BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0834 (PAB0834) DE:Hypothetical protein
         (169 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75034 hypothetical protein PAB0834 - Pyrococcus abyssi (st...   325  2e-88
pir||H71129 hypothetical protein PH0805 - Pyrococcus horikoshii ...   133  1e-30

>pir||D75034 hypothetical protein PAB0834 - Pyrococcus abyssi (strain Orsay)
           >gi|5458682|emb|CAB50169.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 169
           
 Score =  325 bits (825), Expect = 2e-88
 Identities = 169/169 (100%), Positives = 169/169 (100%)

Query: 1   MGAGARIAIAMVLIFAIIMTPIVRITTENKTVELTYGPIALASTAVITYGMFEEMHVGLE 60
           MGAGARIAIAMVLIFAIIMTPIVRITTENKTVELTYGPIALASTAVITYGMFEEMHVGLE
Sbjct: 1   MGAGARIAIAMVLIFAIIMTPIVRITTENKTVELTYGPIALASTAVITYGMFEEMHVGLE 60

Query: 61  DLAGVLKGIVEEGNIPMNVNFFAFLVAIFVSLIYAIPLGAIMGVFSRAGFGLTLAGSIML 120
           DLAGVLKGIVEEGNIPMNVNFFAFLVAIFVSLIYAIPLGAIMGVFSRAGFGLTLAGSIML
Sbjct: 61  DLAGVLKGIVEEGNIPMNVNFFAFLVAIFVSLIYAIPLGAIMGVFSRAGFGLTLAGSIML 120

Query: 121 LVLLMGTNQEELGGVMYPDYGLFIIMILAILGIVFGGSKKVVIKTESKS 169
           LVLLMGTNQEELGGVMYPDYGLFIIMILAILGIVFGGSKKVVIKTESKS
Sbjct: 121 LVLLMGTNQEELGGVMYPDYGLFIIMILAILGIVFGGSKKVVIKTESKS 169


>pir||H71129 hypothetical protein PH0805 - Pyrococcus horikoshii
           >gi|3257215|dbj|BAA29898.1| (AP000003) 152aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 152
           
 Score =  133 bits (332), Expect = 1e-30
 Identities = 65/156 (41%), Positives = 99/156 (62%), Gaps = 6/156 (3%)

Query: 1   MGAGARIAIAMVLIFAIIMTPIVRITTENKTVELTYGPIALASTAVITYGMFEEMHVGLE 60
           MG GARI IA+VL+  +++ P+VRI    K +E+ YGP++ A+   +   +  +  +   
Sbjct: 1   MGRGARIGIAIVLLLTLLVAPVVRIEMHGKIIEVGYGPVSFATGTYLLGTIIGKQRLVSS 60

Query: 61  DLAGVLKGIVEEGNIPMNVNFFAFLVAIFVSLIYAIPLGAIMGVFSRAGFGLTLAGSIML 120
           DL  +L+     G +PM VN  + L+A  V LI+A+P+GAI+ +FSR+GF L L GSI L
Sbjct: 61  DLISMLEEFDRSGELPMEVNLLSLLMATIVGLIFAVPIGAILALFSRSGFALALIGSIFL 120

Query: 121 LVLLMGTNQEELGGVMYPDYGLFIIMILAILGIVFG 156
            ++LMG         + PDYG+F+IMIL+I+G+V G
Sbjct: 121 FLILMGAK------TIVPDYGIFLIMILSIIGLVLG 150


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.145    0.403 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53827611
Number of Sequences: 2977
Number of extensions: 2081328
Number of successful extensions: 9042
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9039
Number of HSP's gapped (non-prelim): 2
length of query: 169
length of database: 189,106,746
effective HSP length: 53
effective length of query: 116
effective length of database: 157,386,935
effective search space: 18256884460
effective search space used: 18256884460
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 162 (67.5 bits)