BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0831 (PAB0831) DE:Hypothetical protein
         (111 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75033 hypothetical protein PAB0831 - Pyrococcus abyssi (st...   218  1e-56
pir||F71135 hypothetical protein PH0850 - Pyrococcus horikoshii ...   155  1e-37

>pir||E75033 hypothetical protein PAB0831 - Pyrococcus abyssi (strain Orsay)
           >gi|5458675|emb|CAB50162.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 111
           
 Score =  218 bits (550), Expect = 1e-56
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MLEILSFMFFTGGGLVMLYIAAFASTNLIRIAALLGALGYGMLGFLVAESMSLDIRRKSR 60
           MLEILSFMFFTGGGLVMLYIAAFASTNLIRIAALLGALGYGMLGFLVAESMSLDIRRKSR
Sbjct: 1   MLEILSFMFFTGGGLVMLYIAAFASTNLIRIAALLGALGYGMLGFLVAESMSLDIRRKSR 60

Query: 61  RSDRNVILAITLISFGLNYYALYAYTHSNVAPILLMGPGLVIGLWTYAKAK 111
           RSDRNVILAITLISFGLNYYALYAYTHSNVAPILLMGPGLVIGLWTYAKAK
Sbjct: 61  RSDRNVILAITLISFGLNYYALYAYTHSNVAPILLMGPGLVIGLWTYAKAK 111


>pir||F71135 hypothetical protein PH0850 - Pyrococcus horikoshii
           >gi|3257261|dbj|BAA29944.1| (AP000003) 111aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 111
           
 Score =  155 bits (388), Expect = 1e-37
 Identities = 75/111 (67%), Positives = 92/111 (82%)

Query: 1   MLEILSFMFFTGGGLVMLYIAAFASTNLIRIAALLGALGYGMLGFLVAESMSLDIRRKSR 60
           MLEI SFMFFTGGGLVML+IAAF+ T   RIAA+LGA+GYG+LGFLV ESMS+DIRRK +
Sbjct: 1   MLEIFSFMFFTGGGLVMLFIAAFSITWAQRIAAILGAIGYGLLGFLVVESMSMDIRRKRK 60

Query: 61  RSDRNVILAITLISFGLNYYALYAYTHSNVAPILLMGPGLVIGLWTYAKAK 111
            +D+N+IL +TL SF LNYYAL +Y    VAP+LL+GPGL++GLW + K K
Sbjct: 61  AADKNIILGMTLGSFALNYYALASYLRDYVAPLLLVGPGLLLGLWIFLKGK 111


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.144    0.416 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37126016
Number of Sequences: 2977
Number of extensions: 1243165
Number of successful extensions: 4621
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4619
Number of HSP's gapped (non-prelim): 2
length of query: 111
length of database: 189,106,746
effective HSP length: 50
effective length of query: 61
effective length of database: 159,182,396
effective search space: 9710126156
effective search space used: 9710126156
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 160 (66.7 bits)