BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0842 (PAB0842) DE:Hypothetical protein
(179 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75036 hypothetical protein PAB0842 - Pyrococcus abyssi (st... 365 e-100
pir||A71127 hypothetical protein PH0783 - Pyrococcus horikoshii ... 345 2e-94
gi|11499559 conserved hypothetical protein [Archaeoglobus fulgid... 92 3e-18
gb|AAK40608.1| Multiprotein Bridging Factor (MBP-like), putative... 92 3e-18
pir||D69197 conserved hypothetical protein MTH729 - Methanobacte... 86 3e-16
sp|Q58006|Y586_METJA HYPOTHETICAL PROTEIN MJ0586 >gi|2128394|pir... 75 4e-13
emb|CAC12077.1| (AL445066) conserved hypothetical protein [Therm... 70 2e-11
pir||E72504 hypothetical protein APE2011 - Aeropyrum pernix (str... 69 3e-11
>pir||F75036 hypothetical protein PAB0842 - Pyrococcus abyssi (strain Orsay)
>gi|5458700|emb|CAB50187.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 179
Score = 365 bits (928), Expect = e-100
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MGKLMAKAKPRYCELCGREIRGEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPT 60
MGKLMAKAKPRYCELCGREIRGEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPT
Sbjct: 1 MGKLMAKAKPRYCELCGREIRGEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPT 60
Query: 61 RRLTPSKPRTPTIRRERPLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRI 120
RRLTPSKPRTPTIRRERPLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRI
Sbjct: 61 RRLTPSKPRTPTIRRERPLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRI 120
Query: 121 AHGEYTPTIEEAKKLERFFKIKLVERVEADFEQKPIIPRDYEPTLGDIARIKIRKKKKK 179
AHGEYTPTIEEAKKLERFFKIKLVERVEADFEQKPIIPRDYEPTLGDIARIKIRKKKKK
Sbjct: 121 AHGEYTPTIEEAKKLERFFKIKLVERVEADFEQKPIIPRDYEPTLGDIARIKIRKKKKK 179
>pir||A71127 hypothetical protein PH0783 - Pyrococcus horikoshii
>gi|3257192|dbj|BAA29875.1| (AP000003) 200aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 200
Score = 345 bits (875), Expect = 2e-94
Identities = 163/179 (91%), Positives = 176/179 (98%)
Query: 1 MGKLMAKAKPRYCELCGREIRGEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPT 60
+GKLMAKAKP+YCELCGREI+GEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREP
Sbjct: 22 VGKLMAKAKPKYCELCGREIKGEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPR 81
Query: 61 RRLTPSKPRTPTIRRERPLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRI 120
RR+T SKPR P++RRE+PLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVN+LRRI
Sbjct: 82 RRITSSKPRVPSVRREKPLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNLLRRI 141
Query: 121 AHGEYTPTIEEAKKLERFFKIKLVERVEADFEQKPIIPRDYEPTLGDIARIKIRKKKKK 179
AHGEYTPTIEEA+KLERFFKIKLVE+VEADFEQKP+IPRDYEPTLGDIARIK++KKKKK
Sbjct: 142 AHGEYTPTIEEARKLERFFKIKLVEKVEADFEQKPVIPRDYEPTLGDIARIKVKKKKKK 200
>gi|11499559 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429673|pir||H69496 conserved hypothetical protein
AF1977 - Archaeoglobus fulgidus
>gi|2648561|gb|AAB89276.1| (AE000966) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 159
Score = 92.4 bits (226), Expect = 3e-18
Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 14/166 (8%)
Query: 13 CELCGREIRGEGHIIRIEGAELLVCDDCYRKYG--RKPGTFSIMPRREPTRRLTPSKPRT 70
CE+CGREI+G+G I +EG+E+ VC C R++G +KP S ++ RR+ K R
Sbjct: 6 CEICGREIKGKGFKIVVEGSEVTVCGSC-RQFGTEKKPSVAS----QQGARRVVLKKKRG 60
Query: 71 PTIRRERPLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRIAHGEYTPTIE 130
T + TE++VE++ + K G S E+L+ K+ +++++I + E TP E
Sbjct: 61 ST----KIEFTEELVENFHIIIRREREKRGWSQEQLAKKIQEKESLIKKIENAEITPEPE 116
Query: 131 EAKKLERFFKIKLVERVEADFEQKPIIPRDYEPTLGDIARIKIRKK 176
+KLE+ F IKL E+V E K + PTLGD+ +K +KK
Sbjct: 117 VVEKLEKLFNIKLREQVP---EIKIEKSKSLVPTLGDVVVVKRKKK 159
>gb|AAK40608.1| Multiprotein Bridging Factor (MBP-like), putative (MBP-like)
[Sulfolobus solfataricus]
Length = 165
Score = 92.4 bits (226), Expect = 3e-18
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 7/165 (4%)
Query: 12 YCELCGREIRGEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPTRRLTPSKPRTP 71
YCELCG +IRG+G + EG+ + VC+ CY + + ++ TR+ KP P
Sbjct: 8 YCELCGSQIRGKGITVSYEGSIITVCNSCYDRIRKHAVIVKADSKKSETRKKATLKP--P 65
Query: 72 TIRRERPLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRIAHGEYTPTIEE 131
