BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0838 (PAB0838) DE:Hypothetical protein
(271 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75035 hypothetical protein PAB0838 - Pyrococcus abyssi (st... 538 e-152
pir||B71129 hypothetical protein PH0799 - Pyrococcus horikoshii ... 506 e-143
emb|CAC11281.1| (AL445063) conserved hypothetical protein [Therm... 71 2e-11
gi|11498614 A. fulgidus predicted coding region AF1009 [Archaeog... 69 4e-11
emb|CAC12019.1| (AL445065) conserved hypothetical protein [Therm... 69 5e-11
>pir||A75035 hypothetical protein PAB0838 - Pyrococcus abyssi (strain Orsay)
>gi|5458687|emb|CAB50174.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 271
Score = 538 bits (1370), Expect = e-152
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MTVVKMSKERMVELLQEHFELNLYEARAYVALVAFGVLTPAELASVSEVPAPRTYDVLRS 60
MTVVKMSKERMVELLQEHFELNLYEARAYVALVAFGVLTPAELASVSEVPAPRTYDVLRS
Sbjct: 1 MTVVKMSKERMVELLQEHFELNLYEARAYVALVAFGVLTPAELASVSEVPAPRTYDVLRS 60
Query: 61 LEKKGFAMNQPGKTNKYRPVHPANILEKFIQDWQERVKEELEAKKKAKEELLELMAPLIE 120
LEKKGFAMNQPGKTNKYRPVHPANILEKFIQDWQERVKEELEAKKKAKEELLELMAPLIE
Sbjct: 61 LEKKGFAMNQPGKTNKYRPVHPANILEKFIQDWQERVKEELEAKKKAKEELLELMAPLIE 120
Query: 121 TEVPKYGVERVWVVRGIKNSTLKTKEMLGEVQKEILLADDGFIAINLEDDIIKAVDRGVK 180
TEVPKYGVERVWVVRGIKNSTLKTKEMLGEVQKEILLADDGFIAINLEDDIIKAVDRGVK
Sbjct: 121 TEVPKYGVERVWVVRGIKNSTLKTKEMLGEVQKEILLADDGFIAINLEDDIIKAVDRGVK 180
Query: 181 AKIILTKNLLPRIKASKIVQYAKDGKLELKVLEKFDLPMLICDEEVFFALEDLAARYFNY 240
AKIILTKNLLPRIKASKIVQYAKDGKLELKVLEKFDLPMLICDEEVFFALEDLAARYFNY
Sbjct: 181 AKIILTKNLLPRIKASKIVQYAKDGKLELKVLEKFDLPMLICDEEVFFALEDLAARYFNY 240
Query: 241 ETQVWIKDHRVVDLFRKKFEEYWKEAEEAKV 271
ETQVWIKDHRVVDLFRKKFEEYWKEAEEAKV
Sbjct: 241 ETQVWIKDHRVVDLFRKKFEEYWKEAEEAKV 271
>pir||B71129 hypothetical protein PH0799 - Pyrococcus horikoshii
>gi|3257209|dbj|BAA29892.1| (AP000003) 267aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 267
Score = 506 bits (1290), Expect = e-143
Identities = 251/267 (94%), Positives = 262/267 (98%)
Query: 3 VVKMSKERMVELLQEHFELNLYEARAYVALVAFGVLTPAELASVSEVPAPRTYDVLRSLE 62
+VKMSKERMVELLQEHFELNLYEARAYVALVAFGVLTPAELASVSEVPAPRTYDVLRSLE
Sbjct: 1 MVKMSKERMVELLQEHFELNLYEARAYVALVAFGVLTPAELASVSEVPAPRTYDVLRSLE 60
Query: 63 KKGFAMNQPGKTNKYRPVHPANILEKFIQDWQERVKEELEAKKKAKEELLELMAPLIETE 122
KKGFAMNQPGKTNKYRPVHPAN+LEKFIQDWQERVKEELEAKKKAKEELLELMAPLIETE
Sbjct: 61 KKGFAMNQPGKTNKYRPVHPANVLEKFIQDWQERVKEELEAKKKAKEELLELMAPLIETE 120
Query: 123 VPKYGVERVWVVRGIKNSTLKTKEMLGEVQKEILLADDGFIAINLEDDIIKAVDRGVKAK 182
VPKYGVERVWVVRGIKNSTLKTKEML EVQ+EILLADDGFIAINLEDDIIKAVDRGVK +
Sbjct: 121 VPKYGVERVWVVRGIKNSTLKTKEMLEEVQREILLADDGFIAINLEDDIIKAVDRGVKTR 180
Query: 183 IILTKNLLPRIKASKIVQYAKDGKLELKVLEKFDLPMLICDEEVFFALEDLAARYFNYET 242
IILTKNLL RIK SKIVQYAK+GKLELKVL+KFDLPML+CDEEVFFALEDLAARYFNYET
Sbjct: 181 IILTKNLLARIKTSKIVQYAKEGKLELKVLDKFDLPMLVCDEEVFFALEDLAARYFNYET 240
Query: 243 QVWIKDHRVVDLFRKKFEEYWKEAEEA 269
QVWIKDHRVVDLF+K+FEEYW++AE A
Sbjct: 241 QVWIKDHRVVDLFKKRFEEYWEKAENA 267
