BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0826 (PAB0826) DE:Hypothetical protein
(285 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75032 hypothetical protein PAB0826 - Pyrococcus abyssi (st... 543 e-153
sp|O57713|YJ89_PYRHO HYPOTHETICAL PROTEIN PH1989 >gi|7519370|pir... 116 3e-25
pir||H75029 hypothetical protein PAB1174 - Pyrococcus abyssi (st... 111 7e-24
sp|O27329|YC61_METTH HYPOTHETICAL PROTEIN MTH1261 >gi|7451335|pi... 94 2e-18
sp|Q58990|YF95_METJA HYPOTHETICAL PROTEIN MJ1595 >gi|2128959|pir... 92 7e-18
sp|O26478|Y378_METTH HYPOTHETICAL 37.0 KDA PROTEIN >gi|7482547|p... 80 3e-14
gi|11498189 dolichol-P-glucose synthetase, putative [Archaeoglob... 72 7e-12
>pir||H75032 hypothetical protein PAB0826 - Pyrococcus abyssi (strain Orsay)
>gi|5458670|emb|CAB50157.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 285
Score = 543 bits (1383), Expect = e-153
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MIVGLKQIELVNVRLIPFILAVITYYLSVFLFAIRWKYVLKGLGYEVKLLDSLIGVLIGL 60
MIVGLKQIELVNVRLIPFILAVITYYLSVFLFAIRWKYVLKGLGYEVKLLDSLIGVLIGL
Sbjct: 1 MIVGLKQIELVNVRLIPFILAVITYYLSVFLFAIRWKYVLKGLGYEVKLLDSLIGVLIGL 60
Query: 61 SINAITPMSRAGGEMARALWIKLKSGVSITEAIASMIYERILEGFPVAGLLLSAILLIPI 120
SINAITPMSRAGGEMARALWIKLKSGVSITEAIASMIYERILEGFPVAGLLLSAILLIPI
Sbjct: 61 SINAITPMSRAGGEMARALWIKLKSGVSITEAIASMIYERILEGFPVAGLLLSAILLIPI 120
Query: 121 HRRASETLAFIIILGLMVFILRYEEIIELLSKRIEKIKECKDRLIMLRKNFQINIIAIST 180
HRRASETLAFIIILGLMVFILRYEEIIELLSKRIEKIKECKDRLIMLRKNFQINIIAIST
Sbjct: 121 HRRASETLAFIIILGLMVFILRYEEIIELLSKRIEKIKECKDRLIMLRKNFQINIIAIST 180
Query: 181 SSAVWMLDILRFKLLGLAINLSFPWKMTLVLSISNLILSVISVTPGGVGIVEGGLIGIML 240
SSAVWMLDILRFKLLGLAINLSFPWKMTLVLSISNLILSVISVTPGGVGIVEGGLIGIML
Sbjct: 181 SSAVWMLDILRFKLLGLAINLSFPWKMTLVLSISNLILSVISVTPGGVGIVEGGLIGIML 240
Query: 241 ILGYPKEVALSLTILERFISLILGPGTGAVVLSMNGGLKLWKALK 285
ILGYPKEVALSLTILERFISLILGPGTGAVVLSMNGGLKLWKALK
Sbjct: 241 ILGYPKEVALSLTILERFISLILGPGTGAVVLSMNGGLKLWKALK 285
>sp|O57713|YJ89_PYRHO HYPOTHETICAL PROTEIN PH1989 >gi|7519370|pir||E71215 hypothetical
protein PH1989 - Pyrococcus horikoshii
>gi|3258433|dbj|BAA31116.1| (AP000007) 335aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 335
Score = 116 bits (288), Expect = 3e-25
Identities = 83/303 (27%), Positives = 152/303 (49%), Gaps = 34/303 (11%)
Query: 5 LKQIELVNVRLIPFILAVITYYLSVFLFAIRWKYVLKGLGYEVKLLDSLIGVLIGLSINA 64
+K + ++R I +LA++ Y +SV ++A+RW LKG V + + GV IG+ +N
Sbjct: 27 IKLMMRADIRFI--LLAILMYCISVLIWAVRWNTFLKGANINVSFVKVIEGVFIGIFLNN 84
Query: 65 ITPMSRAGGEMARALWIK-LKSGVSITEAIASMIYERILEGFPVAGLLLSAILL-IPIHR 122
