK + + + +R V+ +SGG+ QRVA+A L+ + L DEP + LD R ++
Sbjct: 119 EALKIVDLEGMGERYVDQISGGQQQRVALARALVLKPKVLLFDEPLSNLDANLRRSMRET 178
Query: 500 IRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 532
IR L ++ + T+L V HD VSD +IV +
Sbjct: 179 IRELQQRFDITSLYVTHDQAEAFAVSDTVIVMK 211
>gb|AAK41273.1| Sugar ABC transporter [Sulfolobus solfataricus]
Length = 324
Score = 93.2 bits (228), Expect = 7e-18
Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 15/256 (5%)
Query: 82 DCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNV 141
D V +YG N + ++ G I+GP+G GK+T +KILAG I L + D
Sbjct: 7 DIVKKYGKNIVINGITEKIETGEFFVILGPSGEGKSTLLKILAG--IEKLDKGKIIADGA 64
Query: 142 IRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKE 201
+ E +N +N + P + + P ++G +KK + + + E+ K
Sbjct: 65 DITDKPPEKRNVAMVFQNYALYPNMSVRDNIAFPLKMRG-----MKKEEIIERVEKAAKL 119
Query: 202 LELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA 261
L + +LD+++ Q+SGG+ QRVA+A A++R ++ DEP S LD R R ++R+
Sbjct: 120 LGISEILDKKVTQISGGQQQRVALARAIVRNPSYFLLDEPLSNLDARVRTTARGELKRIQ 179
Query: 262 NEGKAVLV-VEHDLAVLDYLSDVIHVVY-------GEPGVYGIFSKPKGTRNGINEFLQG 313
E K + V HD L+D I +++ +P + K K + EF
Sbjct: 180 KELKGTFIYVTHDQKEALSLADRIAILHKGKFEQVSDPKTLYEYPKTKWVAQFVGEFPMN 239
Query: 314 YLKDENVRFRPYEIRF 329
+L E ++ + EI F
Sbjct: 240 FLPGELMKEKAQEIGF 255
>pir||F72421 iron(III) ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980566|gb|AAD35172.1|AE001694_8 (AE001694)
iron(III) ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 256
Score = 92.1 bits (225), Expect = 2e-17
Identities = 70/242 (28%), Positives = 113/242 (45%), Gaps = 25/242 (10%)
Query: 354 GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE------WDLT--- 404
G F L+ ++KGE GI+GPNG GKTT +K+L G+ P +G V+ W+ +
Sbjct: 15 GGFSLKNINLSVKKGEFFGIIGPNGSGKTTLLKILVGIFRPQKGTVQLLGRIPWETSRKE 74
Query: 405 ----VAYKPQYIKAEYEGTVYEL--------LSKIDSSKLNSNFYKTELLKPLGIIDLYD 452
V Q Y+ +V E+ LS + + + L+ G + D
Sbjct: 75 MAKIVTLVSQDFFPSYDFSVKEIVEMGRLPHLSLLSGTSRKDEEIVLKSLELTGTLKFVD 134
Query: 453 RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 512
RN LS GE ++V ++ +++D +I L+DE +A+LD V ++ L E KT +
Sbjct: 135 RNFWTLSSGERRKVVLSKAIVQDTEILLIDELTAHLDYNNVSLVGNVLKRLKESG-KTII 193
Query: 513 VVEHDVLMIDYVSDRL-IVFEGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRP 571
V HD+ + + DR+ ++ GE + G PP + E + R P +GRP
Sbjct: 194 SVFHDINVASALCDRIGVMKNGEMIKTG--APPEVVTEEVLRNTFETEFVVLEHPVTGRP 251
Query: 572 RA 573
A
Sbjct: 252 LA 253
>gb|AAD05298.1| (AF082511) putative ATP-binding protein MglA [Treponema denticola]
Length = 497
Score = 92.1 bits (225), Expect = 2e-17
Identities = 117/470 (24%), Positives = 195/470 (40%), Gaps = 67/470 (14%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
V+ G V+G++G NG GK+T +K L G I E S N + E +N E L++
Sbjct: 28 VRQGSVMGLMGENGAGKSTMMKCLFG--IYTRDEGAISLLN-----KSIEFKNPKEALES 80
Query: 160 GEIRPVVKPQYVDLLPKAVK-----GKVRELLKKVDEVGKFEE---VVKELELENVLDRE 211
G +V + L + V G+ VDE+ FE + L +
Sbjct: 81 GVA--MVHQELNLCLDRTVTDNLFLGRYPTNFGIVDEIKMFESASSLFSSLNMNVNPKTI 138
Query: 212 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 271
+ +S + Q V IA A+ A DEP+S L R+ K+ +IR L +G + + +
Sbjct: 139 MRTMSVSQRQMVEIAKAVSYNAKLIVLDEPTSSLTEREVKKLFSIIRALQKKGVSFIYIS 198
Query: 272 HDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTK 331
H + + + D + V+ I SKP N +NE + + R + RF
Sbjct: 199 HKMDEVFEVCDEVAVLRDGK---MILSKPVAGTN-MNEIISAMVG------RSLDKRFPD 248
Query: 332 LSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV 391
+ +V E ++ L Y LE +RKGE++G+ G G G++ + L G+
Sbjct: 249 VD---NVPGEDFLKIENLKTKYAPV-LEDISFTVRKGEILGLYGLVGAGRSELLGALFGI 304
Query: 392 EEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL---------- 441
G + ++ K K+ E + + KLN F K +
Sbjct: 305 RTIESGSI----SINDKYLKFKSSKEAMAHGFALLTEERKLNGMFGKDTIEFNTVITNLN 360
Query: 442 -LKPLGIID--------------------LYDRNVEDLSGGELQRVAIAATLLRDADIYL 480
K +G++ D+ + LSGG Q+V I L R D++L
Sbjct: 361 NYKTIGVLSKRKIREAANREIETMRTRCLSADQGISALSGGNQQKVIIGKWLERSPDVFL 420
Query: 481 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 530
+DEP+ +DV + + + I M K KT +VV ++ I +++R+ V
Sbjct: 421 MDEPTRGIDVGAKYEIYQLIIK-MAKEGKTIIVVSSEMPEILGITNRIAV 469
>pir||G75124 abc-transporter ATP-binding protein PAB0545 - Pyrococcus abyssi
(strain Orsay) >gi|5458223|emb|CAB49712.1| (AJ248285)
ABC-TRANSPORTER ATP-BINDING PROTEIN [Pyrococcus abyssi]
Length = 329
Score = 91.7 bits (224), Expect = 2e-17
Identities = 67/217 (30%), Positives = 114/217 (51%), Gaps = 21/217 (9%)
Query: 344 VEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD- 402
VE + K + FKL V+ E++ GE+I I+GP+G GKTT ++++AG+E P +G V +D
Sbjct: 4 VELRGVEKKFPGFKLRVDL-EVKDGELISILGPSGCGKTTTLRIIAGLERPDKGNVLFDG 62
Query: 403 LTVAYKPQYIK---------------AEYEGTVYEL-LSKIDSSKLNSNFYKTELLKPLG 446
V + P Y + ++ + L + K+ ++ E+L+ +G
Sbjct: 63 RDVTFLPPYSRNIGFVFQDYALFPHMNVFKNVAFGLEVRKLPRKEIERKV--REVLELVG 120
Query: 447 IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 506
+ +R E LSGG+ QRVA+A L+ + ++ LLDEP + LD + R ++ I+ + ++
Sbjct: 121 LKGFENRMPEQLSGGQQQRVALARALVIEPEVLLLDEPLSNLDAKVRESLRMEIKRIQKE 180
Query: 507 NEKTALVVEHDVLMIDYVSDRLIVFE-GEPGRHGRAL 542
T + V HD +SDR+ V G + GR L
Sbjct: 181 LGITTMYVTHDQEEAMAISDRIAVMNFGRIEQVGRPL 217
Score = 73.0 bits (176), Expect = 9e-12
Identities = 62/190 (32%), Positives = 99/190 (51%), Gaps = 10/190 (5%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
VKDG ++ I+GP+G GKTT ++I+AG P+ + N +D F +N ++
Sbjct: 24 VKDGELISILGPSGCGKTTTLRIIAGLERPD--KGNVLFDGRDVTFLPPYSRNIGFVFQD 81
Query: 160 GEIRPVVKPQYVDLLPKAVKG-KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGG 218
+ P ++++ G +VR+L +K E K EV++ + L+ +R QLSGG
Sbjct: 82 YALFP-----HMNVFKNVAFGLEVRKLPRKEIE-RKVREVLELVGLKGFENRMPEQLSGG 135
Query: 219 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHDLAVL 277
+ QRVA+A AL+ + DEP S LD + R + I+R+ E G + V HD
Sbjct: 136 QQQRVALARALVIEPEVLLLDEPLSNLDAKVRESLRMEIKRIQKELGITTMYVTHDQEEA 195
Query: 278 DYLSDVIHVV 287
+SD I V+
Sbjct: 196 MAISDRIAVM 205
>pir||E81105 ABC transporter, ATP-binding protein NMB1240 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226480|gb|AAF41621.1| (AE002472) ABC transporter,
ATP-binding protein [Neisseria meningitidis MC58]
Length = 542
Score = 91.7 bits (224), Expect = 2e-17
Identities = 118/516 (22%), Positives = 221/516 (41%), Gaps = 98/516 (18%)
Query: 102 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGE 161
+G G++G NG+GK+T +KIL G L E + +N +R + + Q +E ++ +
Sbjct: 26 EGNRYGLIGANGSGKSTFMKILGGDLEQTAGEV--AIENGVRLGKLRQDQFAYEDMRVLD 83
Query: 162 I---------RPVVKPQYVDLLPKAVKG---KVRELLKKVDEVGKFEEVVKELEL----- 204
+ + + + P+A + K EL K E + + EL
Sbjct: 84 VVMMGHTEMWAAMTERDAIYANPEATEDDYMKAAELEAKFAEYDGYTAEARAAELLSGVG 143
Query: 205 --ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 262
E++ + ++ +++ G RV +A AL K DEP++ LDI R + + N
Sbjct: 144 ISEDLHNAKMAEVAPGFKLRVLLAQALFSKPDVLLLDEPTNNLDIN----TIRWLEGVLN 199
Query: 263 E-GKAVLVVEHD----------LAVLDYLSDVIHVVYGEPGVYGIF-------------- 297
+ ++++ HD +A LDY + I+ PG Y +
Sbjct: 200 QYDSTMIIISHDRHFLNEVCTHMADLDYNTITIY-----PGNYDDYMLASAQSRERALKD 254
Query: 298 -SKPKGTRNGINEFLQGY-------------------LKDENVRFRPYE-----IRFTKL 332
+K K + EF+ + +K E V +P IRF +
Sbjct: 255 NAKAKEKLQELQEFVARFSANKSKARQATSRLKQADKIKSEMVEVKPSTRQNPYIRF-EA 313
Query: 333 SERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE 392
E+ + R+ VE +L K + + + + G+ + I+GPNG GK+T +K+LAG
Sbjct: 314 DEKAKLHRQA-VEVEKLAKRFETQLFKNLNFILEAGQRLAIIGPNGAGKSTLLKLLAGAY 372
Query: 393 E--------PTEGKVEW--DLTVAYKPQYIKAEY--EGTVYELLSKIDSSKLNSNFYKTE 440
P EG ++W +V Y PQ + ++ + + E + + + +
Sbjct: 373 NPEYSDGLLPDEGTIKWAEKASVGYYPQDHENDFDVDMDLSEWMRQWGQEGDDEQVIRGT 432
Query: 441 LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 500
L + L + + V+ LSGGE R+ LL ++ ++DEP+ ++D+E +++ A
Sbjct: 433 LGRLLFGSNDVVKKVKVLSGGEKGRMLYGKLLLLKPNVLVMDEPTNHMDMESIESLNMA- 491
Query: 501 RHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPG 536
+EK T + V HD + ++ ++I +G+ G
Sbjct: 492 ---LEKYNGTLIFVSHDRQFVSSLATQIIELDGKGG 524
>pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf) PAB1347 -
Pyrococcus abyssi (strain Orsay)
>gi|5458955|emb|CAB50442.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 319
Score = 91.3 bits (223), Expect = 3e-17
Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 24/204 (11%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN----LCEDNDSWDNVIRAFRGNELQNYFE 155
+K+G +V +VG +G+GKTT K++ + P L + D W +F ++L NY+
Sbjct: 32 IKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIW-----SFDKDKLMNYYY 86
Query: 156 RLKNGEIRPVVKPQYVDLLPKAVKGKV-----RELLKKVDEVGKFEEVVKELELENVLDR 210
+ ++ V + + P +V R LK V +V K E V + LE + R
Sbjct: 87 K----NVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVGLNPR 142
Query: 211 EL-----HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA-NEG 264
E+ HQLSGG+LQR+ IA ALL + DE S LD R+ V ++ N G
Sbjct: 143 EILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNHG 202
Query: 265 KAVLVVEHDLAVLDYLSDVIHVVY 288
+V+ + HDLA+ Y+SD I ++Y
Sbjct: 203 TSVIFITHDLALGYYISDKIIIMY 226
Score = 73.4 bits (177), Expect = 7e-12
Identities = 56/222 (25%), Positives = 107/222 (47%), Gaps = 27/222 (12%)
Query: 336 VDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 395
++V+ T + L+ Y ++ I++GE++ +VG +G GKTT K++ + +PT
Sbjct: 3 LEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPT 62
Query: 396 EGKV----------EWDLTVAYKPQYIKAEYEGTV--YELLSKIDSS---------KLNS 434
GK+ + D + Y + ++A ++ + L K+D K S
Sbjct: 63 SGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVS 122
Query: 435 NFYKTELLK-PLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYL 488
+ K EL++ L + L R + LSGG+LQR+ IA LL + + + DE + L
Sbjct: 123 DVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSML 182
Query: 489 DVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 530
D R+ V + + + + + + HD+ + Y+SD++I+
Sbjct: 183 DASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIII 224
>pir||B81910 probable ABC-transporter ATP-binding protein NMA1409 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7380068|emb|CAB84649.1| (AL162755) putative
ABC-transporter ATP-binding protein [Neisseria
meningitidis Z2491]
Length = 542
Score = 91.3 bits (223), Expect = 3e-17
Identities = 118/516 (22%), Positives = 220/516 (41%), Gaps = 98/516 (18%)
Query: 102 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGE 161
+G G++G NG+GK+T +KIL G L E + +N +R + + Q +E ++ +
Sbjct: 26 EGNRYGLIGANGSGKSTFMKILGGDLEQTAGEV--AIENGVRLGKLRQDQFAYEDMRVLD 83
Query: 162 I---------RPVVKPQYVDLLPKAVKG---KVRELLKKVDEVGKFEEVVKELEL----- 204
+ + + + P+A + K EL K E + + EL
Sbjct: 84 VVMMGHTEMWAAMTERDAIYANPEATEDDYMKAAELEAKFAEYDGYTAEARAAELLSGVG 143
Query: 205 --ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 262
E++ + + +++ G RV +A AL K DEP++ LDI R + + N
Sbjct: 144 ISEDLHNATMAEVAPGFKLRVLLAQALFSKPDVLLLDEPTNNLDIN----TIRWLEGVLN 199
Query: 263 E-GKAVLVVEHD----------LAVLDYLSDVIHVVYGEPGVYGIF-------------- 297
+ ++++ HD +A LDY + I+ PG Y +
Sbjct: 200 QYDSTMIIISHDRHFLNEVCTHMADLDYNTITIY-----PGNYDDYMLASAQSRERALKD 254
Query: 298 -SKPKGTRNGINEFLQGY-------------------LKDENVRFRPYE-----IRFTKL 332
+K K + EF+ + +K E V +P IRF +
Sbjct: 255 NAKAKEKLQELQEFVARFSANKSKARQATSRLKQADKIKSEMVEVKPSTRQNPYIRF-EA 313
Query: 333 SERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE 392
E+ + R+ VE +L K + + + + G+ + I+GPNG GK+T +K+LAG
Sbjct: 314 DEKAKLHRQA-VEVEKLAKRFETQLFKNLNFILEAGQRLAIIGPNGAGKSTLLKLLAGAY 372
Query: 393 E--------PTEGKVEW--DLTVAYKPQYIKAEY--EGTVYELLSKIDSSKLNSNFYKTE 440
P EG ++W +V Y PQ + ++ + + E + + + +
Sbjct: 373 NPEYSDGLLPDEGSIKWAEKASVGYYPQDHENDFDVDMDLSEWMRQWGQDGDDEQVIRGT 432
Query: 441 LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 500
L + L + + V+ LSGGE R+ LL ++ ++DEP+ ++D+E +++ A
Sbjct: 433 LGRLLFGSNDVVKKVKVLSGGEKGRMLYGKLLLLKPNVLVMDEPTNHMDMESIESLNMA- 491
Query: 501 RHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPG 536
+EK T + V HD + ++ ++I +G+ G
Sbjct: 492 ---LEKYNGTLIFVSHDRQFVSSLATQIIELDGKGG 524
>pir||T44799 iron transport ATP-binding protein irp1D [imported] -
Corynebacterium diphtheriae
>gi|5823378|gb|AAD53128.1|AF176902_3 (AF176902) IRP1D
[Corynebacterium diphtheriae]
Length = 283
Score = 90.9 bits (222), Expect = 4e-17
Identities = 70/232 (30%), Positives = 108/232 (46%), Gaps = 24/232 (10%)
Query: 368 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTV--AYKPQYIK------------ 413
G++ IVGPNG GK+TF++ LA + PT G VE + AY + +
Sbjct: 44 GKITSIVGPNGCGKSTFLRTLARLIRPTAGSVELNGKPLGAYSSRELAKRLGLLPQTPVE 103
Query: 414 ------AEYEGTVYELLSKIDSSKLNSNF-YKTELLKPLGIIDLYDRNVEDLSGGELQRV 466
A+ G L +I S++ E + + +L DR++E+LSGG+ QRV
Sbjct: 104 PDGITVADLVGEAARLTREILGRWTASDYDIVAEAMASTQVAELADRSIEELSGGQRQRV 163
Query: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 526
IA L + D+ LLDEP+ YLD++ +L V + L ++ T ++V HD+ + SD
Sbjct: 164 WIAMALAQQTDVLLLDEPTTYLDLKHQLEVLDLLTDLNQRRGTTIIMVLHDLNLAARYSD 223
Query: 527 RLIVFEGEPGR-HGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEG 577
L+ GR H P + + + R + DP SG P G
Sbjct: 224 NLVAM--RDGRLHSVGRPVDVLTQDLTREAFDLESLVITDPVSGLPTVTPIG 273
Score = 76.9 bits (186), Expect = 6e-13
Identities = 60/195 (30%), Positives = 96/195 (48%), Gaps = 13/195 (6%)
Query: 98 PIVKD-------GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 150
PIVKD G + IVGPNG GK+T ++ LA +LI + + A+ EL
Sbjct: 32 PIVKDVTLSFESGKITSIVGPNGCGKSTFLRTLA-RLIRPTAGSVELNGKPLGAYSSREL 90
Query: 151 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK--VDEVGKFEEVVKELELENVL 208
L + P DL+ +A + RE+L + + E + ++ +
Sbjct: 91 AKRLGLLPQTPVEP-DGITVADLVGEAAR-LTREILGRWTASDYDIVAEAMASTQVAELA 148
Query: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL-ANEGKAV 267
DR + +LSGG+ QRV IA AL ++ DEP++YLD++ +L+V ++ L G +
Sbjct: 149 DRSIEELSGGQRQRVWIAMALAQQTDVLLLDEPTTYLDLKHQLEVLDLLTDLNQRRGTTI 208
Query: 268 LVVEHDLAVLDYLSD 282
++V HDL + SD
Sbjct: 209 IMVLHDLNLAARYSD 223
>pir||E72314 ribose ABC transporter, ATP-binding protein - Thermotoga maritima
(strain MSB8) >gi|4981493|gb|AAD36035.1|AE001758_13
(AE001758) ribose ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 523
Score = 90.9 bits (222), Expect = 4e-17
Identities = 131/490 (26%), Positives = 208/490 (41%), Gaps = 75/490 (15%)
Query: 88 GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 147
GV A L I K G V +VG NG GK+T +KILAG + P D + +
Sbjct: 24 GVIAVNNVTLQIYK-GEVCALVGENGAGKSTLMKILAG-VYP------DYEGQIFLEGKE 75
Query: 148 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK-VDEVGKFE---------E 197
+N E +NG + PQ +DL+P + L ++ V+E G E +
Sbjct: 76 VRFRNPREAQENGI---ALIPQELDLVPNLSSAENIFLSREPVNEFGVIEYQKMFEQASK 132
Query: 198 VVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI 257
+ +L + ++ LS + Q VAIA AL A DEP+S + R+ ++ +I
Sbjct: 133 LFSKLGVNIDPKTKVEDLSTSQQQMVAIAKALSLDAKIIIMDEPTSAIGKRETEQLFNII 192
Query: 258 RRLANEGKAVLVVEHDLAVLDYLSDVIHVV-----YGEPGVYGIFSKPKGTRNGINEFLQ 312
R L NEGK+V+ + H L + ++D + V+ GE G F K R + +
Sbjct: 193 RSLKNEGKSVIYISHRLEEIFEIADRVVVMRDGRKVGE-GPIEEFDHDKLVRLMVGRSID 251
Query: 313 GYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIG 372
+ E T RV+ + ++ +L+ D SF +RKGEV+G
Sbjct: 252 QFFIKERA-------TITDEIFRVEGIKLWSLDRKKLLVDDVSF-------YVRKGEVLG 297
Query: 373 IVGPNGIGKTTFVKMLAGVEE-PTEGKV--EWDLTVAYKPQYIKAEYEGTVYE------- 422
I G G G+T ++ + G TEGKV + P+ G V E
Sbjct: 298 IYGLVGAGRTELLEAIFGAHPGRTEGKVFIGGKEIKIHSPRDAVKNGIGLVPEDRKTAGL 357
Query: 423 --LLSKIDSSKLNSNFYKTELLKPLGIIDLYDRN--------------------VEDLSG 460
+S + + L S K +++ G+ID VE+LSG
Sbjct: 358 ILQMSVLHNITLPSVVMKL-IVRKFGLIDSQLEKEIVRSFIEKLNIKTPSPYQIVENLSG 416
Query: 461 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 520
G Q+V +A L + LLDEP+ +DV + + + I M + ++V ++
Sbjct: 417 GNQQKVVLAKWLAIKPKVLLLDEPTRGIDVNAKSEIYKLISE-MAVSGMGVVMVSSELPE 475
Query: 521 IDYVSDRLIV 530
I +SDR++V
Sbjct: 476 ILAMSDRILV 485
>sp|P45535|YHES_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YHES
>gi|7445654|pir||C65129 hypothetical ABC transporter in
kifb-prkb intergenic region - Escherichia coli (strain
K-12) >gi|606286|gb|AAA58149.1| (U18997) ORF_o637
[Escherichia coli] >gi|1789751|gb|AAC76377.1| (AE000411)
putative ATP-binding component of a transport system
[Escherichia coli K12]
Length = 637
Score = 90.9 bits (222), Expect = 4e-17
Identities = 124/568 (21%), Positives = 235/568 (40%), Gaps = 96/568 (16%)
Query: 86 RYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDN--DSWDNVIR 143
R GV + + G VG+VG NG GK+T + +L ++ + SW
Sbjct: 10 RRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGSWQ---L 66
Query: 144 AFRGNEL----QNYFERLKNGEIR-PVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEV 198
A+ E Q E + +G+ ++ Q D + + + K+D + +
Sbjct: 67 AWVNQETPALPQAALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWSIR 126
Query: 199 VKELEL-------ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRL 251
+ L L+R + SGG R+ +A AL+ ++ DEP+++LD+ +
Sbjct: 127 SRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVI 186
Query: 252 KVARVIRRLANEGKAVLVVEHDLAVLDYLSD-VIHV----VYGEPGVYGIFSKPKGTRNG 306
+ + ++ ++++ HD LD + D +IH+ ++ G Y F + TR
Sbjct: 187 WLEKWLKSYQG---TLILISHDRDFLDPIVDKIIHIEQQSMFEYTGNYSSFEVQRATRLA 243
Query: 307 INEFLQGYLKDENVRFRPYEIRF-------------TKLSERVDVERETLVEYP------ 347
+ + ++ + Y RF K+ ER+++ V+ P
Sbjct: 244 QQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFRFSFR 303
Query: 348 -------------RLVKDYG------SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKML 388
++ YG S KL + P G IG++G NG GK+T +K+L
Sbjct: 304 APESLPNPLLKMEKVSAGYGDRIILDSIKLNLVP-----GSRIGLLGRNGAGKSTLIKLL 358
Query: 389 AGVEEPTEGK------VEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELL 442
AG P G+ ++ ++ +Y++A+ E + L ++L + +L
Sbjct: 359 AGELAPVSGEIGLAKGIKLGYFAQHQLEYLRAD-ESPIQHL------ARLAPQELEQKLR 411
Query: 443 KPLGII----DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 498
LG D SGGE R+ +A + + ++ LLDEP+ +LD++ R A++
Sbjct: 412 DYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTE 471
Query: 499 AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPM-GMREGMNRFLAS 557
A+ E +VV HD ++ +D L + H R + P G E ++L+
Sbjct: 472 ALIEF----EGALVVVSHDRHLLRSTTDDLYLV------HDRKVEPFDGDLEDYQQWLSD 521
Query: 558 VGITFRRDPDSGRPRANKEGSVKDREQK 585
V + ++ + AN + KD++++
Sbjct: 522 VQKQENQTDEAPKENANSAQARKDQKRR 549
>pir||H82377 ABC transporter, ATP-binding protein VCA1101 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658548|gb|AAF96993.1| (AE004435) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 486
Score = 90.9 bits (222), Expect = 4e-17
Identities = 100/448 (22%), Positives = 187/448 (41%), Gaps = 50/448 (11%)
Query: 108 IVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 167
I+G G+GK+ +LA +I NL S + L ++ + R +
Sbjct: 61 ILGETGSGKS----LLANAIIGNLPAGLRSQGKIA-------LFGQYQHQRTQAEREALW 109
Query: 168 PQYVDLLPKAVKGKVRELLKKVDEVGKFEEVV---------------KELELENVLDREL 212
+ + +LP+ + +++ ++V + +V +++ L L +
Sbjct: 110 GKQLAVLPQEPWHALNPIMRAGEQVAEVHRLVMGNHAASAALTDSAFQQVALHQDLSKYP 169
Query: 213 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 272
HQLSGG QRVA A +A DEP+ LD +R ++ +++ G A+L + H
Sbjct: 170 HQLSGGMAQRVAYLCATQTQAPLLIADEPTKGLDASRRDQIIALLQAQLTRG-ALLTITH 228
Query: 273 DLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLK---DENVRFRPYEIRF 329
D+ V + L I V+ G+ + + ++ Y K + + R+ P +
Sbjct: 229 DIEVAEKLGGTIIVMRK-----GVIQEQGPAQQVLSHPQSDYTKALINADPRYWPTTPQS 283
Query: 330 TKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLA 389
+ V+ + + + D SF L GE++GI G +G GK+T +L
Sbjct: 284 KTGEPLLTVDNIAMHRGEKCLFDSLSFTLSA-------GEILGISGDSGCGKSTLADLLL 336
Query: 390 GVEEPTEGKVEWDLTVA-------YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELL 442
G+ +P++G++ + Y+ T+ LL + LL
Sbjct: 337 GLLKPSQGRIHRLQAIPLGKALKLYQDPPSALAKSVTLQTLLEDVCRQHSVERSQIPRLL 396
Query: 443 KPLGII-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 501
+ L + +L R +SGGELQR AI LL + + DEP++ LD + + I
Sbjct: 397 ERLALSPNLLSRKANQVSGGELQRFAILRALLTRPTLLVADEPTSRLDPITAASTLQLII 456
Query: 502 HLMEKNEKTALVVEHDVLMIDYVSDRLI 529
L ++ +++ HD L ++ R++
Sbjct: 457 ELTQEIGCALVLISHDKLALEKTCHRVL 484
>emb|CAC14366.1| (AL445963) Fe uptake system permease [Streptomyces coelicolor]
Length = 272
Score = 90.5 bits (221), Expect = 5e-17
Identities = 66/186 (35%), Positives = 91/186 (48%), Gaps = 25/186 (13%)
Query: 366 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE------WDL-------TVAYKPQYI 412
R GEVIG+VGPNG GK++ ++ + + PT G+V W L TVA Q
Sbjct: 29 RPGEVIGLVGPNGSGKSSLLRAVYRILRPTTGQVSVDGTDAWSLPVRQLARTVAAVVQES 88
Query: 413 KAEYEGTVYELLSK--------IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQ 464
AE+E TV E+++ +D L + DL R + LSGGE Q
Sbjct: 89 GAEFELTVREVVAMGRTPHKRLLDGDTAEDAGLIRSALTAVDATDLAHRPFDQLSGGERQ 148
Query: 465 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 524
RV IA L + + +LDEP+ +LD+ +L V A+R L T LV HD+ + Y
Sbjct: 149 RVLIARALAQQPSLLVLDEPTNHLDIRHQLDVLGALRRL----PATVLVALHDLNLAAYY 204
Query: 525 SDRLIV 530
DRL V
Sbjct: 205 CDRLYV 210
>pir||E72378 sugar ABC transporter, ATP-binding protein - Thermotoga maritima
(strain MSB8) >gi|4980927|gb|AAD35506.1|AE001721_5
(AE001721) sugar ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 359
Score = 90.1 bits (220), Expect = 6e-17
Identities = 65/212 (30%), Positives = 109/212 (50%), Gaps = 22/212 (10%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--LTVAYKPQYIKAEY----- 416
E++ GE + ++GP+G GKTT + MLAG+ +PT G++ +D L P+Y +
Sbjct: 25 EVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNY 84
Query: 417 ----EGTVYELLS------KIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV 466
TV+E ++ +I ++ E+ + L I +L DR LSGG+ QRV
Sbjct: 85 ALYPHMTVFENIAFPLRARRISKDEVEKRV--VEIARKLLIDNLLDRKPTQLSGGQQQRV 142
Query: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 526
A+A L++ + L DEP + LD R+ + I+HL ++ T++ V HD ++
Sbjct: 143 ALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMAS 202
Query: 527 RLIVF-EGEPGRHGRALPPMGMREGMNRFLAS 557
R+ VF +G+ ++G P N F+AS
Sbjct: 203 RIAVFNQGKLVQYG--TPDEVYDSPKNMFVAS 232
Score = 81.1 bits (197), Expect = 3e-14
Identities = 94/325 (28%), Positives = 144/325 (43%), Gaps = 67/325 (20%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE---DNDSWDNVIRAFR--GNELQNYF 154
VKDG V ++GP+G GKTT + +LAG P E D+ +++ +R G QNY
Sbjct: 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNY- 84
Query: 155 ERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK-FEEVVKELELENVLDRELH 213
+ P A + R + K DEV K E+ ++L ++N+LDR+
Sbjct: 85 ----------ALYPHMTVFENIAFPLRARRISK--DEVEKRVVEIARKLLIDNLLDRKPT 132
Query: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEH 272
QLSGG+ QRVA+A AL+++ FDEP S LD R+ + I+ L E G + V H
Sbjct: 133 QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTH 192
Query: 273 DLAVLDYLSDVIHVV-------YGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRF-RP 324
D A ++ I V YG P ++ PK N F+ ++ + F R
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGTPD--EVYDSPK------NMFVASFIGNPPTNFLRD 244
Query: 325 YEIR-------------FTKLSERVDVERETLV-----EYPRLVKDYGSFKLE-----VE 361
+ + KL E VDV+ + +V E+ R+ ++ + VE
Sbjct: 245 FSVSVENKQTILKRDDVIIKLPEPVDVKLKEVVVGIRPEHCRISRERVENSIPGVVYVVE 304
Query: 362 P--------GEIRKGEVIGIVGPNG 378
P + KGE+I + G G
Sbjct: 305 PLGRDIIVNVKTEKGEIIKVFGDTG 329
>pir||H71241 probable multiple sugar-binding transport ATP-binding protein -
Pyrococcus horikoshii >gi|3256580|dbj|BAA29263.1|
(AP000001) 375aa long hypothetical multiple
sugar-binding transport ATP-binding protein [Pyrococcus
horikoshii]
Length = 375
Score = 90.1 bits (220), Expect = 6e-17
Identities = 54/190 (28%), Positives = 100/190 (52%), Gaps = 25/190 (13%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------------------EWDLT 404
EI+ GE + ++GP+G GKTT ++M+AG+EEPT G++ E D+
Sbjct: 28 EIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVA 87
Query: 405 VAYKPQYIKAE---YEGTVYEL-LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSG 460
+ ++ + Y+ + L L K+ +++ E+ + LG+ +L +R +LSG
Sbjct: 88 MVFQSYALYPHMTVYDNIAFPLKLRKVPKQEIDKRV--REVAEMLGLTELLNRKPRELSG 145
Query: 461 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 520
G+ QRVA+ ++R ++L+DEP + LD + R+ + ++ L + T + V HD +
Sbjct: 146 GQRQRVALGRAIIRRPKVFLMDEPLSNLDAKLRVKMRAELKKLQRQLGVTTIYVTHDQVE 205
Query: 521 IDYVSDRLIV 530
+ DR+ V
Sbjct: 206 AMTMGDRIAV 215
Score = 73.4 bits (177), Expect = 7e-12
Identities = 66/237 (27%), Positives = 115/237 (47%), Gaps = 29/237 (12%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN----LCEDN---DSWDNVIRAFRGNELQN 152
+KDG + ++GP+G GKTT ++++AG P EDN D V + ++
Sbjct: 29 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAM 88
Query: 153 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLK-KVDEVGKFEEVVKELELENVLDRE 211
F+ + P A K+R++ K ++D+ + EV + L L +L+R+
Sbjct: 89 VFQSY-------ALYPHMTVYDNIAFPLKLRKVPKQEIDK--RVREVAEMLGLTELLNRK 139
Query: 212 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVV 270
+LSGG+ QRVA+ A++R+ + DEP S LD + R+K+ +++L + G + V
Sbjct: 140 PRELSGGQRQRVALGRAIIRRPKVFLMDEPLSNLDAKLRVKMRAELKKLQRQLGVTTIYV 199
Query: 271 EHDLAVLDYLSDVIHVV-YGEPGVYG----IFSKPKGTRNGINEFLQGYLKDENVRF 322
HD + D I V+ GE G ++ KP +N F+ G++ + F
Sbjct: 200 THDQVEAMTMGDRIAVMNKGELQQVGTPDEVYYKP------VNTFVAGFIGSPPMNF 250
>dbj|BAA75384.1| (AB013374) MsmX [Bacillus halodurans]
Length = 349
Score = 90.1 bits (220), Expect = 6e-17
Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 19/184 (10%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQY-IKAEYEG----- 418
I KGE+I ++GP+G GKTT ++M+AG E+PT G ++ V Y+ Q+ + E G
Sbjct: 28 IEKGEIIALLGPSGCGKTTTLRMIAGFEQPTSGSIKIGGEVVYENQFTVPPEKRGIGMVF 87
Query: 419 TVYELLSKIDSSKLNSNF------------YKTELLKPLGIIDLYDRNVEDLSGGELQRV 466
Y L + +K N F E+L+ +G+ D R +LSGG+ QRV
Sbjct: 88 QDYALFPHLTIAK-NVMFGLSKWGTRAKRERAKEVLELVGLADYAARYPHELSGGQQQRV 146
Query: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 526
A+A L + L+DEP + LD R + + ++ K TA++V HD V+D
Sbjct: 147 ALARALAPKPHVVLMDEPFSNLDAGLREKMRFEVTTILRKANATAIIVTHDQKDAFAVAD 206
Query: 527 RLIV 530
R++V
Sbjct: 207 RVVV 210
>dbj|BAB04231.1| (AP001508) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 349
Score = 90.1 bits (220), Expect = 6e-17
Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 19/184 (10%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQY-IKAEYEG----- 418
I KGE+I ++GP+G GKTT ++M+AG E+PT G ++ V Y+ Q+ + E G
Sbjct: 28 IEKGEIIALLGPSGCGKTTTLRMIAGFEQPTSGSIKIGGEVVYENQFTVPPEKRGIGMVF 87
Query: 419 TVYELLSKIDSSKLNSNF------------YKTELLKPLGIIDLYDRNVEDLSGGELQRV 466
Y L + +K N F E+L+ +G+ D R +LSGG+ QRV
Sbjct: 88 QDYALFPHLTIAK-NVMFGLSKWGTRAKRERAKEVLELVGLADYAARYPHELSGGQQQRV 146
Query: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 526
A+A L + L+DEP + LD R + + ++ K TA++V HD V+D
Sbjct: 147 ALARALAPKPHVVLMDEPFSNLDAGLREKMRFEVTTILRKANATAIIVTHDQKDAFAVAD 206
Query: 527 RLIV 530
R++V
Sbjct: 207 RVVV 210
>pir||T40080 probable ABC transporter - fission yeast (Schizosaccharomyces
pombe) >gi|3006145|emb|CAA18386.1| (AL022299) putative
ABC transporter subunit [Schizosaccharomyces pombe]
Length = 736
Score = 89.7 bits (219), Expect = 8e-17
Identities = 97/351 (27%), Positives = 156/351 (43%), Gaps = 53/351 (15%)
Query: 216 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA 275
SGG R+++A AL + DEPS+ LD+ ++ ++ N VLVV HD +
Sbjct: 356 SGGWRMRLSLARALFCQPDLLLLDEPSNMLDVPSIAFLSEYLQTYKN---IVLVVSHDRS 412
Query: 276 VLDYLS-DVIHVVYGEPGVY-GIFSKPKGTR-----NGINEF---------LQGYL---- 315
L+ ++ D+IH Y G FS+ TR N + E+ LQ ++
Sbjct: 413 FLNEVATDIIHQHSERLDYYKGNFSQFYATREERCKNQLREYEKQMEYRKHLQSFIDKFR 472
Query: 316 ----KDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVK------DYGSFKLEVEPG-- 363
K + R ++ + E+ E E E+P + K E PG
Sbjct: 473 YNAAKSSEAQSRIKKLEKLPILEKPQTEEEVEFEFPPVEKISPPILQMSDVNFEYVPGHP 532
Query: 364 -------EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--LTVAYKPQYIKA 414
+++ IG+VGPNG GK+T +K+L PT G V L +AY Q+
Sbjct: 533 ILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLHPTSGIVSRHPRLRIAYFAQHHVD 592
Query: 415 EYEGTVYEL--LSKIDSSKLNSNFYKTELLKPLGIID-LYDRNVEDLSGGELQRVAIAAT 471
+ + L L+K K + + L G+ L + + LSGG+ RVA A
Sbjct: 593 TLDLNLNALSFLAKTFPGKGEEEYRRH--LGAFGVSGPLALQKMITLSGGQKSRVAFACL 650
Query: 472 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 522
L++ I +LDEP+ +LD+E A++RA++ + ++V HDV +D
Sbjct: 651 GLQNPHILILDEPTNHLDMESMDALTRAVKRF----QGGVILVSHDVDFLD 697
>pir||S75652 ABC-type transport protein sll1878 - Synechocystis sp. (strain PCC
6803) >gi|1653298|dbj|BAA18213.1| (D90912) ABC
transporter [Synechocystis sp.]
