BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0842 (PAB0842) DE:Hypothetical protein
         (179 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75036 hypothetical protein PAB0842 - Pyrococcus abyssi (st...   365  e-100
pir||A71127 hypothetical protein PH0783 - Pyrococcus horikoshii ...   345  2e-94
gi|11499559 conserved hypothetical protein [Archaeoglobus fulgid...    92  3e-18
gb|AAK40608.1| Multiprotein Bridging Factor (MBP-like), putative...    92  3e-18
pir||D69197 conserved hypothetical protein MTH729 - Methanobacte...    86  3e-16
sp|Q58006|Y586_METJA HYPOTHETICAL PROTEIN MJ0586 >gi|2128394|pir...    75  4e-13
emb|CAC12077.1| (AL445066) conserved hypothetical protein [Therm...    70  2e-11
pir||E72504 hypothetical protein APE2011 - Aeropyrum pernix (str...    69  3e-11

>pir||F75036 hypothetical protein PAB0842 - Pyrococcus abyssi (strain Orsay)
           >gi|5458700|emb|CAB50187.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 179
           
 Score =  365 bits (928), Expect = e-100
 Identities = 179/179 (100%), Positives = 179/179 (100%)

Query: 1   MGKLMAKAKPRYCELCGREIRGEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPT 60
           MGKLMAKAKPRYCELCGREIRGEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPT
Sbjct: 1   MGKLMAKAKPRYCELCGREIRGEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPT 60

Query: 61  RRLTPSKPRTPTIRRERPLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRI 120
           RRLTPSKPRTPTIRRERPLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRI
Sbjct: 61  RRLTPSKPRTPTIRRERPLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRI 120

Query: 121 AHGEYTPTIEEAKKLERFFKIKLVERVEADFEQKPIIPRDYEPTLGDIARIKIRKKKKK 179
           AHGEYTPTIEEAKKLERFFKIKLVERVEADFEQKPIIPRDYEPTLGDIARIKIRKKKKK
Sbjct: 121 AHGEYTPTIEEAKKLERFFKIKLVERVEADFEQKPIIPRDYEPTLGDIARIKIRKKKKK 179


>pir||A71127 hypothetical protein PH0783 - Pyrococcus horikoshii
           >gi|3257192|dbj|BAA29875.1| (AP000003) 200aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 200
           
 Score =  345 bits (875), Expect = 2e-94
 Identities = 163/179 (91%), Positives = 176/179 (98%)

Query: 1   MGKLMAKAKPRYCELCGREIRGEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPT 60
           +GKLMAKAKP+YCELCGREI+GEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREP 
Sbjct: 22  VGKLMAKAKPKYCELCGREIKGEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPR 81

Query: 61  RRLTPSKPRTPTIRRERPLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRI 120
           RR+T SKPR P++RRE+PLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVN+LRRI
Sbjct: 82  RRITSSKPRVPSVRREKPLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNLLRRI 141

Query: 121 AHGEYTPTIEEAKKLERFFKIKLVERVEADFEQKPIIPRDYEPTLGDIARIKIRKKKKK 179
           AHGEYTPTIEEA+KLERFFKIKLVE+VEADFEQKP+IPRDYEPTLGDIARIK++KKKKK
Sbjct: 142 AHGEYTPTIEEARKLERFFKIKLVEKVEADFEQKPVIPRDYEPTLGDIARIKVKKKKKK 200


>gi|11499559 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7429673|pir||H69496 conserved hypothetical protein
           AF1977 - Archaeoglobus fulgidus
           >gi|2648561|gb|AAB89276.1| (AE000966) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 159
           
 Score = 92.4 bits (226), Expect = 3e-18
 Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 14/166 (8%)