+TP +R GGE + ++IK S S ++ A++I +RIL+ PV ++ A L + IH
Sbjct: 85 LTPGARTGGEAVKVIFIKKASSNGSYSKVFATVIADRILDVIPVVVFMMLAFLYALTIHA 144
Query: 123 RA-------SETLAFIIILGLMVFILRYEEIIELL-----------------------SK 152
R S + II+L VF ++ + + L K
Sbjct: 145 RVLLIILGISAIILVIILLMTTVFSIKEKYALSALLYLARIFRKIFPSKFSMSEDKIKEK 204
Query: 153 RIEKIKECKDRLIMLRKNFQINIIAISTSSAVWMLDILRFKLLGLAINLSFPWKMTLVLS 212
+ +I+E K+ + L K + + S +W DIL+ + L++ + L++
Sbjct: 205 LLGEIREFKETFLRLAKRKRRLSSTMLYSFILWGADILKTYFIFLSLGGRITFLQVLLVR 264
Query: 213 ISNLILSVISVTPGGVGIVEGGLIGIMLILGYPKEVALSLTILERFISLILGPGTGAVVL 272
++++ +++ISV PGG+GI E + L +G K +A+S+T+L+R IS + G +++
Sbjct: 265 MASIAVAMISVIPGGIGITEVVQSALFLAVGVEKALAVSVTMLDRLISFWIPTLLGGILV 324
Query: 273 SMN 275
N
Sbjct: 325 LKN 327
>pir||H75029 hypothetical protein PAB1174 - Pyrococcus abyssi (strain Orsay)
>gi|5459192|emb|CAB50678.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 335
Score = 111 bits (276), Expect = 7e-24
Identities = 80/279 (28%), Positives = 137/279 (48%), Gaps = 42/279 (15%)
Query: 19 ILAVITYYLSVFLFAIRWKYVLKGLGYEVKLLDSLIGVLIGLSINAITPMSRAGGEMARA 78
+LA+I Y +SV +A+RW LK V L + GV IG+ +N +TP +R GGE +
Sbjct: 40 LLAIIMYCISVLTWALRWATFLKSAKVSVSFLRVIEGVFIGIFLNNLTPGARTGGEAVKV 99
Query: 79 LWIKLKS-GVSITEAIASMIYERILEGFPVAGLLLSAILL-IPIHRRASETLAFIIILGL 136
L+IK S S ++ A+++ +RIL+ PV ++ A L + +H + +IILG+
Sbjct: 100 LFIKKSSQNGSYSKVFATVMADRILDVIPVIAFMVLAFLYALTLHVKV-----LLIILGI 154
Query: 137 MVFILRYEEIIELL-----------------------------------SKRIEKIKECK 161
IL +I L K +++ +E K
Sbjct: 155 SALILTLIVLITTLLSVKEKYALSFLLKLFRLFKRIFPSKLTYTEETIREKLLKEFREFK 214
Query: 162 DRLIMLRKNFQINIIAISTSSAVWMLDILRFKLLGLAINLSFPWKMTLVLSISNLILSVI 221
LI+L K + + S +W+ DI++ + L++ L++ ++++ +++I
Sbjct: 215 ATLIVLAKEKRRLASTLLYSFVLWLADIMKTYFVFLSLGSEVNLFQVLLVRMASMAVAMI 274
Query: 222 SVTPGGVGIVEGGLIGIMLILGYPKEVALSLTILERFIS 260
SV PGG+GI E G+ L +G K VA+S+T+L+R IS
Sbjct: 275 SVIPGGIGISEAVQSGLFLAIGIEKTVAVSVTMLDRLIS 313
>sp|O27329|YC61_METTH HYPOTHETICAL PROTEIN MTH1261 >gi|7451335|pir||F69035 conserved
hypothetical protein MTH1261 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622374|gb|AAB85750.1| (AE000892) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 338
Score = 94.0 bits (230), Expect = 2e-18
Identities = 72/303 (23%), Positives = 138/303 (44%), Gaps = 33/303 (10%)
Query: 1 MIVGLKQIE--LVNVRLIPFILAVITYYLSVFLFAIRWKYVLKGLGYEVKLLDSLIGVLI 58
+I+G +IE L + ++AV+ ++ + LF +RW + + +V +L+
Sbjct: 21 LIIGPGEIEDALRKADPVYVLMAVVLEFIILALFTLRWSITTRAVSIDVGKRHLFPMLLV 80
Query: 59 GLSINAITPMSRAGGEMARALWIKLKSGVSITEAIASMIYERILEGFPVAGLLLSAILLI 118