Length = 368
Score = 89.3 bits (218), Expect = 1e-16
Identities = 66/211 (31%), Positives = 106/211 (49%), Gaps = 24/211 (11%)
Query: 368 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---------LTVAYKPQYIKAEYEG 418
GE++G++GP+G GKTT ++++AG E PT G V + LT + Q +
Sbjct: 46 GEILGLLGPSGCGKTTLLRIIAGFETPTSGTVHLEGDCVSGENGLTPPEQRQTGMVFQDY 105
Query: 419 TVYELLSKID---------SSKLNSNFYK---TELLKPLGIIDLYDRNVEDLSGGELQRV 466
++ L+ D S KLN + E+L +G+ L R +LSGG+ QR+
Sbjct: 106 ALFPHLTITDNIAFGLRHKSQKLNRQQIQGRVAEVLHLVGLTGLEKRYPHELSGGQQQRI 165
Query: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 526
A+A L ++ LLDEP + LDV+ R + IRH+++ A+ V HD +SD
Sbjct: 166 ALARALAPKPNLILLDEPLSNLDVQVRQRLRHEIRHILKATGTAAIFVTHDQEEAMAISD 225
Query: 527 RL-IVFEGEPGRHGRALPPMGMREGMNRFLA 556
R+ +++ G + G P R +RF+A
Sbjct: 226 RIGVMYRGNLEQIG--TPEEIYRSPASRFVA 254
Score = 71.4 bits (172), Expect = 3e-11
Identities = 58/192 (30%), Positives = 96/192 (49%), Gaps = 12/192 (6%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIP-----NLCEDNDSWDNVIRAFRGNELQNYFERL 157
G ++G++GP+G GKTT ++I+AG P +L D S +N + + F+
Sbjct: 46 GEILGLLGPSGCGKTTLLRIIAGFETPTSGTVHLEGDCVSGENGLTPPEQRQTGMVFQ-- 103
Query: 158 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSG 217
+ D + ++ K ++L ++ + G+ EV+ + L + R H+LSG
Sbjct: 104 ---DYALFPHLTITDNIAFGLRHKSQKLNRQQIQ-GRVAEVLHLVGLTGLEKRYPHELSG 159
Query: 218 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR-LANEGKAVLVVEHDLAV 276
G+ QR+A+A AL K + DEP S LD++ R ++ IR L G A + V HD
Sbjct: 160 GQQQRIALARALAPKPNLILLDEPLSNLDVQVRQRLRHEIRHILKATGTAAIFVTHDQEE 219
Query: 277 LDYLSDVIHVVY 288
+SD I V+Y
Sbjct: 220 AMAISDRIGVMY 231
>pir||D64507 methyl coenzyme M reductase system, component A2 homolog -
Methanococcus jannaschii
Length = 558
Score = 89.3 bits (218), Expect = 1e-16
Identities = 79/315 (25%), Positives = 144/315 (45%), Gaps = 41/315 (13%)
Query: 101 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN-------ELQNY 153
K G ++GIVG +G GK+T ++IL G L D D + I + N LQ
Sbjct: 30 KKGEILGIVGKSGAGKSTLIRILRGSL------DYDEGEVEILGRKDNFKEITAIHLQRN 83
Query: 154 FERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFE----EVVKELELENVLD 209
F I +++ Y A++ E L +E ++E E++K + LE+ D
Sbjct: 84 FALWAEPVINNIIRKLY------AIRNNADEQLPLEEEWEEYEKTAIEILKLVGLEHKKD 137
Query: 210 RELHQLSGGELQRVAIA---AALLRKAH-FYFFDEPSSYLDIRQRLKVARVIRRLANE-G 264
+ LSGGE QR+ + A + K DEP++ + K+ VI+ + ++ G
Sbjct: 138 AFANILSGGEKQRLILGRQIAKIYEKGEGVLLLDEPATMACPASKQKLLDVIKNIRDKLG 197
Query: 265 KAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRP 324
V++ H + YL D + ++ G +NEFL+ + +P
Sbjct: 198 ITVIITSHLPEIHRYLCDRLILLEN-----GKVKMDGDVEEVLNEFLK--------KMKP 244
Query: 325 YEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTF 384
R + + ++ + + +V + L ++++GE++ I+GP+G+GKT
Sbjct: 245 PYKRTPNIKDNAIIQVRNVSKRYYVVHGGETLNLRNVSFDVKEGEILSIIGPSGVGKTVI 304
Query: 385 VKMLAGVEEPTEGKV 399
++++AG+E P EGK+
Sbjct: 305 MRLMAGLELPDEGKI 319
Score = 81.5 bits (198), Expect = 2e-14
Identities = 68/250 (27%), Positives = 119/250 (47%), Gaps = 31/250 (12%)
Query: 344 VEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE-- 400
V+ L K YG FK L+ E +KGE++GIVG +G GK+T +++L G + EG+VE
Sbjct: 7 VKVKNLTKKYGDFKALDKVSFEAKKGEILGIVGKSGAGKSTLIRILRGSLDYDEGEVEIL 66
Query: 401 ------WDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSN-----------FYKT--EL 441
++T + + E + ++ K+ + + N++ + KT E+
Sbjct: 67 GRKDNFKEITAIHLQRNFALWAEPVINNIIRKLYAIRNNADEQLPLEEEWEEYEKTAIEI 126
Query: 442 LKPLGIIDLYDRNVEDLSGGELQRV----AIAATLLRDADIYLLDEPSAYLDVEQRLAVS 497
LK +G+ D LSGGE QR+ IA + + LLDEP+ + +
Sbjct: 127 LKLVGLEHKKDAFANILSGGEKQRLILGRQIAKIYEKGEGVLLLDEPATMACPASKQKLL 186
Query: 498 RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLAS 557
I+++ +K T ++ H + Y+ DRLI+ E +G+ + E +N FL
Sbjct: 187 DVIKNIRDKLGITVIITSHLPEIHRYLCDRLILLE-----NGKVKMDGDVEEVLNEFLKK 241
Query: 558 VGITFRRDPD 567
+ ++R P+
Sbjct: 242 MKPPYKRTPN 251
>pir||T35675 probable ABC-transport system ATP binding protein - Streptomyces
coelicolor >gi|2661682|emb|CAA15787.1| (AL009199)
probable ABC-transport system ATP binding protein
[Streptomyces coelicolor A3(2)]
Length = 260
Score = 89.3 bits (218), Expect = 1e-16
Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 23/189 (12%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--LTVAYKPQYIKAEYEGTVY 421
E+ GEV+ +VG NG GK+T VK +AGV EG +EWD +P ++ TVY
Sbjct: 28 EVHAGEVVALVGDNGAGKSTLVKTIAGVHPIDEGAIEWDGRSVSINRPHDAQSLGIATVY 87
Query: 422 ELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRN--------------------VEDLSGG 461
+ L+ D+ + N Y ++ G++D + + LSGG
Sbjct: 88 QDLALCDNIDVVGNLYLGREIRRRGVLDEVEMERRSRELLDTLSIRIPSVRIPIASLSGG 147
Query: 462 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 521
+ Q VAIA ++L + + +LDEP+A L VEQ V + L E+ +++ H++ +
Sbjct: 148 QRQVVAIARSMLGEPKLVILDEPTAALGVEQTAQVLDLVERLRERGH-AVILISHNMADV 206
Query: 522 DYVSDRLIV 530
V+D++ V
Sbjct: 207 KAVADKVAV 215
>gb|AAB99680.1| (U67606) methyl coenzyme M reductase system, component A2-like
[Methanococcus jannaschii]
Length = 555
Score = 89.3 bits (218), Expect = 1e-16
Identities = 79/315 (25%), Positives = 144/315 (45%), Gaps = 41/315 (13%)
Query: 101 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN-------ELQNY 153
K G ++GIVG +G GK+T ++IL G L D D + I + N LQ
Sbjct: 27 KKGEILGIVGKSGAGKSTLIRILRGSL------DYDEGEVEILGRKDNFKEITAIHLQRN 80
Query: 154 FERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFE----EVVKELELENVLD 209
F I +++ Y A++ E L +E ++E E++K + LE+ D
Sbjct: 81 FALWAEPVINNIIRKLY------AIRNNADEQLPLEEEWEEYEKTAIEILKLVGLEHKKD 134
Query: 210 RELHQLSGGELQRVAIA---AALLRKAH-FYFFDEPSSYLDIRQRLKVARVIRRLANE-G 264
+ LSGGE QR+ + A + K DEP++ + K+ VI+ + ++ G
Sbjct: 135 AFANILSGGEKQRLILGRQIAKIYEKGEGVLLLDEPATMACPASKQKLLDVIKNIRDKLG 194
Query: 265 KAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRP 324
V++ H + YL D + ++ G +NEFL+ + +P
Sbjct: 195 ITVIITSHLPEIHRYLCDRLILLEN-----GKVKMDGDVEEVLNEFLK--------KMKP 241
Query: 325 YEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTF 384
R + + ++ + + +V + L ++++GE++ I+GP+G+GKT
Sbjct: 242 PYKRTPNIKDNAIIQVRNVSKRYYVVHGGETLNLRNVSFDVKEGEILSIIGPSGVGKTVI 301
Query: 385 VKMLAGVEEPTEGKV 399
++++AG+E P EGK+
Sbjct: 302 MRLMAGLELPDEGKI 316
Score = 81.5 bits (198), Expect = 2e-14
Identities = 68/250 (27%), Positives = 119/250 (47%), Gaps = 31/250 (12%)
Query: 344 VEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE-- 400
V+ L K YG FK L+ E +KGE++GIVG +G GK+T +++L G + EG+VE
Sbjct: 4 VKVKNLTKKYGDFKALDKVSFEAKKGEILGIVGKSGAGKSTLIRILRGSLDYDEGEVEIL 63
Query: 401 ------WDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSN-----------FYKT--EL 441
++T + + E + ++ K+ + + N++ + KT E+
Sbjct: 64 GRKDNFKEITAIHLQRNFALWAEPVINNIIRKLYAIRNNADEQLPLEEEWEEYEKTAIEI 123
Query: 442 LKPLGIIDLYDRNVEDLSGGELQRV----AIAATLLRDADIYLLDEPSAYLDVEQRLAVS 497
LK +G+ D LSGGE QR+ IA + + LLDEP+ + +
Sbjct: 124 LKLVGLEHKKDAFANILSGGEKQRLILGRQIAKIYEKGEGVLLLDEPATMACPASKQKLL 183
Query: 498 RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLAS 557
I+++ +K T ++ H + Y+ DRLI+ E +G+ + E +N FL
Sbjct: 184 DVIKNIRDKLGITVIITSHLPEIHRYLCDRLILLE-----NGKVKMDGDVEEVLNEFLKK 238
Query: 558 VGITFRRDPD 567
+ ++R P+
Sbjct: 239 MKPPYKRTPN 248
>pir||G75202 dipeptide abc transporter, dipeptide-binding protein PAB0095 -
Pyrococcus abyssi (strain Orsay)
>gi|5457579|emb|CAB49070.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 345
Score = 89.3 bits (218), Expect = 1e-16
Identities = 54/189 (28%), Positives = 97/189 (50%), Gaps = 25/189 (13%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD------------------LTVA 406
IRKGE G+ G +G GK+TF ++L + EPTEG + +D + +
Sbjct: 40 IRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIV 99
Query: 407 YKPQYIKAEYEGTVYELLSK------IDSSKLNSNFYKTELLKPLGIIDLY-DRNVEDLS 459
++ T+Y+ L + + S+ E+L+ +G+ + + R +LS
Sbjct: 100 FQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELS 159
Query: 460 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 519
GG+LQRV+IA ++ + D +LDEP++ LD+ + + + +L K T L + HD+
Sbjct: 160 GGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDIS 219
Query: 520 MIDYVSDRL 528
++ Y+SDR+
Sbjct: 220 VLQYMSDRI 228
Score = 74.5 bits (180), Expect = 3e-12
Identities = 57/201 (28%), Positives = 103/201 (50%), Gaps = 20/201 (9%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNV-IRAFRGNELQNYFERL- 157
++ G G+ G +G GK+T ++L + P E + +D + I +E++ R+
Sbjct: 40 IRKGETFGLAGESGCGKSTFGRLLLRLIEPT--EGSIYFDGIDITKLDKDEMRKLRRRMG 97
Query: 158 -----KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELEL----ENVL 208
+ P + D L + ++ + L + +E K++++V+ LE E L
Sbjct: 98 IVFQDPKSSLNP--RMTIYDTLKRPLE--IHRLAESEEE--KYDKIVEILEAVGLGEEHL 151
Query: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAV 267
R H+LSGG+LQRV+IA A++ F DEP+S LDI + ++ ++ L +
Sbjct: 152 SRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTY 211
Query: 268 LVVEHDLAVLDYLSDVIHVVY 288
L + HD++VL Y+SD I ++Y
Sbjct: 212 LFISHDISVLQYMSDRIGIMY 232
>pir||B75207 multiple sugar-binding transport ATP-binding protein msmk PAB0123 -
Pyrococcus abyssi (strain Orsay)
>gi|5457614|emb|CAB49105.1| (AJ248283) MULTIPLE
SUGAR-BINDING TRANSPORT ATP-BINDING PROTEIN MSMK
[Pyrococcus abyssi]
Length = 371
Score = 89.3 bits (218), Expect = 1e-16
Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 29/231 (12%)
Query: 351 KDYGSFKLEVEPG-EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD------- 402
K +G F E EI+ GE + ++GP+G GKTT ++M+AG+EEPT G++ D
Sbjct: 11 KKFGDFTAVKELSLEIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTIGQIYIDDKLVADP 70
Query: 403 ---LTVAYKPQYIKAEYEG-------TVYE------LLSKIDSSKLNSNFYKTELLKPLG 446
+ V K + + ++ TVY+ L K+ +++ E+ + LG
Sbjct: 71 EKGIFVPPKERDVAMVFQSYALYPHMTVYDNIAFPLKLRKVPKQEIDRRV--REVAEMLG 128
Query: 447 IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 506
+ +L R +LSGG+ QRVA+ ++R ++L+DEP + LD + R+ + ++ L +
Sbjct: 129 LTELLKRKPRELSGGQRQRVALGRAIIRRPKVFLMDEPLSNLDAKLRVKMRAELKKLQRQ 188
Query: 507 NEKTALVVEHDVLMIDYVSDRLIVF-EGEPGRHGRALPPMGMREGMNRFLA 556
T + V HD + + DR+ V GE + G P + +N F+A
Sbjct: 189 LGVTTIYVTHDQVEAMTMGDRIAVMNRGELQQVG--TPDEVYNKPLNTFVA 237
>pir||B71128 probable iron (III) dicitrate transport ATP-binding protein -
Pyrococcus horikoshii >gi|3257201|dbj|BAA29884.1|
(AP000003) 241aa long hypothetical iron (III) dicitrate
transport ATP-binding protein [Pyrococcus horikoshii]
Length = 241
Score = 88.9 bits (217), Expect = 1e-16
Identities = 62/197 (31%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 353 YGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--------- 402
YG+F+ L + +KGE++ I+GPNG GK+T +K +AG+ +P GK+ +D
Sbjct: 15 YGNFEALRDVKFKAKKGELLAIIGPNGSGKSTLLKCIAGILKP-RGKIVYDGINLLNLKP 73
Query: 403 ----LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDL 458
V+Y PQ ++ TV E + ++ + + + LK +G+++ + L
Sbjct: 74 KERAKIVSYVPQSSFPQFSFTVEEFV-ELGTYARGGDI--EDALKRVGLVEKRHELITRL 130
Query: 459 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 518
SGGE Q IA L + +++ LLDEP+++LD+ V ++ L K EK + V HD+
Sbjct: 131 SGGEYQLALIARALAQGSEVMLLDEPTSHLDINHTKKVIEILQEL--KKEKLIIAVFHDL 188
Query: 519 -LMIDYVSDRLIVFEGE 534
L I+Y + L++ GE
Sbjct: 189 NLAINYSDELLVLKNGE 205
Score = 74.5 bits (180), Expect = 3e-12
Identities = 59/193 (30%), Positives = 99/193 (50%), Gaps = 19/193 (9%)
Query: 101 KDGMVVGIVGPNGTGKTTAVKILAGQLIPN--LCEDNDSWDNVIRAFRGNELQNYFERLK 158
K G ++ I+GPNG+GK+T +K +AG L P + D + N+ R ++ +Y +
Sbjct: 29 KKGELLAIIGPNGSGKSTLLKCIAGILKPRGKIVYDGINLLNLKPKERA-KIVSYVPQSS 87
Query: 159 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGG 218
+ V+ ++V+L A G + + LK+V V K E++ +LSGG
Sbjct: 88 FPQFSFTVE-EFVELGTYARGGDIEDALKRVGLVEKRHELIT-------------RLSGG 133
Query: 219 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVL 277
E Q IA AL + + DEP+S+LDI KV +++ L E K ++ V HDL +
Sbjct: 134 EYQLALIARALAQGSEVMLLDEPTSHLDINHTKKVIEILQELKKE-KLIIAVFHDLNLAI 192
Query: 278 DYLSDVIHVVYGE 290
+Y +++ + GE
Sbjct: 193 NYSDELLVLKNGE 205
>emb|CAA91229.1| (Z56283) orf1 [Lactobacillus helveticus]
Length = 444
Score = 88.5 bits (216), Expect = 2e-16
Identities = 100/440 (22%), Positives = 192/440 (42%), Gaps = 51/440 (11%)
Query: 108 IVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 167
++GP G GK+T +KI+AG L P ++ QN E+ R +
Sbjct: 27 LIGPTGCGKSTLLKIIAG-LYPKYAGKLTGKIDLHGQKAAMMFQNAAEQFTMTTPREEII 85
Query: 168 PQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAA 227
+L +K K +L ++ V+ ++ ++LD++++ LSGG+ Q VA+A
Sbjct: 86 FALENL---QIKAKDYDL--------HIKKAVEFTKIADLLDQKINTLSGGQQQHVALAV 134
Query: 228 ALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV 287
+ + DEP + D R + + LA G+ +++ +H L + + D ++
Sbjct: 135 LIAMDVDVFLLDEPFASCDPNTRHFLIEKLASLAETGRTIILSDHVLDDYEKICDHLYQF 194
Query: 288 YGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVE-RETLVEY 346
G+ T ++ + L +N +F F + E +T ++
Sbjct: 195 EGK------------TVKELSANEKNKLFKQNKQFHEQSYSFALPTGTPVFELNKTQIKQ 242
Query: 347 PRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG--------- 397
RL+ K+ G+ I G NG+GKT+ K + + P +G
Sbjct: 243 NRLLLKQNKLKIY--------GKTTLITGSNGVGKTSLFKAMTKMI-PYKGNFTYLDNEI 293
Query: 398 -KVEWDLTVAYKPQYI-KAEYEGTVYELLSKIDSSKLNSNFYKT-----ELLKPLGIIDL 450
K+++ ++ Q+ KA + + +I+ SK + N + T E L+ L +
Sbjct: 294 SKIKYRKYLSQIAQFFQKASDQFLTVTVKDEIELSKKDRNNFFTDAKIDEWLEKLQLKQH 353
Query: 451 YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 510
D+ V LSGG+ +++ I L+ ++ L+DEP + LD E V + ++ EK ++T
Sbjct: 354 LDQVVYSLSGGQQKKLQILLMLMTKHNVLLIDEPLSGLDHESVDLVLQLMQECQEKLQQT 413
Query: 511 ALVVEHDV-LMIDYVSDRLI 529
L++ H + + D+ RL+
Sbjct: 414 FLIISHQIDALADFCDYRLV 433
Score = 71.4 bits (172), Expect = 3e-11
Identities = 48/172 (27%), Positives = 87/172 (49%), Gaps = 11/172 (6%)
Query: 373 IVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTV-----AYKPQYIKAEYEGTV--YELLS 425
++GP G GK+T +K++AG+ GK+ + + A Q ++ T E++
Sbjct: 27 LIGPTGCGKSTLLKIIAGLYPKYAGKLTGKIDLHGQKAAMMFQNAAEQFTMTTPREEIIF 86
Query: 426 KIDSSKLNSNFYKTELLKPLG---IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 482
+++ ++ + Y + K + I DL D+ + LSGG+ Q VA+A + D D++LLD
Sbjct: 87 ALENLQIKAKDYDLHIKKAVEFTKIADLLDQKINTLSGGQQQHVALAVLIAMDVDVFLLD 146
Query: 483 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGE 534
EP A D R + + L E +T ++ +H + + + D L FEG+
Sbjct: 147 EPFASCDPNTRHFLIEKLASLAETG-RTIILSDHVLDDYEKICDHLYQFEGK 197
>gi|11498246 nitrate ABC transporter, ATP-binding protein (nrtC-2)
[Archaeoglobus fulgidus] >gi|7445947|pir||F69329 nitrate
ABC transporter, ATP-binding protein (nrtC-2) homolog -
Archaeoglobus fulgidus >gi|2649976|gb|AAB90598.1|
(AE001060) nitrate ABC transporter, ATP-binding protein
(nrtC-2) [Archaeoglobus fulgidus]
Length = 235
Score = 88.5 bits (216), Expect = 2e-16
Identities = 60/193 (31%), Positives = 101/193 (52%), Gaps = 6/193 (3%)
Query: 349 LVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTV 405
L K YG+ + L+ + KGE + ++G +G GKTT +K++AG+E+P G+VE+ +
Sbjct: 12 LKKSYGNLRVLDGVTFSVEKGEFVCLIGESGCGKTTILKIIAGLEKPDGGRVEFAGGARM 71
Query: 406 AYKPQYIKAEYEGTVY-ELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQ 464
+ Q + TVY +L + +S + E++ +G+ + + LSGG Q
Sbjct: 72 GFVFQDDRLLPWKTVYGNILFALRASGIEDGGVVREIIDAVGLRGFENYYPKQLSGGMRQ 131
Query: 465 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 524
RV IA L + D+ L+DEP A LD R + + ++E KT + V H + Y+
Sbjct: 132 RVGIARALAVNPDLLLMDEPFASLDARTRERMQEELLRIVE--GKTVVFVTHSIDEAVYL 189
Query: 525 SDRLIVFEGEPGR 537
+DR++V P R
Sbjct: 190 ADRVVVLSPRPSR 202
>pir||E82959 zinc transport protein ZnuC PA5500 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951835|gb|AAG08885.1|AE004962_9 (AE004962) zinc
transport protein ZnuC [Pseudomonas aeruginosa]
Length = 269
Score = 88.2 bits (215), Expect = 2e-16
Identities = 54/170 (31%), Positives = 93/170 (53%), Gaps = 9/170 (5%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYKPQ--YIKAEYEGT 419
I G+++ ++GPNG GKTT V+ + G+ +P G+V W LT+ Y PQ ++ A +
Sbjct: 28 IEPGQIVTLIGPNGAGKTTLVRSVLGLLKPHVGEV-WRRPRLTIGYMPQKLHVDATLPLS 86
Query: 420 VYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIY 479
V L + K L+ +G + +R ++ +SGGELQRV +A LLR ++
Sbjct: 87 VLRFLRLVPGVKREQAL---AALREVGAAHVLERPLQSISGGELQRVLLARALLRKPELL 143
Query: 480 LLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 529
+LDEP +DV + + R I L ++ L+V HD+ ++ +D+++
Sbjct: 144 VLDEPVQGVDVAGQAELYRLIGKLRDRYGCGVLMVSHDLHLVMSATDQVV 193
Score = 77.6 bits (188), Expect = 4e-13
Identities = 59/188 (31%), Positives = 96/188 (50%), Gaps = 26/188 (13%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYF--ERL 157
++ G +V ++GPNG GKTT V+ + G L P++ E +R L + ++L
Sbjct: 28 IEPGQIVTLIGPNGAGKTTLVRSVLGLLKPHVGE----------VWRRPRLTIGYMPQKL 77
Query: 158 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSG 217
P+ +++ L+P K + L + EVG +VL+R L +SG
Sbjct: 78 HVDATLPLSVLRFLRLVPGV---KREQALAALREVG----------AAHVLERPLQSISG 124
Query: 218 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHDLAV 276
GELQRV +A ALLRK DEP +D+ + ++ R+I +L + G VL+V HDL +
Sbjct: 125 GELQRVLLARALLRKPELLVLDEPVQGVDVAGQAELYRLIGKLRDRYGCGVLMVSHDLHL 184
Query: 277 LDYLSDVI 284
+ +D +
Sbjct: 185 VMSATDQV 192
>sp|Q00752|MSMK_STRMU MULTIPLE SUGAR-BINDING TRANSPORT ATP-BINDING PROTEIN MSMK
>gi|282320|pir||E42400 ABC-type transport system
ATP-binding protein msmK [validated] - Streptococcus
mutans >gi|153741|gb|AAA26938.1| (M77351) ATP-binding
protein [Streptococcus mutans]
Length = 377
Score = 87.8 bits (214), Expect = 3e-16
Identities = 57/191 (29%), Positives = 100/191 (51%), Gaps = 15/191 (7%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTV----AYKPQYIKAEYEG- 418
+I+ E I VGP+G GK+T ++M+AG+E+ T+G+++ D V A K + I ++
Sbjct: 27 DIKNKEFIVFVGPSGCGKSTTLRMVAGLEDITKGELKIDGEVVNDKAPKDRDIAMVFQNY 86
Query: 419 TVYELLSKIDSSK--LNSNFYKTELLKP--------LGIIDLYDRNVEDLSGGELQRVAI 468
+Y +S D+ L Y E + LG+ + +R DLSGG+ QRVA+
Sbjct: 87 ALYPHMSVYDNMAFGLKLRHYSKEAIDKRVKEAAQILGLTEFLERKPADLSGGQRQRVAM 146
Query: 469 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 528
++RDA ++L+DEP + LD + R+++ I + + T + V HD ++DR+
Sbjct: 147 GRAIVRDAKVFLMDEPLSNLDAKLRVSMRAEIAKIHRRIGATTIYVTHDQTEAMTLADRI 206
Query: 529 IVFEGEPGRHG 539
++ G
Sbjct: 207 VIMSSTKNEDG 217
>pir||C70355 ABC transporter - Aquifex aeolicus >gi|2983231|gb|AAC06828.1|
(AE000698) ABC transporter [Aquifex aeolicus]
Length = 232
Score = 87.8 bits (214), Expect = 3e-16
Identities = 60/190 (31%), Positives = 99/190 (51%), Gaps = 24/190 (12%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-----------EWDLTVAYKPQYIK 413
+ KG+ +GIVGPNG GK+T +K++ G +P G++ +W V Y PQ +
Sbjct: 27 VEKGDFLGIVGPNGAGKSTLLKLILGFLKPKSGEIYLFGKKIEEFKDWK-RVGYVPQRLS 85
Query: 414 AE--YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 471
E + GTV ELLS + K + Y E LK I+ ++ LSGG+ QRV +A
Sbjct: 86 VEHAFPGTVKELLSSVCEDKKEID-YLVEFLKLKNIV---NKQFTKLSGGQQQRVLLAMA 141
Query: 472 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVS----- 525
L + ++ LLDEP+ LDV + L ++K+ +++ HD+ ++ + S
Sbjct: 142 LSYNPELILLDEPTVGLDVHAINHFMSILLDLNMNHKKSIVMISHDIGTLLKHASKILCL 201
Query: 526 DRLIVFEGEP 535
++ + + GEP
Sbjct: 202 NKKVCYFGEP 211
Score = 77.3 bits (187), Expect = 5e-13
Identities = 57/180 (31%), Positives = 96/180 (52%), Gaps = 17/180 (9%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
V+ G +GIVGPNG GK+T +K++ G L P E I F G +++ + + +
Sbjct: 27 VEKGDFLGIVGPNGAGKSTLLKLILGFLKPKSGE--------IYLF-GKKIEEFKDWKRV 77
Query: 160 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK-FEEVVKELELENVLDRELHQLSGG 218
G + PQ + + A G V+ELL V E K + +V+ L+L+N+++++ +LSGG
Sbjct: 78 GYV-----PQRLSV-EHAFPGTVKELLSSVCEDKKEIDYLVEFLKLKNIVNKQFTKLSGG 131
Query: 219 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL-ANEGKAVLVVEHDLAVL 277
+ QRV +A AL DEP+ LD+ ++ L N K+++++ HD+ L
Sbjct: 132 QQQRVLLAMALSYNPELILLDEPTVGLDVHAINHFMSILLDLNMNHKKSIVMISHDIGTL 191
>pir||D69180 ABC transporter - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2621685|gb|AAB85111.1| (AE000842) ABC
transporter [Methanobacterium thermoautotrophicum]
Length = 250
Score = 87.8 bits (214), Expect = 3e-16
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 25/174 (14%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV--------EWDLTVAYKPQYIKAE 415
++ GE++ ++GPNG GKTT ++++ G +PT G V + + Y PQ E
Sbjct: 27 KVPMGELLAVIGPNGGGKTTLLRLITGQIKPTRGTVRVLGMKPEDSRSRIGYLPQRSHFE 86
Query: 416 YE-----------GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQ 464
+ GT + D + + LK +G+++ DR + +LSGGELQ
Sbjct: 87 TDFPINILQTVLIGTYRRFEAPTDDDRKKA----LRALKMVGMLEYRDRKIGELSGGELQ 142
Query: 465 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 518
RV +A L+R+ D+ LLDEP+A +D R + R I L ++E T ++V HD+
Sbjct: 143 RVFLARALVREPDLLLLDEPTASVDPAFRGSFYRIIDEL--RDEMTIVIVSHDI 194
>dbj|BAB07815.1| (AB036417) CysA protein [Acetabularia acetabulum]
Length = 357
Score = 87.8 bits (214), Expect = 3e-16
Identities = 58/182 (31%), Positives = 99/182 (53%), Gaps = 14/182 (7%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA----YKPQYIKAEYEG- 418
EI GE++ ++GP+G GKTT ++++AG+EE TEGK+ +D A + + I ++G
Sbjct: 33 EINSGEIVALLGPSGSGKTTLLRVMAGLEEITEGKIFYDGEDATDWSLEDRQIGFVFQGY 92
Query: 419 TVYELLSKIDSSKLNSNFYKT---------ELLKPLGIIDLYDRNVEDLSGGELQRVAIA 469
+++ L+ D+ K ELL + + L R + LSGG+ QR+A+A
Sbjct: 93 ALFKHLTVGDNIAFGPRMKKMDIDIRKRVKELLDLVQLPGLESRFPQQLSGGQRQRIALA 152
Query: 470 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 529
L + + LLDEP LD E R + +++ ++ T+++V HD V+DR++
Sbjct: 153 RALAYEPRLLLLDEPFGALDPEIREDLRNSLKRIISSLNLTSVMVTHDQEEAFEVADRVV 212
Query: 530 VF 531
VF
Sbjct: 213 VF 214
>pir||F81257 probable hemein uptake system ATP-binding protein Cj1616 [imported]
- Campylobacter jejuni (strain NCTC 11168)
>gi|6969033|emb|CAB73604.1| (AL139079) putative haemin
uptake system ATP-binding protein [Campylobacter jejuni]
Length = 258
Score = 87.8 bits (214), Expect = 3e-16
Identities = 63/207 (30%), Positives = 107/207 (51%), Gaps = 20/207 (9%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNY----FE 155
+K+ +GI+GPNG+GK+T +K++ L PN VI F N ++++ F
Sbjct: 24 LKNQAFIGILGPNGSGKSTLLKLILKNLSPN--------KGVISLFNTN-IKDFSLKEFA 74
Query: 156 RL-----KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDR 210
++ + E+ +K V L+ K K +++ + +E K+L LEN L+R
Sbjct: 75 KICGFVPQKSELNTPLKVIDVLLMSKYPNLKHAFSSYSKEDILEIKEFAKDLRLENFLER 134
Query: 211 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK-AVLV 269
+ LSGGE QR+ +A ALL+K F DEP+S LD+ +++ + +L E AV+
Sbjct: 135 SILSLSGGEFQRMLLARALLKKPKILFLDEPTSALDLNYAIELLNLCEKLVKEKNIAVVA 194
Query: 270 VEHDLAVLDYLSD-VIHVVYGEPGVYG 295
+ HDL + D ++ + GE +G
Sbjct: 195 ILHDLNLASIFCDKILFLKEGEIKYFG 221
Score = 69.9 bits (168), Expect = 8e-11
Identities = 52/194 (26%), Positives = 94/194 (47%), Gaps = 23/194 (11%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------------EWDLTVAYKPQ 410
E++ IGI+GPNG GK+T +K++ P +G + E+ + PQ
Sbjct: 23 ELKNQAFIGILGPNGSGKSTLLKLILKNLSPNKGVISLFNTNIKDFSLKEFAKICGFVPQ 82
Query: 411 YIKAEYEGTVYE--LLSKIDSSK-LNSNFYKTELL------KPLGIIDLYDRNVEDLSGG 461
+ V + L+SK + K S++ K ++L K L + + +R++ LSGG
Sbjct: 83 KSELNTPLKVIDVLLMSKYPNLKHAFSSYSKEDILEIKEFAKDLRLENFLERSILSLSGG 142
Query: 462 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 521
E QR+ +A LL+ I LDEP++ LD+ + + L+++ + + HD+ +
Sbjct: 143 EFQRMLLARALLKKPKILFLDEPTSALDLNYAIELLNLCEKLVKEKNIAVVAILHDLNLA 202
Query: 522 DYVSDRLIVF-EGE 534
D+++ EGE
Sbjct: 203 SIFCDKILFLKEGE 216
>pir||B36931 hypothetical protein (sfp0 5' region) - Bacillus subtilis
>gi|304168|gb|AAC36828.1| (L17438) homology to family of
bacterial receptor ATPases [Bacillus subtilis]
Length = 246
Score = 87.4 bits (213), Expect = 4e-16
Identities = 70/216 (32%), Positives = 114/216 (52%), Gaps = 16/216 (7%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFER 156
++ G V+ I+GP+G+GKTT ++ L IPN L D+ S D + R + +
Sbjct: 24 IEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAFDDFSIDFSKKVNR--RISKASPK 81
Query: 157 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFE-EVVKELELENVLDRELHQL 215
++NG + V + L ++G V+ + +EV K +++ ++ L++ +D QL
Sbjct: 82 IRNG-VSGVSPVPHRTALENVMEGPVQVQKRNKEEVRKEAIQLLDKVGLKDKMDLYPFQL 140
Query: 216 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA 275
SGG+ QRV IA AL + FDEP+S LD +V +VI+ LANEG ++VV H++
Sbjct: 141 SGGQQQRVGIARALAIQPELMLFDEPTSALDPELVGEVLKVIKDLANEGWTMVVVTHEIK 200
Query: 276 VLDYLSDVIHVVYGEPGVY-------GIFSKPKGTR 304
++D V++ + GV IFS PK R
Sbjct: 201 FAQEVAD--EVIFIDGGVIVEQGPPEQIFSAPKEER 234
>gb|AAD23570.1|AF121946_1 (AF121946) maltose transport protein MalK [Thermococcus litoralis]
Length = 372
Score = 87.4 bits (213), Expect = 4e-16
Identities = 55/190 (28%), Positives = 101/190 (52%), Gaps = 25/190 (13%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV----------EWDLTVAYKPQYIK 413
E++ GE + ++GP+G GKTT ++M+AG+EEP+ G++ E + V K + I
Sbjct: 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIA 84
Query: 414 AEYEG-------TVYE------LLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSG 460
++ TVY+ L K+ +++ E+ + LG+ +L +R +LSG
Sbjct: 85 MVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV--REVAELLGLTELLNRKPRELSG 142
Query: 461 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 520
G+ QRVA+ ++R ++L+DEP + LD + R+ + ++ L + T + V HD +
Sbjct: 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202
Query: 521 IDYVSDRLIV 530
+ DR+ V
Sbjct: 203 AMTMGDRIAV 212
>gb|AAD24578.1|AF126010_1 (AF126010) trehalose/maltose transport ATP-hydrolyzing subunit MalK
[Thermococcus litoralis]
Length = 372
Score = 87.4 bits (213), Expect = 4e-16
Identities = 55/190 (28%), Positives = 101/190 (52%), Gaps = 25/190 (13%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV----------EWDLTVAYKPQYIK 413
E++ GE + ++GP+G GKTT ++M+AG+EEP+ G++ E + V K + I
Sbjct: 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDRLVADPEKGIFVPPKDRDIA 84
Query: 414 AEYEG-------TVYE------LLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSG 460
++ TVY+ L K+ +++ E+ + LG+ +L +R +LSG
Sbjct: 85 MVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV--REVAELLGLTELLNRKPRELSG 142
Query: 461 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 520
G+ QRVA+ ++R ++L+DEP + LD + R+ + ++ L + T + V HD +
Sbjct: 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202
Query: 521 IDYVSDRLIV 530
+ DR+ V
Sbjct: 203 AMTMGDRIAV 212
>pir||H72272 sugar ABC transporter, ATP-binding protein - Thermotoga maritima
(strain MSB8) >gi|4981834|gb|AAD36351.1|AE001783_2
(AE001783) sugar ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 369
Score = 87.4 bits (213), Expect = 4e-16
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 19/181 (10%)
Query: 369 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAY----KPQYIKAEYEG------ 418
E + ++GP+G GKTT ++M+AG+EE T+GK+ D V K + I ++
Sbjct: 33 EFVVLLGPSGCGKTTTLRMIAGLEEITDGKIYIDGKVVNDVEPKDRDIAMVFQNYALYPH 92
Query: 419 -TVYE------LLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 471
TVYE L K +++ E K LGI +L DR LSGG+ QRVA+
Sbjct: 93 MTVYENMAFGLKLRKYPKDEIDRRV--REAAKILGIENLLDRKPRQLSGGQRQRVAVGRA 150
Query: 472 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 531
++R+ ++L DEP + LD + R+ + ++ L + + T + V HD + ++D+++V
Sbjct: 151 IVRNPKVFLFDEPLSNLDAKLRVQMRSELKKLHHRLQATIIYVTHDQVEAMTMADKIVVM 210
Query: 532 E 532
+
Sbjct: 211 K 211
Score = 76.5 bits (185), Expect = 8e-13
Identities = 68/231 (29%), Positives = 118/231 (50%), Gaps = 21/231 (9%)
Query: 99 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 158
+V+D V ++GP+G GKTT ++++AG L E D + + ++ N E K
Sbjct: 28 VVEDKEFVVLLGPSGCGKTTTLRMIAG-----LEEITDG-----KIYIDGKVVNDVEP-K 76
Query: 159 NGEIRPVVK-----PQYVDLLPKAVKGKVRELLKKVDEVGK-FEEVVKELELENVLDREL 212
+ +I V + P A K+R+ K DE+ + E K L +EN+LDR+
Sbjct: 77 DRDIAMVFQNYALYPHMTVYENMAFGLKLRKYPK--DEIDRRVREAAKILGIENLLDRKP 134
Query: 213 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV-VE 271
QLSGG+ QRVA+ A++R + FDEP S LD + R+++ +++L + +A ++ V
Sbjct: 135 RQLSGGQRQRVAVGRAIVRNPKVFLFDEPLSNLDAKLRVQMRSELKKLHHRLQATIIYVT 194
Query: 272 HDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRF 322
HD ++D I VV + + I + + + N F+ G++ + F
Sbjct: 195 HDQVEAMTMADKI-VVMKDGEIQQIGTPHEIYNSPANVFVAGFIGSPPMNF 244
>pir||F75377 ABC transporter, ATP-binding protein - Deinococcus radiodurans
(strain R1) >gi|6459346|gb|AAF11143.1|AE002002_1
(AE002002) ABC transporter, ATP-binding protein
[Deinococcus radiodurans]
Length = 346
Score = 87.4 bits (213), Expect = 4e-16
Identities = 68/220 (30%), Positives = 105/220 (46%), Gaps = 33/220 (15%)
Query: 333 SERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE 392
S R V R+T RLV S ++ PGE V+G +GPNG GKTT +KML+G+
Sbjct: 31 SLRAFVSRKT-----RLVDAVKSVSFDLAPGE-----VVGFLGPNGAGKTTTLKMLSGLL 80
Query: 393 EPTEGKVEWDLTVAYKPQYIKAEY-------EGTVYEL---LSKIDSSKLNSNFYKT--- 439
P+ G VE + ++P+ + EY G +L L +DS +N Y+
Sbjct: 81 HPSGGSVE---VLGFEPRRRQREYLRQMTLVMGQKQQLIWDLPALDSFLVNQAIYEIPDA 137
Query: 440 -------ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 492
E + LG+ + + V LS GE + +AA LL I LDEP+ LDV
Sbjct: 138 QYHATMREFTEVLGLEGILKKQVRKLSLGERMKCELAAALLHRPKILFLDEPTIGLDVNM 197
Query: 493 RLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 532
+ AV +R K + T ++ H + + ++ R++V +
Sbjct: 198 QEAVREFVREYNRKEQATVMLTSHYMADVTALARRILVID 237
>pir||C72267 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4981886|gb|AAD36399.1|AE001787_4 (AE001787)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 238
Score = 87.0 bits (212), Expect = 5e-16
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 25/200 (12%)
Query: 101 KDGMVVGIVGPNGTGKTTAVKILAGQLIP----------NLCEDNDSWDNVIRAFRGNEL 150
++G + + G NG+GKTT +K++A LIP N+ E + G E
Sbjct: 26 EEGSITAVFGENGSGKTTLLKVIASFLIPDRGKVLIDSVNIVEKPSFAVEKVSISTGYER 85
Query: 151 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDR 210
Y+ ++ DLL K +K + E V+KEL L +
Sbjct: 86 SFYYRLSVEENLK--FFGMLNDLLGKTLKRET-------------ERVMKELGLLECRKK 130
Query: 211 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 270
+LS G +RV +A AL++KA Y FDEP S +D+R RLK+ +++RL G+ V+
Sbjct: 131 RYMELSTGYKKRVDVARALMKKASIYIFDEPCSGVDLRTRLKIHEIMKRLKESGRIVIFA 190
Query: 271 EHDLAVLDYLSDVIHVVYGE 290
HDL L VI + GE
Sbjct: 191 SHDLEDLKIADRVIVLKKGE 210
Score = 79.6 bits (193), Expect = 9e-14
Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 19/186 (10%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQY------IKAEY 416
E +G + + G NG GKTT +K++A P GKV D + + KP + I Y
Sbjct: 24 EAEEGSITAVFGENGSGKTTLLKVIASFLIPDRGKVLIDSVNIVEKPSFAVEKVSISTGY 83
Query: 417 EGTVYELLSKIDSSK----LNSNFYKT------ELLKPLGIIDLYDRNVEDLSGGELQRV 466
E + Y LS ++ K LN KT ++K LG+++ + +LS G +RV
Sbjct: 84 ERSFYYRLSVEENLKFFGMLNDLLGKTLKRETERVMKELGLLECRKKRYMELSTGYKKRV 143
Query: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 526
+A L++ A IY+ DEP + +D+ RL + ++ L E + + HD+ + ++D
Sbjct: 144 DVARALMKKASIYIFDEPCSGVDLRTRLKIHEIMKRLKESG-RIVIFASHDLEDLK-IAD 201
Query: 527 RLIVFE 532
R+IV +
Sbjct: 202 RVIVLK 207
>sp|Q57554|Y089_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN MJ0089
>gi|2127897|pir||A64311 ferric enterobactin transport
ATP-binding protein homolog - Methanococcus jannaschii
>gi|1498853|gb|AAB98070.1| (U67466) ferric enterobactin
transport ATP-binding protein [Methanococcus jannaschii]
Length = 254
Score = 87.0 bits (212), Expect = 5e-16
Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 18/187 (9%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---------LTVAYKPQYIKA 414
E+++GEV+ I+G NG GK+T +K + + +P G + D L +A K Y+
Sbjct: 27 EVKRGEVVSILGVNGAGKSTLLKCINKILKPKRGTILIDNFDIKNLDNLELAKKVGYVPQ 86
Query: 415 EYEG---TVYE--LLSKIDSSKLNSNFYKTEL----LKPLGIIDLYDRNVEDLSGGELQR 465