Query: 13  CELCGREIRGEGHIIRIEGAELLVCDDCYRKYG--RKPGTFSIMPRREPTRRLTPSKPRT 70
           CE+CGREI+G+G  I +EG+E+ VC  C R++G  +KP   S    ++  RR+   K R 
Sbjct: 6   CEICGREIKGKGFKIVVEGSEVTVCGSC-RQFGTEKKPSVAS----QQGARRVVLKKKRG 60

Query: 71  PTIRRERPLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRIAHGEYTPTIE 130
            T    +   TE++VE++   +     K G S E+L+ K+    +++++I + E TP  E
Sbjct: 61  ST----KIEFTEELVENFHIIIRREREKRGWSQEQLAKKIQEKESLIKKIENAEITPEPE 116

Query: 131 EAKKLERFFKIKLVERVEADFEQKPIIPRDYEPTLGDIARIKIRKK 176
             +KLE+ F IKL E+V    E K    +   PTLGD+  +K +KK
Sbjct: 117 VVEKLEKLFNIKLREQVP---EIKIEKSKSLVPTLGDVVVVKRKKK 159


>gb|AAK40608.1| Multiprotein Bridging Factor (MBP-like), putative (MBP-like)
           [Sulfolobus solfataricus]
           Length = 165
           
 Score = 92.4 bits (226), Expect = 3e-18
 Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 7/165 (4%)

Query: 12  YCELCGREIRGEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPTRRLTPSKPRTP 71
           YCELCG +IRG+G  +  EG+ + VC+ CY +  +         ++  TR+    KP  P
Sbjct: 8   YCELCGSQIRGKGITVSYEGSIITVCNSCYDRIRKHAVIVKADSKKSETRKKATLKP--P 65

Query: 72  TIRRERPLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRIAHGEYTPTIEE 131
            +         +IV DY + +  A  + G+S ++L+ K+ +S N+++R   G+  PTI +
Sbjct: 66  KMENAEL----EIVTDYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLKPTISQ 121

Query: 132 AKKLERFFKIKLVERVEADFEQKPIIPRDYEPTLGDIARIKIRKK 176
           A++LE+   IKLV  +E + E +     D   TLGD+  IK  KK
Sbjct: 122 ARQLEKILGIKLVTPLENNEESEKEFD-DTGLTLGDVVNIKEGKK 165


>pir||D69197 conserved hypothetical protein MTH729 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2621818|gb|AAB85234.1| (AE000852) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 155
           
 Score = 85.8 bits (209), Expect = 3e-16
 Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 15/163 (9%)

Query: 13  CELCGREIRGEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPTRRLTPSKP--RT 70
           CE+CG++I G+    +I+ + + VC +C  K+G+          REPT   TP K   R 
Sbjct: 3   CEICGKKIVGKPLKTKIDSSVMEVCREC-SKFGKII--------REPT---TPRKKSFRK 50

Query: 71  PTIRRERPLITE-DIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRIAHGEYTPTI 129
           P  R  RP+ T  ++VEDY   +     K   S E+L+ ++   V+V+ RI      P I
Sbjct: 51  PQKRSRRPMDTVYEVVEDYGRIIRTEREKRDWSREDLAERINEKVSVINRIESERMEPDI 110

Query: 130 EEAKKLERFFKIKLVERVEADFEQKPIIPRDYEPTLGDIARIK 172
           + A+KLER  KIKL+E+ EAD  +K         T+GDIARIK
Sbjct: 111 KLARKLERLLKIKLLEKFEADDLEKSEGGGFRGATIGDIARIK 153


>sp|Q58006|Y586_METJA HYPOTHETICAL PROTEIN MJ0586 >gi|2128394|pir||B64373 hypothetical
           protein MJ0586 - Methanococcus jannaschii
           >gi|1591294|gb|AAB98578.1| (U67507) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 170
           
 Score = 75.3 bits (182), Expect = 4e-13
 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 9/165 (5%)

