BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0835 (PAB0835) DE:Hypothetical protein
(139 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75034 hypothetical protein PAB0835 - Pyrococcus abyssi (st... 281 2e-75
pir||E71129 hypothetical protein PH0802 - Pyrococcus horikoshii ... 213 5e-55
gi|11497724 A. fulgidus predicted coding region AF0104 [Archaeog... 107 5e-23
emb|CAB62688.1| (AL133422) hypothetical protein SCM1.30c. [Strep... 73 2e-12
gb|AAG20444.1| (AE005116) Vng2339c [Halobacterium sp. NRC-1] 68 5e-11
>pir||G75034 hypothetical protein PAB0835 - Pyrococcus abyssi (strain Orsay)
>gi|5458685|emb|CAB50172.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 139
Score = 281 bits (712), Expect = 2e-75
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MGSIGRVYLFRIPEGEEIISYITRFCEKNNVKIAVVKAIGSLRNPKIAYFVEEEGKYKEI 60
MGSIGRVYLFRIPEGEEIISYITRFCEKNNVKIAVVKAIGSLRNPKIAYFVEEEGKYKEI
Sbjct: 1 MGSIGRVYLFRIPEGEEIISYITRFCEKNNVKIAVVKAIGSLRNPKIAYFVEEEGKYKEI 60
Query: 61 QLKGTYELISLLGNVSLKDGKPFLHAHVSLGNDEGIVFGGHLVEGEVFVAEVYIQEIKGE 120
QLKGTYELISLLGNVSLKDGKPFLHAHVSLGNDEGIVFGGHLVEGEVFVAEVYIQEIKGE
Sbjct: 61 QLKGTYELISLLGNVSLKDGKPFLHAHVSLGNDEGIVFGGHLVEGEVFVAEVYIQEIKGE 120
Query: 121 KLERKPRDNGLALWDELVI 139
KLERKPRDNGLALWDELVI
Sbjct: 121 KLERKPRDNGLALWDELVI 139
>pir||E71129 hypothetical protein PH0802 - Pyrococcus horikoshii
>gi|3257212|dbj|BAA29895.1| (AP000003) 143aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 143
Score = 213 bits (538), Expect = 5e-55
Identities = 95/137 (69%), Positives = 121/137 (87%)
Query: 1 MGSIGRVYLFRIPEGEEIISYITRFCEKNNVKIAVVKAIGSLRNPKIAYFVEEEGKYKEI 60
M S+GR YLFR+PEGEE+++YI FC+K ++ A++ IG+L+NPKI YF+EE+ +YK I
Sbjct: 5 MFSLGRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVI 64
Query: 61 QLKGTYELISLLGNVSLKDGKPFLHAHVSLGNDEGIVFGGHLVEGEVFVAEVYIQEIKGE 120
LKG+YELISL+GNVSLKDG+PF+HAHVSLGN+EGIVFGGHLVEGEVFVAE+++QE+KGE
Sbjct: 65 PLKGSYELISLIGNVSLKDGEPFVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQELKGE 124
Query: 121 KLERKPRDNGLALWDEL 137
K+ERKP GLALW+EL
Sbjct: 125 KIERKPTKYGLALWEEL 141
>gi|11497724 A. fulgidus predicted coding region AF0104 [Archaeoglobus fulgidus]
>gi|7483360|pir||H69262 hypothetical protein AF0104 -
Archaeoglobus fulgidus >gi|2650552|gb|AAB91134.1|
(AE001099) A. fulgidus predicted coding region AF0104
[Archaeoglobus fulgidus]
Length = 138
Score = 107 bits (265), Expect = 5e-23
Identities = 54/132 (40%), Positives = 81/132 (60%), Gaps = 2/132 (1%)
Query: 4 IGRVYLFRIPEGEEIISYITRFCEKNNVKIAVVKAIGSLRNPKIAYFVEEEGKYKEIQLK 63
+G+ +L R+ G++++ I F E+ + A + AIG++R+ I Y+ +E+ +Y + +L
Sbjct: 8 VGKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELM 67
Query: 64 GTYELISLLGNVSLKDGKPFLHAHVSLGNDEGIVFGGHLVEGEVFVAEVYIQEIKGEKLE 123
E++SL GNVS+KD KPF H HV LG D G V+GGHL EVF EV++ + GE E
Sbjct: 68 EPLEILSLSGNVSMKDSKPFCHIHVLLGKD-GEVYGGHLFSAEVFACEVFVLPLSGEAPE 126
Query: 124 RK-PRDNGLALW 134
R GL LW
Sbjct: 127 RAFDEQTGLFLW 138
>emb|CAB62688.1| (AL133422) hypothetical protein SCM1.30c. [Streptomyces coelicolor
A3(2)]
Length = 197
Score = 72.6 bits (175), Expect = 2e-12
Identities = 38/130 (29%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 7 VYLFRIPEGEEIISYITRFCEKNNVKIAVVKAIGSLRNPKIAYFVEEEGKYKEIQLKGTY 66
VY+ + +GE+ ++ +T F + ++ + V A+G+ + +F + Y+ I ++
Sbjct: 66 VYVVVLDQGEDAVAELTAFARERSLGASQVTAVGAFSQAVVGWFDRQAKDYRHIPVREQC 125
Query: 67 ELISLLGNVSLKDGKPFLHAHVSLGNDEGIVFGGHLVEGEVF-VAEVYIQEIKGEKLERK 125
E++SL+G++++ D P H H LG +G GGHL+ G V+ EV +++ E +
Sbjct: 126 EVLSLIGDIAVADDGPTPHLHAVLGLSDGSTRGGHLLSGRVWPTLEVVVRDSPAELAKIH 185
Query: 126 PRDNGLALWD 135
D GLAL D
Sbjct: 186 RPDIGLALID 195
>gb|AAG20444.1| (AE005116) Vng2339c [Halobacterium sp. NRC-1]
Length = 139
Score = 67.9 bits (163), Expect = 5e-11
Identities = 30/130 (23%), Positives = 63/130 (48%)
Query: 5 GRVYLFRIPEGEEIISYITRFCEKNNVKIAVVKAIGSLRNPKIAYFVEEEGKYKEIQLKG 64
GR ++ R+ G E + + ++ A +G++++ ++ Y+ +++ +Y +
Sbjct: 9 GREFVVRLDPGSEWRTELETLAATEDITAAWFTGLGAVQDAELWYYDQDDFEYTAAEFDE 68
Query: 65 TYELISLLGNVSLKDGKPFLHAHVSLGNDEGIVFGGHLVEGEVFVAEVYIQEIKGEKLER 124
E+ + +GN++ DG+PF H H +L G GHL VF E+Y++E+ + +
Sbjct: 69 PLEVAACVGNIATLDGEPFAHTHATLSRRSGQALAGHLERATVFAGELYVRELDADLVRE 128
Query: 125 KPRDNGLALW 134
L W
Sbjct: 129 HDAATDLDRW 138
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.143 0.409
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53192903
Number of Sequences: 2977
Number of extensions: 2179103
Number of successful extensions: 4596
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4591
Number of HSP's gapped (non-prelim): 5
length of query: 139
length of database: 189,106,746
effective HSP length: 52
effective length of query: 87
effective length of database: 157,985,422
effective search space: 13744731714
effective search space used: 13744731714
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)