EG TV++ LL + K + E+ LK L + D R +LSGGELQ+
Sbjct: 87 RAEGNYMTVFDAVLLGRKPHIKWEVSDRDIEITHKVLKLLNLEDYALRYTNELSGGELQK 146
Query: 466 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 525
V IA L+++ I LLDEP+ LD++ +L V + I + + ++VV HD+ + S
Sbjct: 147 VIIARALVQEPQILLLDEPTNNLDLKNQLEVMKIIMDISKSQNIASIVVMHDLNLALRYS 206
Query: 526 DRLIVFE 532
D+ I+ +
Sbjct: 207 DKFIMLK 213
Score = 76.5 bits (185), Expect = 8e-13
Identities = 62/201 (30%), Positives = 101/201 (49%), Gaps = 14/201 (6%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
VK G VV I+G NG GK+T +K + L P +I F L N K
Sbjct: 28 VKRGEVVSILGVNGAGKSTLLKCINKILKPK------RGTILIDNFDIKNLDNLELAKKV 81
Query: 160 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE--VGKFEEVVKELELENVLDRELHQLSG 217
G + + Y+ + + G+ + +V + + +V+K L LE+ R ++LSG
Sbjct: 82 GYVPQRAEGNYMTVFDAVLLGRKPHIKWEVSDRDIEITHKVLKLLNLEDYALRYTNELSG 141
Query: 218 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA-NEGKAVLVVEHDLAV 276
GELQ+V IA AL+++ DEP++ LD++ +L+V ++I ++ ++ A +VV HDL +
Sbjct: 142 GELQKVIIARALVQEPQILLLDEPTNNLDLKNQLEVMKIIMDISKSQNIASIVVMHDLNL 201
Query: 277 LDYLSDVI-----HVVYGEPG 292
SD V+Y E G
Sbjct: 202 ALRYSDKFIMLKDGVIYAEGG 222
>pir||H83609 sulfate transport protein CysA PA0280 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946123|gb|AAG03669.1|AE004466_3 (AE004466) sulfate
transport protein CysA [Pseudomonas aeruginosa]
Length = 329
Score = 87.0 bits (212), Expect = 5e-16
Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 27/220 (12%)
Query: 344 VEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW- 401
+E + K++ +FK L+ +I+ GE++ ++GP+G GKTT ++++AG+E P G + +
Sbjct: 3 IEIRNVSKNFNAFKALDDINLDIQSGELVALLGPSGCGKTTLLRIIAGLETPDAGNIVFH 62
Query: 402 ----------DLTVAYKPQYIKAEYEGTVYE-----LLSKIDSSKLNSNFYKTELLKPLG 446
D V + Q+ TV++ L K + + K ++ + L
Sbjct: 63 GEDVSQHDVRDRNVGFVFQHYALFRHMTVFDNVAFGLRMKPKGERPGESAIKAKVHELLN 122
Query: 447 IIDL---YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 503
++ L DR E LSGG+ QR+A+A L + I LLDEP LD + R + R + L
Sbjct: 123 MVQLDWLADRYPEQLSGGQRQRIALARALAVEPKILLLDEPFGALDAKVRKELRRWLARL 182
Query: 504 MEKNEKTALVVEHDVLMIDYVSDRLIVFE-------GEPG 536
E+ T++ V HD V+DR++V G PG
Sbjct: 183 HEEINLTSVFVTHDQEEAMEVADRIVVMNKGVIEQIGSPG 222
Score = 76.9 bits (186), Expect = 6e-13
Identities = 74/252 (29%), Positives = 114/252 (44%), Gaps = 34/252 (13%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLC------EDNDSWD----NVIRAFRGNE 149
++ G +V ++GP+G GKTT ++I+AG P+ ED D NV F+
Sbjct: 25 IQSGELVALLGPSGCGKTTLLRIIAGLETPDAGNIVFHGEDVSQHDVRDRNVGFVFQHYA 84
Query: 150 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD 209
L + N +KP+ A+K KV ELL V +L+ + D
Sbjct: 85 LFRHMTVFDNVAFGLRMKPKGERPGESAIKAKVHELLNMV-------------QLDWLAD 131
Query: 210 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 269
R QLSGG+ QR+A+A AL + DEP LD + R ++ R + RL E V
Sbjct: 132 RYPEQLSGGQRQRIALARALAVEPKILLLDEPFGALDAKVRKELRRWLARLHEEINLTSV 191
Query: 270 -VEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDEN--------- 319
V HD ++D I VV + + I S + N ++F+ +L D N
Sbjct: 192 FVTHDQEEAMEVADRI-VVMNKGVIEQIGSPGEVYENPASDFVYHFLGDSNRLQLGNDQH 250
Query: 320 VRFRPYEIRFTK 331
+ FRP+E+ ++
Sbjct: 251 LLFRPHEVSLSR 262
>pir||T45470 ATP-binding ABC transport protein [imported] - Erysipelothrix
rhusiopathiae >gi|1335913|gb|AAB01157.1| (U52850)
unknown [Erysipelothrix rhusiopathiae]
Length = 246
Score = 86.6 bits (211), Expect = 7e-16
Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 19/183 (10%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--------LTVAYKPQY--IK 413
+ KG++ IVGPNG GK+T +K + G+ +P GK+ + +AY PQ +
Sbjct: 29 KFEKGKLTAIVGPNGAGKSTMIKAIMGLLKPISGKITINGQHQKDEYKNIAYVPQSGSVD 88
Query: 414 AEYEGTVYEL--------LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQR 465
++ TV ++ + I + E+L+ +G+ DR + LSGG+ QR
Sbjct: 89 WDFPATVEDIVLMGRYGHIGWIKRPRKEDREIANEMLERVGMSAYRDRQISQLSGGQQQR 148
Query: 466 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 525
V +A L + A+IY+LDEP +DV+ + ++ L KT +VV HD+ I+
Sbjct: 149 VFLARALTQQAEIYILDEPLKGVDVKTEEILMTLLKELAASG-KTVIVVHHDLTSIEGYF 207
Query: 526 DRL 528
D +
Sbjct: 208 DNI 210
Score = 79.6 bits (193), Expect = 9e-14
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIP-------NLCEDNDSWDNVIRAFRGNELQNYFE 155
G + IVGPNG GK+T +K + G L P N D + N+ + + F
Sbjct: 33 GKLTAIVGPNGAGKSTMIKAIMGLLKPISGKITINGQHQKDEYKNIAYVPQSGSVDWDF- 91
Query: 156 RLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQL 215
P V + G ++ K+ E+ E+++ + + DR++ QL
Sbjct: 92 --------PATVEDIVLMGRYGHIGWIKRPRKEDREIAN--EMLERVGMSAYRDRQISQL 141
Query: 216 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA 275
SGG+ QRV +A AL ++A Y DEP +D++ + +++ LA GK V+VV HDL
Sbjct: 142 SGGQQQRVFLARALTQQAEIYILDEPLKGVDVKTEEILMTLLKELAASGKTVIVVHHDLT 201
Query: 276 VLDYLSDVIHVV 287
++ D I +V
Sbjct: 202 SIEGYFDNIALV 213
>pir||H71886 probable ABC transporter, ATP-binding protein - Helicobacter pylori
(strain J99) >gi|4155369|gb|AAD06381.1| (AE001509)
putative abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 533
Score = 86.6 bits (211), Expect = 7e-16
Identities = 118/494 (23%), Positives = 210/494 (41%), Gaps = 76/494 (15%)
Query: 107 GIVGPNGTGKTTAVKILA--------------GQLIPNLCEDNDSWDNVI---RAFRGNE 149
G++G NG GK+T +KIL+ G + L +D +++++ GN
Sbjct: 31 GLIGANGAGKSTFLKILSKSIDCSSGEVIITSGMRMGVLGQDQYAFEDLSLKDAVLIGN- 89
Query: 150 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD 209
+ ++ +K E R + D A G++ + + D + + E V++++ + +
Sbjct: 90 -RRLYDAIKEKE-RLYTEGDLSDDKVNARLGELETICVEEDPMYECEVVIEKILEDLGIP 147
Query: 210 RELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEG 264
H L + ++ +A L K DEP++ LD+ + ++R +EG
Sbjct: 148 SSKHNDLMKTLPSSDKFKILLAQVLFPKPDILLLDEPTNNLDLNAIEWLENNLKR--HEG 205
Query: 265 KAVLVVEHDL----AVLDYLSDV-IHVVYGEPGVYG--------IFSKPKGTRNG----- 306
V V+ HD AV ++ D+ H V G Y I + + RN
Sbjct: 206 TMV-VISHDRHFLNAVCTHILDLDFHSVREFSGNYDDWYIASTLIAKQQEAERNKKLKEK 264
Query: 307 ------INEFLQGYLKDENVRFRP-----YEIRFTKLSERVDVE-----RETL----VEY 346
I F K + R +I+ +S R D + T+ +E
Sbjct: 265 EELEKFIARFSANASKAKQATSRQKQLDKLDIQSLAISSRRDPSIIFKPKRTIGNEALEC 324
Query: 347 PRLVKDYGS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTV 405
+ K Y L ++ + I ++GPNG+GK+T K+L +P G V+W TV
Sbjct: 325 ENISKSYDDQIVLNQVSLKVMPKDKIALIGPNGVGKSTLCKILVEELKPDTGVVKWGATV 384
Query: 406 --AYKPQYIKAEYEG--TVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGG 461
Y PQ + E G T+Y+ L + K+ S + L + L + ++ V LSGG
Sbjct: 385 LKGYFPQNVSEEISGEETLYQWLFNF-NKKIESAEVRNALGRMLFNGEEQEKCVNALSGG 443
Query: 462 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 521
E R+ ++ +L + +LDEP+ +LD+E +A+ A + K + + V HD +I
Sbjct: 444 EKHRMVLSKLMLEGGNFLVLDEPTNHLDLEAIIALGEA----LFKFDGALICVSHDRELI 499
Query: 522 DYVSDRLIVFEGEP 535
D ++R+I P
Sbjct: 500 DAYANRIIELVPSP 513
>emb|CAA67569.1| (X99127) ATP binding protein [Staphylococcus epidermidis]
Length = 248
Score = 86.6 bits (211), Expect = 7e-16
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 30/186 (16%)
Query: 368 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTV-------AYKPQYIKAEYEGTV 420
GE+IGIVGPNG GK++ +K G + T +D + Y PQ + + +
Sbjct: 28 GEIIGIVGPNGAGKSSLLKAFIGEFKATGKHTLYDHPIHTQLRYITYIPQKAHIDLDFPI 87
Query: 421 ----------------YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQ 464
++ S ++ +KLN +LL L + + R + +LSGG+LQ
Sbjct: 88 KVDQVILSGCYEDIGWFKKASVVEKTKLN------QLLNDLELDHIRHRQIAELSGGQLQ 141
Query: 465 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 524
RV +A L+ ++DIY LDEP +D+ + + I+HL K L+V HD+ D
Sbjct: 142 RVLVARALMSNSDIYCLDEPFVGIDIYSEQLIMKKIKHLRHMG-KLILIVHHDLSKADQY 200
Query: 525 SDRLIV 530
DR+++
Sbjct: 201 FDRILL 206
Score = 83.9 bits (204), Expect = 5e-15
Identities = 61/198 (30%), Positives = 104/198 (51%), Gaps = 19/198 (9%)
Query: 93 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ- 151
+ + LPI +G ++GIVGPNG GK++ +K G+ + +D+ I +L+
Sbjct: 20 ITFSLPI--NGEIIGIVGPNGAGKSSLLKAFIGEF--KATGKHTLYDHPIHT----QLRY 71
Query: 152 -NYFERLKNGEIRPVVKPQYVDLLPKAVKGKVREL--LKK--VDEVGKFEEVVKELELEN 206
Y + + ++ +K V L G ++ KK V E K +++ +LEL++
Sbjct: 72 ITYIPQKAHIDLDFPIKVDQVIL-----SGCYEDIGWFKKASVVEKTKLNQLLNDLELDH 126
Query: 207 VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKA 266
+ R++ +LSGG+LQRV +A AL+ + Y DEP +DI + + I+ L + GK
Sbjct: 127 IRHRQIAELSGGQLQRVLVARALMSNSDIYCLDEPFVGIDIYSEQLIMKKIKHLRHMGKL 186
Query: 267 VLVVEHDLAVLDYLSDVI 284
+L+V HDL+ D D I
Sbjct: 187 ILIVHHDLSKADQYFDRI 204
>pir||B72369 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4980994|gb|AAD35568.1|AE001726_2 (AE001726)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 235
Score = 86.6 bits (211), Expect = 7e-16
Identities = 56/202 (27%), Positives = 104/202 (50%), Gaps = 12/202 (5%)
Query: 343 LVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE- 400
+++ +L YG K +E E+++GE++ +VGP+G GKTT VK + G+ P EGK+E
Sbjct: 1 MIKVSQLTVRYGELKAVEDLSLEVQRGEILSLVGPSGCGKTTVVKAILGLI-PYEGKIEI 59
Query: 401 WDLTVAYKPQYI-----KAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNV 455
+ + Y PQ YE V L+ + + N EL + G+ ++
Sbjct: 60 FTSRLGYCPQKDVLFDWMTVYENAVLPLVLRKEQPPSNIK----ELFERFGLSGFEEKRP 115
Query: 456 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 515
LSGG Q++++ +L ++ +LDEP + +D R + + ++ + + T +++
Sbjct: 116 YQLSGGMRQKLSLLRAVLSGEELLVLDEPFSSVDAYTRKKLQIWLSEIVHRMKSTVVLIT 175
Query: 516 HDVLMIDYVSDRLIVFEGEPGR 537
HDV ++SDR+++ P R
Sbjct: 176 HDVEEAVFLSDRILILSDRPAR 197
>emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding protein appF related
protein [Thermoplasma acidophilum]
Length = 314
Score = 86.6 bits (211), Expect = 7e-16
Identities = 53/184 (28%), Positives = 99/184 (53%), Gaps = 21/184 (11%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELL 424
I G VIG+VG +G GK+T K++ +E PT+G++ + T K +Y K + +++
Sbjct: 43 IMDGNVIGVVGESGSGKSTMGKVMVTLETPTDGELYFKGTRVTKSEYPKIRKQ---VDMV 99
Query: 425 SKIDSSKLNSNFYKTELL-KPLGIID-----------------LYDRNVEDLSGGELQRV 466
+ ++ LN +++ +PLG D + D+ +LSGG++QRV
Sbjct: 100 FQNPATSLNPKMKVKDIVSEPLGHFDEGAIKEVILKVGLSYDEVKDKQSRELSGGQVQRV 159
Query: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 526
AIA L++ ++ +LDEP++ LD + V + L + + T + + H++L+ Y+SD
Sbjct: 160 AIARALMKKPELLVLDEPTSALDESIQAQVLNLLVDLQTEYKMTYIFITHNILVAKYISD 219
Query: 527 RLIV 530
++V
Sbjct: 220 YIVV 223
Score = 85.8 bits (209), Expect = 1e-15
Identities = 69/211 (32%), Positives = 115/211 (53%), Gaps = 21/211 (9%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL-QNYFERLK 158
+ DG V+G+VG +G+GK+T K++ P D + + F+G + ++ + +++
Sbjct: 43 IMDGNVIGVVGESGSGKSTMGKVMVTLETPT---DGELY------FKGTRVTKSEYPKIR 93
Query: 159 NGEIRPVVKPQYVDLLPKA-VKGKVRELLKKVDEVGKFEEVVKELEL--ENVLDRELHQL 215
++ V + L PK VK V E L DE G +EV+ ++ L + V D++ +L
Sbjct: 94 K-QVDMVFQNPATSLNPKMKVKDIVSEPLGHFDE-GAIKEVILKVGLSYDEVKDKQSREL 151
Query: 216 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV-VEHDL 274
SGG++QRVAIA AL++K DEP+S LD + +V ++ L E K + + H++
Sbjct: 152 SGGQVQRVAIARALMKKPELLVLDEPTSALDESIQAQVLNLLVDLQTEYKMTYIFITHNI 211
Query: 275 AVLDYLSDVIHVVY-GEPGVYG----IFSKP 300
V Y+SD I V+Y G+ YG + SKP
Sbjct: 212 LVAKYISDYIVVLYAGKIVEYGPTSEVLSKP 242
>pir||E64626 ABC transporter, ATP-binding protein - Helicobacter pylori (strain
26695) >gi|2313986|gb|AAD07900.1| (AE000596) ABC
transporter, ATP-binding protein (yheS) [Helicobacter
pylori 26695]
Length = 533
Score = 86.6 bits (211), Expect = 7e-16
Identities = 118/494 (23%), Positives = 215/494 (42%), Gaps = 76/494 (15%)
Query: 107 GIVGPNGTGKTTAVKILA--------------GQLIPNLCEDNDSWDNVI---RAFRGNE 149
G++G NG GK+T +KIL+ G + L +D +++++ GN+
Sbjct: 31 GLIGANGAGKSTFLKILSKSIDCSSGEVIITSGMKMGVLGQDQYAFEDLSLKDAVLIGNK 90
Query: 150 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK----FEEVVKELELE 205
++ +K E R + D A G++ + + D + + E+++++L +
Sbjct: 91 --RLYDAIKEKE-RLYTEGDLSDDKVNARLGELETICVEEDPMYECEVAIEKILEDLGIP 147
Query: 206 NVLDRELHQ-LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEG 264
+ +L + L + ++ +A L K DEP++ LD+ + ++R +EG
Sbjct: 148 SSKHNDLMKTLPSSDKFKILLAQVLFPKPDILLLDEPTNNLDLNAIEWLENNLKR--HEG 205
Query: 265 KAVLVVEHDL----AVLDYLSDV-IHVVYGEPGVYG--------IFSKPKGTRNG----- 306
V V+ HD AV ++ D+ H V G Y I + + RN
Sbjct: 206 TMV-VISHDRHFLNAVCTHILDLDFHSVREFSGNYDDWYIASTLIAKQQEAERNKKLKEK 264
Query: 307 ------INEFLQGYLKDENVRFRP-----YEIRFTKLSERVDVE-----RETL----VEY 346
I F K + R +I+ +S R D + T+ +E
Sbjct: 265 EELEKFIARFSANASKAKQATSRQKQLDKLDIQSLAVSSRRDPSIIFKPKRTIGNEALEC 324
Query: 347 PRLVKDYGS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTV 405
+ K Y L ++ + I ++GPNG+GK+T K+L +P +G V+W TV
Sbjct: 325 ENISKSYDDQIVLNQVSLKVMPKDKIALIGPNGVGKSTLCKILVEELKPDKGVVKWGATV 384
Query: 406 A--YKPQYIKAEYEG--TVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGG 461
+ Y PQ + E G T+Y+ L + K+ S + L + L + ++ V LSGG
Sbjct: 385 SKGYFPQNVSEEISGEETLYQWLFNF-NKKIESAEVRNALGRMLFNGEEQEKCVNALSGG 443
Query: 462 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 521
E R+ ++ +L + +LDEP+ +LD+E +A+ A + K + + V HD +I
Sbjct: 444 EKHRMVLSKLMLEGGNFLVLDEPTNHLDLEAIIALGEA----LFKFDGALICVSHDRELI 499
Query: 522 DYVSDRLIVFEGEP 535
D ++R+I P
Sbjct: 500 DAYANRIIELVPSP 513
>gi|11499064 ABC transporter, ATP-binding protein [Archaeoglobus fulgidus]
>gi|7445944|pir||D69433 ABC transporter, ATP-binding
protein homolog - Archaeoglobus fulgidus
>gi|2649101|gb|AAB89781.1| (AE001001) ABC transporter,
ATP-binding protein [Archaeoglobus fulgidus]
Length = 226
Score = 86.6 bits (211), Expect = 7e-16
Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 28/220 (12%)
Query: 331 KLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG 390
K+ E VDV + Y Y L+ E+ GE + I+GP+G GK+T + M+
Sbjct: 2 KVIELVDVYKIYRTAY------YEVHALDGVSMEVEAGEFVAIMGPSGSGKSTLLNMIGC 55
Query: 391 VEEPTEGKV-----------EWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKT 439
+++PT+G+V + +LT + + + L+ +++ +L F
Sbjct: 56 LDKPTKGEVIINGVKTSGLSDRELTKLRRDSIGFIFQQYNLIPTLTALENVELPMIFRGV 115
Query: 440 ----------ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD 489
ELLK +GI +L DR ++SGG+ QRVAIA L + I L DEP+ LD
Sbjct: 116 ARAERERRAKELLKVVGIEELADRRPREMSGGQQQRVAIARALANNPKILLCDEPTGNLD 175
Query: 490 VEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 529
+ V +++L E+N T ++V HD + +Y +DR+I
Sbjct: 176 TKSGRQVMGILKNLNEENGVTVVLVTHDPSLSEY-ADRVI 214
Score = 73.4 bits (177), Expect = 7e-12
Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 16/199 (8%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILA-------GQLIPNLCEDNDSWDNVIRAFRGNELQN 152
V+ G V I+GP+G+GK+T + ++ G++I N + + D + R + +
Sbjct: 30 VEAGEFVAIMGPSGSGKSTLLNMIGCLDKPTKGEVIINGVKTSGLSDRELTKLRRDSIGF 89
Query: 153 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDREL 212
F++ + P + LP +G R + + +E++K + +E + DR
Sbjct: 90 IFQQYN---LIPTLTALENVELPMIFRGVAR-----AERERRAKELLKVVGIEELADRRP 141
Query: 213 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVE 271
++SGG+ QRVAIA AL DEP+ LD + +V +++ L E G V++V
Sbjct: 142 REMSGGQQQRVAIARALANNPKILLCDEPTGNLDTKSGRQVMGILKNLNEENGVTVVLVT 201
Query: 272 HDLAVLDYLSDVIHVVYGE 290
HD ++ +Y VI + G+
Sbjct: 202 HDPSLSEYADRVIRIRDGK 220
>gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dppD-3) [Sulfolobus
solfataricus]
Length = 324
Score = 86.2 bits (210), Expect = 9e-16
Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 20/206 (9%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW----------DNVIRAFRGNE 149
V+ G +VG+VG +G+GK+T ++ L PN D D+ ++ +RG
Sbjct: 33 VEKGEIVGVVGESGSGKSTLGHAISRILPPNARIQGDIIVDGVNLAKLKDSELQKYRGTW 92
Query: 150 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFE---EVVKELELEN 206
+ F+ N + PV K L +AVK + + KK +E EV+K+L L +
Sbjct: 93 VFMIFQNPLNS-LNPVKKVG--SQLLEAVKIRYQREGKKAEEESLMRDVIEVLKDLRLPD 149
Query: 207 ---VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE 263
++DR HQLSGG++QR+ I+ ALL K DEP+S LD+ + +V + ++L E
Sbjct: 150 PYSIIDRYPHQLSGGQVQRIVISMALLLKPKLLIADEPTSALDVTIQAQVVNLFKQLNKE 209
Query: 264 -GKAVLVVEHDLAVLDYLSDVIHVVY 288
++L + HD+++ +SD I V+Y
Sbjct: 210 INTSILFITHDISLAYVVSDRIVVMY 235
>emb|CAA67415.1| (X98917) orf4 [Methanopyrus kandleri]
Length = 228
Score = 86.2 bits (210), Expect = 9e-16
Identities = 61/187 (32%), Positives = 94/187 (49%), Gaps = 16/187 (8%)
Query: 358 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV---EWDLT--------VA 406
LEVEPGE+R + GPNG GK+T +K++AG+ P EG+V E D+T V
Sbjct: 22 LEVEPGEVRV-----LFGPNGSGKSTLLKIVAGILRPDEGRVIIGEEDVTDLPPEERHVG 76
Query: 407 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV 466
Y PQ TV + ++ + EL++ LG+ + DR ++LSGG RV
Sbjct: 77 YVPQQPALFPHMTVEDNITYSLQNGRGDPDRLDELVELLGLKEHLDRKPDELSGGYQSRV 136
Query: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 526
++A L D + LLDEP + +D+ + + R ++++ AL V HD + + D
Sbjct: 137 SLARALFSDPKVMLLDEPLSDVDLAVKAGLVPRFREVLKETGIPALYVTHDPWEAERIGD 196
Query: 527 RLIVFEG 533
V G
Sbjct: 197 SFTVLIG 203
>gi|11499407 ABC transporter, ATP-binding protein [Archaeoglobus fulgidus]
>gi|7445943|pir||B69477 ABC transporter, ATP-binding
protein homolog - Archaeoglobus fulgidus
>gi|2648727|gb|AAB89431.1| (AE000977) ABC transporter,
ATP-binding protein [Archaeoglobus fulgidus]
Length = 231
Score = 86.2 bits (210), Expect = 9e-16
Identities = 61/198 (30%), Positives = 101/198 (50%), Gaps = 18/198 (9%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--VAYKPQYI---KAEYEG 418
EI +GE + ++GP+G GKTT + ++ G++ PT G+V +D Y + + G
Sbjct: 27 EIERGEFMVVLGPSGCGKTTMLNIIGGIDRPTRGRVIFDGKDITNYNEDRLTMHRRNNVG 86
Query: 419 TVYELLSKIDSSKLNSNFYKT-----------ELLKPLGIIDLYDRNVEDLSGGELQRVA 467
+++ + I + N E+LK +G+ D + +LSGGE QRVA
Sbjct: 87 FIFQFFNLIPTLTARENVEIAADLVESPRDVDEVLKMVGLADRAEHFPAELSGGEQQRVA 146
Query: 468 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 527
IA L+++ I L DEP+ LD E AV + +R + K T ++V H+ I ++DR
Sbjct: 147 IARALVKNPPIILADEPTGSLDFETGKAVLKVMREINRKEGITFVLVTHN-SAIAAIADR 205
Query: 528 LIVF-EGEPGRHGRALPP 544
++ +G+ R R L P
Sbjct: 206 VVYLRDGKVERVERNLHP 223
>pir||G75169 abc transporter ATP-binding protein PAB0350 - Pyrococcus abyssi
(strain Orsay) >gi|5457948|emb|CAB49438.1| (AJ248284)
ABC TRANSPORTER ATP-BINDING PROTEIN [Pyrococcus abyssi]
Length = 260
Score = 86.2 bits (210), Expect = 9e-16
Identities = 61/216 (28%), Positives = 107/216 (49%), Gaps = 28/216 (12%)
Query: 341 ETLVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
E ++E L Y S K +E +++KGE + ++GPNG GKTT +++LAG+ +GK+
Sbjct: 2 EYVIEAENLTIMYDSVKAVEGLTFKLKKGETLLLLGPNGAGKTTLLRVLAGLHTNYQGKI 61
Query: 400 --------EWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYK------------- 438
E VAY PQ + LS +D + + K
Sbjct: 62 LVFGKSPSEVREKVAYVPQTFSLNFRVP----LSVLDVVSMGGLYKKGLIHFNIPQEVIK 117
Query: 439 --TELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 496
E+L LG+ ++ ++ +LSGG+ QRV IA L+ + ++ LLDEP + LD + R+
Sbjct: 118 RGLEILDFLGLKEIAKKSFRELSGGQKQRVIIARALMSNPELLLLDEPLSALDPKARIEA 177
Query: 497 SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 532
+ + + E T ++ HDV + + D++++ +
Sbjct: 178 TSTLSKIKEDMGITMIITTHDVNPLIEIGDKVMLID 213
>pir||A71243 probable maltose/maltodextrin transport ATP-binding protein -
Pyrococcus horikoshii >gi|3256589|dbj|BAA29272.1|
(AP000001) 362aa long hypothetical maltose/maltodextrin
transport ATP-binding protein [Pyrococcus horikoshii]
Length = 362
Score = 85.8 bits (209), Expect = 1e-15
Identities = 90/306 (29%), Positives = 144/306 (46%), Gaps = 25/306 (8%)
Query: 81 EDCVHRYGVNAFVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 139
E+ V ++G N L + + +KDG + ++GP+G+GK+T + +AG P +D
Sbjct: 7 ENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT--SGKIYFD 63
Query: 140 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVV 199
+ +N +N + P + P ++ RE + K K EV
Sbjct: 64 EKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDK-----KVREVA 118
Query: 200 KELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 259
K L ++ +L+R QLSGG+ QRVAIA AL+++ DEP S LD RL+V ++R
Sbjct: 119 KMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR 178
Query: 260 LANE-GKAVLVVEHDLAVLDYLSDVIHVV-YGEPGVYG----IFSKPKGTRNGINEFLQG 313
L E G + V HD A ++D I V+ GE G ++ KPK +F+ G
Sbjct: 179 LQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK------YKFVGG 232
Query: 314 YLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEV----EPGEIRKGE 369
+L + + F ++ KL + +Y +VK+ G ++ + EI KGE
Sbjct: 233 FLGNPPMNFVEAKVEDGKLVITEKSKLPIPKQYVEIVKETGITEVIIGFRPHDAEIVKGE 292
Query: 370 VIGIVG 375
GIVG
Sbjct: 293 GEGIVG 298
Score = 83.9 bits (204), Expect = 5e-15
Identities = 63/210 (30%), Positives = 111/210 (52%), Gaps = 21/210 (10%)
Query: 344 VEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD 402
++ +VK +G+F L +I+ GE + ++GP+G GK+T + +AG+ +PT GK+ +D
Sbjct: 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFD 63
Query: 403 ----LTVAYKPQYIKAEYEG-------TVYELLS------KIDSSKLNSNFYKTELLKPL 445
+ K + + ++ TVY+ ++ K +++ E+ K L
Sbjct: 64 EKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKV--REVAKML 121
Query: 446 GIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 505
I L +R LSGG+ QRVAIA L+++ ++ LLDEP + LD RL V ++ L +
Sbjct: 122 HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181
Query: 506 KNEKTALVVEHDVLMIDYVSDRL-IVFEGE 534
+ T + V HD ++DR+ ++ EGE
Sbjct: 182 ELGITTVYVTHDQAEALAMADRIAVIREGE 211
>pir||G75203 abc transporter, ATP-binding protein PAB0103 - Pyrococcus abyssi
(strain Orsay) >gi|5457587|emb|CAB49078.1| (AJ248283)
ABC transporter, ATP-binding protein [Pyrococcus abyssi]
Length = 344
Score = 85.8 bits (209), Expect = 1e-15
Identities = 67/196 (34%), Positives = 102/196 (51%), Gaps = 21/196 (10%)
Query: 351 KDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLTVAY 407
KDY FKL +++K E I+GP+G GKT ++++AG+ EP EG++ D+T +Y
Sbjct: 9 KDYKEFKLRDISFDVKKEEHFIILGPSGAGKTVLLEIIAGIIEPDEGRIILNGVDVT-SY 67
Query: 408 KPQ-----YIKAEY----EGTVYE------LLSKIDSSKLNSNFYKTELLKPLGIIDLYD 452
P+ YI +Y TVY+ L +I +++ E+ K LGI L
Sbjct: 68 PPEKRNLAYIPQDYALFPHMTVYDNIAFGLKLRRISRQEIDRKV--KEISKVLGIEHLLH 125
Query: 453 RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 512
R LSGGE QRVAIA L+ + ++ LLDEP A LDV+ + ++ ++ T+L
Sbjct: 126 RKPRTLSGGEKQRVAIARALVIEPELLLLDEPFANLDVQTKSRFMTEMKVWRKELGFTSL 185
Query: 513 VVEHDVLMIDYVSDRL 528
V H + DR+
Sbjct: 186 HVTHSFEEAISLGDRV 201
>pir||F75035 iron (iii) abc transporter, ATP-binding protein (hemv-2) PAB1536 -
Pyrococcus abyssi (strain Orsay)
>gi|5458692|emb|CAB50179.1| (AJ248287) iron (III) ABC
transporter, ATP-binding protein (hemV-2) [Pyrococcus
abyssi]
Length = 238
Score = 85.8 bits (209), Expect = 1e-15
Identities = 60/201 (29%), Positives = 100/201 (48%), Gaps = 20/201 (9%)
Query: 346 YPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-- 402
Y + YG F+ L+ RKGE++ I+GPNG GK+T +K +AG+ +P G++ +D
Sbjct: 5 YVNVSFSYGDFEVLKNAEFSARKGELVSIIGPNGSGKSTLLKCIAGILKP-RGRISYDDV 63
Query: 403 -----------LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY 451
V+Y PQ E+ TV E ++ + E L+ +G+
Sbjct: 64 DLVNLRPKERAKIVSYVPQSSFPEFSFTVEEF---VELGTYATGGDVEEALRMVGLERKR 120
Query: 452 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 511
+ LSGGE Q IA L + +D+ LLDEP+++LD+ + + L K+EK
Sbjct: 121 KELITRLSGGEYQLALIARALAQGSDVMLLDEPTSHLDINHTKEIMDLLTRL--KDEKLI 178
Query: 512 LVVEHDVLMIDYVSDRLIVFE 532
+ V HD+ + SD +++ +
Sbjct: 179 IAVLHDLNLALNYSDYIVIIK 199
Score = 76.5 bits (185), Expect = 8e-13
Identities = 60/188 (31%), Positives = 95/188 (49%), Gaps = 16/188 (8%)
Query: 101 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNV-IRAFRGNELQNYFERLKN 159
+ G +V I+GPNG+GK+T +K +AG L P D D V +R ++ +Y +
Sbjct: 26 RKGELVSIIGPNGSGKSTLLKCIAGILKPRGRISYDDVDLVNLRPKERAKIVSYVPQSSF 85
Query: 160 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGE 219
E V+ ++V+L A G V E L+ V K +E++ +LSGGE
Sbjct: 86 PEFSFTVE-EFVELGTYATGGDVEEALRMVGLERKRKELIT-------------RLSGGE 131
Query: 220 LQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDY 279
Q IA AL + + DEP+S+LDI ++ ++ RL +E K ++ V HDL +
Sbjct: 132 YQLALIARALAQGSDVMLLDEPTSHLDINHTKEIMDLLTRLKDE-KLIIAVLHDLNLALN 190
Query: 280 LSDVIHVV 287
SD I ++
Sbjct: 191 YSDYIVII 198
>gb|AAF22612.1|AF161268_1 (AF161268) ATP binding protein MalK [Thermoanaerobacter
ethanolicus]
Length = 371
Score = 85.8 bits (209), Expect = 1e-15
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 23/185 (12%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------------EWDLTVAYKPQY 411
I E + +VGP+G GKTT ++M+AG+E T+G + + D+ + ++
Sbjct: 31 IEDKEFVVLVGPSGCGKTTTLRMIAGLERQTKGNIYIGEKLVNYLPPKDRDIAMVFQDYA 90
Query: 412 IKAEYEGTVYELLS------KIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQR 465
+ TVYE LS K+ +++ + + LGI +L DR +LSGG+ QR
Sbjct: 91 LYPHM--TVYENLSFGLRNLKVPRTEIEQKVKRAAEI--LGISELLDRKPRELSGGQRQR 146
Query: 466 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 525
VA+ ++R+ ++L DEP + LD + R+ + + L +K E T + V HD + +
Sbjct: 147 VAVGRAIVRNPKVFLFDEPLSNLDAKLRVQMRVELAELHKKLETTIVYVTHDQVEAMTLG 206
Query: 526 DRLIV 530
R+IV
Sbjct: 207 QRIIV 211
>gb|AAF49142.1| (AE003516) CG9330 gene product [Drosophila melanogaster]
Length = 708
Score = 85.8 bits (209), Expect = 1e-15
Identities = 124/497 (24%), Positives = 201/497 (39%), Gaps = 88/497 (17%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQL--IPN-----------LCEDNDSWDNVIRAFRGNE 149
G G+VG NG GKTT ++++A + IP+ + +D + ++V+ E
Sbjct: 203 GRRYGLVGRNGLGKTTLLRMIAERQLQIPSHISVLHVEQEVVGDDTPAVESVLEC--DTE 260
Query: 150 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE---VGKFEEVVKELELEN 206
R K EI + D + L+ ++ V + ++K L +
Sbjct: 261 RTRLLTREK--EILAALNNGVQDATLSNELSETYASLQNIEADKAVARASVILKGLGFDA 318
Query: 207 VLD-RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK 265
+ R SGG R+A+A AL K DEP++ LDI+ + + ++ A
Sbjct: 319 DMQLRPTKSFSGGWRMRLALARALFSKPDLLLLDEPTNMLDIKAIIWLENYLQTWAT--- 375
Query: 266 AVLVVEHDLAVLDYL-SDVIHVVYGE----PGVYGIFSKPK---------------GTRN 305
+LVV HD LD + +D+IH+ E G Y F K K R
Sbjct: 376 TILVVSHDRNFLDTVPTDIIHLHSQELEAYKGNYEQFEKTKTEKLKSQRREYEAQMAHRA 435
Query: 306 GINEFLQGYLKDENVRFRPYEIR-----FTKLSERVDVERETLVEY----------PRLV 350
+ +F+ + + N R ++ KL E VE+ET+V P L
Sbjct: 436 HVQDFIDRFRYNAN---RASSVQSKIKMLEKLPELKPVEKETVVTLKFPEVEPLNPPVLA 492
Query: 351 KDYGSFKLEVE-PGEIRKG--------EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-- 399
+F+ E P I KG I IVG NG GK+T +K++ G G +
Sbjct: 493 ISEVTFRYNPEDPLPIFKGVNLSATSDSRICIVGENGAGKSTLLKIIVGQLSTIHGNIVL 552
Query: 400 EWDLTVAYKPQY------IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDR 453
L + Y Q+ + G + EL + + PL + +
Sbjct: 553 HRGLRIGYFAQHHVDHLNMNVTCVGVLAELFPGRPDEEYRRQLGSFGISGPLAL-----Q 607
Query: 454 NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 513
++ LSGG+ RVA+A + + + +LDEP+ +LD+E A+ RAI + ++
Sbjct: 608 SIASLSGGQKSRVALAKMCMAEPNFLVLDEPTNHLDIETIDALGRAINAF----KGGVIL 663
Query: 514 VEHDVLMIDYVSDRLIV 530
V HD +I V L V
Sbjct: 664 VSHDERLIKVVCKELWV 680
>gb|AAK42824.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 314
Score = 85.4 bits (208), Expect = 2e-15
Identities = 58/207 (28%), Positives = 108/207 (52%), Gaps = 18/207 (8%)
Query: 343 LVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-- 399
++ + K +GSFK ++ + KGE I+G +G GKTT ++++AG+E+ + GK+
Sbjct: 1 MITLKEVTKFFGSFKVIDSISLNVEKGEFFVILGKSGSGKTTLLRLIAGLEKVSSGKILI 60
Query: 400 -----------EWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKT---ELLKPL 445
+ D+ + ++ Y + L+ +++S++N + E+ K L
Sbjct: 61 SNEDVTDLPPSKRDIGMVFQ-SYALYPNKKVFENLMIALENSEINKKDKEERIIEISKQL 119
Query: 446 GIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 505
I L D+ LSGG+ QRVAIA L++ + L+DEP + LDV+ R + + I+ + +
Sbjct: 120 EIYHLMDKYPAQLSGGQQQRVAIAKALVKRPKVLLMDEPLSNLDVQLRYSARKLIKKVQK 179
Query: 506 KNEKTALVVEHDVLMIDYVSDRLIVFE 532
+ T + V HD ++DR+ V +
Sbjct: 180 EFNITTIYVTHDSNEALAIADRIGVID 206
>sp|P45167|UUP2_HAEIN ABC TRANSPORTER ATP-BINDING PROTEIN UUP-2 >gi|1074740|pir||B64171
ABC-type transport protein uup-2 - Haemophilus
influenzae (strain Rd KW20) >gi|1574802|gb|AAC22987.1|
(U32813) ABC transporter, ATP-binding protein
[Haemophilus influenzae Rd]
Length = 459
Score = 85.4 bits (208), Expect = 2e-15
Identities = 67/230 (29%), Positives = 106/230 (45%), Gaps = 12/230 (5%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE--WDLTVAYKPQYIKAEYEGTVYE 422
I +G+ I +VGPNG GKTTF+K+L G +PT GK+ L +AY QY +A+ +
Sbjct: 154 ILRGDKIALVGPNGCGKTTFIKLLLGEIQPTSGKIRCGTKLEIAYFDQY-RADLDPEKIV 212
Query: 423 LLSKIDSSK-LNSNFYKTELLKPLGIIDLYDRN----VEDLSGGELQRVAIAATLLRDAD 477
+ + D + + N K +L L + V+ LSGGE R+ +A LL+ +
Sbjct: 213 MDNVADGKQDIEINGVKRHVLGYLQEFLFPPKRAMTPVKALSGGERNRLLLAKLLLKPNN 272
Query: 478 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGR 537
+ +LDEP+ LDVE + ++ + T L+V HD ID + +FEGE
Sbjct: 273 LLILDEPTNDLDVE----TLELLEEILTDYQGTLLIVSHDRQFIDNTATECYLFEGEGRL 328
Query: 538 HGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKAR 587
+ ++ F AS + + P + DR K +
Sbjct: 329 NKYVGGFFDAKQQQANFWASKAVEEQAKAKKSEPLKEESAVKNDRTSKPK 378
>emb|CAA07722.1| (AJ007906) FhuC [Rhizobium leguminosarum]
Length = 268
Score = 85.4 bits (208), Expect = 2e-15
Identities = 69/204 (33%), Positives = 106/204 (51%), Gaps = 38/204 (18%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 162
G VV +VG NG+GK++ +K+LA QL+P+ + S+ N +L+ Y ER
Sbjct: 40 GEVVALVGHNGSGKSSLLKMLARQLVPSA--GSISYGN-------RDLRTYGER------ 84
Query: 163 RPVVKPQYVDLLPKAV----KGKVRELL--------------KKVDEVGKFEEVVKELEL 204
V + V LP+ V + VREL+ K DE GK EE ++ +
Sbjct: 85 ---VFARSVAYLPQDVTTGSEMTVRELVGCGRYPWHGALGRFTKNDE-GKVEEALRATYI 140
Query: 205 ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE- 263
E DR + LSGGE QR IA + + A DEP++ LD+ +++V ++RRLA+E
Sbjct: 141 EKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHEL 200
Query: 264 GKAVLVVEHDLAVLDYLSDVIHVV 287
G +V++V HD+ + D IH +
Sbjct: 201 GSSVVIVLHDINMAARFCDRIHAL 224
Score = 84.3 bits (205), Expect = 4e-15
Identities = 63/182 (34%), Positives = 88/182 (47%), Gaps = 21/182 (11%)
Query: 368 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DL----------TVAYKPQYIKA 414
GEV+ +VG NG GK++ +KMLA P+ G + + DL +VAY PQ +
Sbjct: 40 GEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTT 99
Query: 415 EYEGTVYELLS--------KIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV 466
E TV EL+ + N E L+ I DR V LSGGE QR
Sbjct: 100 GSEMTVRELVGCGRYPWHGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRA 159
Query: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 526
IA + +DA LLDEP+A LDV ++ V +R L + + ++V HD+ M D
Sbjct: 160 WIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCD 219
Query: 527 RL 528
R+
Sbjct: 220 RI 221
>pir||A75208 sugar transport ATP-binding protein. PAB2232 - Pyrococcus abyssi
(strain Orsay) >gi|5457621|emb|CAB49112.1| (AJ248283)
SUGAR TRANSPORT ATP-BINDING PROTEIN. [Pyrococcus abyssi]
Length = 362
Score = 85.4 bits (208), Expect = 2e-15
Identities = 63/205 (30%), Positives = 107/205 (51%), Gaps = 20/205 (9%)
Query: 344 VEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD 402
+ +VK +G+F L+ EI+ GE + ++GP+G GK+T + +AG+ +PT G++ +D
Sbjct: 4 IRLENIVKKFGNFIALDNINLEIKDGEFMALLGPSGSGKSTLLYTVAGIYKPTSGRIYFD 63
Query: 403 ----LTVAYKPQYIKAEYEG-------TVYELLS------KIDSSKLNSNFYKTELLKPL 445
+ K + I ++ TVY+ ++ K +++ K + K L
Sbjct: 64 ERDVTELPPKDRNIGLVFQNWALYPHMTVYKNIAFPLELRKAPKDEIDEKVRK--VAKML 121
Query: 446 GIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 505
I L DR LSGG+ QRVAIA L+++ ++ LLDEP + LD RL V ++ L +
Sbjct: 122 HIEKLLDRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181
Query: 506 KNEKTALVVEHDVLMIDYVSDRLIV 530
+ T + V HD ++DR+ V
Sbjct: 182 ELGITTIYVTHDQAEALAMADRIAV 206
Score = 78.8 bits (191), Expect = 2e-13