G++IN +TP +R GGE RA + S S+ A A++I +R L+ FP L + I+ I
Sbjct: 81 GMAINNLTPSARGGGEPVRAYMLGKYSRASMESAFATVIADRGLDTFPFIFLAVLTIIGI 140
Query: 119 PIHRRASETLAFIIILGLMVFILR----------------------------YEEIIELL 150
++ S + +I +++ ++ Y + E L
Sbjct: 141 VLYFDLSRWILAALIASVVIIVVAFFLALYVSVDRDAGERITGWILGVVKRFYRKNHERL 200
Query: 151 SKRIEK-IKECKDRLIMLRKNFQINIIAISTSSAVWMLDILRFKLLGLAINLSFPWKMTL 209
+R+ + E + + M+ K + + I S +W+L+I+R L+ A +
Sbjct: 201 ERRVRSALHEFQSTMRMMLKEKNVLVYGIPISFLIWILEIIRVYLIFTAFGTDISLLVIA 260
Query: 210 VLSISNLILSVISVTPGGVGIVEGGLIGIMLILGYPKEVALSLTILERFIS--LILGPGT 267
+ I ++ +I + PGG+G V+G +I G V+ + T++ER IS +I G
Sbjct: 261 EVFILATLIGMIPLLPGGLGAVDGIMIVFYSYAGVSPSVSAAATVVERLISFWMISAMGV 320
Query: 268 GAV 270
A+
Sbjct: 321 AAI 323
>sp|Q58990|YF95_METJA HYPOTHETICAL PROTEIN MJ1595 >gi|2128959|pir||B64499 hypothetical
protein MJ1595 - Methanococcus jannaschii
>gi|1592205|gb|AAB99613.1| (U67599) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 336
Score = 92.1 bits (225), Expect = 7e-18
Identities = 81/298 (27%), Positives = 141/298 (47%), Gaps = 29/298 (9%)
Query: 3 VGLKQIELVNVRLIP--FILAVITYYLSVFLFAIRWKYVLKGLGYEVKLLDSLIGVLIGL 60
+GL +I V + P ILA I L + + RWK+++K LGY + + VL+GL
Sbjct: 27 IGLDKIIKVLINTNPEYVILAFILQILVSVILSARWKFIIKILGYSANFKNIFLLVLMGL 86
Query: 61 SINAITPMSRAGGEMARALWIKLKSGVSITEAIASMIYERILEG-------------FPV 107
IN ITP R GGE RA ++ + A ++++ ER+L+ F V
Sbjct: 87 FINNITPSMRGGGEAFRAYYLSKLEEIPKGLAFSTVVVERVLDTAIFLFFTLFVIGYFVV 146
Query: 108 AG------LLLSAILL-----IPIHRRASETLAFIIILGLMVFILRYEEIIELLSKRIEK 156
G L+LS I L I I+ A++ L + + FI +Y +K ++
Sbjct: 147 TGFKYLEYLILSWIFLFSLTAIIIYLIANKGLLIKTVTKISKFICKYCSYNYDETKILQS 206
Query: 157 IKECKD--RLIMLRKNFQINIIAISTSSAVWMLDILRFKLLGLAINLSFPWKMTLVLSIS 214
I+E + + ++ +++ ++AI S ++ DIL+ LL L+++ + +
Sbjct: 207 IEEFYNSMKFFKNKRGWEV-VVAIFLSVMRYIFDILKLWLLFLSLSYVVSVICVSAVYLI 265
Query: 215 NLILSVISVTPGGVGIVEGGLIGIMLILGYPKEVALSLTILERFISLILGPGTGAVVL 272
L+ V+S+TP G G + +I P VA ++T+L+R +S IL G + +
Sbjct: 266 TLLSGVLSITPSGFGTADTVMILSFSAFNIPPSVAAAVTLLDRLVSYILPTILGYIAM 323
>sp|O26478|Y378_METTH HYPOTHETICAL 37.0 KDA PROTEIN >gi|7482547|pir||H69148 hypothetical
protein MTH378 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621439|gb|AAB84884.1| (AE000823)
unknown [Methanobacterium thermoautotrophicum]
Length = 334
Score = 80.0 bits (194), Expect = 3e-14
Identities = 61/267 (22%), Positives = 129/267 (47%), Gaps = 27/267 (10%)
Query: 34 IRWKYVLKGLGYEVKLLDSLIGVLIGLSINAITPMSRAGGEMARALWIKLKSGVSITEAI 93
+RW +++ G ++ + + IGL ++PM R+ GE+ AL K +G+ ++E +
Sbjct: 57 LRWGFII---GQPWRMRVNFMVKTIGLFAGNLSPM-RSAGEVMNALAGKKLNGIELSEGL 112