>emb|CAC11281.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 348
Score = 70.6 bits (170), Expect = 2e-11
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 20/167 (11%)
Query: 21 LNLYEARAYVALVAFGVLTPAELASVSEVPAPRTYDVLRSLEKKGFAMNQPGKTNKYRPV 80
L YE + Y L+ +G + E A +S+VP PR YD+ SLE KG PGK YR V
Sbjct: 16 LTPYEIKVYKTLLIYGPNSATETAKLSKVPQPRVYDIFESLESKGAVEVSPGKRKIYRAV 75
Query: 81 HPANILEK---FIQDWQERVKEELEAKKKAKEELLELMAPLIETEVPKYGVERVWVVRGI 137
N +++ I+D+++R++ +E +KK KE L W+++
Sbjct: 76 PIDNFIDRKLIEIRDYKKRIESYIEQQKKFKESNPYL-----------------WMIKNN 118
Query: 138 KNSTLKTKEMLGEVQKEILLADDGFIAINLEDDIIKAVDRGVKAKII 184
K K+++ E + E++ + + L+ I A RG+ I+
Sbjct: 119 FQIREKMKDVINEAENELIASLNYENIRYLKKYFIDAAKRGITVVIV 165
>gi|11498614 A. fulgidus predicted coding region AF1009 [Archaeoglobus fulgidus]
>gi|7483531|pir||A69376 hypothetical protein AF1009 -
Archaeoglobus fulgidus >gi|2649588|gb|AAB90235.1|
(AE001034) A. fulgidus predicted coding region AF1009
[Archaeoglobus fulgidus]
Length = 247
Score = 69.5 bits (167), Expect = 4e-11
Identities = 45/135 (33%), Positives = 69/135 (50%), Gaps = 13/135 (9%)
Query: 19 FELNLYEARAYVALVAFGVLTPAELASVSEVPAPRTYDVLRSLEKKGFAMNQPGKTNKYR 78
F L+ YEA AYVALV+ G T E++ + +P + Y+VL L +KGFA QPG +R
Sbjct: 11 FGLSSYEASAYVALVSSGETTAREVSRKAGIPRTKVYEVLNRLVEKGFAEVQPGSPAIFR 70
Query: 79 PVHPANILEKFIQDWQERVKEELEAKKKAKEELLELMAPLIETEVPKYGVERVWVVRGIK 138
+ PA I + +D+ ER+ + L+A ++ K + K + VW+ RG
Sbjct: 71 AIEPAKIAARMQRDFNERLGKMLKAFEELKMD-------------EKSESKLVWISRGRW 117
Query: 139 NSTLKTKEMLGEVQK 153
+ +E L E K
Sbjct: 118 AVENRLREFLRENDK 132
>emb|CAC12019.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 238
Score = 69.1 bits (166), Expect = 5e-11
Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 23/207 (11%)
Query: 9 ERMVELLQEHFELNLYEARAYVALVAFGVLTPAELASVSEVPAPRTYDVLRSLEKKGFAM 68
ER+ E+L+ F L+ YEA+ + ALV GV +AS + +P Y V+ SL +KG A
Sbjct: 9 ERIQEMLRM-FGLSSYEAQGFAALVYHGVANADTIASTANIPRTSAYKVMESLVRKGLAK 67
Query: 69 NQPGKTNKYRPVHPANILEKFIQDWQERVKEELEAKKKAKEELLELMAPLIETEVPKYG- 127
G+ ++P I + + + Q+ ++ E +E P G
Sbjct: 68 ATEGRPRMFKPAKMEEIRDYYEEKLQQLFRDLKE----------------LEDNAPSRGE 111
Query: 128 VERVWVVRGIKNSTLKTKEMLGEVQKEILLADDGFIAI--NLEDDIIKAVDRGVKAKIIL 185
+ ++ + G + K +EM+ + EI+++ I I ++ I A+ RGV+ ++
Sbjct: 112 PQLIYTINGSQKVMEKIEEMINLTEHEIMISTPKIIEIRKQMKKPIENAIKRGVRVVFVI 171
Query: 186 TKNLLPRIKASKIVQYAKDGKLELKVL 212
N R+ A+ IV Y +DG + ++
Sbjct: 172 PPN--KRVPANVIV-YRRDGLIATDIV 195
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.136 0.380
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94110537
Number of Sequences: 2977
Number of extensions: 3828836
Number of successful extensions: 15600
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15596
Number of HSP's gapped (non-prelim): 5
length of query: 271
length of database: 189,106,746
effective HSP length: 58
effective length of query: 213
effective length of database: 154,394,500
effective search space: 32886028500
effective search space used: 32886028500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)