Identities = 89/312 (28%), Positives = 143/312 (45%), Gaps = 37/312 (11%)
Query: 81 EDCVHRYGVNAFVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN----LCEDN 135
E+ V ++G N L + + +KDG + ++GP+G+GK+T + +AG P ++
Sbjct: 7 ENIVKKFG-NFIALDNINLEIKDGEFMALLGPSGSGKSTLLYTVAGIYKPTSGRIYFDER 65
Query: 136 DSWD------NVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV 189
D + N+ F+ L + KN + P + PK ++
Sbjct: 66 DVTELPPKDRNIGLVFQNWALYPHMTVYKN-----IAFPLELRKAPK----------DEI 110
Query: 190 DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 249
DE K +V K L +E +LDR QLSGG+ QRVAIA AL+++ DEP S LD
Sbjct: 111 DE--KVRKVAKMLHIEKLLDRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALL 168
Query: 250 RLKVARVIRRLANE-GKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGIN 308
RL+V ++RL E G + V HD A ++D I V+ E + + + + +
Sbjct: 169 RLEVRAELKRLQKELGITTIYVTHDQAEALAMADRIAVI-REGKILQVGTPDEVYYKPMY 227
Query: 309 EFLQGYLKDENVRFRPYEIRFTKL----SERVDVERETLVEYPRL-VKDYGSFKLEVEPG 363
+F+ G+L + + F + KL + + V ++ RL VKD
Sbjct: 228 KFVGGFLGNPPMNFVEARVEDGKLLISENNYIPVPKQYRQIIERLNVKDV-IIGFRPHDA 286
Query: 364 EIRKGEVIGIVG 375
E+ KG GIVG
Sbjct: 287 EVIKGISEGIVG 298
>pir||E75108 daunorubicin resistance ATP-binding protein (drra-1) PAB1923 -
Pyrococcus abyssi (strain Orsay)
>gi|5458093|emb|CAB49582.1| (AJ248285) daunorubicin
resistance ATP-binding protein (drrA-1) [Pyrococcus
abyssi]
Length = 328
Score = 85.4 bits (208), Expect = 2e-15
Identities = 64/218 (29%), Positives = 108/218 (49%), Gaps = 26/218 (11%)
Query: 344 VEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK-VEW 401
+E LVK YG F ++ +++KGE+ +GPNG GKTT V +L + +PT GK +
Sbjct: 4 IEVENLVKKYGDFTAVKGISFKVKKGEIFAFLGPNGAGKTTTVHVLTTLLKPTSGKAIVA 63
Query: 402 DLTVAYKPQYIKAEY-----------EGTVYE------LLSKIDSSKLNSNFYKTELLKP 444
V +PQ ++ + E T YE ++ + +L ELLK
Sbjct: 64 GHDVVKEPQEVRKKIGIVFQDPSLDRELTAYENMYIHGMIYGLKGRELKEKI--EELLKF 121
Query: 445 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 504
+ + DR V+ SGG +R+ IA L+ + +I LDEP+ LD + R + IR +
Sbjct: 122 VELWRFKDRPVKYFSGGMQRRLEIARALIHEPEILFLDEPTIGLDPQTRAHIWEYIRTMK 181
Query: 505 EKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRAL 542
E++E T + H + + ++DR+ + + HG+ +
Sbjct: 182 EEHEMTIFLTTHYMDEAEQLADRIAIID-----HGKII 214
>sp|P43672|UUP_ECOLI ABC TRANSPORTER ATP-BINDING PROTEIN UUP >gi|7445683|pir||D64835
ABC-type transport protein uup - Escherichia coli
>gi|1787182|gb|AAC74035.1| (AE000197) putative
ATP-binding component of a transport system [Escherichia
coli K12] >gi|4062519|dbj|BAA35707.1| (D90733)
Hypothetical protein HI1300 [Escherichia coli]
Length = 635
Score = 85.4 bits (208), Expect = 2e-15
Identities = 121/515 (23%), Positives = 215/515 (41%), Gaps = 96/515 (18%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQ--------------LIPNLCEDND-SWDNVIRA 144
++D V +VG NG GK+T +KIL + ++ L +D + + +
Sbjct: 26 IEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVEGSVYD 85
Query: 145 FRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKE--- 201
F ++ E LK +Y D+ + V E K ++E+ K +E +
Sbjct: 86 FVAEGIEEQAEYLK----------RYHDI-SRLVMNDPSE--KNLNELAKVQEQLDHHNL 132
Query: 202 LELENVLDRELHQL-----------SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQR 250
+LEN ++ L QL SGG L++ A+ AL+ DEP+++LDI
Sbjct: 133 WQLENRINEVLAQLGLDPNVALSSLSGGWLRKAALGRALVSNPRVLLLDEPTNHLDIET- 191
Query: 251 LKVARVIRRLANEGKAVLVVEHDLAVLDYLSD-VIHVVYGE----PGVYGIFSKPKGTRN 305
+ + L ++ + HD + + ++ ++ + G+ PG Y + K
Sbjct: 192 --IDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQYLLEKEEAL 249
Query: 306 GINEFLQGY----LKDENVRFRP-YEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEV 360
+ E L E V R + R T+ RV + E + G+ K++V
Sbjct: 250 RVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERGERREVMGTAKMQV 309
Query: 361 EPG----------------------------EIRKGEVIGIVGPNGIGKTTFVKMLAGVE 392
E ++ +G+ I ++GPNG GKTT +K++ G
Sbjct: 310 EEASRSGKIVFEMEDVCYQVNGKQLVKDFSAQVLRGDKIALIGPNGCGKTTLLKLMLGQL 369
Query: 393 EPTEGKVE--WDLTVAYKPQY-IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIID 449
+ G++ L VAY Q+ + + + TV + L++ ++ N +L L
Sbjct: 370 QADSGRIHVGTKLEVAYFDQHRAELDPDKTVMDNLAE-GKQEVMVNGKPRHVLGYLQDFL 428
Query: 450 LYDRN----VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 505
+ + V LSGGE R+ +A L+ +++ +LDEP+ LDVE + L++
Sbjct: 429 FHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVE----TLELLEELID 484
Query: 506 KNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGR 540
+ T L+V HD +D +FEG G+ GR
Sbjct: 485 SYQGTVLLVSHDRQFVDNTVTECWIFEG-GGKIGR 518
>emb|CAA70589.1| (Y09439) UUP protein [Escherichia coli]
Length = 614
Score = 85.4 bits (208), Expect = 2e-15
Identities = 121/515 (23%), Positives = 215/515 (41%), Gaps = 96/515 (18%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQ--------------LIPNLCEDND-SWDNVIRA 144
++D V +VG NG GK+T +KIL + ++ L +D + + +
Sbjct: 26 IEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVEGSVYD 85
Query: 145 FRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKE--- 201
F ++ E LK +Y D+ + V E K ++E+ K +E +
Sbjct: 86 FVAEGIEEQAEYLK----------RYHDI-SRLVMNDPSE--KNLNELAKVQEQLDHHNL 132
Query: 202 LELENVLDRELHQL-----------SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQR 250
+LEN ++ L QL SGG L++ A+ AL+ DEP+++LDI
Sbjct: 133 WQLENRINEVLAQLGLDPNVALSSLSGGWLRKAALGRALVSNPRVLLLDEPTNHLDIET- 191
Query: 251 LKVARVIRRLANEGKAVLVVEHDLAVLDYLSD-VIHVVYGE----PGVYGIFSKPKGTRN 305
+ + L ++ + HD + + ++ ++ + G+ PG Y + K
Sbjct: 192 --IDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQYLLEKEEAL 249
Query: 306 GINEFLQGY----LKDENVRFRP-YEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEV 360
+ E L E V R + R T+ RV + E + G+ K++V
Sbjct: 250 RVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERGERREVMGTAKMQV 309
Query: 361 EPG----------------------------EIRKGEVIGIVGPNGIGKTTFVKMLAGVE 392
E ++ +G+ I ++GPNG GKTT +K++ G
Sbjct: 310 EEASRSGKIVFEMEDVCYQVNGKQLVKDFSAQVLRGDKIALIGPNGCGKTTLLKLMLGQL 369
Query: 393 EPTEGKVE--WDLTVAYKPQY-IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIID 449
+ G++ L VAY Q+ + + + TV + L++ ++ N +L L
Sbjct: 370 QADSGRIHVGTKLEVAYFDQHRAELDPDKTVMDNLAE-GKQEVMVNGKPRHVLGYLQDFL 428
Query: 450 LYDRN----VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 505
+ + V LSGGE R+ +A L+ +++ +LDEP+ LDVE + L++
Sbjct: 429 FHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVE----TLELLEELID 484
Query: 506 KNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGR 540
+ T L+V HD +D +FEG G+ GR
Sbjct: 485 SYQGTVLLVSHDRQFVDNTVTECWIFEG-GGKIGR 518
>gb|AAK41416.1| Sugar ABC transporter [Sulfolobus solfataricus]
Length = 368
Score = 85.0 bits (207), Expect = 2e-15
Identities = 59/169 (34%), Positives = 86/169 (49%), Gaps = 15/169 (8%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-----------DLTVAYKPQYI 412
EI KGE + I+GP+G GKTT +K++AG+ +G V D VA PQ
Sbjct: 30 EIEKGEFVVILGPSGEGKTTILKIIAGLLRQDKGHVYLRGEVVDDLPPKDRRVAMVPQNY 89
Query: 413 KAEYEGTVYEL----LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAI 468
+VY+ L + SK E+ + L I +L +R LSGG++QRVAI
Sbjct: 90 AIYPFMSVYDNIAFPLKVMHLSKDEIKKRVLEVARMLRIDNLLERKPSQLSGGQMQRVAI 149
Query: 469 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 517
A L++ ADI L+DEP + LD + R+ ++ L + T + V HD
Sbjct: 150 ARALVKGADIILMDEPLSNLDAQVRVVAREELKQLQRDLKPTIIYVTHD 198
Score = 79.2 bits (192), Expect = 1e-13
Identities = 84/307 (27%), Positives = 136/307 (43%), Gaps = 53/307 (17%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL-- 157
++ G V I+GP+G GKTT +KI+AG L D +R ++L R+
Sbjct: 31 IEKGEFVVILGPSGEGKTTILKIIAGLL------RQDKGHVYLRGEVVDDLPPKDRRVAM 84
Query: 158 --KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQL 215
+N I P + P V ++ +KK + EV + L ++N+L+R+ QL
Sbjct: 85 VPQNYAIYPFMSVYDNIAFPLKVMHLSKDEIKK-----RVLEVARMLRIDNLLERKPSQL 139
Query: 216 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK-AVLVVEHD- 273
SGG++QRVAIA AL++ A DEP S LD + R+ +++L + K ++ V HD
Sbjct: 140 SGGQMQRVAIARALVKGADIILMDEPLSNLDAQVRVVAREELKQLQRDLKPTIIYVTHDQ 199
Query: 274 ------LAVLDYLSDVIHVVYGEPGVYGIFSKPKGT------RNGINEFLQGYLKDENVR 321
+ L D + YG+P I+ +P N ++G ++ +++
Sbjct: 200 VEALSLATKVAILHDGVVQAYGDP--MEIYKRPNSAWVGSFLGNPPMNIIRGEIEGDSII 257
Query: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEP--------GEIR-KGEVIG 372
Y I + EY LVK+ + V P GEI K E++
Sbjct: 258 IDSYRIGLPE-------------EYKNLVKNGQKVLVGVRPEDMEIRNSGEIEGKVEMVE 304
Query: 373 IVGPNGI 379
+GP I
Sbjct: 305 DLGPYSI 311
>pir||S61910 hypothetical protein 5 - Streptococcus parasanguis
>gi|567769|gb|AAA53075.1| (M26130) ORF5; predicted
protein shows similarity to ATP-binding transport
proteins AmiE and AmiF of Streptococcus pneumoniae;
disruptuion of ORF5 leads to aminopterin resistance
[Streptococcus parasanguinis]
Length = 240
Score = 85.0 bits (207), Expect = 2e-15
Identities = 60/179 (33%), Positives = 95/179 (52%), Gaps = 20/179 (11%)
Query: 370 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--------VAYKPQY--IKAEYEGT 419
++GI+GPNG GK+T +K + G+ P G+V+ D VAY Q I + T
Sbjct: 29 ILGILGPNGAGKSTLIKAMLGLL-PHSGRVQLDQKDLSQVLQRVAYVEQKSAIDFHFPIT 87
Query: 420 VYELLS-------KIDSSKLNSNFYKTE-LLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 471
V E +S I K + K E LK + ++DL DR + LSGG+ QRV IA
Sbjct: 88 VRECVSLGLYPHLSIFKRKSKEDLKKVENALKLVNLLDLADRQIGQLSGGQFQRVLIARC 147
Query: 472 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 530
L+++AD+ LDEP A +D + + ++ L ++ KT L+V HD+ + D++++
Sbjct: 148 LVQEADVIFLDEPFAGIDSVSEDIIMQTLQTLKQEG-KTILIVHHDLSKVPAYFDKVLL 205
Score = 81.5 bits (198), Expect = 2e-14
Identities = 60/196 (30%), Positives = 102/196 (51%), Gaps = 15/196 (7%)
Query: 105 VVGIVGPNGTGKTTAVKILAGQLIPNLCE---DNDSWDNVIRAFRGNELQNYFERLKNGE 161
++GI+GPNG GK+T +K + G L+P+ D V++ E ++ +
Sbjct: 29 ILGILGPNGAGKSTLIKAMLG-LLPHSGRVQLDQKDLSQVLQRVAYVEQKSAIDFHFPIT 87
Query: 162 IRPVVKPQYVDLLP--KAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGE 219
+R V + L P K K +E LKKV E +K + L ++ DR++ QLSGG+
Sbjct: 88 VRECVS---LGLYPHLSIFKRKSKEDLKKV------ENALKLVNLLDLADRQIGQLSGGQ 138
Query: 220 LQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDY 279
QRV IA L+++A F DEP + +D + + ++ L EGK +L+V HDL+ +
Sbjct: 139 FQRVLIARCLVQEADVIFLDEPFAGIDSVSEDIIMQTLQTLKQEGKTILIVHHDLSKVPA 198
Query: 280 LSDVIHVVYGEPGVYG 295
D + +++ + +G
Sbjct: 199 YFDKVLLLHRKLIAFG 214
>sp|P44656|Y354_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN HI0354
>gi|1075067|pir||B64063 nasD protein homolog -
Haemophilus influenzae (strain Rd KW20)
>gi|1573323|gb|AAC22014.1| (U32720) ABC transporter,
ATP-binding protein [Haemophilus influenzae Rd]
Length = 240
Score = 85.0 bits (207), Expect = 2e-15
Identities = 59/192 (30%), Positives = 102/192 (52%), Gaps = 15/192 (7%)
Query: 369 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKID 428
E + ++G +G+GK+T +++LAG+E T+G V+ + K + + T+Y LS +D
Sbjct: 28 EWVSLLGSSGVGKSTLLRLLAGIE--TQGMVQGKILFEPKVRIAWLPQKETLYPWLSIVD 85
Query: 429 SSKLNSNFYKTE----------LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI 478
+ +L + + + LL+ +G+ + + LSGG+ QRVA+A TL+++ D+
Sbjct: 86 NVQLQAVLFGRKSVKTTEKAKMLLEKVGMAAHWHKPCSQLSGGQKQRVALARTLMQEVDL 145
Query: 479 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRH 538
LLDEP + LD R + L+E +K+ L+V HD +S R+ V P H
Sbjct: 146 ILLDEPFSALDAISRHQLQDLAFELLE--DKSVLLVTHDPQEALRLSQRIFVLR-SPETH 202
Query: 539 GRALPPMGMREG 550
AL + + EG
Sbjct: 203 QTALSAVILPEG 214
>sp|P55604|Y4OS_RHISN PROBABLE ABC TRANSPORTER ATP-BINDING PROTEIN Y4OS
>gi|2182563|gb|AAB91805.1| (AE000089) Y4oS [Rhizobium
sp. NGR234]
Length = 371
Score = 85.0 bits (207), Expect = 2e-15
Identities = 65/221 (29%), Positives = 111/221 (49%), Gaps = 23/221 (10%)
Query: 342 TLVEYPRLVKDYGSFKLEVEPG-EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV- 399
T V + K YG+ + + I GE + +VGP+G GK+T ++MLAG+EE + G +
Sbjct: 18 TDVTIRNVTKRYGALTVIPQLSFRIEDGEFVVLVGPSGCGKSTLLRMLAGLEEISGGDLL 77
Query: 400 ------------EWDLTVAYK-----PQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELL 442
E D+ + ++ P AE G +L K ++++ K +
Sbjct: 78 MGADVINDRPAKERDMAIVFQNYALYPHMTVAENMGFALKL-RKRPRAEIDERVDKAAAI 136
Query: 443 KPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 502
LG+ L DR LSGG+ QRVA+ ++RD ++L DEP + LD + R+ + I+
Sbjct: 137 --LGLGKLLDRYPRALSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRAEIKA 194
Query: 503 LMEKNEKTALVVEHDVLMIDYVSDRLIVF-EGEPGRHGRAL 542
L ++ + T + V HD + ++D+++V EG + G L
Sbjct: 195 LHQRLKITTVYVTHDQIEAMTMADKIVVMNEGRVEQMGTPL 235
>dbj|BAB03314.1| (AB011415) AlgS [Sphingomonas sp.]
Length = 363
Score = 85.0 bits (207), Expect = 2e-15
Identities = 57/188 (30%), Positives = 98/188 (51%), Gaps = 20/188 (10%)
Query: 358 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTV----AYKPQYIK 413
L++EPGE + +VGP+G GK+T ++M+AG+EE + G + D V A K + +
Sbjct: 25 LDIEPGEF-----VVLVGPSGCGKSTTLRMVAGLEEISGGTIRIDGRVINDLAPKDRDVA 79
Query: 414 AEYEG-TVYELLSKIDSSKLNSNFYKTE----------LLKPLGIIDLYDRNVEDLSGGE 462
++ +Y L+ D+ +T+ LG+ L +R DLSGG+
Sbjct: 80 MVFQNYALYPHLNVRDNISFGLRLKRTKKSVIDAAVKTAADILGLQPLLERKPSDLSGGQ 139
Query: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 522
QRVA+ ++RD ++L DEP + LD + R + I+ L ++ T + V HD +
Sbjct: 140 RQRVAMGRAIVRDPKVFLFDEPLSNLDAKLRTQMRAEIKRLHQRLGTTVIYVTHDQVEAM 199
Query: 523 YVSDRLIV 530
++DR++V
Sbjct: 200 TLADRIVV 207
>pir||G71131 probable ATP-binding protein - Pyrococcus horikoshii
>gi|3257230|dbj|BAA29913.1| (AP000003) 312aa long
hypothetical ATP-binding protein [Pyrococcus horikoshii]
Length = 312
Score = 84.7 bits (206), Expect = 3e-15
Identities = 64/212 (30%), Positives = 106/212 (49%), Gaps = 24/212 (11%)
Query: 338 VERETLVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE 396
++ ++E L K YG+F + + +GEV G +GPNG GKTT ++ML GV +PT
Sbjct: 2 IKMNVVIEAINLTKYYGNFPAVRGVTFSVNEGEVFGFLGPNGAGKTTTIRMLTGVLKPTS 61
Query: 397 GKVE---WDLTVAYKPQYIKAEYE-GTVYEL------LSKIDSSKLNSNFY--------- 437
G+V +D+T +P+ +KA G V E+ L+ + + KL Y
Sbjct: 62 GQVRVLGYDMT--REPEKLKARQRMGIVPEMANPYIDLTAMQNLKLMGELYGLPKWEIEK 119
Query: 438 -KTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 496
ELLK + + + V S G QR+ +A ++ D ++Y LDEP++ LDV +
Sbjct: 120 RSIELLKLFELYEKRNIKVRGFSKGMRQRLVLAMAMIADPELYFLDEPTSGLDVISARII 179
Query: 497 SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 528
IR +K KT + H++ + + +R+
Sbjct: 180 KDIIRD-EKKAGKTIFLTTHNMNDANELCERI 210
Score = 74.5 bits (180), Expect = 3e-12
Identities = 75/297 (25%), Positives = 131/297 (43%), Gaps = 23/297 (7%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
V +G V G +GPNG GKTT +++L G L P +R G ++ E+LK
Sbjct: 30 VNEGEVFGFLGPNGAGKTTTIRMLTGVLKPT--------SGQVRVL-GYDMTREPEKLKA 80
Query: 160 GE---IRPVVKPQYVDLLPKAVKGKVREL--LKKVDEVGKFEEVVKELELENVLDRELHQ 214
+ I P + Y+DL + EL L K + + E++K EL + ++
Sbjct: 81 RQRMGIVPEMANPYIDLTAMQNLKLMGELYGLPKWEIEKRSIELLKLFELYEKRNIKVRG 140
Query: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
S G QR+ +A A++ YF DEP+S LD+ + +IR GK + + H++
Sbjct: 141 FSKGMRQRLVLAMAMIADPELYFLDEPTSGLDVISARIIKDIIRDEKKAGKTIFLTTHNM 200
Query: 275 AVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSE 334
+ L + I ++ G P+G + E L + + + F P + E
Sbjct: 201 NDANELCERIGII--RKGKLVAIDTPEGLKRLTKEHLSVEVSLKPMMFDPSVLSSALRVE 258
Query: 335 RVDVERETLVEYP-RLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG 390
R+ + + P + VK+ VE + RK +++ I + + FV+++ G
Sbjct: 259 RLGDKVKIYTNDPDKTVKEI------VEYAKERKLKIVSIRTLSPSLEDVFVEIIGG 309
>pir||T35090 probable ABC transport ATP-binding subunit - Streptomyces
coelicolor >gi|5596806|emb|CAB51453.1| (AL096884)
putative ABC transport ATP-binding subunit [Streptomyces
coelicolor A3(2)]
Length = 324
Score = 84.7 bits (206), Expect = 3e-15
Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 18/202 (8%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE---WDLT---------VAYKPQY 411
+IR+GE+ G++GPNG GK+T V+ L G+ P G VE D+ +AY Q
Sbjct: 35 DIRRGEIFGLLGPNGAGKSTLVRQLTGLMRPDGGSVEILGHDIVRHPERAARILAYLGQE 94
Query: 412 IKAEYEGTVY---ELLSKIDSSKLN-SNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVA 467
A E TV E ++ ++ + + +L+ LG+ L R ++ LSGG+ +
Sbjct: 95 SSALDELTVSLAAETTGRLRGLEVRRARAERDAVLEELGLTGLAGRPIKKLSGGQRRLAC 154
Query: 468 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 527
AA L+ + + +LDEP+ +D R AV A+ ++ T L+V H+V+ + V DR
Sbjct: 155 FAAALVGERPLLVLDEPTTGMDPVARRAVWSAVDRRRAEHGATVLLVTHNVIEAETVLDR 214
Query: 528 LIVFEGEPGRHGRALPPMGMRE 549
+ V + GR P G++E
Sbjct: 215 VAVL--DRGRVIACDTPAGLKE 234
>dbj|BAB04758.1| (AP001510) iron (III) dicitrate transport system (permease)
[Bacillus halodurans]
Length = 271
Score = 84.7 bits (206), Expect = 3e-15
Identities = 61/201 (30%), Positives = 101/201 (49%), Gaps = 32/201 (15%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------------EWDLTVAYKPQY 411
I KGE+ ++G NG GK+T ++ LA + +P G V E +A PQ
Sbjct: 26 IPKGEITVLIGGNGCGKSTLLRSLARLLKPQSGAVLLEGSSIQQLATKEVATKLAILPQG 85
Query: 412 IKAEYEGTVYELLSKIDSSKLNSNFYKT----------ELLKPLGIIDLYDRNVEDLSGG 461
+A TVY+L+ + + +K + L+ + +L DR V+ LSGG
Sbjct: 86 PEAPEGLTVYQLIKQ--GRYPHQGLFKKWTSKDEEKVMQALEATRLTELADRPVDALSGG 143
Query: 462 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM- 520
+ QR IA TL +D +I LLDEP+ YLD+ ++ + + L E+ ++T ++V HD+ +
Sbjct: 144 QRQRAWIAMTLAQDTEIILLDEPTTYLDLTHQIEILDLLFELNEREKRTIVMVLHDLNLA 203
Query: 521 ------IDYVSDRLIVFEGEP 535
+ V DR + +G+P
Sbjct: 204 CRYAHHLIAVKDRTVYAQGKP 224
>sp|P42360|YSC1_STRGC HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN IN SCAA 5'REGION
(ORF1) >gi|7445846|pir||T11549 ATP binding protein -
Streptococcus gordonii >gi|310631|gb|AAA71945.1|
(L11577) ATP binding protein [Streptococcus gordonii]
Length = 251
Score = 84.3 bits (205), Expect = 4e-15
Identities = 59/189 (31%), Positives = 99/189 (52%), Gaps = 12/189 (6%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE---DNDSWDNVIRAFRGNELQNYFER 156
+K + GI+GPNG GK+T +K L G ++ + + D D ++ Y E+
Sbjct: 36 IKGPTITGIIGPNGAGKSTLIKGLLG-IVDHQGQALLDGQPLDKELKRIA------YVEQ 88
Query: 157 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLS 216
N + +K + L K K+ + LK D K + +K + LE+ +R++ QLS
Sbjct: 89 KINIDYNFPIKVKECVSLGLYPKIKLFQRLKTSDW-DKVNQALKIVGLEDFAERQISQLS 147
Query: 217 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA- 275
GG+ QRV IA L+++A + F DEP +D + + +R+L +GK +L+V HDL+
Sbjct: 148 GGQFQRVLIARCLVQEADYIFLDEPFVGIDSVSEEIIMKTLRQLRKDGKTILIVHHDLSK 207
Query: 276 VLDYLSDVI 284
V+ Y V+
Sbjct: 208 VVAYFDQVL 216
Score = 81.9 bits (199), Expect = 2e-14
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 33/213 (15%)
Query: 343 LVEYPRLVKDY-GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW 401
++E L Y G L+ I+ + GI+GPNG GK+T +K L G+ + +G+
Sbjct: 13 MIEIQNLSVSYQGQLALDKANVTIKGPTITGIIGPNGAGKSTLIKGLLGIVDH-QGQALL 71
Query: 402 D--------LTVAYKPQYIKAEYEGTV----------------YELLSKIDSSKLNSNFY 437
D +AY Q I +Y + ++ L D K+N
Sbjct: 72 DGQPLDKELKRIAYVEQKINIDYNFPIKVKECVSLGLYPKIKLFQRLKTSDWDKVN---- 127
Query: 438 KTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 497
+ LK +G+ D +R + LSGG+ QRV IA L+++AD LDEP +D +
Sbjct: 128 --QALKIVGLEDFAERQISQLSGGQFQRVLIARCLVQEADYIFLDEPFVGIDSVSEEIIM 185
Query: 498 RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 530
+ +R L K+ KT L+V HD+ + D++++
Sbjct: 186 KTLRQL-RKDGKTILIVHHDLSKVVAYFDQVLL 217
>sp|P97027|SSUB_BACSU PUTATIVE ALIPHATIC SULFONATES TRANSPORT ATP-BINDING PROTEIN SSUB
>gi|7445768|pir||G69816 nitrate ABC transporter (binding
protein) homolog ygaL - Bacillus subtilis
>gi|1903038|emb|CAB07520.1| (Z93102) hypothetical 30.6
kd protein [Bacillus subtilis]
>gi|2633206|emb|CAB12711.1| (Z99108) similar to nitrate
ABC transporter (binding protein) [Bacillus subtilis]
Length = 274
Score = 84.3 bits (205), Expect = 4e-15
Identities = 61/228 (26%), Positives = 111/228 (47%), Gaps = 20/228 (8%)
Query: 328 RFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKM 387
R KL+ + ++ + V+ R + +L + PGE + ++GP+G GK+T +K+
Sbjct: 16 RGIKLAVTISIKEKAFVQEGRKNTVLENIELSIAPGEF-----LTLIGPSGCGKSTLLKI 70
Query: 388 LAGVEEPTEGKVEWDLTVAYKPQ----YIKAEYEGTVYELLSKIDSSKLNSNFYKT---- 439
+AG++ +G VE + P +I E+ + + + ++ LN K
Sbjct: 71 IAGLDSEYDGSVEINGRSVTAPGIQQGFIFQEHRLFPWLTVEQNIAADLNLKDPKVKQKV 130
Query: 440 ----ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 495
E+++ G Y R +LSGG QRVAI LLR+ ++ LLDEP LD R
Sbjct: 131 DELIEIVRLKGSEKAYPR---ELSGGMSQRVAITRALLREPEVLLLDEPFGALDAFTRKH 187
Query: 496 VSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALP 543
+ + + K + T ++V HD+ Y+ + L + + +PG+ + +P
Sbjct: 188 LQDVLLDIWRKKKTTMILVTHDIDESVYLGNELAILKAKPGKIHKLMP 235
>pir||T46652 ABC transporter ZurA [imported] - Listeria monocytogenes
>gi|5019734|gb|AAD37835.1|AF104349_1 (AF104349) ABC
transporter ZurA [Listeria monocytogenes]
Length = 257
Score = 84.3 bits (205), Expect = 4e-15
Identities = 59/197 (29%), Positives = 102/197 (50%), Gaps = 27/197 (13%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-----------EWDLT--VAYKPQ 410
++ KG G++GPNG GK+T +K++ GV + +G + +W V+ K
Sbjct: 26 QVAKGSFTGLIGPNGSGKSTMLKLILGVLKKQQGSISLFGEKQADFKDWVKIGFVSQKSN 85
Query: 411 YIKAEYEGTVYELLS-----KIDSSKLNSNFYKTEL---LKPLGIIDLYDRNVEDLSGGE 462
+ + TV E+++ K K +N K ++ LK + + D RN+ +LSGG+
Sbjct: 86 AFNSAFPATVKEVVASGLTKKKGLFKTLNNKDKEDIDYALKRVEMTDYLHRNIGELSGGQ 145
Query: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 522
QRV IA L+ ++ +LDEP+ +DVE A + L E T L+V HD++ ++
Sbjct: 146 QQRVFIARALVSRPELLILDEPTVGVDVENVKAFYELLAELNRTEEMTLLLVTHDLMAVN 205
Query: 523 -YVS-----DRLIVFEG 533
YV+ ++ I+F+G
Sbjct: 206 TYVNHVISINKRIIFDG 222
>pir||D72492 probable ABC transporter ATP-binding protein APE2579 - Aeropyrum
pernix (strain K1) >gi|5106285|dbj|BAA81596.1|
(AP000064) 333aa long hypothetical ABC transporter
ATP-binding protein [Aeropyrum pernix]
Length = 333
Score = 84.3 bits (205), Expect = 4e-15
Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 27/223 (12%)
Query: 338 VERETLVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE 396
+E E +V LVKDYG F+ ++ I +GE+ ++GPNG GKTT +KML+ + PT
Sbjct: 4 LESEAMVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTS 63
Query: 397 GKVEW--DLTVAYKPQYIK-----AEYEGTVYELLSKIDSSKLNSNFY----------KT 439
G+ W ++ +P ++ + T + +S D+ + + Y
Sbjct: 64 GEA-WIAGYSIVREPGNVRRVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEARERTR 122
Query: 440 ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 499
E+L L +++ R V SGG +++ IA +L+ + LDEP+ LDV R ++ R
Sbjct: 123 EVLDYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRY 182
Query: 500 IRHLMEKNEKTALVVEHDVLMIDYVSDRL-------IVFEGEP 535
I L +++ T L+ H + + +SDR+ IV EG P
Sbjct: 183 IEDL-KRSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTP 224
>dbj|BAB04800.1| (AP001510) ferrichrome ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 274
Score = 84.3 bits (205), Expect = 4e-15
Identities = 68/229 (29%), Positives = 109/229 (46%), Gaps = 24/229 (10%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYK-------------PQY 411
I +G++ I+G NG GK+T +K ++ + P G D +K PQ
Sbjct: 26 IPEGKITTIIGANGCGKSTILKTISRIHAPQSGVAYLDGKAIHKQKTRDIAKKMAILPQT 85
Query: 412 IKAEYEGTVYELLS------KIDSSKLNSNFYKT--ELLKPLGIIDLYDRNVEDLSGGEL 463
++ E TVYEL+S + +L ++ + L G+ + R ++ LSGG+
Sbjct: 86 PESPGELTVYELVSYGRFPHQKGFGRLTEADHQIVEKALHSTGLEEFRHRPIQALSGGQR 145
Query: 464 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 523
QRV IA L + + LLDEP+ YLD+ +L V ++ L E+ +T ++V HD+
Sbjct: 146 QRVWIAMALAQQTPLLLLDEPTTYLDMAHQLEVLLLLKKLNEQEGRTIVMVLHDLNHAAR 205
Query: 524 VSDRLIVF-EGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRP 571
SD LI +G + G P M + R + + T DP SG+P
Sbjct: 206 FSDYLIALRKGTVVKEG--TPEDVMCSDVLRDVFQIEATIVNDPTSGKP 252
>dbj|BAB05817.1| (AP001514) ABC transporter (ATP-binding protein) (daunorubicin
resistance) [Bacillus halodurans]
Length = 310
Score = 84.3 bits (205), Expect = 4e-15
Identities = 53/184 (28%), Positives = 91/184 (48%), Gaps = 16/184 (8%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD------------LTVAYKPQYI 412
+ GE +G++GPNG GK+T + M++ + +PT G+++ + + PQ +
Sbjct: 24 LNSGESVGLLGPNGAGKSTTISMISTLIKPTSGEIKLNGINIISHPGDIRKILGVVPQEL 83
Query: 413 KAEYEGTVYELLSKIDSS-KLNSNFYKTELLKPLGIIDLYDRN---VEDLSGGELQRVAI 468
E + YE L S+ K+ + + L I+ L DR V+ SGG +R+ I
Sbjct: 84 ALYQELSAYENLKFFGSTYKMKGKHLENRIQHALEIVGLKDRQKDLVKTFSGGMKRRINI 143
Query: 469 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 528
AA LL + I +LDEP+ +D + R + +R L E T L H + ++ + DRL
Sbjct: 144 AAALLHEPKILILDEPTVGIDPQSRNHILETVRTLNENEGTTVLYTSHYMEEVEQLCDRL 203
Query: 529 IVFE 532
+ +
Sbjct: 204 YIMD 207
>gb|AAG24255.1| (AY009114) YckI [Bacillus subtilis]
Length = 247
Score = 84.3 bits (205), Expect = 4e-15
Identities = 71/217 (32%), Positives = 114/217 (51%), Gaps = 17/217 (7%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFER 156
++ G V+ I+GP+G+GKTT ++ L IPN L D+ S D + + + LQ R
Sbjct: 24 IEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAFDDFSIDFSKKVKQSDILQL---R 80
Query: 157 LKNGEIRPVVKP-QYVDLLPKAVKGKVRELLKKVDEVGKFE-EVVKELELENVLDRELHQ 214
K+G + + L ++G V+ + +EV K +++ ++ L++ +D Q
Sbjct: 81 RKSGMVFQAYHLFPHRTALENVMEGPVQVQKRNKEEVRKEAIQLLDKVGLKDKMDLYPFQ 140
Query: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
LSGG+ QRV IA AL + FDEP+S LD +V +VI+ LANEG ++VV H++
Sbjct: 141 LSGGQQQRVGIARALAIQPELMLFDEPTSALDPELVGEVLKVIKDLANEGWTMVVVTHEI 200
Query: 275 AVLDYLSDVIHVVYGEPGVY-------GIFSKPKGTR 304
++D V++ + GV IFS PK R
Sbjct: 201 KFAQEVAD--EVIFIDGGVIVEQGPPEEIFSAPKEER 235
Score = 73.7 bits (178), Expect = 5e-12
Identities = 56/194 (28%), Positives = 94/194 (47%), Gaps = 25/194 (12%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-DLTVAYKPQYIKAEY------ 416
+I KG+VI I+GP+G GKTT ++ L +E P G++ + D ++ + + +++
Sbjct: 23 KIEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAFDDFSIDFSKKVKQSDILQLRRK 82
Query: 417 EGTVYE--------------LLSKIDSSKLNSNFYKTE---LLKPLGIIDLYDRNVEDLS 459
G V++ + + K N + E LL +G+ D D LS
Sbjct: 83 SGMVFQAYHLFPHRTALENVMEGPVQVQKRNKEEVRKEAIQLLDKVGLKDKMDLYPFQLS 142
Query: 460 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 519
GG+ QRV IA L ++ L DEP++ LD E V + I+ L + T +VV H++
Sbjct: 143 GGQQQRVGIARALAIQPELMLFDEPTSALDPELVGEVLKVIKDLANEG-WTMVVVTHEIK 201
Query: 520 MIDYVSDRLIVFEG 533
V+D +I +G
Sbjct: 202 FAQEVADEVIFIDG 215
>dbj|BAB07160.1| (AP001518) L-arabinose ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 517
Score = 83.9 bits (204), Expect = 5e-15
Identities = 109/481 (22%), Positives = 201/481 (41%), Gaps = 82/481 (17%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
V+ G + +VG NG GK+T +K+L+G + P+ + D F G Q F+ +K
Sbjct: 30 VEQGEIHALVGENGAGKSTLMKVLSG-VYPHGTYEGDI------LFEGRVCQ--FKDIKE 80
Query: 160 GE-IRPVVKPQYVDLLPKA------------VKGKVRELLKKVDEVGKFEEVVKELELEN 206
E + V+ Q + L+P+ K V + + + E K ++K++ L +
Sbjct: 81 SEQLGIVIIHQELALVPELSIAENIFLGNEQAKNGVIDWNQTITEAAK---LLKKVGLSD 137
Query: 207 VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKA 266
+ G+ Q V IA AL +K DEP++ L+ + ++ +G
Sbjct: 138 SPRTLAMNIGVGKQQLVEIAKALSKKVKLLILDEPTAALNEEDSQNLLHLLLEFKKQGMT 197
Query: 267 VLVVEHDLAVLDYLSDVIHVVYGEPGVYGI-FSKPKGTRNGINEFLQGYLKDENVRFRPY 325
+++ H L + Y++D + ++ + + + T + I + + G +D RF P
Sbjct: 198 SIIISHKLNEISYVADHLTILRDGQSIETLSLQSGEVTEDRIIKGMVG--RDLENRFPPR 255
Query: 326 EIRFTKLSERVDVERETLVEYP--RLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTT 383
E + + V+ +P L+KD + +++GE++G+ G G G+T
Sbjct: 256 EPKIGDVILEVNHWHVDDPLHPDRSLIKDVNLY--------LKRGEIVGVAGLMGAGRTE 307
Query: 384 FVKMLAG-----------VEEPTEGKVEW-----DLTVAYKPQYIKAEYEGTVYELLSKI 427
+ G +++ E KV D +AY + K Y L+ I
Sbjct: 308 LAMSIFGKSYGKNIRGQLIKDGKEIKVHSVKDAIDHGLAYVTEDRKT------YGLIL-I 360
Query: 428 DSSKLNSNFYKTELLKPLGIIDL--------------------YDRNVEDLSGGELQRVA 467
D K N + E L G++D D+ +LSGG Q+V
Sbjct: 361 DDIKHNISLTSLEKLSKNGVVDKTREVKEAEDFRKKMNIRTPSIDQKTGNLSGGNQQKVV 420
Query: 468 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 527
++ +L DI +LDEP+ +DV + + I H + K LV+ ++ + +SDR
Sbjct: 421 LSKWILSGPDILILDEPTRGIDVGAKYEIYSVI-HELAAQGKAVLVISSELPELLGLSDR 479
Query: 528 L 528
+
Sbjct: 480 I 480
>sp|P16676|CYSA_ECOLI SULFATE TRANSPORT ATP-BINDING PROTEIN CYSA >gi|7428825|pir||QRECSA
sulfate transport ATP-binding protein cysA - Escherichia
coli >gi|1788761|gb|AAC75475.1| (AE000329) ATP-binding
component of sulfate permease A protein; chromate
resistance [Escherichia coli K12]
>gi|1799841|dbj|BAA16296.1| (D90871) sulfate/thiosulfate
transport protein cysA [Escherichia coli]
>gi|1799851|dbj|BAA16305.1| (D90872) sulfate/thiosulfate
transport protein cysA [Escherichia coli]
Length = 365
Score = 83.9 bits (204), Expect = 5e-15
Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 24/213 (11%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-----------DLTVAYKPQYI 412
+I G+++ ++GP+G GKTT ++++AG+E T G + + D V + Q+
Sbjct: 24 DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHY 83
Query: 413 KAEYEGTVYELLS----------KIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGE 462
TV++ ++ + +++ + + T+LL+ + + L DR LSGG+
Sbjct: 84 ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV--TKLLEMVQLAHLADRYPAQLSGGQ 141
Query: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 522
QRVA+A L + I LLDEP LD + R + R +R L E+ + T++ V HD
Sbjct: 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAT 201
Query: 523 YVSDRLIVFEGEPGRHGRALPPMGMREGMNRFL 555
V+DR++V A P RE RF+
Sbjct: 202 EVADRVVVMSQGNIEQADA-PDQVWREPATRFV 233
>pir||C69992 ABC transporter (ATP-binding protein) homolog ytgB - Bacillus
subtilis >gi|2293152|gb|AAC00230.1| (AF008220) putative
transporter [Bacillus subtilis]
>gi|2635560|emb|CAB15054.1| (Z99119) similar to ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 250
Score = 83.9 bits (204), Expect = 5e-15
Identities = 58/178 (32%), Positives = 86/178 (47%), Gaps = 29/178 (16%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-----------------------PTEGKVE 400
++ +G++IGI+GPNG GK+T +K + G+ P G V+
Sbjct: 25 QVPEGKLIGIIGPNGAGKSTLIKTILGLVPRASGDISIYGKDYKDQRTRIGYVPQRGSVD 84
Query: 401 WDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSG 460
WD + + Y G + LL + K + K L K +G+ D R + LSG
Sbjct: 85 WDFPTSPLDVVLMGRY-GRI-GLLKR--PKKADVEMAKAALTK-VGMHDYAKRQISQLSG 139
Query: 461 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 518
G+ QRV +A L ++ADIY +DEP A +D A+ + L EK KT LVV HD+
Sbjct: 140 GQQQRVFLARALCQNADIYFMDEPFAGVDAATERAIMTLLAELKEKG-KTVLVVHHDL 196
Score = 81.5 bits (198), Expect = 2e-14
Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 14/194 (7%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL-- 157
V +G ++GI+GPNG GK+T +K + G L+P D + G + ++ R+
Sbjct: 26 VPEGKLIGIIGPNGAGKSTLIKTILG-LVPRASGDISIY--------GKDYKDQRTRIGY 76
Query: 158 --KNGEIRPVVKPQYVDLLPKAVKGKVRELLK-KVDEVGKFEEVVKELELENVLDRELHQ 214
+ G + +D++ G++ L + K +V + + ++ + + R++ Q
Sbjct: 77 VPQRGSVDWDFPTSPLDVVLMGRYGRIGLLKRPKKADVEMAKAALTKVGMHDYAKRQISQ 136
Query: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
LSGG+ QRV +A AL + A YF DEP + +D + ++ L +GK VLVV HDL
Sbjct: 137 LSGGQQQRVFLARALCQNADIYFMDEPFAGVDAATERAIMTLLAELKEKGKTVLVVHHDL 196
Query: 275 AVLDYLSDVIHVVY 288
+ D I +++
Sbjct: 197 QTAEDYFDWILLLH 210
>pir||G70022 iron(III) dicitrate transport permease homolog yusV - Bacillus
subtilis >gi|2635790|emb|CAB15283.1| (Z99120) similar to
iron(III) dicitrate transport permease [Bacillus
subtilis]
Length = 275
Score = 83.9 bits (204), Expect = 5e-15
Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 28/199 (14%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------------EWDLTVAYKPQY 411
I KGE+ +G NG GK+T ++ LA + +P G V E +A PQ
Sbjct: 28 IPKGEITVFIGSNGCGKSTLLRSLARLMKPRGGSVLLEGRAIAKLPTKEVAKELAILPQG 87