Query: 94 ASMIYERILEGFPVAGLLLSAILLIPIHRRASETLAFI-IILGLMVFILRYEE------- 145
++ + ER + GLLL A +++P+ R + A + +++ +++++ + E
Sbjct: 113 SAGLTERFFDLGIGGGLLLLAAVMVPVIRVIALFGAILSVLITYLIYLVNWREEKGLRIY 172
Query: 146 -----IIELLSKRIEKIKECKDRLIMLRK----------NFQINIIAISTSSAVWMLDIL 190
IIE L E ++ +RL K NF + S W+++ L
Sbjct: 173 QRIHSIIERLPVSEETLENLYERLTSGIKGMIGYTRSYSNFTSLGVIFILSLLSWLMECL 232
Query: 191 RFKLLGLAINLSFPWKMTLVLSISNLILSVISVTPGGVGIVEGGLIGIMLILGYPKEVAL 250
R L+ +A + + +++ + ++ ++S PGG+G +E + G+ ++ G P +A
Sbjct: 233 RLYLVFMAFGVETSFSAVIIIFLLANLVGILSALPGGMGSMEVSMAGLFVVFGVPGFLAG 292
Query: 251 SLTILERFISLILGPGTGAVVLSMNGG 277
S+ +++R IS + GA+ S G
Sbjct: 293 SIALVDRIISFWMVTALGAIFSSCYAG 319
>gi|11498189 dolichol-P-glucose synthetase, putative [Archaeoglobus fulgidus]
>gi|7483291|pir||E69322 dolichol-P-glucose synthetase
homolog - Archaeoglobus fulgidus
>gi|2650038|gb|AAB90655.1| (AE001064) dolichol-P-glucose
synthetase, putative [Archaeoglobus fulgidus]
Length = 581
Score = 72.2 bits (174), Expect = 7e-12
Identities = 65/245 (26%), Positives = 118/245 (47%), Gaps = 27/245 (11%)
Query: 4 GLKQIELVNVRLIPFIL--AVITYYLSVFLFAIRWKYVLKGLGYEVKLLDSLIGVLIGLS 61
G++ + + + PF L + + Y LS L +R+ Y+++ LG E LL S V I +
Sbjct: 312 GIENVYESLISINPFFLLTSALLYSLSYILRGLRFDYIMRSLGRERGLLFSTAAVSISQT 371
Query: 62 INAITPMSRAGGEMARALWIKLKSGVSITEAIASMIYERILEGFPVA------GLLLSAI 115
+N ITP+ G++ARA ++ + V +E+I + ER+ + VA LLL A
Sbjct: 372 VNVITPIRL--GDLARA-YVFRRREVPYSESIGGIAAERVYDLISVALIAAVSALLLGAG 428
Query: 116 LLIPIHRRASETLAFIIILGLMVFILRYEEIIELLSKRIEKIKECKDRLIMLRKNFQINI 175
L P++ + A +I G+++ + R E ++ + K K+ K +I
Sbjct: 429 LKEPVY---AFIFAGMIFAGILL-LSRMENVVGKVFKNAMKVMGIKQ-----------SI 473
Query: 176 IAISTSSAVWMLDILRFKLLGLAINLSFPWKMTLVLSISNLILSVISVTPGGVGIVEGGL 235
+ S +W+ DI L+ L+ + L +++ N I+ + +TPGGVG E +
Sbjct: 474 VLTFLSLLLWLSDITVCYLIALSFGDVSFILIALAVAVGN-IVKALPITPGGVGTYEAAV 532
Query: 236 IGIML 240
++L
Sbjct: 533 TAVLL 537
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.147 0.415
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95046493
Number of Sequences: 2977
Number of extensions: 3702376
Number of successful extensions: 13106
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 13094
Number of HSP's gapped (non-prelim): 9
length of query: 285
length of database: 189,106,746
effective HSP length: 53
effective length of query: 232
effective length of database: 157,386,935
effective search space: 36513768920
effective search space used: 36513768920
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 165 (68.7 bits)