Query: 13  CELCGREIRGEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPTRR--LTPSKPRT 70
           CELCG+ +  + + + IEG+E+ VC +C  K+G+ P T+S + ++    +  +T +K   
Sbjct: 9   CELCGK-LTDKLYKVIIEGSEMNVCKEC-AKFGKSPKTYSRLGKKTIIGKGTITTNKQVK 66

Query: 71  PTIRRERPLITE--DIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRIAHGEYTPT 128
             I+R R +      + EDY + + EA  K GLS EEL+ K+ +  + L++    E  P 
Sbjct: 67  KPIKRRRDIFDTLPMLREDYGDVIREAREKRGLSIEELAKKLKMKASTLQKFERYELEPN 126

Query: 129 IEEAKKLERFFKIKLVERVEADFEQKPIIPRDYEP-TLGDIARIK 172
            +E K LE+  KI L E +    E      RD +  TLGD  +IK
Sbjct: 127 EKEIKILEKELKISLTESIGE--ETSYYGGRDEDGFTLGDFIKIK 169


>emb|CAC12077.1| (AL445066) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 141
           
 Score = 69.9 bits (168), Expect = 2e-11
 Identities = 46/140 (32%), Positives = 75/140 (52%), Gaps = 8/140 (5%)

Query: 13  CELCGREIRGEGHIIRIEGAELLVCDDCYRKYGR---KPGTFSIMPRREPTRRLTPSKPR 69
           CE+CG+++     I+ I+GA L VCDDC  K+G    +   F  + +    +     +PR
Sbjct: 3   CEMCGKKVSKTTKIM-IDGAVLNVCDDC-AKFGTPVIEHNKFKPVDQAIKVQLPERPQPR 60

Query: 70  TPTIRRERPLITE---DIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRIAHGEYT 126
              I++    +++   DIVEDYAE V  A  +  +S  +L+ K+    NV+  I  G+  
Sbjct: 61  PVAIKKPAKKVSDEDLDIVEDYAELVKNARERLAMSQADLAAKIFERKNVIASIERGDLM 120

Query: 127 PTIEEAKKLERFFKIKLVER 146
           P ++ A+KLE+   I LVE+
Sbjct: 121 PDLKTARKLEKILGITLVEK 140


>pir||E72504 hypothetical protein APE2011 - Aeropyrum pernix (strain K1)
           >gi|5105709|dbj|BAA81021.1| (AP000063) 143aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 143
           
 Score = 69.1 bits (166), Expect = 3e-11
 Identities = 51/138 (36%), Positives = 76/138 (54%), Gaps = 10/138 (7%)

Query: 36  VCDDCYRKYGRKPGTFSIMPRREPTRRLTPSKPRTPTIRRER--PLITEDIVEDYAERVM 93
           +C  CY K  R  G   ++    P+RR   ++  +   RR R  PL   D+VEDY ER+ 
Sbjct: 3   LCLSCYMKLARS-GRAQLLREARPSRR-GAARGGSGGARRPRRVPLDMYDLVEDYPERIR 60

Query: 94  EAIRKSGLSYEELSHKVGLSVNVLRRIAHGEYTPTIEEAKKLERFFKIKLVERV---EAD 150
           EA    G S   L+ K+ +S  +LRRI  G+  P+++ AK++E+   +KL+E V   EA 
Sbjct: 61  EAREARGWSTAVLAQKLRISETMLRRIESGKLKPSLDLAKRMEKMLGVKLLEPVVDEEAY 120

Query: 151 FEQKPIIPRDYEPTLGDI 168
           +++     RDY  TLGDI
Sbjct: 121 YDED--YGRDY-ITLGDI 135


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.140    0.406 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69539939
Number of Sequences: 2977
Number of extensions: 2940392
Number of successful extensions: 9977
Number of sequences better than 1.0e-10: 8
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9968
Number of HSP's gapped (non-prelim): 8
length of query: 179
length of database: 189,106,746
effective HSP length: 53
effective length of query: 126
effective length of database: 157,386,935
effective search space: 19830753810
effective search space used: 19830753810
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)