Query: 412 IKAEYEGTVYELLSK--------IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGEL 463
A TV++L+ + + LK + D+ DR V+ LSGG+
Sbjct: 88 PSAPEGLTVHQLVKQGRYPYQNWLKQWSKEDEEAVERALKATKLEDMADRAVDSLSGGQR 147
Query: 464 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM--- 520
QR IA TL ++ DI LLDEP+ YLD+ ++ + + L EK ++T ++V HD+ +
Sbjct: 148 QRAWIAMTLAQETDIILLDEPTTYLDMTHQIEILDLLFELNEKEDRTIVMVLHDLNLACR 207
Query: 521 ----IDYVSDRLIVFEGEP 535
+ + D+ I EG P
Sbjct: 208 YAHHLVAIKDKRIYAEGRP 226
>dbj|BAB05182.1| (AP001512) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 240
Score = 83.5 bits (203), Expect = 6e-15
Identities = 68/213 (31%), Positives = 105/213 (48%), Gaps = 26/213 (12%)
Query: 343 LVEYPRLVKDYGSFKLEVEPG---EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
++ L K +GS LEV G EI+KG+V+ ++GP+G GK+TF++ L +E PT G V
Sbjct: 1 MINVKDLHKSFGS--LEVLKGITTEIQKGDVVAVIGPSGSGKSTFLRCLNLLEVPTSGHV 58
Query: 400 EWDLTVAYKP---------------QYIKAEYEGTVYELLS----KIDS-SKLNSNFYKT 439
D P Q+ TV E L+ K+ SK +
Sbjct: 59 WIDDEEITHPKTNVGKLRTKIGMVFQHFHLFPHMTVMENLTFAPMKVKGVSKAEAIAKGE 118
Query: 440 ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 499
LL+ +G+++ D LSGG+ QRVAIA L D ++ L DEP++ LD E V
Sbjct: 119 SLLQKVGLLEKRDEYPSRLSGGQKQRVAIARALAMDPEVMLFDEPTSALDPEMVKEVLAV 178
Query: 500 IRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 532
++ L E T ++V H++ V+DR++ +
Sbjct: 179 MKDLAETG-MTMVIVTHEMGFAKEVADRVLFLD 210
>gi|11498996 iron (III) ABC transporter, ATP-binding protein (hemV-3)
[Archaeoglobus fulgidus] >gi|7430360|pir||H69424
probable iron(III) ABC transporter hemV-3 -
Archaeoglobus fulgidus >gi|2649168|gb|AAB89842.1|
(AE001007) iron (III) ABC transporter, ATP-binding
protein (hemV-3) [Archaeoglobus fulgidus]
Length = 405
Score = 83.5 bits (203), Expect = 6e-15
Identities = 58/197 (29%), Positives = 99/197 (49%), Gaps = 26/197 (13%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------LTVAYKPQYIKAEY 416
E+ +GE++ ++GPNG GKTT ++ + G+ +P +G V D A K ++ +
Sbjct: 24 EVGEGELLALLGPNGSGKTTMLRTIFGMLKPLKGVVLLDGREVGSAEEAARKLGFLPQDT 83
Query: 417 EGTVYEL-----------LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQR 465
T ++ LS + K E LK +G+ + DR +LSGGE Q+
Sbjct: 84 PMTNLKVIDVVMLGRTPYLSGLKRPKEEDYRAAMEALKEVGMEKMADRLFSELSGGERQK 143
Query: 466 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM----- 520
V +A + +I LLDEP+A+LD+ ++ + +R +E+ K A+V HD+ +
Sbjct: 144 VMLARVFAQQPEIMLLDEPTAHLDIAAQIEIMEIVRSKVEQG-KAAIVAIHDINLASSFA 202
Query: 521 --IDYVSDRLIVFEGEP 535
I V D ++V+ G P
Sbjct: 203 TKILMVKDGVVVYAGRP 219
Score = 76.5 bits (185), Expect = 8e-13
Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 14/200 (7%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
V +G ++ ++GPNG+GKTT ++ + G L P + G E+ + E +
Sbjct: 25 VGEGELLALLGPNGSGKTTMLRTIFGMLKPL---------KGVVLLDGREVGSAEEAARK 75
Query: 160 GEIRPVVKPQ-YVDLLPKAVKGKVREL--LK--KVDEVGKFEEVVKELELENVLDRELHQ 214
P P + ++ + G+ L LK K ++ E +KE+ +E + DR +
Sbjct: 76 LGFLPQDTPMTNLKVIDVVMLGRTPYLSGLKRPKEEDYRAAMEALKEVGMEKMADRLFSE 135
Query: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
LSGGE Q+V +A ++ DEP+++LDI ++++ ++R +GKA +V HD+
Sbjct: 136 LSGGERQKVMLARVFAQQPEIMLLDEPTAHLDIAAQIEIMEIVRSKVEQGKAAIVAIHDI 195
Query: 275 AVLDYLSDVIHVVYGEPGVY 294
+ + I +V VY
Sbjct: 196 NLASSFATKILMVKDGVVVY 215
>pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf) PAB1875 -
Pyrococcus abyssi (strain Orsay)
>gi|5458167|emb|CAB49656.1| (AJ248285) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 326
Score = 83.5 bits (203), Expect = 6e-15
Identities = 53/188 (28%), Positives = 101/188 (53%), Gaps = 23/188 (12%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLT---------------V 405
EI++GE G+VG +G GKTT + + + EPT+GK+ + D+T +
Sbjct: 36 EIKRGETFGLVGESGCGKTTTGRTILRLIEPTDGKIIFMGKDVTKLKGEELKWFRRKAQI 95
Query: 406 AYKPQYIKAEYEGTVYELLS---KIDSSKLNS-NFYKTELLKPLGIIDLY-DRNVEDLSG 460
++ Y + TV++++ K +++ + LL+ +G+ +++ R + SG
Sbjct: 96 MFQDPYSSLDPRQTVFQIIMEPVKFHGIQVDDPEEFVIRLLESVGLNEMHLYRYPHEFSG 155
Query: 461 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 520
G+ QR+A+A L + +LDEP++ LDV + + ++ L EK+ T L + HD+ +
Sbjct: 156 GQRQRIALARLLALKPEFIVLDEPTSALDVSVQANILNTLKELQEKHGFTYLFISHDLGV 215
Query: 521 IDYVSDRL 528
+ Y+SDR+
Sbjct: 216 VKYMSDRI 223
Score = 74.1 bits (179), Expect = 4e-12
Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 26/203 (12%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS----WDNVIRAFRGNELQNYFE 155
+K G G+VG +G GKTT G+ I L E D + +G EL+ +F
Sbjct: 37 IKRGETFGLVGESGCGKTTT-----GRTILRLIEPTDGKIIFMGKDVTKLKGEELK-WFR 90
Query: 156 RLKNGEIRPVVKPQYVDLLPK-AVKGKVRELLK----KVDEVGKFEEVVKELELENVLDR 210
R + + + + Y L P+ V + E +K +VD+ +F V++ LE + +
Sbjct: 91 R----KAQIMFQDPYSSLDPRQTVFQIIMEPVKFHGIQVDDPEEF--VIRLLESVGLNEM 144
Query: 211 EL----HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GK 265
L H+ SGG+ QR+A+A L K F DEP+S LD+ + + ++ L + G
Sbjct: 145 HLYRYPHEFSGGQRQRIALARLLALKPEFIVLDEPTSALDVSVQANILNTLKELQEKHGF 204
Query: 266 AVLVVEHDLAVLDYLSDVIHVVY 288
L + HDL V+ Y+SD I V+Y
Sbjct: 205 TYLFISHDLGVVKYMSDRIGVMY 227
>emb|CAB95940.1| (AL359989) putative ABC transporter ATP-binding subunit
[Streptomyces coelicolor A3(2)]
Length = 604
Score = 83.5 bits (203), Expect = 6e-15
Identities = 69/199 (34%), Positives = 108/199 (53%), Gaps = 19/199 (9%)
Query: 343 LVEYPRLVKDYGSFKL--EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV- 399
LV + K YG+ L V G + +G+ IG+VG NG GKTT ++MLA +EEP G+V
Sbjct: 5 LVNVENVSKVYGTRALLDGVSLG-VSEGDRIGVVGRNGDGKTTMIRMLARLEEPDTGRVT 63
Query: 400 -EWDLTVAYKPQYIKAEYEGTV-YELLSKIDSSKLNSNFYKTELLKPL-GIIDL------ 450
L + Q+ + E TV +E++ + + N ++L L G +D+
Sbjct: 64 HSGGLRLGVLTQHDSLDPEATVRHEVIGDMADHEWAGNAKVRDVLTGLFGGLDMPGFPQG 123
Query: 451 YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 510
D + LSGGE +R+A+A L+ + D+ +LDEP+ +LDVE ++ HL E+ ++
Sbjct: 124 LDTVIGPLSGGERRRIALAKLLIEEQDLVVLDEPTNHLDVE---GIAWLAGHLRER--RS 178
Query: 511 ALV-VEHDVLMIDYVSDRL 528
ALV V HD +D V R+
Sbjct: 179 ALVCVTHDRWFLDQVCTRM 197
>pir||F64751 probable ABC-type transport protein b0262 - Escherichia coli
>gi|1552831|gb|AAB08683.1| (U70214) hypothetical
[Escherichia coli] >gi|1786457|gb|AAC73365.1| (AE000134)
putative ATP-binding component of a transport system
[Escherichia coli K12]
Length = 352
Score = 83.1 bits (202), Expect = 8e-15
Identities = 64/215 (29%), Positives = 114/215 (52%), Gaps = 30/215 (13%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------------EWDLTVAYK--- 408
I +G+++ ++GP+G GKTT ++++AG+E+P+EG++ + D+ + ++
Sbjct: 33 IPQGQMVTLLGPSGCGKTTILRLVAGLEKPSEGQIFIDGEDVTHRSIQQRDICMVFQSYA 92
Query: 409 --PQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL---YDRNVEDLSGGEL 463
P E G ++L + ++L K + + L ++DL DR V+ +SGG+
Sbjct: 93 LFPHMSLGENVGYGLKMLG-VPRAEL-----KARVKEALAMVDLEGFEDRFVDQISGGQQ 146
Query: 464 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 523
QRVA+A L+ + L DEP + LD R ++ IR L ++ + T+L V HD
Sbjct: 147 QRVALARALILKPKVLLFDEPLSNLDANLRRSMRDKIRELQKQFDITSLYVTHDQSEAFA 206
Query: 524 VSDRLIVF-EGEPGRHGRALPPMGMREGMNRFLAS 557
VSD ++V +G + G P R+ +RF+AS
Sbjct: 207 VSDTVLVMNKGHIMQIGS--PQDLYRQPASRFMAS 239
Score = 71.4 bits (172), Expect = 3e-11
Identities = 72/244 (29%), Positives = 115/244 (46%), Gaps = 25/244 (10%)
Query: 86 RYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE-DNDSWDNVIRA 144
R+G N + + G +V ++GP+G GKTT ++++AG P+ + D D R+
Sbjct: 19 RFGSNTVIDNINLTIPQGQMVTLLGPSGCGKTTILRLVAGLEKPSEGQIFIDGEDVTHRS 78
Query: 145 FRGNEL----QNY--FERLKNGEIRPVVKPQYVDLLPKA-VKGKVRELLKKVDEVGKFEE 197
+ ++ Q+Y F + GE V + +P+A +K +V+E L VD
Sbjct: 79 IQQRDICMVFQSYALFPHMSLGE--NVGYGLKMLGVPRAELKARVKEALAMVD------- 129
Query: 198 VVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI 257
LE DR + Q+SGG+ QRVA+A AL+ K FDEP S LD R + I
Sbjct: 130 ------LEGFEDRFVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRDKI 183
Query: 258 RRLANEGKAV-LVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLK 316
R L + L V HD + +SD + +V + + I S R + F+ ++
Sbjct: 184 RELQKQFDITSLYVTHDQSEAFAVSDTV-LVMNKGHIMQIGSPQDLYRQPASRFMASFMG 242
Query: 317 DENV 320
D N+
Sbjct: 243 DANL 246
>sp|P37009|AFUC_ECOLI PUTATIVE FERRIC TRANSPORT ATP-BINDING PROTEIN AFUC
Length = 348
Score = 83.1 bits (202), Expect = 8e-15
Identities = 64/215 (29%), Positives = 114/215 (52%), Gaps = 30/215 (13%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------------EWDLTVAYK--- 408
I +G+++ ++GP+G GKTT ++++AG+E+P+EG++ + D+ + ++
Sbjct: 29 IPQGQMVTLLGPSGCGKTTILRLVAGLEKPSEGQIFIDGEDVTHRSIQQRDICMVFQSYA 88
Query: 409 --PQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL---YDRNVEDLSGGEL 463
P E G ++L + ++L K + + L ++DL DR V+ +SGG+
Sbjct: 89 LFPHMSLGENVGYGLKMLG-VPRAEL-----KARVKEALAMVDLEGFEDRFVDQISGGQQ 142
Query: 464 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 523
QRVA+A L+ + L DEP + LD R ++ IR L ++ + T+L V HD
Sbjct: 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMRDKIRELQKQFDITSLYVTHDQSEAFA 202
Query: 524 VSDRLIVF-EGEPGRHGRALPPMGMREGMNRFLAS 557
VSD ++V +G + G P R+ +RF+AS
Sbjct: 203 VSDTVLVMNKGHIMQIGS--PQDLYRQPASRFMAS 235
Score = 71.4 bits (172), Expect = 3e-11
Identities = 72/244 (29%), Positives = 115/244 (46%), Gaps = 25/244 (10%)
Query: 86 RYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE-DNDSWDNVIRA 144
R+G N + + G +V ++GP+G GKTT ++++AG P+ + D D R+
Sbjct: 15 RFGSNTVIDNINLTIPQGQMVTLLGPSGCGKTTILRLVAGLEKPSEGQIFIDGEDVTHRS 74
Query: 145 FRGNEL----QNY--FERLKNGEIRPVVKPQYVDLLPKA-VKGKVRELLKKVDEVGKFEE 197
+ ++ Q+Y F + GE V + +P+A +K +V+E L VD
Sbjct: 75 IQQRDICMVFQSYALFPHMSLGE--NVGYGLKMLGVPRAELKARVKEALAMVD------- 125
Query: 198 VVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI 257
LE DR + Q+SGG+ QRVA+A AL+ K FDEP S LD R + I
Sbjct: 126 ------LEGFEDRFVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRDKI 179
Query: 258 RRLANEGKAV-LVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLK 316
R L + L V HD + +SD + +V + + I S R + F+ ++
Sbjct: 180 RELQKQFDITSLYVTHDQSEAFAVSDTV-LVMNKGHIMQIGSPQDLYRQPASRFMASFMG 238
Query: 317 DENV 320
D N+
Sbjct: 239 DANL 242
>dbj|BAB04472.1| (AP001509) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 260
Score = 83.1 bits (202), Expect = 8e-15
Identities = 50/192 (26%), Positives = 96/192 (49%), Gaps = 21/192 (10%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-----LTVAYKPQYIKAEYEGT 419
+++GE +GI+GP+G GK+T + +LA +++P+ G V+ D + + + G
Sbjct: 31 VKRGEFVGIMGPSGSGKSTLLHILAMIDKPSAGTVKIDGVNMKALSRKEVALFRRKRLGF 90
Query: 420 VYELLSKIDSSKLNSNFY----------------KTELLKPLGIIDLYDRNVEDLSGGEL 463
+++ + +D+ + N EL LGI D+ + ++SGG+
Sbjct: 91 IFQDFNLLDTLNVKENILLPLVLESVDKAEMERRLQELTGILGIQDILLKRTYEISGGQQ 150
Query: 464 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 523
QR A A L+ + ++ L DEP+ LD + ++ A+ L + E++ L+V HD Y
Sbjct: 151 QRTAAARALIHNPELILADEPTGNLDSKSATSLMTALEALNREQERSILMVTHDPFAASY 210
Query: 524 VSDRLIVFEGEP 535
S + + +G+P
Sbjct: 211 CSRIVFIRDGKP 222
>gi|7524830 sulfate transport system permease protein [Chlorella vulgaris]
>gi|3023607|sp|P56344|CYSA_CHLVU PROBABLE SULFATE
TRANSPORT ATP-BINDING PROTEIN CYSA
>gi|7442559|pir||T07260 sulfate transport ATP-binding
protein - Chlorella vulgaris chloroplast
>gi|2224423|dbj|BAA57907.1| (AB001684) sulfate transport
system permease protein [Chlorella vulgaris]
Length = 236
Score = 83.1 bits (202), Expect = 8e-15
Identities = 62/199 (31%), Positives = 102/199 (51%), Gaps = 18/199 (9%)
Query: 351 KDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------- 401
K +GSF+ L+ EI+ G ++G++GP+G GK+T +++LAG+E+P G++ W
Sbjct: 10 KRFGSFQALDRVNLEIKNGSLVGLLGPSGSGKSTLLRVLAGLEKPDSGRI-WLEGQDATQ 68
Query: 402 ----DLTVAYKPQYIKAEYEGTVYELLS-KIDSSKLNSNFYK---TELLKPLGIIDLYDR 453
D + + Q TV E ++ ++ K++S K ELLK + + D
Sbjct: 69 MKLQDREIGFVFQNYALFPHLTVSENVAFGLEIQKIDSLLKKKRVNELLKLMQLEKFGDS 128
Query: 454 NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 513
LSGG+ QRVA+A L + + LLDEP A LD + R + +R L K T +
Sbjct: 129 YPNQLSGGQRQRVALARALAMEPKVLLLDEPFAALDAKIRKQLRSWLRELHHKISVTTVF 188
Query: 514 VEHDVLMIDYVSDRLIVFE 532
V HD ++ +++ E
Sbjct: 189 VTHDYSEAMELAQEIVLLE 207
>gi|10956101 ABC transporter subunit PenL [Pediococcus pentosaceus]
>gi|10956124|ref|NP_037576.1| putative ABC transporter
ATP-binding subunit [Pediococcus pentosaceus]
>gi|4587880|gb|AAD25906.1|AF069302_15 (AF069302) ABC
transporter subunit PenL [Pediococcus pentosaceus]
>gi|5091682|gb|AAD39629.1|AF033858_12 (AF033858)
putative ABC transporter ATP-binding subunit
[Pediococcus pentosaceus]
Length = 313
Score = 83.1 bits (202), Expect = 8e-15
Identities = 51/190 (26%), Positives = 101/190 (52%), Gaps = 14/190 (7%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE---WDLTVAYKPQYIKAEYEGTVY 421
+ KG+++ ++GPNG GKTT ++++ + E G + D+ + Q I + +G +Y
Sbjct: 30 LEKGKILALLGPNGAGKTTIIRLITSLIEQDSGVISVFNGDINPSNIRQNISVQNDGNLY 89
Query: 422 ELLSKIDSSKLNSNFYK----------TELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 471
E L+ ++ K+ FY+ +EL I + + V +LS G Q+V I
Sbjct: 90 ENLTIFENLKIWGGFYEIPEDHLEVKISELTSRFEISERLNSKVGELSKGMKQKVLIIRA 149
Query: 472 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR-LIV 530
LL + + +LDEP++ LD +++ + ++++E T ++ H +L ++ ++D LI+
Sbjct: 150 LLTNPKLLILDEPTSGLDPYMIDLLTKILTEYVKRHETTIIMATHQLLGLESIADDVLIL 209
Query: 531 FEGEPGRHGR 540
+GE HG+
Sbjct: 210 NKGEVVVHGK 219
>pir||F72756 probable multiple sugar-binding transport ATP-binding protein
APE0043 - Aeropyrum pernix (strain K1)
>gi|5103431|dbj|BAA78952.1| (AP000058) 381aa long
hypothetical multiple sugar-binding transport
ATP-binding protein [Aeropyrum pernix]
Length = 381
Score = 83.1 bits (202), Expect = 8e-15
Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 19/185 (10%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAY---KPQYIKAEYEG-T 419
I+ GE ++GP+G GKTT ++++AG+E P EG++ D V + K + + ++
Sbjct: 39 IKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILIDGEDVTFKDPKDRNVAMVFQNYA 98
Query: 420 VYELLSKIDSSKLNSNFYKTEL--------------LKPLGIIDLYDRNVEDLSGGELQR 465
+Y +S D+ + + E+ K L I DL DR LSGG+ QR
Sbjct: 99 LYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIEVAKLLRIEDLLDRKPGQLSGGQQQR 158
Query: 466 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 525
VA+A L+R ++L+DEP + LD RLA+ ++ L + + T + V HD ++
Sbjct: 159 VALARALVRRPKVWLMDEPLSNLDALLRLAMRAELKKLQKDLKITTVYVTHDQAEAMSMA 218
Query: 526 DRLIV 530
DR+ V
Sbjct: 219 DRIAV 223
Score = 81.9 bits (199), Expect = 2e-14
Identities = 68/209 (32%), Positives = 108/209 (51%), Gaps = 6/209 (2%)
Query: 81 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 140
E V R+G V + +KDG ++GP+G GKTT ++++AG P+ E D
Sbjct: 20 EGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPD--EGRILIDG 77
Query: 141 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVREL-LKKVDEVGKFEEVV 199
F+ + +N +N + P + D + + + +E+ L K D + EV
Sbjct: 78 EDVTFKDPKDRNVAMVFQNYALYPHMS--VFDNIAFTLHLRRKEMGLTKDDIRRRVIEVA 135
Query: 200 KELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 259
K L +E++LDR+ QLSGG+ QRVA+A AL+R+ + DEP S LD RL + +++
Sbjct: 136 KLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELKK 195
Query: 260 LANEGKAVLV-VEHDLAVLDYLSDVIHVV 287
L + K V V HD A ++D I V+
Sbjct: 196 LQKDLKITTVYVTHDQAEAMSMADRIAVM 224
>gb|AAG20921.1| (AE005158) sn-glycerol-3-phosphate transport system ATP-binding;
UgpC [Halobacterium sp. NRC-1]
Length = 379
Score = 83.1 bits (202), Expect = 8e-15
Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 19/205 (9%)
Query: 369 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------------EWDLTVAYKPQYIKAE 415
E + +VGP+G GK+T ++++AG+E+ T G + + D+ + ++ +
Sbjct: 30 EFLVVVGPSGCGKSTTLRLIAGLEDATAGTIRIGGTDVTDSPPEDRDIAMVFQNYALYPH 89
Query: 416 Y---EGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATL 472
E + + S D S + LGI +L DR + LSGGE QRVAI L
Sbjct: 90 MTAAENMTFGMQSVTDYSSAEIEDRVADAAATLGITELLDRTPDALSGGERQRVAIGRAL 149
Query: 473 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 532
+R+ ++LLDEP + LD + R+ + + L + + T + V HD + DR+ V
Sbjct: 150 VREPSVFLLDEPLSNLDAKLRVHMRAELSKLHRELDTTTVYVTHDQTEAMTLGDRVAVL- 208
Query: 533 GEPGRHGRALPPMGMRE-GMNRFLA 556
G + PP + + N+F+A
Sbjct: 209 -NDGTVQQVAPPQQLYDFPANQFVA 232
>pir||I40452 ABC-type transport system probable ATP binding subunit - Bacillus
subtilis >gi|666983|emb|CAA54726.1| (X77636) putative
ATP binding subunit [Bacillus subtilis]
Length = 247
Score = 82.7 bits (201), Expect = 1e-14
Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 17/217 (7%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFER 156
++ G V+ I+GP+G+GKTT ++ L IPN L D+ S D + + + L+ R
Sbjct: 24 IEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAFDDFSIDFSKKVKQADILKL---R 80
Query: 157 LKNGEIRPVVKP-QYVDLLPKAVKGKVRELLKKVDEVGKFE-EVVKELELENVLDRELHQ 214
K+G + + L ++G V+ + +EV K +++ ++ L++ +D Q
Sbjct: 81 RKSGMVFQAYHLFPHRTALENVMEGPVQVQKRNKEEVRKEAIQLLDKVGLKDKMDLYPFQ 140
Query: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
LSGG+ QRV IA AL + FDEP+S LD +V +VI+ LANEG ++VV H++
Sbjct: 141 LSGGQQQRVGIARALAIQPELMLFDEPTSALDPELVGEVLKVIKDLANEGWTMVVVTHEI 200
Query: 275 AVLDYLSDVIHVVYGEPGVY-------GIFSKPKGTR 304
++D V++ + GV IFS PK R
Sbjct: 201 KFAQEVAD--EVIFIDGGVIVEQGPPEQIFSAPKEER 235
Score = 74.9 bits (181), Expect = 2e-12
Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 25/194 (12%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-DLTVAYKPQYIKAEY------ 416
+I KG+VI I+GP+G GKTT ++ L +E P G++ + D ++ + + +A+
Sbjct: 23 KIEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAFDDFSIDFSKKVKQADILKLRRK 82
Query: 417 EGTVYE--------------LLSKIDSSKLNSNFYKTE---LLKPLGIIDLYDRNVEDLS 459
G V++ + + K N + E LL +G+ D D LS
Sbjct: 83 SGMVFQAYHLFPHRTALENVMEGPVQVQKRNKEEVRKEAIQLLDKVGLKDKMDLYPFQLS 142
Query: 460 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 519
GG+ QRV IA L ++ L DEP++ LD E V + I+ L + T +VV H++
Sbjct: 143 GGQQQRVGIARALAIQPELMLFDEPTSALDPELVGEVLKVIKDLANEG-WTMVVVTHEIK 201
Query: 520 MIDYVSDRLIVFEG 533
V+D +I +G
Sbjct: 202 FAQEVADEVIFIDG 215
>pir||E69812 ferrichrome ABC transporter (ATP-binding p) homolog yfmF - Bacillus
subtilis >gi|2443249|dbj|BAA22320.1| (D86417) YfmF
[Bacillus subtilis] >gi|2633073|emb|CAB12578.1| (Z99108)
similar to ferrichrome ABC transporter (ATP-binding
protein) [Bacillus subtilis]
Length = 266
Score = 82.7 bits (201), Expect = 1e-14
Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 22/193 (11%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------------EWDLTVAYKPQ 410
+I +G++ ++G NG GK+T +K LA + P G V E +A PQ
Sbjct: 25 KIEEGKITALIGANGCGKSTILKSLARLMAPKSGTVLLEGKDIHRQPSKEVAKKLAILPQ 84
Query: 411 YIKAEYEGTVYEL--LSKIDSSKLNSNFYKTE------LLKPLGIIDLYDRNVEDLSGGE 462
+A TV EL + KL S + + L+ G+I+L DR ++ LSGG+
Sbjct: 85 SPQAPEGLTVEELCYFGRHPHKKLLSKHTQEDHDMVEWALEATGMIELKDRTLDALSGGQ 144
Query: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 522
QR I+ L + D+ LLDEP+ YLD+ ++ V ++ L + +T ++V HD+
Sbjct: 145 RQRAWISMALAQGTDLLLLDEPTTYLDISHQIEVLELLKKLNRDHGRTVVMVLHDLNQAA 204
Query: 523 YVSDRLI-VFEGE 534
+D LI V +G+
Sbjct: 205 QYADYLISVLDGK 217
>pir||G69192 ABC transporter (glutamine transport ATP-binding protein) -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2621782|gb|AAB85201.1| (AE000849) ABC transporter
(glutamine transport ATP-binding protein)
[Methanobacterium thermoautotrophicum]
Length = 220
Score = 82.7 bits (201), Expect = 1e-14
Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 20/210 (9%)
Query: 344 VEYPRLVKDYGSFKLEVEPG---EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV- 399
+E L K + S ++ G E+ GE I I+GP+G GK+T + M+ ++ P G +
Sbjct: 4 IEVRDLRKSFDSGRIRALNGVNLEVDGGEFISIMGPSGSGKSTLLNMIGALDVPDSGTIC 63
Query: 400 --EWDLTVAYKPQYIKAEYEGTVYEL------LSKIDSSKL--------NSNFYKTELLK 443
DL+ ++AE G V++L L+ +++ ++ N ELL+
Sbjct: 64 VAGRDLSRERDLSRLRAEEIGFVFQLHNLIPNLTALENVEIPMFAVKHENMEERAMELLE 123
Query: 444 PLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 503
+ + D R +LSGGE QRVAIA L D I L DEP+ LD V R +R L
Sbjct: 124 YVDLADKAHRKPTELSGGERQRVAIARALANDPSIILADEPTGSLDSRTSQRVLRKLREL 183
Query: 504 MEKNEKTALVVEHDVLMIDYVSDRLIVFEG 533
E T +VV H+ + S + + +G
Sbjct: 184 QEDEGVTLVVVTHEPDVAAMASRTIRILDG 213
>pir||C69223 anion permease - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2622017|gb|AAB85418.1| (AE000867) anion
permease [Methanobacterium thermoautotrophicum]
Length = 357
Score = 82.7 bits (201), Expect = 1e-14
Identities = 59/223 (26%), Positives = 109/223 (48%), Gaps = 21/223 (9%)
Query: 342 TLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-- 399
+ ++ L D G F + V+ + +G+ + I+GP G GK+ F++ + G EP G +
Sbjct: 2 SFLDIDNLEIDLGEFVVRVDELHLSRGDYLVIIGPTGSGKSIFLETIMGFFEPISGTISL 61
Query: 400 -----------EWDLTVAYKPQYI--KAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLG 446
E D+++ Y+ + E + L K K N + E+ +G
Sbjct: 62 DGADLTTLPPEERDVSIVYQDHCLFPHMTVEENIAYGLRKQTEMKENIHRQVHEIAAMMG 121
Query: 447 IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 506
I + +R LSGGELQR +IA ++ + + L+DEP + LD ++++ + I + +
Sbjct: 122 IDHVLNRYPGTLSGGELQRASIARAIIVNPRLLLMDEPFSALDQRTKISLRKLIADIRDN 181
Query: 507 NEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 549
E T + V HD+ I ++S+++ V HG+ + MG +E
Sbjct: 182 FETTVIHVTHDLDDIWWLSNKVAVM-----NHGKII-QMGKKE 218
>pir||A72618 probable oligopeptide transport ATP-binding protein APE1402 -
Aeropyrum pernix (strain K1) >gi|5105085|dbj|BAA80399.1|
(AP000061) 347aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 82.7 bits (201), Expect = 1e-14
Identities = 62/233 (26%), Positives = 111/233 (47%), Gaps = 33/233 (14%)
Query: 331 KLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIR----------KGEVIGIVGPNGIG 380
+L +R+ + RE LVE L K + L ++ +G+ +G+VG +G G
Sbjct: 18 RLLQRIFLGRELLVETVGLKKYFPVKSLFFTRAYVKAVDNVTIGIPRGKTLGLVGESGSG 77
Query: 381 KTTFVKMLAGVEEPTEGKVEWD------------------LTVAYKPQYIKAEYEGTVYE 422
KTTF +++ +EEPT G++ +D + ++ Y T++
Sbjct: 78 KTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGLKEFRRRAQIIFQDPYGSLNPRKTIFN 137
Query: 423 LLS---KIDSSKLNS-NFYKTELLKPLGIIDLY-DRNVEDLSGGELQRVAIAATLLRDAD 477
L++ K+ K+ Y LL +G+ + + R + SGG+ QR+AIA L +
Sbjct: 138 LIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETHLYRYPHEFSGGQRQRIAIARVLALKPE 197
Query: 478 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 530
+LDEP++ LDV + + ++ L K T L + HD+ ++ Y+SD + V
Sbjct: 198 FIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAV 250
Score = 73.7 bits (178), Expect = 5e-12
Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 27/215 (12%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS---WDNV-IRAFRGNELQNYFERLK 158
G +G+VG +G+GKTT G++I L E +D + + RG L+ + R +
Sbjct: 65 GKTLGLVGESGSGKTTF-----GRVILRLEEPTGGRIFFDGIDVMKLRGRGLKEFRRRAQ 119
Query: 159 NGEIRPVVKPQYVDLLP-KAVKGKVRELLKKVD-EVGKFEEVVKELEL-----ENVLDRE 211
+ + Y L P K + + E +K +VG +E + L E L R
Sbjct: 120 I-----IFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETHLYRY 174
Query: 212 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVV 270
H+ SGG+ QR+AIA L K F DEP+S LD+ + ++ +++ L + L +
Sbjct: 175 PHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTYLFI 234
Query: 271 EHDLAVLDYLSDVIHVVY-GEPGVYG----IFSKP 300
HDL V+ Y+SD I V+Y G+ +G +F KP
Sbjct: 235 SHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFEKP 269
>pir||B83571 probable ATP-binding component of ABC transporter PA0603 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9946476|gb|AAG03992.1|AE004496_8 (AE004496) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 369
Score = 82.7 bits (201), Expect = 1e-14
Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 22/236 (9%)
Query: 341 ETLVEYPRLVKDYGSFKLEVEPG--EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 398
+ LV + + K Y L V+ +IRKGE + ++GP+G GKTT + MLAG E PT G+
Sbjct: 8 DVLVSFRGVQKSYDGETLIVKDLNLDIRKGEFLTLLGPSGSGKTTSLMMLAGFETPTAGE 67
Query: 399 V-------------EWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL 445
+ + D+ + ++ Y + L + ++ K + + L
Sbjct: 68 ILLAGRSINNVPPHKRDIGMVFQ-NYALFPHMTVAENLAFPLSVRGMSKTDVKERVKRAL 126
Query: 446 GIIDL---YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 502
++ L R LSGG+ QRVA+A L+ + + L+DEP LD + R + I+H
Sbjct: 127 SMVQLDAFAGRYPAQLSGGQQQRVALARALVFEPQLVLMDEPLGALDKQLREHMQMEIKH 186
Query: 503 LMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE-GMNRFLAS 557
L ++ T + V HD +SDR+ VF G + PP + E N F+A+
Sbjct: 187 LHQRLGVTVVYVTHDQGEALTMSDRVAVF--HQGEIQQIEPPRNLYEQPRNTFVAN 240
>gb|AAA23639.1| (M32101) cysA [Escherichia coli]
Length = 365
Score = 82.3 bits (200), Expect = 1e-14
Identities = 61/213 (28%), Positives = 106/213 (49%), Gaps = 24/213 (11%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-----------DLTVAYKPQYI 412
+I G+++ ++GP+G GKTT ++++AG+E T G + + D V + Q+
Sbjct: 24 DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHY 83
Query: 413 KAEYEGTVYELLS----------KIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGE 462
TV++ ++ + +++ + + T+LL+ + + L DR +SGG+
Sbjct: 84 ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV--TKLLEMVQLAHLADRYPAHVSGGQ 141
Query: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 522
QRVA+A L + I LLDEP LD + R + R +R L E+ + T++ V HD
Sbjct: 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAT 201
Query: 523 YVSDRLIVFEGEPGRHGRALPPMGMREGMNRFL 555
V+DR++V A P RE RF+
Sbjct: 202 EVADRVVVMSQGNIEQADA-PDQVWREPATRFV 233
>gb|AAK40417.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 246
Score = 82.3 bits (200), Expect = 1e-14
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 12/191 (6%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
V G + ++GPNG GKTT VKIL+ L P E VI NE ER+
Sbjct: 28 VYKGEIFSLLGPNGAGKTTTVKILSCVLKPTRGEVK-----VIGYKVPNECGKIRERIG- 81
Query: 160 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVD-EVGKFEEVVKELELENVLDRELHQLSGG 218
V+ Y L V+ + +K + + + +E++ L+LE V +++L LSGG
Sbjct: 82 -----VMPQDYQGFLDLTVRENIEYFVKLYNGKETQVDELISLLDLEKVKNQKLRYLSGG 136
Query: 219 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLD 278
++RV IA+A F DEP+ LD + R +I+ + N+G + + H L
Sbjct: 137 YVRRVGIASAFAGSQEILFLDEPTVGLDPKARRGFWEIIKMMKNKGVTIFLTTHYLDEAQ 196
Query: 279 YLSDVIHVVYG 289
LSD + ++YG
Sbjct: 197 KLSDRVAILYG 207
Score = 71.4 bits (172), Expect = 3e-11
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 24/209 (11%)
Query: 343 LVEYPRLVKDYGSFKLEVEPG---EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
+VE L K+Y EV G + KGE+ ++GPNG GKTT VK+L+ V +PT G+V
Sbjct: 5 IVEVKDLYKEYKD--KEVLRGISFTVYKGEIFSLLGPNGAGKTTTVKILSCVLKPTRGEV 62
Query: 400 EWDLTVAYK---------------PQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 444
+ + YK PQ + + TV E + EL+
Sbjct: 63 K---VIGYKVPNECGKIRERIGVMPQDYQGFLDLTVRENIEYFVKLYNGKETQVDELISL 119
Query: 445 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 504
L + + ++ + LSGG ++RV IA+ +I LDEP+ LD + R I+ +M
Sbjct: 120 LDLEKVKNQKLRYLSGGYVRRVGIASAFAGSQEILFLDEPTVGLDPKARRGFWEIIK-MM 178
Query: 505 EKNEKTALVVEHDVLMIDYVSDRLIVFEG 533
+ T + H + +SDR+ + G
Sbjct: 179 KNKGVTIFLTTHYLDEAQKLSDRVAILYG 207
>pir||S75436 hypothetical protein c05019 - Sulfolobus solfataricus
>gi|1707842|emb|CAA69520.1| (Y08257) putative ABC
transporter [Sulfolobus solfataricus]
Length = 246
Score = 82.3 bits (200), Expect = 1e-14
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 12/191 (6%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
V G + ++GPNG GKTT VKIL+ L P E VI NE ER+
Sbjct: 28 VYKGEIFSLLGPNGAGKTTTVKILSCVLKPTRGEVK-----VIGYKVPNECGKIRERIG- 81
Query: 160 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVD-EVGKFEEVVKELELENVLDRELHQLSGG 218
V+ Y L V+ + +K + + + +E++ L+LE V +++L LSGG
Sbjct: 82 -----VMPQDYQGFLDLTVRENIEYFVKLYNGKETQVDELISLLDLEKVKNQKLRYLSGG 136
Query: 219 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLD 278
++RV IA+A F DEP+ LD + R +I+ + N+G + + H L
Sbjct: 137 YVRRVGIASAFAGSQEILFLDEPTVGLDPKARRGFWEIIKMMKNKGVTIFLTTHYLDEAQ 196
Query: 279 YLSDVIHVVYG 289
LSD + ++YG
Sbjct: 197 KLSDRVAILYG 207
Score = 71.4 bits (172), Expect = 3e-11
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 24/209 (11%)
Query: 343 LVEYPRLVKDYGSFKLEVEPG---EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
+VE L K+Y EV G + KGE+ ++GPNG GKTT VK+L+ V +PT G+V
Sbjct: 5 IVEVKDLYKEYKD--KEVLRGISFTVYKGEIFSLLGPNGAGKTTTVKILSCVLKPTRGEV 62
Query: 400 EWDLTVAYK---------------PQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 444
+ + YK PQ + + TV E + EL+
Sbjct: 63 K---VIGYKVPNECGKIRERIGVMPQDYQGFLDLTVRENIEYFVKLYNGKETQVDELISL 119
Query: 445 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 504
L + + ++ + LSGG ++RV IA+ +I LDEP+ LD + R I+ +M
Sbjct: 120 LDLEKVKNQKLRYLSGGYVRRVGIASAFAGSQEILFLDEPTVGLDPKARRGFWEIIK-MM 178
Query: 505 EKNEKTALVVEHDVLMIDYVSDRLIVFEG 533
+ T + H + +SDR+ + G
Sbjct: 179 KNKGVTIFLTTHYLDEAQKLSDRVAILYG 207
>sp|P39456|YCKI_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BINDING PROTEIN YCKI
>gi|7442523|pir||C69761 ABC-type transport protein yckI
- Bacillus subtilis >gi|1805430|dbj|BAA08992.1| (D50453)
homologue of glutamine transport ATP-binding protein
GlnQ of E. coli [Bacillus subtilis]
>gi|2632645|emb|CAB12153.1| (Z99105) similar to
glutamine ABC transporter (ATP-binding protein)
[Bacillus subtilis] >gi|2632660|emb|CAB12167.1| (Z99106)
similar to glutamine ABC transporter (ATP-binding
protein) [Bacillus subtilis]
Length = 247
Score = 82.3 bits (200), Expect = 1e-14
Identities = 70/218 (32%), Positives = 112/218 (51%), Gaps = 19/218 (8%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
++ G V+ I+GP+G+GKTT ++ L IPN E ++D+ F Q +L+
Sbjct: 24 IEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGEL--AFDDFSIDFSKKVKQADILKLRR 81
Query: 160 GEIRPVVKPQYV-----DLLPKAVKGKVRELLKKVDEVGKFE-EVVKELELENVLDRELH 213
P+V Y L ++G V+ + +EV K +++ ++ L++ +D
Sbjct: 82 KS--PMVFQAYHLFPHRTALENVMEGPVQVQKRNKEEVRKEAIQLLDKVGLKDKMDLYPF 139
Query: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
QLSGG+ QRV IA AL + FDEP+S LD +V +VI+ LANEG ++VV H+
Sbjct: 140 QLSGGQQQRVGIARALAIQPELMLFDEPTSALDPELVGEVLKVIKDLANEGWTMVVVTHE 199
Query: 274 LAVLDYLSDVIHVVYGEPGVY-------GIFSKPKGTR 304
+ ++D V++ + GV IFS PK R
Sbjct: 200 IKFAQEVAD--EVIFIDGGVIVEQGPPEQIFSAPKEER 235
>pir||E70952 probable sugC protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2695824|emb|CAA15894.1| (AL021006) sugC
[Mycobacterium tuberculosis]
Length = 393
Score = 82.3 bits (200), Expect = 1e-14
Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 27/235 (11%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
+ DG + +VGP+G GKTT + ++AG ED S + I R NE + K+
Sbjct: 27 IADGEFLILVGPSGCGKTTTLNMIAG------LEDISSGELRIAGERVNE-----KAPKD 75
Query: 160 GEIRPVVKPQYVDLLPKAVKGKVR-----ELLKKVDEVGKFEEVVKELELENVLDRELHQ 214
+I V + Y V+ + ++K D K E K L+L N+LDR+ Q
Sbjct: 76 RDIAMVFQ-SYALYPHMTVRQNIAFPLTLAKMRKADIAQKVSETAKILDLTNLLDRKPSQ 134
Query: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLD----IRQRLKVARVIRRLANEGKAVLVV 270
LSGG+ QRVA+ A++R + DEP S LD ++ R ++A++ RRL G + V
Sbjct: 135 LSGGQRQRVAMGRAIVRHPKAFLMDEPLSNLDAKLRVQMRGEIAQLQRRL---GTTTVYV 191
Query: 271 EHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGT-RNGINEFLQGYLKDENVRFRP 324
HD L D + V+YG G+ P+ N F+ G++ + F P
Sbjct: 192 THDQTEAMTLGDRVVVMYG--GIAQQIGTPEELYERPANLFVAGFIGSPAMNFFP 244
>pir||E75122 hypothetical protein PAB1845 - Pyrococcus abyssi (strain Orsay)
>gi|5458205|emb|CAB49694.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 305
Score = 82.3 bits (200), Expect = 1e-14
Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 19/210 (9%)
Query: 343 LVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE- 400
++E L K YG FK ++ E+ KG + G +GPNG GKTT + + G+ P G V