+ +IV DY + + A + G+S ++L+ K+ +S N+++R G+ PTI +
Sbjct: 66 KMENAEL----EIVTDYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLKPTISQ 121
Query: 132 AKKLERFFKIKLVERVEADFEQKPIIPRDYEPTLGDIARIKIRKK 176
A++LE+ IKLV +E + E + D TLGD+ IK KK
Sbjct: 122 ARQLEKILGIKLVTPLENNEESEKEFD-DTGLTLGDVVNIKEGKK 165
>pir||D69197 conserved hypothetical protein MTH729 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621818|gb|AAB85234.1| (AE000852) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 155
Score = 85.8 bits (209), Expect = 3e-16
Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 13 CELCGREIRGEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPTRRLTPSKP--RT 70
CE+CG++I G+ +I+ + + VC +C K+G+ REPT TP K R
Sbjct: 3 CEICGKKIVGKPLKTKIDSSVMEVCREC-SKFGKII--------REPT---TPRKKSFRK 50
Query: 71 PTIRRERPLITE-DIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRIAHGEYTPTI 129
P R RP+ T ++VEDY + K S E+L+ ++ V+V+ RI P I
Sbjct: 51 PQKRSRRPMDTVYEVVEDYGRIIRTEREKRDWSREDLAERINEKVSVINRIESERMEPDI 110
Query: 130 EEAKKLERFFKIKLVERVEADFEQKPIIPRDYEPTLGDIARIK 172
+ A+KLER KIKL+E+ EAD +K T+GDIARIK
Sbjct: 111 KLARKLERLLKIKLLEKFEADDLEKSEGGGFRGATIGDIARIK 153
>sp|Q58006|Y586_METJA HYPOTHETICAL PROTEIN MJ0586 >gi|2128394|pir||B64373 hypothetical
protein MJ0586 - Methanococcus jannaschii
>gi|1591294|gb|AAB98578.1| (U67507) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 170
Score = 75.3 bits (182), Expect = 4e-13
Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 9/165 (5%)
Query: 13 CELCGREIRGEGHIIRIEGAELLVCDDCYRKYGRKPGTFSIMPRREPTRR--LTPSKPRT 70
CELCG+ + + + + IEG+E+ VC +C K+G+ P T+S + ++ + +T +K
Sbjct: 9 CELCGK-LTDKLYKVIIEGSEMNVCKEC-AKFGKSPKTYSRLGKKTIIGKGTITTNKQVK 66
Query: 71 PTIRRERPLITE--DIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRIAHGEYTPT 128
I+R R + + EDY + + EA K GLS EEL+ K+ + + L++ E P
Sbjct: 67 KPIKRRRDIFDTLPMLREDYGDVIREAREKRGLSIEELAKKLKMKASTLQKFERYELEPN 126
Query: 129 IEEAKKLERFFKIKLVERVEADFEQKPIIPRDYEP-TLGDIARIK 172
+E K LE+ KI L E + E RD + TLGD +IK
Sbjct: 127 EKEIKILEKELKISLTESIGE--ETSYYGGRDEDGFTLGDFIKIK 169
>emb|CAC12077.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 141
Score = 69.9 bits (168), Expect = 2e-11
Identities = 46/140 (32%), Positives = 75/140 (52%), Gaps = 8/140 (5%)
Query: 13 CELCGREIRGEGHIIRIEGAELLVCDDCYRKYGR---KPGTFSIMPRREPTRRLTPSKPR 69
CE+CG+++ I+ I+GA L VCDDC K+G + F + + + +PR
Sbjct: 3 CEMCGKKVSKTTKIM-IDGAVLNVCDDC-AKFGTPVIEHNKFKPVDQAIKVQLPERPQPR 60
Query: 70 TPTIRRERPLITE---DIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNVLRRIAHGEYT 126
I++ +++ DIVEDYAE V A + +S +L+ K+ NV+ I G+
Sbjct: 61 PVAIKKPAKKVSDEDLDIVEDYAELVKNARERLAMSQADLAAKIFERKNVIASIERGDLM 120
Query: 127 PTIEEAKKLERFFKIKLVER 146
P ++ A+KLE+ I LVE+
Sbjct: 121 PDLKTARKLEKILGITLVEK 140
>pir||E72504 hypothetical protein APE2011 - Aeropyrum pernix (strain K1)
>gi|5105709|dbj|BAA81021.1| (AP000063) 143aa long
hypothetical protein [Aeropyrum pernix]
Length = 143
Score = 69.1 bits (166), Expect = 3e-11
Identities = 51/138 (36%), Positives = 76/138 (54%), Gaps = 10/138 (7%)
Query: 36 VCDDCYRKYGRKPGTFSIMPRREPTRRLTPSKPRTPTIRRER--PLITEDIVEDYAERVM 93
+C CY K R G ++ P+RR ++ + RR R PL D+VEDY ER+
Sbjct: 3 LCLSCYMKLARS-GRAQLLREARPSRR-GAARGGSGGARRPRRVPLDMYDLVEDYPERIR 60
Query: 94 EAIRKSGLSYEELSHKVGLSVNVLRRIAHGEYTPTIEEAKKLERFFKIKLVERV---EAD 150
EA G S L+ K+ +S +LRRI G+ P+++ AK++E+ +KL+E V EA
Sbjct: 61 EAREARGWSTAVLAQKLRISETMLRRIESGKLKPSLDLAKRMEKMLGVKLLEPVVDEEAY 120
Query: 151 FEQKPIIPRDYEPTLGDI 168
+++ RDY TLGDI
Sbjct: 121 YDED--YGRDY-ITLGDI 135
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.406
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69539939
Number of Sequences: 2977
Number of extensions: 2940392
Number of successful extensions: 9977
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9968
Number of HSP's gapped (non-prelim): 8
length of query: 179
length of database: 189,106,746
effective HSP length: 53
effective length of query: 126
effective length of database: 157,386,935
effective search space: 19830753810
effective search space used: 19830753810
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)