Sbjct: 3 VIEIENLTKSYGKFKAVDNLSLEVEKGIIFGFLGPNGAGKTTTILSMLGIIIPDSGSVRL 62
Query: 401 --WDL---TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKT----------ELLKPL 445
+D+ + K + T+YE L+ + ++FY ELLK +
Sbjct: 63 LGYDIFKEPIKAKERLGFLPENATIYEELTAWRNLDFFASFYNIPKQEKEKRIEELLKLV 122
Query: 446 GIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 505
G+ D+ R V+ S G QR+ +A L+ D ++ +LDEP++ LD + V I +
Sbjct: 123 GLWDVRYRKVKSFSKGMKQRLLLAQALINDPELLILDEPTSGLDPQGARLVKDIILE-QK 181
Query: 506 KNEKTALVVEHDVLMIDYVSDRL-IVFEGE 534
K KT H + ++ ++D++ I+ +G+
Sbjct: 182 KQGKTVFFSSHILSEVEELADKVGIIVKGK 211
>pir||C75077 iron (iii) abc transporter, ATP-binding protein (hemv-1) PAB0678 -
Pyrococcus abyssi (strain Orsay)
>gi|5458432|emb|CAB49920.1| (AJ248286) iron (III) ABC
transporter, ATP-binding protein (hemV-1) [Pyrococcus
abyssi]
Length = 257
Score = 82.3 bits (200), Expect = 1e-14
Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE-DNDSWDNVIRAFRGNELQNYFERLK 158
V +G + I+GPNG GKTT ++ +AG L C+ D + IR EL +
Sbjct: 30 VGEGEFLVILGPNGAGKTTLLRCIAGIL---KCKGDVKVFGKSIRDMNRLELAKLLAYVP 86
Query: 159 NGEIRPVVKPQYVDLLPKAVKGK--VRELLKKVDEVGKFEEVVKELELENVLDRELHQLS 216
V+P ++ + + G+ L + +++ +K L +E DR + LS
Sbjct: 87 QR-----VEPGFLRVFDFVLLGRRPYMGLSPRREDLEAVRRALKLLRVEEFEDRVMKTLS 141
Query: 217 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAV 276
GGELQ+VAIA A+ ++ DEP++ LD + ++ V R+I+ L EGK V+ V HDL +
Sbjct: 142 GGELQKVAIARAIAQETPVILLDEPTNNLDPKSQIDVMRIIKDLIGEGKTVITVMHDLTL 201
Score = 77.6 bits (188), Expect = 4e-13
Identities = 60/189 (31%), Positives = 100/189 (52%), Gaps = 19/189 (10%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGV-----EEPTEGKVEWDLT-------VAYKPQY 411
++ +GE + I+GPNG GKTT ++ +AG+ + GK D+ +AY PQ
Sbjct: 29 DVGEGEFLVILGPNGAGKTTLLRCIAGILKCKGDVKVFGKSIRDMNRLELAKLLAYVPQR 88
Query: 412 IKAEYEGTV-YELLSKIDSSKLNSNFYKTEL----LKPLGIIDLYDRNVEDLSGGELQRV 466
++ + + LL + L+ E LK L + + DR ++ LSGGELQ+V
Sbjct: 89 VEPGFLRVFDFVLLGRRPYMGLSPRREDLEAVRRALKLLRVEEFEDRVMKTLSGGELQKV 148
Query: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVS 525
AIA + ++ + LLDEP+ LD + ++ V R I+ L+ + KT + V HD+ L + +
Sbjct: 149 AIARAIAQETPVILLDEPTNNLDPKSQIDVMRIIKDLIGEG-KTVITVMHDLTLALRFGE 207
Query: 526 DRLIVFEGE 534
L + +GE
Sbjct: 208 KFLFLKDGE 216
>emb|CAB65650.1| (AJ252160) putative ABC-transporter ATP-binding protein
[Alicyclobacillus acidocaldarius]
Length = 393
Score = 82.3 bits (200), Expect = 1e-14
Identities = 61/195 (31%), Positives = 103/195 (52%), Gaps = 22/195 (11%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------DL-----TVAYKPQY 411
+IR+GE++G++GP+G GKTT ++++AG+E PT+G V W DL V Q
Sbjct: 25 QIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV-WIGGKRVTDLPPQKRNVGLVFQN 83
Query: 412 IKAEYEGTVYELLS------KIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQR 465
TVY+ +S ++ ++++ ELL+ + + +R +LSGG+ QR
Sbjct: 84 YALFQHMTVYDNVSFGLREKRVPKDEMDARV--RELLRFMRLESYANRFPHELSGGQQQR 141
Query: 466 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 525
VA+A L + L DEP A +D + R + +R + ++ T++ V HD V+
Sbjct: 142 VALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA 201
Query: 526 DR-LIVFEGEPGRHG 539
DR L++ EG + G
Sbjct: 202 DRVLVLHEGNVEQFG 216
Score = 71.4 bits (172), Expect = 3e-11
Identities = 59/229 (25%), Positives = 116/229 (49%), Gaps = 23/229 (10%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
+++G +VG++GP+G+GKTT ++++AG P D W G + + + +N
Sbjct: 26 IREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVW------IGGKRVTDLPPQKRN 76
Query: 160 GEI--RPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSG 217
+ + Q++ + G + + K + + E+++ + LE+ +R H+LSG
Sbjct: 77 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSG 136
Query: 218 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHDLAV 276
G+ QRVA+A AL + FDEP + +D + R ++ +R++ +E G + V HD
Sbjct: 137 GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEE 196
Query: 277 LDYLSDVIHVVY-GEPGVYG----IFSKPKGTRNGINEFLQGYLKDENV 320
++D + V++ G +G ++ KP GT F+ ++ + NV
Sbjct: 197 ALEVADRVLVLHEGNVEQFGTPEEVYEKP-GTL-----FVASFIGESNV 239
>emb|CAB71212.1| (AL138538) putative ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 319
Score = 82.3 bits (200), Expect = 1e-14
Identities = 63/236 (26%), Positives = 101/236 (42%), Gaps = 30/236 (12%)
Query: 328 RFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGE-----IRKGEVIGIVGPNGIGKT 382
R T +R + L+ RLV+ + + +EV+ + +R+GE++ +VG +G GK+
Sbjct: 13 RATASRDRPAYGHDALITCDRLVRIFSADGVEVQALQGLDLLVREGELMALVGASGSGKS 72
Query: 383 TFVKMLAGVEEPTEGKVE-------------------------WDLTVAYKPQYIKAEYE 417
T + +LAG++ PT G W T Y+ A
Sbjct: 73 TLMNILAGLDTPTAGAARVAGRDLLAMTAKDRLAYRRTVVGFVWQQTSRNLMPYLTAAQN 132
Query: 418 GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDAD 477
T+ LS + ELL +G+ D DR + +SGG+ QRVAIA L +
Sbjct: 133 VTLPMQLSGTGGRRAARAERALELLDLMGVADCRDRRPQQMSGGQQQRVAIAVALAGNPS 192
Query: 478 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 533
+ L DEP+ LD + A R E T ++V HD + V + + +G
Sbjct: 193 VLLADEPTGELDSHTAEQIFAAFRTANEHLGTTVVIVTHDQAVAGEVRRTVAIRDG 248
>pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC1095 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655564|gb|AAF94254.1| (AE004190) oligopeptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 336
Score = 82.3 bits (200), Expect = 1e-14
Identities = 60/205 (29%), Positives = 105/205 (50%), Gaps = 32/205 (15%)
Query: 102 DGMVVGIVGPNGTGKTTAVKILAGQL------IPNLCEDNDSWDNVIRAFRGNELQNYFE 155
+G +G+VG +G GK+T + + G + + L +D V R ++Q F+
Sbjct: 52 EGETLGVVGESGCGKSTFARAIIGLVQATHGEVVWLGQDLTRMQEVKRRATRKQIQMIFQ 111
Query: 156 --------RLKNGEIRPVVKPQ---YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELEL 204
R+ G+I + +P Y +L + VK +V+E++ KV L
Sbjct: 112 DPLASLNPRMTVGDI--IAEPLQTFYPELSKQEVKDRVKEMMAKVGL------------L 157
Query: 205 ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE- 263
NV++R H+ SGG+ QR+ IA AL+ K DEP S LD+ + +V +++ L E
Sbjct: 158 PNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKEL 217
Query: 264 GKAVLVVEHDLAVLDYLSDVIHVVY 288
G +++ + HDL+V+ ++SD + V+Y
Sbjct: 218 GLSLVFIAHDLSVVKHISDRVLVMY 242
Score = 74.9 bits (181), Expect = 2e-12
Identities = 49/192 (25%), Positives = 96/192 (49%), Gaps = 31/192 (16%)
Query: 367 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLTVAYKPQYIKAEYEGTVYEL 423
+GE +G+VG +G GK+TF + + G+ + T G+V W DLT + Q +K ++
Sbjct: 52 EGETLGVVGESGCGKSTFARAIIGLVQATHGEVVWLGQDLT---RMQEVKRRATRKQIQM 108
Query: 424 LSKIDSSKLN-------------SNFYKT-----------ELLKPLGII-DLYDRNVEDL 458
+ + + LN FY E++ +G++ ++ +R +
Sbjct: 109 IFQDPLASLNPRMTVGDIIAEPLQTFYPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEF 168
Query: 459 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 518
SGG+ QR+ IA L+ + + DEP + LDV + V ++ L ++ + + + HD+
Sbjct: 169 SGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDL 228
Query: 519 LMIDYVSDRLIV 530
++ ++SDR++V
Sbjct: 229 SVVKHISDRVLV 240
>pir||E82120 zinc ABC transporter, ATP-binding protein VC2082 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656630|gb|AAF95228.1| (AE004282) zinc ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 262
Score = 82.3 bits (200), Expect = 1e-14
Identities = 54/175 (30%), Positives = 92/175 (51%), Gaps = 13/175 (7%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV--EWDLTVAYKPQYIKAE--YEGTV 420
+ KG + ++GPNG GK+T VK++ G++ + GK+ + + + Y PQ +K TV
Sbjct: 27 LTKGNITTLIGPNGAGKSTLVKVILGLQSLSSGKIIRQSGIRIGYVPQKLKLNDTLPLTV 86
Query: 421 YELLSKIDSSKLNSNFYKTELLKPLGIID---LYDRNVEDLSGGELQRVAIAATLLRDAD 477
L KL F EL + L ++ L ++ LSGGE QRV +A LL+ D
Sbjct: 87 NRFL------KLAGRFSTQELSEALRLVGGEHLQSSDMHKLSGGETQRVLLARALLQRPD 140
Query: 478 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 532
+ +LDEP+ +DV+ ++ + I L + L+V HD+ ++ +D +I +
Sbjct: 141 LLVLDEPAQGVDVQGQIDLYDLIHTLRNRFGCAVLMVSHDLHLVMAKTDEVICLQ 195
Score = 73.4 bits (177), Expect = 7e-12
Identities = 55/190 (28%), Positives = 97/190 (50%), Gaps = 23/190 (12%)
Query: 96 RLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFE 155
RL + K G + ++GPNG GK+T VK++ G + S +IR G + +
Sbjct: 24 RLTLTK-GNITTLIGPNGAGKSTLVKVILGL-------QSLSSGKIIRQ-SGIRIGYVPQ 74
Query: 156 RLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQL 215
+LK + P+ +++ L + ++ E L+ V E++ ++H+L
Sbjct: 75 KLKLNDTLPLTVNRFLKLAGRFSTQELSEALRLVGG-------------EHLQSSDMHKL 121
Query: 216 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHDL 274
SGGE QRV +A ALL++ DEP+ +D++ ++ + +I L N G AVL+V HDL
Sbjct: 122 SGGETQRVLLARALLQRPDLLVLDEPAQGVDVQGQIDLYDLIHTLRNRFGCAVLMVSHDL 181
Query: 275 AVLDYLSDVI 284
++ +D +
Sbjct: 182 HLVMAKTDEV 191
>dbj|BAB04009.1| (AP001508) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 301
Score = 82.3 bits (200), Expect = 1e-14
Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 23/204 (11%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV--------EWDLTVAYKPQYIKAE 415
++ GE +G++GPNG GKTT +KM+ + +PT G + E + Y PQY
Sbjct: 24 DLLSGECVGLIGPNGAGKTTLIKMITNILDPTRGDILLNGKRISEMKREIGYLPQYPDFY 83
Query: 416 YEGTVYEL------LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIA 469
T E LS I KL + E+L +G+ + V SGG QR+ IA
Sbjct: 84 QWMTASETLLFMGQLSGISKKKLTKSI--PEILSKVGLRGEENSKVSTFSGGMKQRLGIA 141
Query: 470 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 529
LL ++DEP + LD R V I + K + T L+ H + + + +RL+
Sbjct: 142 QALLHKPSFIVMDEPVSALDPIGRREVLNIIEEI--KKDSTILLSTHILADAEEICERLV 199
Query: 530 VFEGEPGRHGRALPPMGMREGMNR 553
+ ++G + M E +NR
Sbjct: 200 MI-----KNGEKIEDTTMMELLNR 218
>dbj|BAB06933.1| (AP001518) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 318
Score = 82.3 bits (200), Expect = 1e-14
Identities = 59/208 (28%), Positives = 96/208 (45%), Gaps = 17/208 (8%)
Query: 341 ETLVEYPRLVKDYGS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
E +++ + K Y + ++ IRKGE+ G++GPNG GKTT + M+ G+ EPT G V
Sbjct: 3 EAIIKLNEITKRYDDHYAVDHLSLSIRKGEIFGLLGPNGAGKTTSILMMLGLSEPTSGTV 62
Query: 400 ------------EWDLTVAYKPQYIKAEYEGTVYELLSKIDS----SKLNSNFYKTELLK 443
E V Y P + + T E L S K+ + LL+
Sbjct: 63 QVAGIDSTKYPIEVKRKVGYLPDNVGFYPDMTGMENLLYTASLNGIQKIEAIERANTLLE 122
Query: 444 PLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 503
+G+ + + S G QR+ +A L++ +I +LDEP+ +D E IR+L
Sbjct: 123 KVGLTEAAKKKTGQYSRGMKQRLGLADVLMKGPEIIILDEPTLGIDPEGVRDFLHLIRNL 182
Query: 504 MEKNEKTALVVEHDVLMIDYVSDRLIVF 531
+ T L+ H + + V DR+ +F
Sbjct: 183 NQNENLTVLLCSHHLHQVQQVCDRVGIF 210
>gb|AAK40988.1| ABC transporter, ATP binding protein. [Sulfolobus solfataricus]
Length = 246
Score = 81.9 bits (199), Expect = 2e-14
Identities = 66/228 (28%), Positives = 112/228 (48%), Gaps = 28/228 (12%)
Query: 329 FTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPG-----EIRKGEVIGIVGPNGIGKTT 383
F + + RVD + L++ L K Y + +E ++ KGE + I GP+G GKTT
Sbjct: 5 FLEGANRVDYMTDILIDAMDLKKVYKTKNIEYVALRGVTLKVNKGEFLVIAGPSGSGKTT 64
Query: 384 FVKMLAGVEEPTEGKV----------EWDLTVAYKPQYIKAEYEG-------TVYE---- 422
+ +L ++ P+ GK+ + D ++ +YI ++ TV E
Sbjct: 65 LLDLLGLLDSPSAGKIIIDGIDVTNFDEDERAIFRRRYIGFVFQSYNLITYLTVLENVEL 124
Query: 423 LLSKIDSSKLNSNFYKTELLKPL-GIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLL 481
L+ I E+L + G+++L ++ +LSGG+ QRVAIA L D I L
Sbjct: 125 ALAAIGIPVWKRREKAEEILSMIPGMLELKNKKPNELSGGQQQRVAIARALANDPKILLA 184
Query: 482 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 529
DEP+A LD + A+ ++ L E+ + T ++ HD M+ Y +DR++
Sbjct: 185 DEPTANLDSKTGEAIVELMKKLNEEKKVTIIMATHDPDMMRY-ADRIV 231
>emb|CAA29254.1| (X05810) fhuC product (AA 1-265) [Escherichia coli]
Length = 265
Score = 81.9 bits (199), Expect = 2e-14
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 33/193 (17%)
Query: 368 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT-------------VAYKPQYIKA 414
G+V G++G NG GK+T +KML + P+EG++ D VAY PQ +
Sbjct: 37 GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPP 96
Query: 415 EYEGTVYELLS--------------KIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSG 460
TV EL++ D K+ E + +G+ L R V+ LSG
Sbjct: 97 AEGMTVRELVAIGRYPWHGALGRFGAADREKVE------EAISLVGLKPLAHRLVDSLSG 150
Query: 461 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 520
GE QR IA + +D+ LLDEP++ LD+ ++ V + L ++ T + V HD+ M
Sbjct: 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLSLVHRLSQERGLTVIAVLHDINM 210
Query: 521 IDYVSDRLIVFEG 533
D L+ G
Sbjct: 211 AARYCDYLVALRG 223
>gb|AAB61769.1| (M12486) fhuC [Escherichia coli] >gi|473810|dbj|BAA05599.1|
(D26562) 'ferrichrome-iron transport protein fhuC'
[Escherichia coli]
Length = 265
Score = 81.9 bits (199), Expect = 2e-14
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 33/193 (17%)
Query: 368 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT-------------VAYKPQYIKA 414
G+V G++G NG GK+T +KML + P+EG++ D VAY PQ +
Sbjct: 37 GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPP 96
Query: 415 EYEGTVYELLS--------------KIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSG 460
TV EL++ D K+ E + +G+ L R V+ LSG
Sbjct: 97 AEGMTVRELVAIGRYPWHGALGRFGAADREKVE------EAISLVGLKPLAHRLVDSLSG 150
Query: 461 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 520
GE QR IA + +D+ LLDEP++ LD+ ++ V + L ++ T + V HD+ M
Sbjct: 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLSLVHRLSQERGLTVIAVLHDINM 210
Query: 521 IDYVSDRLIVFEG 533
D L+ G
Sbjct: 211 AARYCDYLVALRG 223
>sp|P54537|YQIZ_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BINDING PROTEIN IN
BMRU-ANSR INTERGENIC REGION >gi|7442518|pir||H69962
ABC-type transport protein yqiZ - Bacillus subtilis
>gi|1303951|dbj|BAA12606.1| (D84432) YqiZ [Bacillus
subtilis] >gi|2634830|emb|CAB14327.1| (Z99116) similar
to amino acid ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 240
Score = 81.9 bits (199), Expect = 2e-14
Identities = 59/211 (27%), Positives = 104/211 (48%), Gaps = 22/211 (10%)
Query: 343 LVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW 401
+++ +L K +G + L+ I +GEV+ ++GP+G GK+TF++ L +E+P G +
Sbjct: 1 MIKVEKLSKSFGKHEVLKNISTTIAEGEVVAVIGPSGSGKSTFLRCLNLLEKPNGGTITI 60
Query: 402 DLTVAYKPQYI--------------------KAEYEGTVYELLSKIDSSKLNSNFYKTEL 441
T KP+ K E +Y ++ SK + +L
Sbjct: 61 KDTEITKPKTNTLKVRENIGMVFQHFHLFPHKTVLENIMYAPVNVKKESKQAAQEKAEDL 120
Query: 442 LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 501
L+ +G+ + + LSGG+ QRVAIA L + DI L DEP++ LD E V + ++
Sbjct: 121 LRKVGLFEKRNDYPNRLSGGQKQRVAIARALAMNPDIMLFDEPTSALDPEMVKEVLQVMK 180
Query: 502 HLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 532
L+E T ++V H++ V+DR++ +
Sbjct: 181 ELVETG-MTMVIVTHEMGFAKEVADRVLFMD 210
>sp|P07821|FHUC_ECOLI FERRICHROME TRANSPORT ATP-BINDING PROTEIN FHUC
>gi|7428824|pir||QRECFH ferrichrome transport
ATP-binding protein fhuC - Escherichia coli
>gi|1552729|gb|AAB08581.1| (U70214) ferrichrome-iron
transport protein FhuC [Escherichia coli]
>gi|1786345|gb|AAC73262.1| (AE000124) ATP-binding
component of hydroxymate-dependent iron transport
[Escherichia coli K12]
Length = 265
Score = 81.9 bits (199), Expect = 2e-14
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 33/193 (17%)
Query: 368 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT-------------VAYKPQYIKA 414
G+V G++G NG GK+T +KML + P+EG++ D VAY PQ +
Sbjct: 37 GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPP 96
Query: 415 EYEGTVYELLS--------------KIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSG 460
TV EL++ D K+ E + +G+ L R V+ LSG
Sbjct: 97 AEGMTVRELVAIGRYPWHGALGRFGAADREKVE------EAISLVGLKPLAHRLVDSLSG 150
Query: 461 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 520
GE QR IA + +D+ LLDEP++ LD+ ++ V + L ++ T + V HD+ M
Sbjct: 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLSLVHRLSQERGLTVIAVLHDINM 210
Query: 521 IDYVSDRLIVFEG 533
D L+ G
Sbjct: 211 AARYCDYLVALRG 223
>pir||C71237 probable transport-ATP binding protein - Pyrococcus horikoshii
>gi|3256543|dbj|BAA29226.1| (AP000001) 345aa long
hypothetical transport-ATP binding protein [Pyrococcus
horikoshii]
Length = 345
Score = 81.9 bits (199), Expect = 2e-14
Identities = 61/191 (31%), Positives = 97/191 (49%), Gaps = 19/191 (9%)
Query: 343 LVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW- 401
+++ + KDY FKL ++R+GE I+GP+G GKT ++++AG+ P G++
Sbjct: 1 MLKVESISKDYREFKLREISFDVREGEHFIILGPSGSGKTVLLEIIAGIISPDRGRILLR 60
Query: 402 --DLT--------VAYKPQYIKAEYEGTVYE------LLSKIDSSKLNSNFYKTELLKPL 445
D+T +Y PQ TV++ L KI ++ E+ + L
Sbjct: 61 GEDITGLPPEKRNFSYIPQNYALFPHMTVFDNIAFGLKLRKIPRKEVARKV--REVAESL 118
Query: 446 GIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 505
GI L R LSGGE QRVAIA L+ ++ L+DEP A LDV+ + + R ++ +
Sbjct: 119 GIDHLLHRKPRTLSGGEQQRVAIARALVVKPELLLMDEPFANLDVQTKSKLIREMKRWRK 178
Query: 506 KNEKTALVVEH 516
+ TA+ V H
Sbjct: 179 EFGFTAIHVTH 189
Score = 76.9 bits (186), Expect = 6e-13
Identities = 80/304 (26%), Positives = 136/304 (44%), Gaps = 40/304 (13%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
V++G I+GP+G+GKT ++I+AG + P D RG ++ +N
Sbjct: 23 VREGEHFIILGPSGSGKTVLLEIIAGIISP---------DRGRILLRGEDITGLPPEKRN 73
Query: 160 GEIRP---VVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLS 216
P + P A K+R++ +K + K EV + L ++++L R+ LS
Sbjct: 74 FSYIPQNYALFPHMTVFDNIAFGLKLRKIPRK-EVARKVREVAESLGIDHLLHRKPRTLS 132
Query: 217 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHDLA 275
GGE QRVAIA AL+ K DEP + LD++ + K+ R ++R E G + V H
Sbjct: 133 GGEQQRVAIARALVVKPELLLMDEPFANLDVQTKSKLIREMKRWRKEFGFTAIHVTHSFE 192
Query: 276 VLDYLSDVIHV-----VYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFT 330
L D + + + V +FSKPK +E + +L EN+ R
Sbjct: 193 EALSLGDRVGIMLRGRLVQVGDVRDVFSKPK------SEEVARFLGFENIIEGVANGRIL 246
Query: 331 KLSE-RVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLA 389
K+ + R+++ RE +G ++ + P +I I + G + F +
Sbjct: 247 KVGDLRIELPREV----------WGKVRVGIRPEDI----TIFMEGVKTSARNVFKARVE 292
Query: 390 GVEE 393
G+E+
Sbjct: 293 GIED 296
>pir||C71081 probable resistance ATP-binding protein - Pyrococcus horikoshii
>gi|3257326|dbj|BAA30009.1| (AP000004) 324aa long
hypothetical resistance ATP-binding protein [Pyrococcus
horikoshii]
Length = 324
Score = 81.9 bits (199), Expect = 2e-14
Identities = 62/222 (27%), Positives = 107/222 (47%), Gaps = 44/222 (19%)
Query: 349 LVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK--------- 398
LVK YG F+ + ++R+GE+ +GPNG GKTT V ML + +PT G+
Sbjct: 12 LVKKYGDFEAVRGISFKVRRGEIFAFLGPNGAGKTTTVHMLTTLLKPTSGRAIVAGHDVV 71
Query: 399 ------------------VEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE 440
V+ +LT A++ YI G +Y L + K+ E
Sbjct: 72 KESREVRKKIGVVFQDPSVDRELT-AWENMYI----HGRIYGLKGQELKKKIE------E 120
Query: 441 LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 500
LLK + + + DR V+ SGG +R+ IA L+ + ++ LDEP+ LD + R + I
Sbjct: 121 LLKFVELWEFKDRQVKYFSGGMQRRLEIARALIHEPEVLFLDEPTIGLDPQTRAHIWEYI 180
Query: 501 RHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRAL 542
+ + E+++ T + H + + ++DR+ + + HG+ +
Sbjct: 181 KTMKEEHDMTIFLTTHYMDEAEQLADRIAIID-----HGKII 217
>emb|CAB57615.1| (Y18930) ABC transporter/ATP-binding protein [Sulfolobus
solfataricus]
Length = 246
Score = 81.9 bits (199), Expect = 2e-14
Identities = 66/228 (28%), Positives = 112/228 (48%), Gaps = 28/228 (12%)
Query: 329 FTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPG-----EIRKGEVIGIVGPNGIGKTT 383
F + + RVD + L++ L K Y + +E ++ KGE + I GP+G GKTT
Sbjct: 5 FLEGANRVDYMTDILIDAMDLKKVYKTKNIEYVALRGVTLKVNKGEFLVIAGPSGSGKTT 64
Query: 384 FVKMLAGVEEPTEGKV----------EWDLTVAYKPQYIKAEYEG-------TVYE---- 422
+ +L ++ P+ GK+ + D ++ +YI ++ TV E
Sbjct: 65 LLDLLGLLDSPSAGKIIIDGIDVTNFDEDERAIFRRRYIGFVFQSYNLITYLTVLENVEL 124
Query: 423 LLSKIDSSKLNSNFYKTELLKPL-GIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLL 481
L+ I E+L + G+++L ++ +LSGG+ QRVAIA L D I L
Sbjct: 125 ALAAIGIPVWKRREKAEEILSMIPGMLELKNKKPNELSGGQQQRVAIARALANDPKILLA 184
Query: 482 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 529
DEP+A LD + A+ ++ L E+ + T ++ HD M+ Y +DR++
Sbjct: 185 DEPTANLDSKTGEAIVELMKKLNEEKKVTIIMATHDPDMMRY-ADRIV 231
>pir||H81971 probable ABC transporter ATP-binding protein NMA0535 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7379275|emb|CAB83829.1| (AL162753) putative ABC
transporter ATP-binding protein [Neisseria meningitidis
Z2491]
Length = 621
Score = 81.9 bits (199), Expect = 2e-14
Identities = 65/208 (31%), Positives = 108/208 (51%), Gaps = 28/208 (13%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVA-YKPQYIKAE------ 415
+IR+GE + +VG +G GK+T V +L EP+ G + D + +A K ++A+
Sbjct: 399 DIRQGERVALVGRSGSGKSTVVNLLPRFVEPSAGNICIDGIDIADIKLDCLRAQFALVSQ 458
Query: 416 ----YEGTVYELL---------SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGE 462
++ T++E + +++ S+ +N PLG+ N +LSGG+
Sbjct: 459 DVFLFDDTLFENVRYSRPDAGEAEVLSALQAANLQSLIDASPLGLHQPIGSNGSNLSGGQ 518
Query: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 522
QRVAIA +L+DA I LLDE ++ LD E V +A+ LME +T ++V H + I+
Sbjct: 519 RQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLME--NRTGIIVAHRLTTIE 576
Query: 523 YVSDRLIVFEG----EPGRHGRALPPMG 546
+DR+IV + E G H + + G
Sbjct: 577 -GADRIIVMDDGKIIEQGTHEQLMSQNG 603
>pir||A83621 probable ATP-binding component of ABC transporter PA0206 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9946041|gb|AAG03595.1|AE004458_10 (AE004458)
probable ATP-binding component of ABC transporter
[Pseudomonas aeruginosa]
Length = 370
Score = 81.9 bits (199), Expect = 2e-14
Identities = 67/214 (31%), Positives = 105/214 (48%), Gaps = 24/214 (11%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE-WDLTVAYKP-----------QY 411
+IR E ++GP+G GKTT ++M+AG E PTEG++ + +A +P Y
Sbjct: 37 DIRDNEFFTLLGPSGCGKTTLLRMIAGFEFPTEGEILLYGENIAARPPFERPVNTVFQHY 96
Query: 412 IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP----LGIIDLY---DRNVEDLSGGELQ 464
+ L ++S L + K E+ + L ++ + DR LSGG+ Q
Sbjct: 97 ALFPHMSIAENLAFGLESRPLGRSLGKAEIAERVREMLALVQMERFADRRPGQLSGGQQQ 156
Query: 465 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 524
RVA+A L + LLDEP + LD++ R A+ ++ + K T + V HD +
Sbjct: 157 RVALARALAPQPRVLLLDEPLSALDLKLRQAMREELKAIQAKTGITFIFVTHDQEEALTM 216
Query: 525 SDRLIVF-EGEPGRHGRALPPMGMREGM-NRFLA 556
SDR+ V EG+ + G PP + E NRF+A
Sbjct: 217 SDRIAVLSEGQVQQVG---PPEEIYERPGNRFVA 247
>dbj|BAB05475.1| (AP001513) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 223
Score = 81.9 bits (199), Expect = 2e-14
Identities = 65/218 (29%), Positives = 109/218 (49%), Gaps = 27/218 (12%)
Query: 343 LVEYPRLVKDY--GSFKLEVEPG---EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 397
+++ + K Y G ++EV G E+ KGE+I I+G +G GK+T + +LAG+++P G
Sbjct: 1 MIQLKEIKKTYFMGKQQIEVLKGIDLEVNKGEMIAIMGRSGSGKSTLLNILAGLDKPDHG 60
Query: 398 KVEWDL-TVAYKPQYIKAEYE----GTVYELLSKIDSSKL---------NSNFYKTEL-- 441
+ T+ K AE+ G + + IDS + SN K E+
Sbjct: 61 IYLYQQETIHEKTLNDLAEFRRKRIGFILQNYPLIDSKNVFDNVALPLKYSNIPKKEMTD 120
Query: 442 -----LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 496
L LGI + R+V+ LSGGE QRVAIA L++ ++ L DEP+ LD E +
Sbjct: 121 KVTTMLSTLGIEYVQSRSVDMLSGGEAQRVAIARALIQQPELILADEPTGSLDEESETEI 180
Query: 497 SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGE 534
+ L ++ KT ++V H+ + + + + +G+
Sbjct: 181 LALCKQLNDEG-KTLIIVTHNPHVAEICHKKYKIHDGK 217
Score = 70.6 bits (170), Expect = 5e-11
Identities = 59/200 (29%), Positives = 96/200 (47%), Gaps = 27/200 (13%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN----LCEDNDSWD---NVIRAFR----GN 148
V G ++ I+G +G+GK+T + ILAG P+ L + + N + FR G
Sbjct: 28 VNKGEMIAIMGRSGSGKSTLLNILAGLDKPDHGIYLYQQETIHEKTLNDLAEFRRKRIGF 87
Query: 149 ELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVL 208
LQNY V P +PK +E+ KV + + L +E V
Sbjct: 88 ILQNYPLIDSKNVFDNVALPLKYSNIPK------KEMTDKVTTM------LSTLGIEYVQ 135
Query: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 268
R + LSGGE QRVAIA AL+++ DEP+ LD ++ + ++L +EGK ++
Sbjct: 136 SRSVDMLSGGEAQRVAIARALIQQPELILADEPTGSLDEESETEILALCKQLNDEGKTLI 195
Query: 269 VVEHDLAVLDYLSDVIHVVY 288
+V H+ +++++ H Y
Sbjct: 196 IVTHN----PHVAEICHKKY 211
>emb|CAC12530.1| (AL445067) ferrichrome ABC transporter (ATP-binding p) related
protein [Thermoplasma acidophilum]
Length = 244
Score = 81.9 bits (199), Expect = 2e-14
Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 25/215 (11%)
Query: 343 LVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD 402
++E R+ D +F++ I + V GI G NG GKTT +K + G +P+EG + D
Sbjct: 1 MIEAERVSIDRKTFRINGLSFSIVENAVNGIGGLNGSGKTTILKAMYGFLKPSEGAIYID 60
Query: 403 ---------------LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 447
++V ++ Q + + TV +++S S+ + E L+ GI
Sbjct: 61 GKDVSTMSPKQIAALVSVVHQEQPVPMNF--TVRDIVSLSGYSRRSPGPSVDECLEVCGI 118
Query: 448 IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN 507
L R LSGGE + V AA + ++ LLDEP +LD+++ + V IR E+
Sbjct: 119 AHLSQREFSTLSGGEKRIVMFAAAMYQNTKYILLDEPMTFLDIDKAVKVMSIIRRFREEG 178
Query: 508 EKTALVVEHDVLMIDYVSDRL-------IVFEGEP 535
KT ++V HD+ + D + I+++G+P
Sbjct: 179 -KTIVIVSHDINFLYNECDNVILMRSGEILYQGDP 212
>pir||H72356 amino acid ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981110|gb|AAD35676.1|AE001734_3 (AE001734) amino
acid ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 242
Score = 81.5 bits (198), Expect = 2e-14
Identities = 69/213 (32%), Positives = 111/213 (51%), Gaps = 26/213 (12%)
Query: 342 TLVEYPRLVKDYGSFKLEVEPG---EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 398
T+++ L K +G KL V G E++KGEVI I+GP+G GK+T ++ + +EE GK
Sbjct: 2 TVLKIEDLHKYFG--KLYVLRGIDLEVKKGEVISIIGPSGSGKSTLLRCINLLEEYQRGK 59
Query: 399 V--EWDLTVAYKPQYIKAEYEGTVYELLSKIDS-SKLNS---------NFYKTE------ 440
+ + +L I++ G V++ + S LN+ N K E
Sbjct: 60 IYFKGELITHRNINRIRSSI-GMVFQQFNLFPHLSVLNNLTLAPMKVKNMQKDEAVEKAK 118
Query: 441 -LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 499
LL+ +G+I+ + +LSGG+ QRVAIA L+ D ++ L DEP++ LD E V
Sbjct: 119 KLLERVGLIEKINEKPGNLSGGQQQRVAIARALMMDPELMLFDEPTSALDPELVKEVLDV 178
Query: 500 IRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 532
I+ L + T L+V H++ VSDR++ +
Sbjct: 179 IKDLAQSG-MTMLIVTHEMRFARDVSDRVVFMD 210
Score = 78.4 bits (190), Expect = 2e-13
Identities = 73/253 (28%), Positives = 120/253 (46%), Gaps = 42/253 (16%)
Query: 84 VHRYGVNAFVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKIL-------------AGQLIP 129
+H+Y +VL + + VK G V+ I+GP+G+GK+T ++ + G+LI
Sbjct: 9 LHKYFGKLYVLRGIDLEVKKGEVISIIGPSGSGKSTLLRCINLLEEYQRGKIYFKGELIT 68
Query: 130 NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV 189
+ N ++ F+ L + L N + L P VK ++K
Sbjct: 69 HR-NINRIRSSIGMVFQQFNLFPHLSVLNN-----------LTLAPMKVKN-----MQKD 111
Query: 190 DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 249
+ V K +++++ + L ++ + LSGG+ QRVAIA AL+ FDEP+S LD
Sbjct: 112 EAVEKAKKLLERVGLIEKINEKPGNLSGGQQQRVAIARALMMDPELMLFDEPTSALDPEL 171
Query: 250 RLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPG-------VYGIFSKPKG 302
+V VI+ LA G +L+V H++ +SD VV+ + G IFS P+
Sbjct: 172 VKEVLDVIKDLAQSGMTMLIVTHEMRFARDVSD--RVVFMDEGRIVEMGPPEKIFSNPEN 229
Query: 303 TRNGINEFLQGYL 315
R EFL+ +L
Sbjct: 230 ERT--REFLEHFL 240
>pir||B82185 glycerol-3-phosphate ABC transporter, ATP-binding protein VC1552
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9656059|gb|AAF94706.1| (AE004233)
glycerol-3-phosphate ABC transporter, ATP-binding
protein [Vibrio cholerae]
Length = 393
Score = 81.5 bits (198), Expect = 2e-14
Identities = 57/207 (27%), Positives = 106/207 (50%), Gaps = 21/207 (10%)
Query: 343 LVEYPRLVKDYGSFKLEVEPGE--IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE 400
+++ +LVK Y + V+ + I +GE I +VGP+G GK++ ++ +AG+E T G++
Sbjct: 22 MLDIKQLVKTYDNGHQAVKGVDLSIHQGEFIVLVGPSGCGKSSILRSIAGLESITSGEIH 81
Query: 401 W-------------DLTVAYKPQYI---KAEYEGTVYELLSK-IDSSKLNSNFYKTELLK 443
D+ + ++ + + Y+ Y L ++ +D + + K + K
Sbjct: 82 LAGRRVDNEKPANRDIAMVFQNYALYPHMSVYDNLAYGLKNRGVDKQTIAAKIAK--VAK 139
Query: 444 PLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 503
L I + DR LSGG+ QRVA+ ++RD ++L DEP + LD R + I+ L
Sbjct: 140 TLKIEEYLDRKPAKLSGGQRQRVAMGRAIVRDPQLFLFDEPLSNLDAALRAHMRLEIKKL 199
Query: 504 MEKNEKTALVVEHDVLMIDYVSDRLIV 530
+ T++ V HD + ++DR++V
Sbjct: 200 QRELGVTSVYVTHDQVEAMTLADRIVV 226
>pir||E83154 probable ATP-binding component of ABC taurine transporter PA3937
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950123|gb|AAG07324.1|AE004811_7 (AE004811) probable
ATP-binding component of ABC taurine transporter
[Pseudomonas aeruginosa]
Length = 263
Score = 81.5 bits (198), Expect = 2e-14
Identities = 60/225 (26%), Positives = 109/225 (47%), Gaps = 25/225 (11%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE-- 422
+ KGE + ++GP+G GK+T + +LAG ++P +G+V+ D P G V++
Sbjct: 30 LAKGESLVVLGPSGCGKSTLLNILAGFQKPDQGRVQIDGRTLEGP----GGERGVVFQDD 85
Query: 423 ----LLSKIDS----------SKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAI 468
L+ +D+ K ++L+ +G+ + +++V LSGG+ QR+ +
Sbjct: 86 ALMPWLNALDNVALGLRIRGLGKAERTARARQVLQLVGLQEYAEQSVAQLSGGQRQRLGL 145
Query: 469 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 528
A L + D LLDEP LD R + + L ++ K ++ H V +++ L
Sbjct: 146 ARALAVEPDFLLLDEPFGALDALTRERMQVLLLDLWKQTGKGLFLITHSVDEALFLATDL 205
Query: 529 IVFEGEPGRHGRALPPMGMREGMNRFLASVGI-TFRRDPDSGRPR 572
+V +G P R + LP + R+ A + + + DP+ GR R
Sbjct: 206 VVMDGPPARIVKRLPV----DFARRYAAGETVRSIKADPEFGRLR 246
>pir||C64496 ABC transporter ATP-binding protein - Methanococcus jannaschii
>gi|1592193|gb|AAB99589.1| (U67597) cobalt transport
ATP-binding protein (cbiO) [Methanococcus jannaschii]
Length = 278
Score = 81.1 bits (197), Expect = 3e-14
Identities = 76/255 (29%), Positives = 124/255 (47%), Gaps = 22/255 (8%)
Query: 105 VVGIVGPNGTGKTTAVKILAGQLIPN----LCEDNDSWDNVIRAFRGNELQNYFERLKNG 160
VV I+GPNG GKTT +KIL G + P+ E D ++R EL F R
Sbjct: 33 VVAILGPNGAGKTTLLKILDGLVFPDKGEVYFEGKKLTDEILR---DKELMKEFRR---- 85
Query: 161 EIRPVVKPQYVDLLPKAVKGKVR----ELLKKVDEVGKFEEVVKELELENVLDRELHQLS 216
++ V + V L V +V L K + ++ +K++++ ++ DR + LS
Sbjct: 86 KVGFVFQNPDVMLFNPTVWDEVAFSPLHLYSKEKAIEVTDKTLKDMKIYHLKDRHPYNLS 145
Query: 217 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAV 276
GGE ++V+I+ L + DEP+S LD + R ++ +I+ GK V++V HDL
Sbjct: 146 GGEKKKVSISCILSVEPEVILMDEPTSALDPKSRAEIMNLIKSFKECGKTVVLVTHDLN- 204
Query: 277 LDYLSDVIHV----VYGEPGVYGIFSKPKGTRN-GINEFLQGYLKDENVRFRPYEIRFTK 331
L L+D +V V E V +FS N + E + ++K +N+ + EI T
Sbjct: 205 LACLADRCYVLNKKVIFEGKVKDLFSLNLDELNLDVPEISKLFIKLKNMGYNINEIPVT- 263
Query: 332 LSERVDVERETLVEY 346
L E V++ + +Y
Sbjct: 264 LDEAVNIISKLFQKY 278
Score = 79.6 bits (193), Expect = 9e-14
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 354 GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD----LTVAYKP 409
GS L+ I K EV+ I+GPNG GKTT +K+L G+ P +G+V ++ +
Sbjct: 17 GSIALDNVNLNIYKNEVVAILGPNGAGKTTLLKILDGLVFPDKGEVYFEGKKLTDEILRD 76
Query: 410 QYIKAEYEGTVYELLSKIDSSKLNS-----------NFYKTE--------LLKPLGIIDL 450
+ + E+ V + D N + Y E LK + I L
Sbjct: 77 KELMKEFRRKVGFVFQNPDVMLFNPTVWDEVAFSPLHLYSKEKAIEVTDKTLKDMKIYHL 136
Query: 451 YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 510
DR+ +LSGGE ++V+I+ L + ++ L+DEP++ LD + R + I+ E KT
Sbjct: 137 KDRHPYNLSGGEKKKVSISCILSVEPEVILMDEPTSALDPKSRAEIMNLIKSFKECG-KT 195
Query: 511 ALVVEHDVLMI-----DYVSDRLIVFEGE 534
++V HD+ + YV ++ ++FEG+
Sbjct: 196 VVLVTHDLNLACLADRCYVLNKKVIFEGK 224
>pir||E69162 sulfate transport system ATP-binding - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621547|gb|AAB84983.1| (AE000832) sulfate transport
system ATP-binding [Methanobacterium
thermoautotrophicum]
Length = 348
Score = 81.1 bits (197), Expect = 3e-14
Identities = 60/215 (27%), Positives = 108/215 (49%), Gaps = 27/215 (12%)
Query: 343 LVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW 401
++E + K YG K LE ++R+GE +GI+GP G GK+T ++++ +E P +G++ +
Sbjct: 4 VIELSGITKSYGDIKVLEDVNLKVREGETLGIIGPTGAGKSTLLRIMDLLERPDDGEILF 63
Query: 402 --DLTVAYKPQYIKAE----------YEGTVYELL---SKIDSSKLNSNFYKTELLKPLG 446
+ KP ++ + GTV E + +I + + + K ++L+ +G
Sbjct: 64 MGENVDDLKPLEVRRRMGMVFQNTPVFRGTVAESILYGPRIRGERPHESEVK-DVLETMG 122
Query: 447 IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 506
+ R +LSGGE QR+A+A L+ ++ LLDE ++ LD R + I L
Sbjct: 123 LKGYGSRRTTELSGGERQRLALAQVLINRPEVVLLDEATSSLDPISRSRMEDVIAEL--- 179
Query: 507 NEKTALVVEHDVLMIDYVSDRLIVFE------GEP 535
+ T + HD+L ++DR+ + GEP
Sbjct: 180 -DVTVIFTTHDLLQGQKLADRIAILNRSILQTGEP 213
>gb|AAC31907.1| (AF075709) ABC transporter ATP-binding subunit [Pseudomonas putida]
Length = 270
Score = 81.1 bits (197), Expect = 3e-14
Identities = 60/183 (32%), Positives = 92/183 (49%), Gaps = 15/183 (8%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELL 424
I G+ + IVG +G GK+T +++LAG+++PT G +L P E +++
Sbjct: 39 IPAGQFVAIVGRSGCGKSTLLRLLAGLDQPTAG----ELLAGAAPLAEAREETRLMFQDA 94
Query: 425 SKIDSSKLNSNF-------YKTELLKPLGIIDLYDRNVE---DLSGGELQRVAIAATLLR 474
+ K+ N ++ L L + L DR E LSGG+ QRVA+A L+
Sbjct: 95 RLLPWKKVIDNVGLGLKGDWRQRALDALEAVGLADRANEWPAALSGGQKQRVALARALIH 154
Query: 475 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE-G 533
+ LLDEP LD R+ + + I L ++ T L+V HDV V+DR+I+ E G
Sbjct: 155 QPRLLLLDEPLGALDALTRIEMQQLIERLWRQHGFTVLLVTHDVNEAVAVADRVILIEDG 214
Query: 534 EPG 536
E G
Sbjct: 215 EVG 217
>emb|CAB42874.1| (Y19002) PrtD protein [Erwinia amylovora]
Length = 588
Score = 81.1 bits (197), Expect = 3e-14
Identities = 58/196 (29%), Positives = 98/196 (49%), Gaps = 23/196 (11%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT-------------VAYKPQY 411
I+ GEV+GI+GP+ GK+T ++L G+ +EG V D + Y PQ
Sbjct: 355 IQPGEVLGIIGPSRSGKSTLARLLVGIWPVSEGIVRLDNADIYQWNKDELGPYIGYLPQD 414
Query: 412 IKAEYEGTVYELLSK---IDSSKLN-----SNFYKTELLKPLGIIDLYDRNVEDLSGGEL 463
I+ + GT+ E +++ IDS K+ + ++ L P G + LSGG+
Sbjct: 415 IEL-FAGTIAENIARFNEIDSEKVIEAARLAGVHEMILRFPKGYDSVLGNGGAGLSGGQK 473
Query: 464 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 523
QR+ +A L D + +LDEP+A LD A+++AI L ++N KT +++ H ++
Sbjct: 474 QRIGLARALYGDPSLVILDEPNANLDDAGEKALNQAILFLKQRN-KTVILITHRTHLLSM 532
Query: 524 VSDRLIVFEGEPGRHG 539
+ L++ G G
Sbjct: 533 TTRLLLLVNGNVNAFG 548
>pir||A75184 ATP-binding transport protein PAB0434 - Pyrococcus abyssi (strain
Orsay) >gi|5458062|emb|CAB49552.1| (AJ248284)
ATP-BINDING TRANSPORT PROTEIN [Pyrococcus abyssi]
Length = 244
Score = 81.1 bits (197), Expect = 3e-14
Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 32/234 (13%)
Query: 342 TLVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE 400
T V L KDYG K L +I +GE+ G++GPNG GK+T +K+LA + PT G+ E
Sbjct: 5 TAVAVSNLEKDYGKVKALRGVSFQIEEGEIFGLIGPNGAGKSTTLKILATLLHPTGGRAE 64
Query: 401 ---WDLT---------VAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFY-----KTELLK 443
D+ ++Y P+ E Y+ L+ ++ + + Y K E +
Sbjct: 65 VFGHDVVKEASEVRKLISYLPE------EAGAYKRLTGLEYLEFMAKLYAKDSRKAEKML 118
Query: 444 PLGII-----DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 498
LGI + + V S G ++R+ +A L+ + +LDEP++ LD+ + R
Sbjct: 119 KLGIELSGLGERLNDKVSTYSKGMVRRLLLARALMVKPKLAILDEPTSGLDIMNAFEIRR 178
Query: 499 AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMN 552
I+ K T L+ H++L ++Y+ DR+ + GR P ++E N
Sbjct: 179 TIKE-FSKEGVTFLISSHNMLEVEYLCDRVALI--HKGRILEVGTPRELKERYN 229
Score = 73.0 bits (176), Expect = 9e-12
Identities = 50/190 (26%), Positives = 99/190 (51%), Gaps = 8/190 (4%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIR-AFRGNELQNYFERLK 158
+++G + G++GPNG GK+T +KILA L P +V++ A +L +Y +
Sbjct: 29 IEEGEIFGLIGPNGAGKSTTLKILATLLHPTGGRAEVFGHDVVKEASEVRKLISYLPE-E 87
Query: 159 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGG 218
G + + +Y++ + K R+ +K+ ++G ++ L L+ ++ S G
Sbjct: 88 AGAYKRLTGLEYLEFMAKLYAKDSRKA-EKMLKLG-----IELSGLGERLNDKVSTYSKG 141
Query: 219 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLD 278
++R+ +A AL+ K DEP+S LDI ++ R I+ + EG L+ H++ ++
Sbjct: 142 MVRRLLLARALMVKPKLAILDEPTSGLDIMNAFEIRRTIKEFSKEGVTFLISSHNMLEVE 201
Query: 279 YLSDVIHVVY 288
YL D + +++
Sbjct: 202 YLCDRVALIH 211
>gi|11467821 probable transport protein [Nephroselmis olivacea]
>gi|5880750|gb|AAD54843.1|AF137379_66 (AF137379)
probable transport protein [Nephroselmis olivacea]
Length = 343
Score = 81.1 bits (197), Expect = 3e-14
Identities = 62/200 (31%), Positives = 102/200 (51%), Gaps = 22/200 (11%)
Query: 351 KDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTVAY 407
K +G+F+ L+ E++ G ++ +VGP+G GK+T ++M+AG+E EGK+ W Y
Sbjct: 10 KTFGTFRALDHVNLEVKAGSLVALVGPSGSGKSTLLRMIAGLERADEGKI-WLAGRDATY 68
Query: 408 KPQYIKAEYEGTV---YELLSKIDSSK----------LNSNFYKT---ELLKPLGIIDLY 451
P I+ + G V Y L ++ +K N N ++ +LL+ + + +
Sbjct: 69 AP--IQKRHIGFVFQNYALFKHLNVAKNISFGLEVRQANPNQIRSRVRDLLQLIQLEHMA 126
Query: 452 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 511
DR LSGG+ QRVA+A L + + LLDEP LD R + +R L ++ T
Sbjct: 127 DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDARVRRELRSWLRDLHQEMPVTT 186
Query: 512 LVVEHDVLMIDYVSDRLIVF 531
+ V HD V+ ++VF
Sbjct: 187 VFVTHDQQEAMEVAHEIVVF 206
>pir||C81026 ABC transporter, ATP-binding protein NMB1919 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7227177|gb|AAF42249.1| (AE002541) ABC transporter,
ATP-binding protein [Neisseria meningitidis MC58]
Length = 621
Score = 81.1 bits (197), Expect = 3e-14
Identities = 68/208 (32%), Positives = 111/208 (52%), Gaps = 28/208 (13%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVA-YKPQYIKAEY----- 416
+IR+GE + +VG +G GK+T V +L EP+ G + D + +A K ++A++
Sbjct: 399 DIRQGERVALVGRSGSGKSTVVNLLPRFVEPSAGNICIDGIDIADIKLDCLRAQFALVSQ 458
Query: 417 -----EGTVYELL--SKIDSSKLNSNF-YKTELLK------PLGIIDLYDRNVEDLSGGE 462
+ T++E + S+ D+ + F +T L+ PLG+ N +LSGG+
Sbjct: 459 DVFLFDDTLFENVRYSRPDAGEAEVLFALQTANLQSLIDSSPLGLHQPIGSNGSNLSGGQ 518
Query: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 522
QRVAIA +L+DA I LLDE ++ LD E V +A+ LME +T ++V H + I+
Sbjct: 519 RQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLME--NRTGIIVAHRLTTIE 576
Query: 523 YVSDRLIVFEG----EPGRHGRALPPMG 546
+DR+IV + E G H + + G
Sbjct: 577 -GADRIIVMDDGKIIEQGTHEQLMSQNG 603
>gb|AAG20488.1| (AE005121) sulfate transport system ATP-binding protein; CysA
[Halobacterium sp. NRC-1]
Length = 343
Score = 81.1 bits (197), Expect = 3e-14
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 21/234 (8%)
Query: 342 TLVEYPRLVKDYGSFKLEVEPGE--IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
T VE LV+ +GS V+ I GE +VGP+G GKTT ++++AG E P G++
Sbjct: 2 TSVELQGLVRAFGSTTTAVDDVSVSIADGEFFTLVGPSGCGKTTTLRLIAGFETPDRGEI 61
Query: 400 EW-------------DLTVAYKPQYIKAEY---EGTVYELLSKIDSSKLNSNFYKTELLK 443
+ D+ + ++ + E Y L + ++ +ELL
Sbjct: 62 VFGDRSVSGVPPEDRDVGIVFQSYALFPHMTVRENVAYGLRFREPPGGASTEERVSELLS 121
Query: 444 PLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 503
+ + DR LSGG+ QRVA+A L + LLDEP + LD R + I+ +
Sbjct: 122 LVDLAGTGDREPAALSGGQQQRVALARALAPGPSVLLLDEPMSALDARLRDRLRGTIKEI 181
Query: 504 MEKNEKTALVVEHDVLMIDYVSDRLIVF-EGEPGRHGRALPPMGMREGMNRFLA 556
+ + T + V HD +SDR+ V +G + G P RE +RF+A
Sbjct: 182 QRELDITTVYVTHDQAEALSISDRVAVMRDGAVVQVG--TPEAVYREPSSRFVA 233
>dbj|BAA05388.1| (D26358) CmpC [Synechococcus sp.]
Length = 663
Score = 80.8 bits (196), Expect = 4e-14
Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 14/187 (7%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV--EWDLTVAYKPQYIKAEYEGTVY 421
EI++GE I ++G +G GK+T + ++AG+E PT+G V E A P + +++
Sbjct: 31 EIKQGEFISLIGHSGCGKSTLLNLIAGLELPTDGAVSLEGQQITAPGPDRMVVFQNYSLF 90
Query: 422 ELLSKIDSSKLNSNFYKTELLKP------------LGIIDLYDRNVEDLSGGELQRVAIA 469
L+ ++ L + +L K +G+ D+ LSGG QRVAIA
Sbjct: 91 PWLTVRENIALAVDEVLRDLPKEERQAIVEEHIQLVGLGHAADKPPAQLSGGMKQRVAIA 150
Query: 470 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 529
L + LLDEP LD R + + + E+N TA++V HDV +SDR++
Sbjct: 151 RGLATRPKLLLLDEPFGALDALTRGNLQEKLMQICEENHVTAVMVTHDVDEAVLLSDRIV 210
Query: 530 VFEGEPG 536
+ PG
Sbjct: 211 MLTNGPG 217
>sp|Q57399|YE70_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN HI1470
>gi|1074080|pir||F64125 ferric enterobactin transport
ATP-binding protein homolog HI1470 - Haemophilus
influenzae (strain Rd KW20) >gi|1574311|gb|AAC23118.1|
(U32825) iron chelatin ABC transporter, ATP-binding
protein, putative [Haemophilus influenzae Rd]
Length = 253
Score = 80.8 bits (196), Expect = 4e-14
Identities = 44/184 (23%), Positives = 94/184 (50%), Gaps = 8/184 (4%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYEL 423
++ KG+++ ++G NG GK+T + +L G+ P +GK+E ++ + PQ+ + + +V ++
Sbjct: 27 DLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDI 86
Query: 424 LSKIDSSKLN------SNFYKT--ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRD 475
+ S+ +N S+ Y+ + L L + L R LSGG+ Q + IA + +
Sbjct: 87 VLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASE 146
Query: 476 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEP 535
+ LLDEP++ LD+ + V + L + T + H + ++++ ++ +
Sbjct: 147 CKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206
Query: 536 GRHG 539
+ G
Sbjct: 207 FKFG 210
>pir||S77386 nitrate transport protein D-3 - Synechocystis sp. (strain PCC 6803)
>gi|1652568|dbj|BAA17489.1| (D90906) nitrate transport
protein NrtD [Synechocystis sp.]
Length = 332
Score = 80.8 bits (196), Expect = 4e-14
Identities = 52/186 (27%), Positives = 91/186 (47%), Gaps = 14/186 (7%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG--KVEWDLTVAYKPQYI--------- 412
E+++GE I I+G +G GK+T + M++G +PT+G K++ L A P +
Sbjct: 44 EVKEGEFICIIGHSGCGKSTLLNMVSGFNQPTQGTVKLKNQLITAPGPDRMMVFQNYCLL 103
Query: 413 --KAEYEGTVYELLSKI-DSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIA 469
K+ Y+ + S D SK L+ +G+ + + +SGG QRVAIA
Sbjct: 104 PWKSAYDNVSLAVESVYPDKSKTEKEELVAHYLEMVGLTEAAQKKPGQISGGMKQRVAIA 163
Query: 470 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 529
L ++ +LDEP LD + + + + +N T L++ HD+ +++DRL+
Sbjct: 164 RALAISPEVLILDEPFGALDAITKEELQEELLKIWRENNLTVLMITHDIDEALFLADRLV 223
Query: 530 VFEGEP 535
+ P
Sbjct: 224 MMTNGP 229
>pir||A70001 ABC transporter (ATP-binding protein) homolog ytsC - Bacillus
subtilis >gi|2293177|gb|AAC00255.1| (AF008220)
transporter [Bacillus subtilis]
>gi|2635522|emb|CAB15016.1| (Z99119) similar to ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 253
Score = 80.8 bits (196), Expect = 4e-14
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 26/218 (11%)
Query: 343 LVEYPRLVKDYGSF--KLEVEPG---EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 397
++E ++ K YG+ K EV G I KGE + I+G +G GKTT + +L+ +++ + G
Sbjct: 3 ILEANKIRKSYGNKLNKQEVLKGIDIHIEKGEFVSIMGASGSGKTTLLNVLSSIDQVSHG 62
Query: 398 KVEW---DLTVAYKPQY--IKAEYEGTVYELLSKIDS----------------SKLNSNF 436
+ D+T + Q + ++ G +++ + +D+ SK +N
Sbjct: 63 TIHINGNDMTAMKEKQLAEFRKQHLGFIFQDYNLLDTLTVKENILLPLSITKLSKKEANR 122
Query: 437 YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 496
E+ K LGI +L D+ ++SGG+ QR + + D I DEP+ LD + +
Sbjct: 123 KFEEVAKELGIYELRDKYPNEISGGQKQRTSAGRAFIHDPSIIFADEPTGALDSKSASDL 182
Query: 497 SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGE 534
+ L +K T ++V HD + Y + + +G+
Sbjct: 183 LNKLSQLNQKRNATIIMVTHDPVAASYCGRVIFIKDGQ 220
>pir||T31078 probable ABC-transporter TycE - Brevibacillus brevis
>gi|2623775|gb|AAC45932.1| (AF004835) putative
ABC-transporter TycE [Brevibacillus brevis]
Length = 583
Score = 80.8 bits (196), Expect = 4e-14
Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 32/215 (14%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------------EWDLTVAYKPQ 410
++ +G++ +VG +G GK+T +K+L G P+ G + E ++Y PQ
Sbjct: 350 QVGRGQMAALVGTSGGGKSTVMKLLLGYYPPSAGSLPLLGKPIGQYSIAEMRSLISYVPQ 409
Query: 411 YIKAEYEGTVYELL-------SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVED----LS 459
+EGT+ E + ++ + + + Y + + L D Y + LS
Sbjct: 410 DAFL-FEGTIEENIRYGCLDATEEEVIRASKAAYAHDFIMELP--DGYQTRTGERGAKLS 466
Query: 460 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 519
GG+ QR+AIA +L++A I LLDE ++ LD E V RA+ LM+ EKT LV+ H +
Sbjct: 467 GGQRQRIAIARAILKNAPILLLDEATSALDTESEFWVQRALAALMQ--EKTVLVIAHRLS 524
Query: 520 MIDYVSDRLIVFEG---EPGRHGRALPPMGMREGM 551
I++ ++ EG E GRH L G+ M
Sbjct: 525 TIEHADMIYVLHEGKVMEQGRHAELLAQNGLYASM 559
>pir||E72224 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4982238|gb|AAD36730.1|AE001808_5 (AE001808)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 259
Score = 80.8 bits (196), Expect = 4e-14
Identities = 59/192 (30%), Positives = 99/192 (50%), Gaps = 18/192 (9%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKN 159
G + +VG NG+GKTT +KILAG L + + + ++R G QN ++
Sbjct: 28 GKIYVVVGKNGSGKTTLLKILAGLLEAEGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIG 87
Query: 160 GEIRPVV--KPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSG 217
+ V + + L ++ +++++L+ V G LE E+ L+ LSG
Sbjct: 88 ATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSG--------LEKEDPLN-----LSG 134
Query: 218 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVL 277
G+ QR+AIA+ L R F DEP S LD + ++ +V+ L NEGK +++V H+L L
Sbjct: 135 GQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYL 194
Query: 278 DYLSDVIHVVYG 289
D + ++H+ G
Sbjct: 195 DDMDFILHISNG 206
>pir||F70032 ABC transporter (ATP-binding protein) homolog yvcR - Bacillus
subtilis >gi|1945657|emb|CAB08064.1| (Z94043)
hypothetical protein [Bacillus subtilis]
>gi|2635983|emb|CAB15475.1| (Z99121) similar to ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 259
Score = 80.4 bits (195), Expect = 5e-14
Identities = 57/199 (28%), Positives = 100/199 (49%), Gaps = 18/199 (9%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILA-------GQLIPNLCEDNDSWDNVIRAFRGNELQN 152
V G VGI+GP+G+GKTT + +LA G+++ N + D + FR EL
Sbjct: 32 VSKGEFVGIMGPSGSGKTTLLNLLATIDKPTQGEMMINGIQPKTLKDQELALFRRRELGF 91
Query: 153 YFERLKNGEIRPVVKPQYVDLLPKAV-KGKVRELLKKVDEVGKFEEVVKELELENVLDRE 211
F+ + + + LLP A+ K K+RE+ ++DE+ L+++++LD
Sbjct: 92 VFQDFN---LLDTLTIRENILLPLALDKVKLREMEARLDELAD------TLQIKHILDHR 142
Query: 212 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKA-VLVV 270
+++SGG+ QR A A A++ DEP+ LD + +V + +L E +A +L+V
Sbjct: 143 TYEVSGGQQQRAACARAIIHNPALILADEPTGNLDSKSAKQVMNTLAQLNEEKEATILLV 202
Query: 271 EHDLAVLDYLSDVIHVVYG 289
HD + ++ + G
Sbjct: 203 THDATAASFCKRIVFIKDG 221
Score = 79.2 bits (192), Expect = 1e-13
Identities = 51/193 (26%), Positives = 91/193 (46%), Gaps = 27/193 (13%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE------- 417
+ KGE +GI+GP+G GKTT + +LA +++PT+G++ + +P+ +K +
Sbjct: 32 VSKGEFVGIMGPSGSGKTTLLNLLATIDKPTQGEM---MINGIQPKTLKDQELALFRRRE 88
Query: 418 -GTVYELLSKIDSSKLNSNFYKT----------------ELLKPLGIIDLYDRNVEDLSG 460
G V++ + +D+ + N EL L I + D ++SG
Sbjct: 89 LGFVFQDFNLLDTLTIRENILLPLALDKVKLREMEARLDELADTLQIKHILDHRTYEVSG 148
Query: 461 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 520
G+ QR A A ++ + + L DEP+ LD + V + L E+ E T L+V HD
Sbjct: 149 GQQQRAACARAIIHNPALILADEPTGNLDSKSAKQVMNTLAQLNEEKEATILLVTHDATA 208
Query: 521 IDYVSDRLIVFEG 533
+ + + +G
Sbjct: 209 ASFCKRIVFIKDG 221
>pir||D72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981012|gb|AAD35586.1|AE001726_20 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 327
Score = 80.4 bits (195), Expect = 5e-14
Identities = 75/274 (27%), Positives = 125/274 (45%), Gaps = 48/274 (17%)
Query: 100 VKDGMVVGIVGPNGTGKT-TAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL----QNYF 154
V++G +GIVG +G+GK+ T++ I+ L + N + F+G L +N
Sbjct: 25 VREGETLGIVGESGSGKSVTSLSIM------RLLDQNGKIVDGKIIFKGRNLLELSENEM 78
Query: 155 ERLKNGEIRPVVKPQYVDLLPKAVKG-KVRELLKKVDEVGKFEEVVKELEL--------- 204
+++ EI + + V L P G ++ E + V + E ++L
Sbjct: 79 RKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILHQNVSEKEARKMAIDLLRKVGIPEP 138
Query: 205 ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE- 263
E +D HQLSGG QR IA AL + DEP++ LD+ + ++ +++ L E
Sbjct: 139 EKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPTTALDVTIQAQILELMKELQKEY 198
Query: 264 GKAVLVVEHDLAVLDYLSDVIHVVY-GEPGVYG----IFSKPKGTRNGINEFLQGYLKDE 318
G A++++ HD+ V+ +SD + V+Y G+ YG IF++PK
Sbjct: 199 GMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTIFTEPK----------------- 241
Query: 319 NVRFRPYEIRFTKLSERVDVERETLVEYPRLVKD 352
PY + R+DVE+E L P V D
Sbjct: 242 ----HPYTYALLESIPRIDVEQERLKSIPGNVPD 271
>dbj|BAB04930.1| (AP001511) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 264
Score = 80.0 bits (194), Expect = 7e-14
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 11/184 (5%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEY--EGTVY 421
EI GE + ++GP+G GK+T + ++AG+E+ + G V +P + E +
Sbjct: 31 EIHSGEFVSLLGPSGCGKSTLLNIVAGLEKASNGAVYVGQNKVIEPGPDRGVVFQEAALM 90
Query: 422 ELLSKIDS---------SKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATL 472
L+ +D+ +K + E LK + + +LSGG QRVAIA L
Sbjct: 91 PWLTVLDNVVFAIRKQYNKEEAKKRALEYLKLVHLSKFTHSYPHELSGGMKQRVAIARAL 150
Query: 473 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 532
D D+ L+DEP LD + R + R ++ + ++ +KT + V H++ +SD++ +
Sbjct: 151 ALDPDVLLMDEPFGALDEQTRSMLHRELQAIWQQTKKTIIFVTHNIREAILLSDKIFLMG 210
Query: 533 GEPG 536
PG
Sbjct: 211 VRPG 214
>gb|AAK42315.1| ABC transporter, ATP binding protein. [Sulfolobus solfataricus]
Length = 339
Score = 80.0 bits (194), Expect = 7e-14
Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 17/210 (8%)
Query: 340 RETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 398
R ++ L K +G F ++ E+ +GE+ G +GPNG GK+T +KML V +P+EG
Sbjct: 8 RNVAIKAINLTKRFGKFVAVDHINFEVYEGEIFGFLGPNGAGKSTTIKMLTTVLKPSEGT 67
Query: 399 VE---WDL---------TVAYKPQYIKAEYEGTVYELLSKIDS----SKLNSNFYKTELL 442
+D+ ++ PQ A+ + T +E + + K + ELL
Sbjct: 68 ATVSGYDVIKQPALVRQSIGVVPQEYTADEDLTGWENMMMMAGLYGIPKRIAEERAKELL 127
Query: 443 KPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 502
+ + + R VE SGG +R+ IA +L+ I LDEP+ LD + R A+ + I
Sbjct: 128 EMVELTYAAKRKVETYSGGMRRRLEIAMSLISRPRILFLDEPTLGLDAQTRAAIWQYIMK 187
Query: 503 LMEKNEKTALVVEHDVLMIDYVSDRLIVFE 532
L E+ + T V H + D DR+ + +
Sbjct: 188 LKEEYKMTIFVTTHYLEEADMYGDRIAIID 217
>gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sulfolobus
solfataricus]
Length = 617
Score = 80.0 bits (194), Expect = 7e-14
Identities = 64/203 (31%), Positives = 99/203 (48%), Gaps = 23/203 (11%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK- 158
+K G + +VG +G GK+T KILAG + + +I G ++ Y R
Sbjct: 388 LKKGTITALVGGSGHGKSTIAKILAGMI-------QQTSGKII--LLGKDVSEYGVRNSM 438
Query: 159 --NGEIRPVVKPQYVDLLPK-AVKGKVRELL---KKVDE----VGKFEEVVKELEL---E 205
++ + + Y L P+ V+ V L KKV + K EV+K + L E
Sbjct: 439 WYKENVQMIFQDPYSSLDPRHTVRWHVERPLLIHKKVSNKDQLLPKIIEVLKNVGLKPPE 498
Query: 206 NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK 265
L + H+LSGGE QRVAIA A + DEP S LD R + +I++ G
Sbjct: 499 KYLYKYPHELSGGERQRVAIARATAVEPKVLVADEPVSMLDASLRAGILNLIKKFKKNGI 558
Query: 266 AVLVVEHDLAVLDYLSDVIHVVY 288
++L + HD+A ++Y++D I V+Y
Sbjct: 559 SILYITHDIATVNYIADEIMVIY 581
>pir||S74048 probable daunorubicin resistance protein - Sulfolobus solfataricus
>gi|1707742|emb|CAA69462.1| (Y08256) daunorubicin
resistance ATP-binding protein DrrA [Sulfolobus
solfataricus]
Length = 339
Score = 80.0 bits (194), Expect = 7e-14
Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 17/210 (8%)
Query: 340 RETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 398
R ++ L K +G F ++ E+ +GE+ G +GPNG GK+T +KML V +P+EG
Sbjct: 8 RNVAIKAINLTKRFGKFVAVDHINFEVYEGEIFGFLGPNGAGKSTTIKMLTTVLKPSEGT 67
Query: 399 VE---WDL---------TVAYKPQYIKAEYEGTVYELLSKIDS----SKLNSNFYKTELL 442
+D+ ++ PQ A+ + T +E + + K + ELL
Sbjct: 68 ATVSGYDVIKQPALVRQSIGVVPQEYTADEDLTGWENMMMMAGLYGIPKRIAEERAKELL 127
Query: 443 KPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 502
+ + + R VE SGG +R+ IA +L+ I LDEP+ LD + R A+ + I
Sbjct: 128 EMVELTYAAKRKVETYSGGMRRRLEIAMSLISRPRILFLDEPTLGLDAQTRAAIWQYIMK 187
Query: 503 LMEKNEKTALVVEHDVLMIDYVSDRLIVFE 532
L E+ + T V H + D DR+ + +
Sbjct: 188 LKEEYKMTIFVTTHYLEEADMYGDRIAIID 217
>pir||E70337 ABC transporter - Aquifex aeolicus >gi|2983089|gb|AAC06695.1|
(AE000689) ABC transporter [Aquifex aeolicus]
Length = 238
Score = 80.0 bits (194), Expect = 7e-14
Identities = 60/195 (30%), Positives = 102/195 (51%), Gaps = 20/195 (10%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAE-------Y 416
+ KGE++G++GPNG GKTT + G +GKV D V + P + +A+
Sbjct: 24 VNKGEIVGLLGPNGAGKTTLFNSIIGFISVDKGKVLLDGEDVTHLPPFKRAQKGLAFLPQ 83
Query: 417 EGTVYELLSKIDSSKLNSNFY---------KTE-LLKPLGIIDLYDRNVEDLSGGELQRV 466
E T++E L+ +++ + F+ K E LL+ G+++L D+ LSGG+ +R+
Sbjct: 84 EHTLFEDLTVLENLLIFLEFFTDSKEEAITKAEALLEDFGLLELKDQKAYALSGGQKRRL 143
Query: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 526
IA +L+ LLDEP A LD + +++L + N L+ +H+V + D
Sbjct: 144 EIARSLITTPKYVLLDEPFAGLDPIIVSEIREIVKNL-KNNGIGVLITDHNVRETIKMVD 202
Query: 527 RL-IVFEGEPGRHGR 540
R+ I+ EG+ HG+
Sbjct: 203 RVYIISEGKVLAHGK 217
>pir||C72576 probable glutamine transport ATP-binding protein APE1891 -
Aeropyrum pernix (strain K1) >gi|5105583|dbj|BAA80896.1|
(AP000062) 238aa long hypothetical glutamine transport
ATP-binding protein [Aeropyrum pernix]
Length = 238
Score = 80.0 bits (194), Expect = 7e-14
Identities = 67/213 (31%), Positives = 99/213 (46%), Gaps = 23/213 (10%)
Query: 368 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLT-------------VAYKPQY 411
GE + I+GP+G GK+T +K + + EP G + + D+T + Y PQ
Sbjct: 20 GEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVFRGVDVTRLSGSQLRMVRRKIGYLPQS 79
Query: 412 IKAEYEGTV-----YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV 466
TV Y L + S+ ++ + L LGI DL R+ LSGG+ QR
Sbjct: 80 YSLFPHMTVLRNITYPLEKALGLSRRDAEERAVKYLSMLGIEDLAHRHPARLSGGQQQRA 139
Query: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 526
A+A L + DI LLDEP++ LD E R V A+ + K +VV H+ V+D
Sbjct: 140 ALARALAMEPDILLLDEPTSALDPESRADVLEALFRVATLG-KAMIVVTHEADFAVKVAD 198
Query: 527 RLIVFE-GEPGRHGRALPPMGMREGMNRFLASV 558
R+ E G G+ + E + RFL S+
Sbjct: 199 RMAFMEDGIVKEEGKPSELVEGSERVRRFLESI 231
>pir||A83142 probable ATP-binding component of ABC transporter PA4037 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9950232|gb|AAG07424.1|AE004820_9 (AE004820) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 308
Score = 80.0 bits (194), Expect = 7e-14
Identities = 61/214 (28%), Positives = 109/214 (50%), Gaps = 25/214 (11%)
Query: 336 VDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 395
+D++R + R V + SF+++ +GE++G++GPNG GK+T +KML+G P+
Sbjct: 2 IDIDRLSKRFSGRTVVNDLSFRID-------RGEIVGLLGPNGAGKSTTLKMLSGFLAPS 54
Query: 396 EGKVE---WDL---------TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELL- 442
G V +D+ + Y P+ + E TV L+ + S + S K +
Sbjct: 55 AGSVRIFGFDMQDKARQAQKLIGYLPENAPSYGEMTVEGFLAFVASIRDYSGREKRRRID 114
Query: 443 KPLGIIDLYDRN---VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 499
+ ++L D +E LS G +RVA+A +L D ++ LLDEP+ LD Q+ V +
Sbjct: 115 SAMDCMELRDERRSIIETLSKGFKRRVALAQAILHDPELLLLDEPTDGLDPNQKHQVRQL 174
Query: 500 IRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 533
+++L E K ++ H + + ++ R +V G
Sbjct: 175 VKNLSE--SKIVVISTHILEEVSFMCSRALVING 206
>gb|AAD33527.2|AF132117_4 (AF132117) FhuA [Staphylococcus aureus]
>gi|9755013|gb|AAF98153.1|AF251216_1 (AF251216) FhuC
[Staphylococcus aureus]
Length = 265
Score = 79.6 bits (193), Expect = 9e-14
Identities = 70/237 (29%), Positives = 112/237 (46%), Gaps = 27/237 (11%)
Query: 357 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------L 403
KL+VE I G+V I+GPNG GK+T +K L+ + EG+V D
Sbjct: 21 KLDVE---IPDGKVTSIIGPNGCGKSTLLKALSRLLAVKEGEVFLDGENIHTQSTKEIAK 77
Query: 404 TVAYKPQYIKAEYEGTVYELLS------KIDSSKLNSNFYKTE--LLKPLGIIDLYDRNV 455
+A PQ + TV EL+S + +L + K ++ G R++
Sbjct: 78 KIAILPQSPEVADGLTVGELVSYGRFPHQKGFGRLTAEDKKEIDWAMEVTGTDTFRHRSI 137
Query: 456 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 515
DLSGG+ QRV IA L + DI LDEP+ YLD+ +L + ++ L ++ T ++V
Sbjct: 138 NDLSGGQRQRVWIAMALAQRTDIIFLDEPTTYLDICHQLEILELVQKLNQEQGCTIVMVL 197
Query: 516 HDVLMIDYVSDRLIVF-EGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRP 571
HD+ SD LI EG+ G + + + + ++ + +DP +G+P
Sbjct: 198 HDINQAIRFSDHLIAMKEGDIIATGSTEDV--LTQEILEKVFNIDVVLSKDPKTGKP 252
>emb|CAC05759.1| (AL391751) putative ABC transporter ATP-binding protein
[Streptomyces coelicolor]
Length = 318
Score = 79.6 bits (193), Expect = 9e-14
Identities = 59/202 (29%), Positives = 100/202 (49%), Gaps = 13/202 (6%)
Query: 340 RETLVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 398
R T V + R+ K YG + ++ + GE + ++GPNG GK+T + +L G+ P G
Sbjct: 3 RTTAVGFDRVTKGYGDVRAVDGLTLALHPGETVALLGPNGAGKSTTLDLLLGLRRPDAGT 62
Query: 399 VEW------DLTVAYKPQYIKAEY----EGTVYELLSKIDSSKLNSNFYKTELLKPLGII 448
V + VA + + E TV EL+ ++ + + ++L G+
Sbjct: 63 VHVFGGEPREAVVAGRVGAMLQSGGLMDEVTVAELV-RLGCALHPRAYPAADVLARAGLT 121
Query: 449 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 508
+ DR V+ LSGG+ QRV A D+D+ +LDEP+ +DV R A +R ++
Sbjct: 122 KIADRRVDKLSGGQAQRVRFALATAGDSDLIVLDEPTTGMDVTARQAFWATMREQADQG- 180
Query: 509 KTALVVEHDVLMIDYVSDRLIV 530
+T L H + D ++DR++V
Sbjct: 181 RTVLFATHYLEEADAIADRVLV 202
>sp|P45171|POTA_HAEIN SPERMIDINE/PUTRESCINE TRANSPORT ATP-BINDING PROTEIN POTA
>gi|1075318|pir||B64118 spermidine/putrescine transport
protein potA - Haemophilus influenzae (strain Rd KW20)
>gi|1574806|gb|AAC22991.1| (U32813)
spermidine/putrescine ABC transporter, ATP-binding
protein (potA) [Haemophilus influenzae Rd]
Length = 381
Score = 79.6 bits (193), Expect = 9e-14
Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 17/219 (7%)
Query: 328 RFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPG-EIRKGEVIGIVGPNGIGKTTFVK 386
R KL E ++ + ++E + K YGS + + I GE + I+GP+G GKTT ++
Sbjct: 5 RKPKLVEN-QLQNKPIIELRSIKKSYGSNTIINDFNLTINNGEFVTILGPSGCGKTTVLR 63
Query: 387 MLAGVEEPTEGKVEWD----LTVAYKPQYIKAEYEG-------TVYELLS-KIDSSKLNS 434
+LAG+EE G + D V + ++I ++ T++E ++ + K+ +
Sbjct: 64 LLAGLEELDSGSIILDGEDITNVPAEKRHINTVFQSYALFPHMTIFENVAFGLRMQKVPN 123
Query: 435 NFYKTELLKPLGIIDLY---DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 491
K +L+ L ++ L DR LSGG+ QR+AIA ++ + LLDE + LD +
Sbjct: 124 EEIKPRVLEALRMVQLEEMADRKPTQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYK 183
Query: 492 QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 530
R + + ++ L + T + V HD +SDR+++
Sbjct: 184 LRKQMQQELKMLQRQLGITFIFVTHDQEEAITMSDRIVL 222
>dbj|BAA08631.1| (D49826) LipB [Serratia marcescens]
Length = 588
Score = 79.6 bits (193), Expect = 9e-14
Identities = 57/196 (29%), Positives = 98/196 (49%), Gaps = 23/196 (11%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT-------------VAYKPQY 411
I+ G+V+GI+GP+ GK+T ++L G+ +EG V D + Y PQ
Sbjct: 355 IQPGDVLGIIGPSASGKSTLARLLVGIWPVSEGIVRLDNADIYQWNKDELGPYIGYLPQD 414
Query: 412 IKAEYEGTVYELLSK---IDSSKLN-----SNFYKTELLKPLGIIDLYDRNVEDLSGGEL 463
I+ + GT+ E +++ IDS K+ + ++ L P G + LSGG+
Sbjct: 415 IEL-FAGTIAENIARFNDIDSEKVIEAAKLAGVHELILRFPNGYDSVIGNGGAGLSGGQK 473
Query: 464 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 523
QR+ +A L D + +LDEP++ LD A+++AI L ++N KT +++ H ++
Sbjct: 474 QRIGLARALYGDPALVVLDEPNSNLDDAGEKALNQAIMFLKQRN-KTVVLITHRTNLLSM 532
Query: 524 VSDRLIVFEGEPGRHG 539
S L++ G G
Sbjct: 533 TSKLLLLVNGNVNAFG 548
>gi|11499468 daunorubicin resistance ATP-binding protein (drrA) [Archaeoglobus
fulgidus] >gi|7445660|pir||C69485 daunorubicin
resistance ATP-binding protein (drrA) homolog -
Archaeoglobus fulgidus >gi|2648659|gb|AAB89368.1|
(AE000972) daunorubicin resistance ATP-binding protein
(drrA) [Archaeoglobus fulgidus]
Length = 398
Score = 79.6 bits (193), Expect = 9e-14
Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 45/242 (18%)
Query: 344 VEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK---- 398
+E LVK +G F+ + ++++GE+ +GPNG GKTT V +L + +PT GK
Sbjct: 80 IEVENLVKKFGDFEAVRGVSFKVKRGEIFAFLGPNGAGKTTTVHILTTLLKPTSGKAFVA 139
Query: 399 -----------------------VEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSN 435
V+ DLT AY+ + G VY L K K+
Sbjct: 140 GLDVVREAREVRRRIGIVFQDPSVDRDLT-AYENMLV----HGGVYGLKGKELKEKIE-- 192
Query: 436 FYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 495
LLK + + + D+ V+ SGG +R+ IA +LL ++ LDEP+ LD + R
Sbjct: 193 ----RLLKFVELWEFRDKLVKYFSGGMQRRLEIARSLLHHPEVLFLDEPTIGLDPQTRAH 248
Query: 496 VSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFL 555
V I + E+ + T + H + + ++DR+ + + HGR + G E + R +
Sbjct: 249 VWSYIEAMKEEQDMTIFLTTHYMEEAEKLADRVAIID-----HGRIIAE-GSVEELKRLV 302
Query: 556 AS 557
S
Sbjct: 303 GS 304
>pir||A70158 ABC transporter, ATP-binding protein homolog - Lyme disease
spirochete >gi|2688376|gb|AAC66828.1| (AE001151) ABC
transporter, ATP-binding protein [Borrelia burgdorferi]
Length = 277
Score = 79.6 bits (193), Expect = 9e-14
Identities = 72/231 (31%), Positives = 106/231 (45%), Gaps = 24/231 (10%)
Query: 326 EIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIR--KGEVIGIVGPNGIGKTT 383
+I+ K S +D +++ ++K YG KL V I KGEV+G++GPNG GKTT
Sbjct: 22 KIKEIKESLNLDSVNNVVLKADNIIKKYGE-KLAVNGITINIYKGEVVGLLGPNGAGKTT 80
Query: 384 FVKMLAGVEEPTEGKV---EWDLT-----------VAYKPQYIKAEYEGTVYE-----LL 424
+ G +P GKV +++++ + Y PQ E TV E L
Sbjct: 81 TFYTIVGFIKPNAGKVLINDYNISSLNMYERARIGIVYLPQDASIFRELTVEENIMVALE 140
Query: 425 SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEP 484
+ D SK LLK I + + LSGGE +R IA L + LLDEP
Sbjct: 141 RREDLSKAERKIELVNLLKEFEIKRIQSQKAYTLSGGERRRAEIARALAVNPYFLLLDEP 200
Query: 485 SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGE 534
A +D + I+ L EKN L+ +H+V D + IV++G+
Sbjct: 201 FAGIDPIAIGDIKNIIKILKEKN-IGVLITDHNVRDAFDIIDRAYIVYQGQ 250
Score = 72.6 bits (175), Expect = 1e-11
Identities = 57/215 (26%), Positives = 104/215 (47%), Gaps = 17/215 (7%)
Query: 81 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 140
++ + +YG V + G VVG++GPNG GKTT + G + PN +
Sbjct: 43 DNIIKKYGEKLAVNGITINIYKGEVVGLLGPNGAGKTTTFYTIVGFIKPN------AGKV 96
Query: 141 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPK-AVKGKVRELLKKVDEVGKFEE-- 197
+I + + L N +ER + G V PQ + + V+ + L++ +++ K E
Sbjct: 97 LINDYNISSL-NMYERARIGI---VYLPQDASIFRELTVEENIMVALERREDLSKAERKI 152
Query: 198 ----VVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKV 253
++KE E++ + ++ + LSGGE +R IA AL +F DEP + +D +
Sbjct: 153 ELVNLLKEFEIKRIQSQKAYTLSGGERRRAEIARALAVNPYFLLLDEPFAGIDPIAIGDI 212
Query: 254 ARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVY 288
+I+ L + VL+ +H++ + D ++VY
Sbjct: 213 KNIIKILKEKNIGVLITDHNVRDAFDIIDRAYIVY 247
>pir||H72342 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4981229|gb|AAD35787.1|AE001742_2 (AE001742)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 228
Score = 79.6 bits (193), Expect = 9e-14
Identities = 70/214 (32%), Positives = 104/214 (47%), Gaps = 28/214 (13%)
Query: 341 ETLVEYPRLVKDY-GSFKLEVEPG---EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE 396
+ L+E L K+Y G K+ G I GE + I+GP+G GKTT + L+GV+ PT
Sbjct: 2 KALIEVHNLWKEYNGKEKVTALKGINLRINTGEFVVILGPSGSGKTTLLNCLSGVDRPTR 61
Query: 397 GKVEWDLTVAY-----KPQYIKAEYEGTVYE------LLSKIDSSKL----------NSN 435
G V T Y + +AE G V++ +L+ I++ +L +
Sbjct: 62 GTVIIHGTDLYTLSEEERTRFRAENMGFVFQFFNLVPVLTAIENVELPLLILGVNRKEAR 121
Query: 436 FYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 495
E+L+ +G+ DR E+LSGGE QRVAIA ++ + + DEP+ LD E
Sbjct: 122 ERAFEILRKVGLAHKCDRFPEELSGGEKQRVAIARAIVHNPKVIWADEPTGALDNETGRM 181
Query: 496 VSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 529
+ I LME E + LVV I +DR+I
Sbjct: 182 I---IDLLMEMKENSTLVVVTHDERIAEKADRVI 212
>emb|CAB88835.1| (AL353832) putative ABC-transport protein, ATP-binding component.
[Streptomyces coelicolor A3(2)]
Length = 354
Score = 79.6 bits (193), Expect = 9e-14
Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 23/205 (11%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYEL- 423
+ +GE++G +GPNG GK+T +KML G+ P+ G++ + + A G V+
Sbjct: 73 VSRGEMVGYIGPNGAGKSTTIKMLTGILTPSGGRLRVAGIDPSRERIRLAHRIGVVFGQR 132
Query: 424 ------LSKIDSSKLNSNFYKT----------ELLKPLGIIDLYDRNVEDLSGGELQRVA 467
L IDS +L Y+ ++ L + +L D V LS G+ R
Sbjct: 133 TTLWWDLPLIDSYRLMHRMYRIPDARYRENLDRCVELLQLQELLDVPVRQLSLGQRMRGD 192
Query: 468 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 527
IAA LL D ++ LDEP+ LDV + V + L + T L+ HD+ I+ + R
Sbjct: 193 IAAALLHDPEVLYLDEPTIGLDVVSKAKVRGFLLDLNAERGTTVLLTTHDLQDIEQLCSR 252
Query: 528 LIVFEGEPGRHGRALPPMGMREGMN 552
++V + HGR + G EG++
Sbjct: 253 VMVID-----HGRLMYD-GRLEGLH 271
>pir||G83358 probable ATP-binding component of ABC transporter PA2294 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9948325|gb|AAG05682.1|AE004655_4 (AE004655) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 284
Score = 79.6 bits (193), Expect = 9e-14
Identities = 57/186 (30%), Positives = 86/186 (45%), Gaps = 12/186 (6%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--LTVAYKPQYIKAEYEGTVY 421
E R GE + ++GP+G GK+T + LAG P+ G V D PQ + T++
Sbjct: 36 EARPGEFVCLLGPSGCGKSTLLGALAGHLRPSAGSVRVDGRSVEGPSPQRGMVFQQHTLF 95
Query: 422 ELLSKIDS----------SKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 471
D+ ++ N E+L +G+ D R LSGG QRV IA
Sbjct: 96 PWRRVRDNVAFGLKMQGLARAERNRRAMEMLGLVGLADFAGRWPGQLSGGMQQRVEIARV 155
Query: 472 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 531
L+ + L+DEP LD + RL + + + + T L V HD+ Y++DR++V
Sbjct: 156 LVNRPRLLLMDEPFGALDAQTRLKMQTLLLDVWARVRTTVLFVTHDIDEALYLADRVLVM 215
Query: 532 EGEPGR 537
PGR
Sbjct: 216 SPRPGR 221
>dbj|BAB07011.1| (AP001518) ferrichrome ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 261
Score = 79.6 bits (193), Expect = 9e-14
Identities = 67/212 (31%), Positives = 99/212 (46%), Gaps = 31/212 (14%)
Query: 354 GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------------E 400
GSF+L+ I KG++ IVGPNG GK+T +K+++ + + G V +
Sbjct: 15 GSFQLDHLEIAIPKGKITAIVGPNGSGKSTLLKIISRLLKQDVGDVRIEAMSTANMQPKD 74
Query: 401 WDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY--------- 451
+ +A PQ +A TV EL++ S F + + II+
Sbjct: 75 FAQKLAMMPQSKQALPNLTVEELIA-YGRSPYQKWFQAKKSEEDQSIIEWAMTVTGTKKH 133
Query: 452 -DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 510
+R LSGGE Q+V IA L + DI LLDEP+ YLD+ +L V + + EK T
Sbjct: 134 ANRMFHTLSGGEQQKVRIALALAQKTDILLLDEPTTYLDIAHQLDVMEMLEEINEKYSIT 193
Query: 511 ALVVEHDVLMIDYVSDRLI-------VFEGEP 535
++V H++ D LI V EGEP
Sbjct: 194 VVMVLHELQQAAAYCDHLIAMKKGAVVAEGEP 225
>dbj|BAA77930.1| (D83536) Hypothetical ABC transporter ATP-binding protein in
thrW-argF intergenic region. [Escherichia coli]
Length = 348
Score = 79.2 bits (192), Expect = 1e-13
Identities = 63/215 (29%), Positives = 112/215 (51%), Gaps = 30/215 (13%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------------EWDLTVAYK--- 408
I +G+++ ++GP+G GKTT ++++AG+E+P+EG++ + D+ + ++
Sbjct: 29 IPQGQMVTLLGPSGCGKTTILRLVAGLEKPSEGQIFIDGEDVTHRSIQQRDICMVFQSYA 88
Query: 409 --PQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL---YDRNVEDLSGGEL 463
P E G ++L + ++L K + + L ++DL DR V+ +SGG+
Sbjct: 89 LFPHMSLGENVGYGLKMLG-VPRAEL-----KARVKEALAMVDLEGFEDRFVDQISGGQQ 142
Query: 464 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 523
QRVA L+ + L DEP + LD R ++ IR L ++ + T+L V HD
Sbjct: 143 QRVAWPRALILKPKVLLFDEPLSNLDANLRRSMRDKIRELQKQFDITSLYVTHDQSEAFA 202
Query: 524 VSDRLIVF-EGEPGRHGRALPPMGMREGMNRFLAS 557
VSD ++V +G + G P R+ +RF+AS
Sbjct: 203 VSDTVLVMNKGHIMQIGS--PQDLYRQPASRFMAS 235
>sp|P30293|LIVG_SALTY HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING
PROTEIN LIVG (LIV-I PROTEIN G) >gi|79077|pir||JH0670
high-affinity branched-chain amino acid transport LIV-I
system LivF protein - Salmonella typhimurium
>gi|217074|dbj|BAA02131.1| (D12589) LivF protein
[Salmonella typhimurium]
Length = 255
Score = 79.2 bits (192), Expect = 1e-13
Identities = 54/210 (25%), Positives = 99/210 (46%), Gaps = 34/210 (16%)
Query: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--------------LTVAYKP 409
E+R+ E++ ++GPNG GKTT L G +PT G + + V
Sbjct: 27 ELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTITLRERHLEGLPGQQIARMGVVRTF 86
Query: 410 QYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP-------------------LGIIDL 450
Q+++ E TV E L +L + + L P +G+++
Sbjct: 87 QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAQSEALDRAATWLERIGLLEH 146
Query: 451 YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 510
+R +L+ G+ +R+ IA ++ +I +LDEP+A L+ ++ + I L + T
Sbjct: 147 ANRQASNLAYGDQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNHHNTT 206
Query: 511 ALVVEHDVLMIDYVSDRL-IVFEGEPGRHG 539
L++EHD+ ++ +SDR+ +V +G P +G
Sbjct: 207 ILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
>sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF
>gi|1074010|pir||E64188 dipeptide transport ATP-binding
protein dppF - Haemophilus influenzae (strain Rd KW20)
>gi|972898|gb|AAA95975.1| (U17295) DppF [Haemophilus
influenzae] >gi|1574111|gb|AAC22837.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppF)
[Haemophilus influenzae Rd]
Length = 327
Score = 79.2 bits (192), Expect = 1e-13
Identities = 56/217 (25%), Positives = 110/217 (49%), Gaps = 33/217 (15%)
Query: 340 RETLVEYPRLVK--DYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 397
++ L P+ VK D SF+LE +G+ + +VG +G GK+T ++L +EEPT+G
Sbjct: 24 KKGLFAKPQQVKALDGVSFQLE-------RGKTLAVVGESGCGKSTLGRLLTMIEEPTKG 76
Query: 398 KVEWD------------------LTVAYKPQYIKAEYEGTVYELLSK--IDSSKLNSNFY 437
++ + + + ++ Y + +L + I ++KL++
Sbjct: 77 ELYYKGHNFLENDSETKALRRKKIQIVFQNPYASLNPRKKIGSILEEPLIINTKLSAKER 136
Query: 438 KTELLKPLGIIDL----YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 493
+ ++L + + L YDR SGG+ QR+AIA L+ D D+ + DEP + LDV R
Sbjct: 137 REKVLSMMEKVGLRAEFYDRYPHMFSGGQRQRIAIARGLMLDPDVVVADEPVSALDVSVR 196
Query: 494 LAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 530
V + L ++ + + + HD+ ++++++D ++V
Sbjct: 197 AQVLNLMMDLQDELGLSYVFISHDLSVVEHIADEVMV 233
Score = 70.6 bits (170), Expect = 5e-11
Identities = 52/195 (26%), Positives = 96/195 (48%), Gaps = 15/195 (7%)
Query: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 162
G + +VG +G GK+T ++L + E+ + + E + + L+ +I
Sbjct: 47 GKTLAVVGESGCGKSTLGRLLT------MIEEPTKGELYYKGHNFLENDSETKALRRKKI 100
Query: 163 RPVVKPQYVDLLPKAVKGKVRE----LLKKVDEVGKFEEVVKELELENV----LDRELHQ 214
+ V + Y L P+ G + E + K+ + E+V+ +E + DR H
Sbjct: 101 QIVFQNPYASLNPRKKIGSILEEPLIINTKLSAKERREKVLSMMEKVGLRAEFYDRYPHM 160
Query: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHD 273
SGG+ QR+AIA L+ DEP S LD+ R +V ++ L +E G + + + HD
Sbjct: 161 FSGGQRQRIAIARGLMLDPDVVVADEPVSALDVSVRAQVLNLMMDLQDELGLSYVFISHD 220
Query: 274 LAVLDYLSDVIHVVY 288
L+V+++++D + V+Y
Sbjct: 221 LSVVEHIADEVMVMY 235
>pir||F72405 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4980701|gb|AAD35296.1|AE001705_7 (AE001705)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 233
Score = 79.2 bits (192), Expect = 1e-13
Identities = 62/203 (30%), Positives = 107/203 (52%), Gaps = 11/203 (5%)
Query: 339 ERETLVEYPRLVKDYGSFKLEVEPG-EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 397
E E +++ L KD+ K+ G + KGE + ++GP+G GKTTF+++++G+E+ +G
Sbjct: 3 EVEVILKVEGLRKDFNGVKVIENWGFSVGKGERVALLGPSGCGKTTFLRIVSGLED-YQG 61
Query: 398 KVE-WDLTVAYKPQYIKAEYEGTVYE--LLSKIDSSKLNSNFYKTELLKPLGIIDLYDRN 454
KV+ + + Y Q + T+ E +L + D+ ++ S K EL G + Y
Sbjct: 62 KVKVFTDKIGYVFQEPRLIPWKTITENLMLIRRDTDRIASLLEKVELK---GFENHYPWQ 118
Query: 455 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 514
LS G QRV LL D D+ LLDEP LD++ ++ V + L +K + + V
Sbjct: 119 ---LSEGMKQRVNFVRALLVDPDLLLLDEPFDALDLKTKMKVMDLLVDLWQKRRFSIVFV 175
Query: 515 EHDVLMIDYVSDRLIVFEGEPGR 537
H+V ++S+R+ + G P +
Sbjct: 176 THNVKEAVFLSERIFLLSGRPSK 198
>pir||D72257 hypothetical protein TM1403 - Thermotoga maritima (strain MSB8)
>gi|4981967|gb|AAD36474.1|AE001793_4 (AE001793)
antibiotic ABC transporter, ATP-binding protein,
putative [Thermotoga maritima]
Length = 327
Score = 79.2 bits (192), Expect = 1e-13
Identities = 59/223 (26%), Positives = 108/223 (47%), Gaps = 30/223 (13%)
Query: 341 ETLVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK- 398
E ++ LVK +G F+ ++ ++KGE+ +GPNG GKTT + ML + +PT GK
Sbjct: 2 EDIIVVENLVKKFGDFEAVKGVSFSVKKGEIFAFLGPNGAGKTTTIHMLTTLLKPTSGKA 61
Query: 399 -------------VEWDLTVAYKPQYIKAEYEGTVYELL---SKI---DSSKLNSNFYKT 439
V + + ++ Q + E T YE + KI KL
Sbjct: 62 WVAGHDVLKEPREVRRKIGIVFQDQSLDREL--TAYENMYIHGKIYGYGGEKLKKRIL-- 117
Query: 440 ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 499
ELL+ + +++ D+ V+ SGG +R+ IA +L+ + ++ LDEP+ LD R +
Sbjct: 118 ELLEFVELLEFKDKPVKTFSGGMARRLEIARSLIHEPEVLFLDEPTIGLDPHTRAHMWEY 177
Query: 500 IRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRAL 542
I + +++ T + H + + ++DR+ + + HG+ +
Sbjct: 178 ISKMKKEHNMTIFLTTHYMDEAEQLADRVAIID-----HGKII 215
>pir||G75200 cobalt abc transporter, ATP-binding protein (cbio) PAB2260 -
Pyrococcus abyssi (strain Orsay)
>gi|5457563|emb|CAB49054.1| (AJ248283) cobalt ABC
transporter, ATP-binding protein (cbiO) [Pyrococcus
abyssi]
Length = 260
Score = 79.2 bits (192), Expect = 1e-13
Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 27/221 (12%)
Query: 87 YGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN----LCEDNDSWDNVI 142
Y +VL + G + IVGPNG+GKTT VK++ G L P + + ++ D +
Sbjct: 11 YDDGKYVLKSINFRFKGGTLAIVGPNGSGKTTLVKMMNGLLKPKKGDVIIDGINTRDKSV 70
Query: 143 RAFR---GNELQN----YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKF 195
G QN +FE E+ P+ + L + V+ +VR L++V
Sbjct: 71 AEMSRLVGYVFQNPDAMFFEENVFKEV--AFGPRNLGLSEEEVEKRVRWALREVG----- 123
Query: 196 EEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR 255
LE DR +LSGGE QR+AIA L K + DEP++ LD R +
Sbjct: 124 --------LEGFEDRSPLELSGGEKQRLAIACILAMKPKYLVLDEPNTGLDERGLRGLIN 175
Query: 256 VIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEPGVYG 295
VIR+L + ++++V HD+ VL+ +V+ + GE +G
Sbjct: 176 VIRKLREDNHSIILVTHDMELVLEVADEVLLLKDGEIKFFG 216
Score = 76.5 bits (185), Expect = 8e-13
Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 18/186 (9%)
Query: 367 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV------EWDLTVAYKPQ---YIKAEYE 417
KG + IVGPNG GKTT VKM+ G+ +P +G V D +VA + Y+ +
Sbjct: 26 KGGTLAIVGPNGSGKTTLVKMMNGLLKPKKGDVIIDGINTRDKSVAEMSRLVGYVFQNPD 85
Query: 418 GTVYE--LLSKIDSSKLNSNFYKTEL-------LKPLGIIDLYDRNVEDLSGGELQRVAI 468
+E + ++ N + E+ L+ +G+ DR+ +LSGGE QR+AI
Sbjct: 86 AMFFEENVFKEVAFGPRNLGLSEEEVEKRVRWALREVGLEGFEDRSPLELSGGEKQRLAI 145
Query: 469 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 528
A L +LDEP+ LD + IR L E N LV L+++ + L
Sbjct: 146 ACILAMKPKYLVLDEPNTGLDERGLRGLINVIRKLREDNHSIILVTHDMELVLEVADEVL 205
Query: 529 IVFEGE 534
++ +GE
Sbjct: 206 LLKDGE 211
>pir||D83215 probable ATP-binding component of ABC transporter PA3447 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9949588|gb|AAG06835.1|AE004765_8 (AE004765) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 249
Score = 79.2 bits (192), Expect = 1e-13
Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 16/209 (7%)
Query: 343 LVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW 401
L++ + K YG + LE + GEV+ ++GP+G GK+T +++ AG+++ +G VE
Sbjct: 4 LLDLLEIRKAYGDTRVLEGVALSLAPGEVVSLLGPSGCGKSTLLRIAAGLDDDFQGTVER 63
Query: 402 DLTVAYKPQYIKAEYEG--------------TVYELLSKIDSSKLNSNFYKTELLKPLGI 447
+ + + P G TV + + D L + LL +G+
Sbjct: 64 NPILGFGPDGENGRSGGIGVVFQEPRLLPWLTVAQNVGFADGW-LEDEHWVERLLADVGL 122
Query: 448 IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN 507
+ LSGG QR AIA L + LLDEP + +D R+ + ++ +++
Sbjct: 123 AGCGGLLPKQLSGGMAQRAAIARGLYGRPQVLLLDEPFSAVDAFTRMRLQDLLQDVVQNY 182
Query: 508 EKTALVVEHDVLMIDYVSDRLIVFEGEPG 536
E + L+V HD+ Y++DR+++ G PG
Sbjct: 183 EISVLLVTHDLDEAFYLADRVLLMGGRPG 211
>sp|P50332|NODI_RHIGA NODULATION ATP-BINDING PROTEIN I >gi|1001916|emb|CAA60881.1|
(X87578) nodI [Rhizobium galegae]
Length = 347
Score = 79.2 bits (192), Expect = 1e-13
Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 26/230 (11%)
Query: 336 VDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 395
+D++ T++ + V D SF +R GE G++GPNG GK+T +ML G+ P+
Sbjct: 49 IDLQAVTMIYRDKTVVDSLSFG-------VRAGECFGLLGPNGAGKSTITRMLLGMATPS 101
Query: 396 EGKVE------------WDLTVAYKPQYIKAEYEGTVYELL----SKIDSSKLNSNFYKT 439
GK+ ++ Q+ + E TV E L S
Sbjct: 102 AGKISVLGLPVPGKARLARASIGVVSQFDNLDMEFTVRENLLVFGRYFQMSTRAIEKLIP 161
Query: 440 ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 499
LL+ + D V DLSGG +R+ +A L+ D + +LDEP+ LD R +
Sbjct: 162 SLLEFAQLEAKADVRVSDLSGGMKRRLTLARALVNDPQLLILDEPTTGLDPPARHQIWER 221
Query: 500 IRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 549
+R L+ + KT L+ H + + + DRL V EG GR PP+ + E
Sbjct: 222 LRSLLIRG-KTILLTTHMMDEAERMCDRLCVLEG--GRMIAEGPPLSLIE 268
>pir||C65145 nikE protein - Escherichia coli >gi|466616|gb|AAB18455.1| (U00039)
nikE [Escherichia coli] >gi|1789891|gb|AAC76505.1|
(AE000423) ATP-binding protein of nickel transport
system [Escherichia coli K12]
Length = 268
Score = 78.8 bits (191), Expect = 2e-13
Identities = 47/192 (24%), Positives = 92/192 (47%), Gaps = 24/192 (12%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------------------DLTVA 406
++ GE + ++G +G GK+T ++L G+E P +G + W D+ +
Sbjct: 35 LKSGETVALLGRSGCGKSTLARLLVGLESPAQGNISWRGEPLAKLNRAQRKAFRRDIQMV 94
Query: 407 YKPQYIKAEYEGTVYELLSK-----IDSSKLNSNFYKTELLKPLGIID-LYDRNVEDLSG 460
++ TV E+L + + K +E+LK + + D + D+ LSG
Sbjct: 95 FQDSISAVNPRKTVREILREPMRHLLSLKKSEQLARASEMLKAVDLDDSVLDKRPPQLSG 154
Query: 461 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 520
G+LQRV +A L + + +LDE + LD+ + V R ++ L ++ L + HD+ +
Sbjct: 155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRL 214
Query: 521 IDYVSDRLIVFE 532
++ R++V +
Sbjct: 215 VERFCQRVMVMD 226
Score = 76.5 bits (185), Expect = 8e-13
Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 15/188 (7%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
+K G V ++G +G GK+T ++L G P + N SW A + F R
Sbjct: 35 LKSGETVALLGRSGCGKSTLARLLVGLESP--AQGNISWRGEPLAKLNRAQRKAFRR--- 89
Query: 160 GEIRPVVKPQYVDLLP-KAVKGKVRE------LLKKVDEVGKFEEVVKELELEN-VLDRE 211
+I+ V + + P K V+ +RE LKK +++ + E++K ++L++ VLD+
Sbjct: 90 -DIQMVFQDSISAVNPRKTVREILREPMRHLLSLKKSEQLARASEMLKAVDLDDSVLDKR 148
Query: 212 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVV 270
QLSGG+LQRV +A AL + DE S LD+ + V R++++L + G A L +
Sbjct: 149 PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFI 208
Query: 271 EHDLAVLD 278
HDL +++
Sbjct: 209 THDLRLVE 216
>pir||D75142 oligopeptide transport ATP-binding protein appf PAB0631 -
Pyrococcus abyssi (strain Orsay)
>gi|5458364|emb|CAB49853.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 78.8 bits (191), Expect = 2e-13
Identities = 64/204 (31%), Positives = 100/204 (48%), Gaps = 24/204 (11%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN----LCEDNDSWDNVIRAFRGNELQNYFE 155
+ +G +V +VG +G+GKTT K++ L P L E D I F EL+ Y+
Sbjct: 32 INEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKD-----IMKFSKKELKTYYY 86
Query: 156 RLKNGEIRPVVKPQYVDLLPKAVKGKVRELL--KKVDEVGKFEE---VVKELELENVLDR 210
R +++ V + + P KV ++ ++G+ E + K LE +
Sbjct: 87 R----KVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEVGLNPS 142
Query: 211 EL-----HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-G 264
E+ HQLSGG+LQR+ IA ALL K DE S LD R+ V ++ ++ G
Sbjct: 143 EVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYG 202
Query: 265 KAVLVVEHDLAVLDYLSDVIHVVY 288
+VL + HDLA+ Y+SD ++Y
Sbjct: 203 TSVLFITHDLALGYYISDSTIIMY 226
>gb|AAD56937.1|AF180520_2 (AF180520) ATP-binding protein MtsB [Streptococcus pyogenes]
Length = 241
Score = 78.8 bits (191), Expect = 2e-13
Identities = 60/196 (30%), Positives = 99/196 (49%), Gaps = 18/196 (9%)
Query: 352 DYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVEWDL--T 404
D S LE I ++GI+GPNG GK+TF+K + + + +GK L T
Sbjct: 12 DGNSNALEAINVTIEGPSIVGIIGPNGAGKSTFMKAILNLIDYQGHVTVDGKDGRKLGHT 71
Query: 405 VAYKPQYIKAEYEG--TVYELLSKIDSSKLN-------SNFYKTE-LLKPLGIIDLYDRN 454
VAY Q +Y TV E ++ SKL F + + +LK +G+ D R
Sbjct: 72 VAYVEQRSMIDYNFPITVKECVALGTYSKLGLFRRVGKKQFEQVDKVLKQVGLEDFGHRP 131
Query: 455 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 514
++ LSGG+ QR+ +A L++++D LDEP +D + ++ L + KT L+V
Sbjct: 132 IKSLSGGQFQRMLVARCLIQESDYIFLDEPFVGIDSVSEKIIVDLLKEL-KMAGKTILIV 190
Query: 515 EHDVLMIDYVSDRLIV 530
HD+ +++ D+L++
Sbjct: 191 HHDLSKVEHYFDKLMI 206
Score = 76.1 bits (184), Expect = 1e-12
Identities = 55/210 (26%), Positives = 105/210 (49%), Gaps = 6/210 (2%)
Query: 87 YGVNAFVLYRLPIVKDG-MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 145
Y N+ L + + +G +VGI+GPNG GK+T +K + + + + + D
Sbjct: 11 YDGNSNALEAINVTIEGPSIVGIIGPNGAGKSTFMKAILNLID---YQGHVTVDGKDGRK 67
Query: 146 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELE 205
G+ + +R P+ + V L + G R + KK E + ++V+K++ LE
Sbjct: 68 LGHTVAYVEQRSMIDYNFPITVKECVALGTYSKLGLFRRVGKKQFE--QVDKVLKQVGLE 125
Query: 206 NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK 265
+ R + LSGG+ QR+ +A L++++ + F DEP +D + +++ L GK
Sbjct: 126 DFGHRPIKSLSGGQFQRMLVARCLIQESDYIFLDEPFVGIDSVSEKIIVDLLKELKMAGK 185
Query: 266 AVLVVEHDLAVLDYLSDVIHVVYGEPGVYG 295
+L+V HDL+ +++ D + ++ YG
Sbjct: 186 TILIVHHDLSKVEHYFDKLMILNKHLVAYG 215
>dbj|BAB07224.1| (AP001519) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 228
Score = 78.8 bits (191), Expect = 2e-13
Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 19/201 (9%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN------LCEDNDSWDNVIRAFRGNELQNY 153
+K+G V I G +G+GKTT + IL P ED ++ +A NE+ +
Sbjct: 28 IKEGEFVAITGTSGSGKTTLLNILGCLDDPTSGKYSLTGEDVSQYNKTKKALLRNEMIGF 87
Query: 154 ----FERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD 209
F +++ ++ V +LP VR KK + K EE++ +L + +
Sbjct: 88 VLQDFALVEHYTVKQNV------MLPLMY---VRGNKKKKERQQKIEELLSKLGIAHKEK 138
Query: 210 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 269
LSGG+ QRVAI AL+ + DEP+ LD + ++ ++ +L EGK V++
Sbjct: 139 ERTALLSGGQKQRVAIGRALINEPRLILADEPTGALDQKTSKEIMEILNKLHKEGKTVII 198
Query: 270 VEHDLAVLDYLSDVIHVVYGE 290
V HD V DY +I + G+
Sbjct: 199 VTHDPFVADYCDRIIQLEDGK 219
Score = 74.9 bits (181), Expect = 2e-12
Identities = 59/193 (30%), Positives = 86/193 (43%), Gaps = 29/193 (15%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKA-------EYE 417
I++GE + I G +G GKTT + +L +++PT GK + LT QY K E
Sbjct: 28 IKEGEFVAITGTSGSGKTTLLNILGCLDDPTSGK--YSLTGEDVSQYNKTKKALLRNEMI 85
Query: 418 GTVYELLSKIDSSKLNSNFYKT------------------ELLKPLGIIDLYDRNVEDLS 459
G V + + ++ + N ELL LGI LS
Sbjct: 86 GFVLQDFALVEHYTVKQNVMLPLMYVRGNKKKKERQQKIEELLSKLGIAHKEKERTALLS 145
Query: 460 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 519
GG+ QRVAI L+ + + L DEP+ LD + + + L K KT ++V HD
Sbjct: 146 GGQKQRVAIGRALINEPRLILADEPTGALDQKTSKEIMEILNKL-HKEGKTVIIVTHDPF 204
Query: 520 MIDYVSDRLIVFE 532
+ DY DR+I E
Sbjct: 205 VADY-CDRIIQLE 216
>gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (dppF-1) [Sulfolobus
solfataricus]
Length = 325
Score = 78.4 bits (190), Expect = 2e-13
Identities = 66/264 (25%), Positives = 139/264 (52%), Gaps = 28/264 (10%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIP---NLCEDNDSWDNVIRAFRGNELQNYFER 156
+K+ ++G+VG +G+GKTT ++ G P N+ D+ + + + ++ NY +
Sbjct: 46 IKEREIMGVVGESGSGKTTLGRVTIGLQKPTSGNVYIKADNKEINVNKAKLKDISNYVQM 105
Query: 157 LKN---GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELH 213
+ I P+++ V P K K+ ++ KK++E + ++ EL L+ ++
Sbjct: 106 IYQDPYSSIDPIMRVYDVLATPLKYK-KMSDIDKKIEEAMRLVDLPLEL-----LENRVY 159
Query: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR-RLANEGKAVLVVEH 272
QLSGG+ QR++IA A++ + DEP++ LD + ++ ++I+ ++G + + + H
Sbjct: 160 QLSGGQRQRLSIARAIVVNPKYIVADEPTTMLDASLKGEILKIIKDARESKGFSFMYITH 219
Query: 273 DLAVLDYLSDVIHVVY-GEPGVYGIFSKPKGTRNGINEFLQGYLK-----DENVRFRPYE 326
+L + +SD I V+Y G+ + + + + +N ++ + QG ++ D ++R + E
Sbjct: 220 ELPIAKIISDRIIVLYLGK--IVELGNSNEIIKNPLHPYTQGLIEVYPRIDPSLRDKIKE 277
Query: 327 IRFTKLSERVDVER--ETLVEYPR 348
I+ +VD+ R + V YPR
Sbjct: 278 IKI-----KVDIVRPDKGCVFYPR 296
>gb|AAK43145.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 267
Score = 78.4 bits (190), Expect = 2e-13
Identities = 68/241 (28%), Positives = 111/241 (45%), Gaps = 47/241 (19%)
Query: 341 ETLVEYPRLVKDY----GSFKLEVEPG------EIRKGEVIGIVGPNGIGKTTFVKMLAG 390
+ L+E + KD+ G F E PG +IRK E++G+VG +G GKT M+ G
Sbjct: 3 DKLIELIHVYKDFIVRKGVFGKEHRPGIWDVNMDIRKNEIVGMVGGSGGGKTVIAWMIVG 62
Query: 391 VEEPTEGKVEW-----DLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL 445
+ +PT+G + + D+T A K Q +Y V + SS ++ K + +PL
Sbjct: 63 LLKPTKGSIIYTPMGLDVTKANKKQL--KQYRADVQLVFQDPYSSLDPAHTVKWHIERPL 120
Query: 446 GII----DLYDRNVE-------------------DLSGGELQRVAIAATLLRDADIYLLD 482
I D+ +R E LSGG+ QRV +A L + + + D
Sbjct: 121 KIYKYRGDIEERIKELLREVALTPPEDFLNKYPFQLSGGQRQRVYLARVLALNPKVLIAD 180
Query: 483 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL-------IVFEGEP 535
EP + +D R ++ + L ++ + + + HD+ I YV+DR+ IV EG+
Sbjct: 181 EPVSNVDASIRASLLDLFKRLRDEKGISIMYITHDIATIGYVADRVYVVKNGRIVEEGDV 240
Query: 536 G 536
G
Sbjct: 241 G 241
>pir||E70394 ABC transporter (hlyB subfamily) - Aquifex aeolicus
>gi|2983577|gb|AAC07149.1| (AE000723) ABC transporter
(hlyB subfamily) [Aquifex aeolicus]
Length = 564
Score = 78.4 bits (190), Expect = 2e-13
Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 38/252 (15%)
Query: 326 EIRFTKLSERVDV---ERETLVEYPRLVKDYGSFKLEVEPGE------------IRKGEV 370
++ +T+L+E + +RE V+ P + + V P E I GE
Sbjct: 302 KVAYTRLNEFLKFLRFKREVSVKLPEPKGEIELSNVVVVPPEGKTPVLRNINMRILPGEF 361
Query: 371 IGIVGPNGIGKTTFVKMLAGVEEPTEGKVE--------WDLT-----VAYKPQYIKAEYE 417
+ I+GP+G GK++ V+ + G+ P G VE WD V Y PQ I+ +E
Sbjct: 362 VAIIGPSGSGKSSLVRTILGIWLPVHGTVEIDGADLKQWDRDYFGKFVGYLPQDIEL-FE 420
Query: 418 GTVYELLSK---IDSSKLN-----SNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIA 469
GTV E +++ +DS K+ S + + P G LSGG+ QR+A+A
Sbjct: 421 GTVAENIARFGELDSEKIIEAAKLSGAHDVIIKLPDGYDTYIGPGGITLSGGQRQRIALA 480
Query: 470 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 529
L + I +LDEP + LD + A+ A+ L +K + T ++V H + +++ V I
Sbjct: 481 RALYGNPRIVILDEPDSNLDEQGEQALYNALIEL-KKRKVTTIIVSHRIRLLNLVDKIAI 539
Query: 530 VFEGEPGRHGRA 541
+ +G G+A
Sbjct: 540 MQDGTLKAFGKA 551
>pir||B71030 probable ATP-binding transport protein - Pyrococcus horikoshii
>gi|3257959|dbj|BAA30642.1| (AP000006) 226aa long
hypothetical ATP-binding transport protein [Pyrococcus
horikoshii]
Length = 226
Score = 78.4 bits (190), Expect = 2e-13
Identities = 57/186 (30%), Positives = 95/186 (50%), Gaps = 29/186 (15%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE---WDLT---------VAYKPQYI 412
I +GE+ G++GPNG GK+T +K+LA + PT GK E +D+ ++Y P+
Sbjct: 11 IEEGEIFGLIGPNGAGKSTTLKILATLLRPTGGKAEVFGFDVVKEADEVRKLISYLPE-- 68
Query: 413 KAEYEGTVYELLSKIDSSKLNSNFY-----KTELLKPLGI--IDLYDR---NVEDLSGGE 462
E Y+ L+ ++ K + Y K E + LGI L DR + S G
Sbjct: 69 ----EAGAYKRLTGLEYLKFMAKLYAKDSRKAEKMLKLGIELSGLGDRLRDKISTYSKGM 124
Query: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 522
++R+ +A L+ + +LDEP++ LD+ + R IR K T L+ H++L ++
Sbjct: 125 VRRLLLARALMVKPKLAILDEPTSGLDIMNAFEIRRIIRE-FSKEGVTFLISSHNMLEVE 183
Query: 523 YVSDRL 528
Y+ DR+
Sbjct: 184 YLCDRV 189
Score = 76.5 bits (185), Expect = 8e-13
Identities = 55/194 (28%), Positives = 100/194 (51%), Gaps = 16/194 (8%)
Query: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE-DNDSWDNVIRAFRGNELQNYFERLK 158
+++G + G++GPNG GK+T +KILA L P + + +D V A +L +Y +
Sbjct: 11 IEEGEIFGLIGPNGAGKSTTLKILATLLRPTGGKAEVFGFDVVKEADEVRKLISYLPE-E 69
Query: 159 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVK-ELELENVLDR---ELHQ 214
G + + +Y+ + K R K E+++K +EL + DR ++
Sbjct: 70 AGAYKRLTGLEYLKFMAKLYAKDSR----------KAEKMLKLGIELSGLGDRLRDKIST 119
Query: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
S G ++R+ +A AL+ K DEP+S LDI ++ R+IR + EG L+ H++
Sbjct: 120 YSKGMVRRLLLARALMVKPKLAILDEPTSGLDIMNAFEIRRIIREFSKEGVTFLISSHNM 179
Query: 275 AVLDYLSDVIHVVY 288
++YL D + +++
Sbjct: 180 LEVEYLCDRVALIH 193
>gb|AAC27495.1| (AF077856) PotA [Actinobacillus actinomycetemcomitans]
Length = 372
Score = 78.4 bits (190), Expect = 2e-13
Identities = 56/211 (26%), Positives = 105/211 (49%), Gaps = 20/211 (9%)
Query: 338 VERETLVEYPRLVKDYGSFKLEVEPG-EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE 396
V+ + ++E + K YGS + + I GE + I+GP+G GKTT +++LAG+EE
Sbjct: 5 VQNKPIIELRSITKSYGSNTIIKDFNLTINNGEFLTILGPSGCGKTTVLRLLAGLEELDS 64
Query: 397 GKVEWD----LTVAYKPQYIKAEYEG-------TVYE------LLSKIDSSKLNSNFYKT 439
G + D V + +++ ++ T++E + K+ +++
Sbjct: 65 GNIILDGEDITNVPAEKRHVNTVFQSYALFPHMTIFENVAFGLRMQKVPEAEIKPRVL-- 122
Query: 440 ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 499
E L+ + + ++ DR LSGG+ QR+AIA ++ + LLDE + LD + R +
Sbjct: 123 EALRMVQLEEMADRKPTQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQYE 182
Query: 500 IRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 530
++ L + T + V HD +SDR+++
Sbjct: 183 LKVLQRQLGITFIFVTHDQEEAITMSDRIVL 213
>pir||F71654 ABC transporter ATP-binding protein (abcT2) RP508 - Rickettsia
prowazekii >gi|3861060|emb|CAA14960.1| (AJ235272) ABC
TRANSPORTER ATP-BINDING PROTEIN (abcT2) [Rickettsia
prowazekii]
Length = 254
Score = 78.4 bits (190), Expect = 2e-13
Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 20/196 (10%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-DLTVAYKPQYIKAE-------Y 416
I++GE++G+ GPNG GKTT ++ G+ P G++ D+ + P Y++A
Sbjct: 40 IKQGEIVGLFGPNGAGKTTCFNIIIGLMRPDSGQLLLNDINITNLPIYLRARLGIGYLLQ 99
Query: 417 EGTVYELLSKIDSSKLNSNFYKTE----------LLKPLGIIDLYDRNVEDLSGGELQRV 466
E +++ LS D+ K + + LL+ I+ L D + LSGGE +R+
Sbjct: 100 EPSIFRGLSVADNIKAVVEISENDKEVIEQKTHNLLEKFSIVHLKDLSSASLSGGERRRL 159
Query: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVS 525
IA + + + +LDEP A +D + + I +L E N L+ +H+V +D V
Sbjct: 160 EIARSFVIEPKFIMLDEPLAGIDPLAISDIKKLITYLREFN-IGILITDHNVRDTLDIVD 218
Query: 526 DRLIVFEGEPGRHGRA 541
++FEG+ G A
Sbjct: 219 RAYVIFEGKVLLEGSA 234
>pir||T03550 ATP-binding transport protein polk - Rhodobacter capsulatus
>gi|3128351|gb|AAC16203.1| (AF010496) ATP-binding
transport protein polk [Rhodobacter capsulatus]
Length = 332
Score = 78.0 bits (189), Expect = 3e-13
Identities = 63/234 (26%), Positives = 111/234 (46%), Gaps = 24/234 (10%)
Query: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTVAYKPQY 411
I GE + VGP+G GK+T ++++AG+E+ + G VE D L + ++ Y
Sbjct: 26 INDGEFVVFVGPSGCGKSTLLRLIAGLEDVSGGVVEIDGKDATATAPADRGLAMVFQ-SY 84
Query: 412 IKAEYEGTVYELLSKIDSSKLNSNFYKTEL---LKPLGIIDLYDRNVEDLSGGELQRVAI 468
+ + + +KL + + ++ K L + DR LSGG+ QRVAI
Sbjct: 85 ALYPHMSVKKNIAFPLKMAKLPAAEIEAKVQAAAKVLNLTAYLDRKPGQLSGGQRQRVAI 144
Query: 469 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 528
++R+ +L DEP + LD R+ + I L + T + V HD + ++D++
Sbjct: 145 GRAIVRNPQAFLFDEPLSNLDAALRVNMRLEISELHHSLKTTMIYVTHDQVEAMTMADKI 204
Query: 529 IVFEGEPGRHGRALPPMGM-REGMNRFLA----SVGITFRRDPDSGRPRANKEG 577
+V + GR + P+ + R NRF+A S + F P++ + A+ G
Sbjct: 205 VVLQA--GRIEQVGSPLELYRTPRNRFVAGFIGSPKMNFLEGPEAAKQGAHAIG 256
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.141 0.410
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230503718
Number of Sequences: 2977
Number of extensions: 10518143
Number of successful extensions: 51056
Number of sequences better than 1.0e-10: 651
Number of HSP's better than 0.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 624
Number of HSP's that attempted gapping in prelim test: 48596
Number of HSP's gapped (non-prelim): 1909
length of query: 593
length of database: 189,106,746
effective HSP length: 56
effective length of query: 537
effective length of database: 155,591,474
effective search space: 83552621538
effective search space used: 83552621538
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 168 (69.9 bits)