BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0846 (PAB0846) DE:Hypothetical protein
         (276 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75037 hypothetical protein PAB0846 - Pyrococcus abyssi (st...   543  e-154
pir||E71126 hypothetical protein PH0779 - Pyrococcus horikoshii ...   223  2e-57

>pir||A75037 hypothetical protein PAB0846 - Pyrococcus abyssi (strain Orsay)
           >gi|5458703|emb|CAB50190.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 276
           
 Score =  543 bits (1384), Expect = e-154
 Identities = 276/276 (100%), Positives = 276/276 (100%)

Query: 1   MSDRQIEVPRVKKSVLGLFIALMILIGTMQSNAVTSWGGVGRTLGVIVLLMFSIYLVVGI 60
           MSDRQIEVPRVKKSVLGLFIALMILIGTMQSNAVTSWGGVGRTLGVIVLLMFSIYLVVGI
Sbjct: 1   MSDRQIEVPRVKKSVLGLFIALMILIGTMQSNAVTSWGGVGRTLGVIVLLMFSIYLVVGI 60

Query: 61  FLLILAFMSGRDIGIRAPKGSAFNPLFLLLSMVLAMFYFMFILKIASMRNVKRIALNTTY 120
           FLLILAFMSGRDIGIRAPKGSAFNPLFLLLSMVLAMFYFMFILKIASMRNVKRIALNTTY
Sbjct: 61  FLLILAFMSGRDIGIRAPKGSAFNPLFLLLSMVLAMFYFMFILKIASMRNVKRIALNTTY 120

Query: 121 SPNASFIIPSPETKVHEVVMSKPVLYLPLLLLIIVIVLFGLYTFRDLSRSIERRKTKREL 180
           SPNASFIIPSPETKVHEVVMSKPVLYLPLLLLIIVIVLFGLYTFRDLSRSIERRKTKREL
Sbjct: 121 SPNASFIIPSPETKVHEVVMSKPVLYLPLLLLIIVIVLFGLYTFRDLSRSIERRKTKREL 180

Query: 181 QNFDRKLDEEGIDLFSDPRKAIIELYKKAVLWLEILGIPYKESWTHWEHAGKVTHKRIAY 240
           QNFDRKLDEEGIDLFSDPRKAIIELYKKAVLWLEILGIPYKESWTHWEHAGKVTHKRIAY
Sbjct: 181 QNFDRKLDEEGIDLFSDPRKAIIELYKKAVLWLEILGIPYKESWTHWEHAGKVTHKRIAY 240

Query: 241 VELVKLFEKAKYAPEKVTRRDALKAYELYMVIRGED 276
           VELVKLFEKAKYAPEKVTRRDALKAYELYMVIRGED
Sbjct: 241 VELVKLFEKAKYAPEKVTRRDALKAYELYMVIRGED 276


>pir||E71126 hypothetical protein PH0779 - Pyrococcus horikoshii
           >gi|3257188|dbj|BAA29871.1| (AP000003) 269aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 269
           
 Score =  223 bits (562), Expect = 2e-57
 Identities = 118/269 (43%), Positives = 171/269 (62%), Gaps = 6/269 (2%)

Query: 11  VKKSVLGLFIALMILIGTMQSNAVTSWGGVGRTLGVIVLLMFSIYLVVGIFLLILAFMSG 70
           VK  +L  FI ++ ++G M      +  G  R L + + L    Y+ + +  L+LA ++ 
Sbjct: 4   VKLKILITFIGILFILGLMLGAEFNNKSGSERILELFLTLFIFGYIFIAMLFLLLAILNM 63

Query: 71  RDIGIRAPKGSAFNPLFLLL--SMVLAMFYFMFILKIASMRNVKRIALNTTYSPNASFII 128
             I  R  K      + L++  S++LA ++ + I  +  +  VK IA  +   P    +I
Sbjct: 64  EKIKGRHSKAGPLGNIILIVVSSLMLATYFLVIIKLLPHLGRVKEIANTSQIPPQNPLVI 123

Query: 129 PSPET-KVHEVVMSKPVLYLPLLLLIIVIVLFGLYTFRDLSRSIERRKTKRELQNFDRKL 187
           PS  T K  E+ ++    Y+P+++ +I + L  +   + +S   E+R+ K+ELQ FD  L
Sbjct: 124 PSTFTRKGTELGLA---FYVPVIIFMIALFLLSVSASKSISTIAEKRRIKKELQKFDASL 180

Query: 188 DEEGIDLFSDPRKAIIELYKKAVLWLEILGIPYKESWTHWEHAGKVTHKRIAYVELVKLF 247
           +E GID+FS+PR+A+IELYKKAVLWLE+LGIPY+ESWTHWEHA KVT+KR AYVEL KLF
Sbjct: 181 EERGIDMFSNPREAVIELYKKAVLWLEVLGIPYRESWTHWEHASKVTYKRKAYVELAKLF 240

Query: 248 EKAKYAPEKVTRRDALKAYELYMVIRGED 276
           EKAKYAPEKVT  DA +AY+LYMVI+GE+
Sbjct: 241 EKAKYAPEKVTINDAERAYKLYMVIKGEE 269


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.143    0.414 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92753654
Number of Sequences: 2977
Number of extensions: 3665547
Number of successful extensions: 16152
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16148
Number of HSP's gapped (non-prelim): 2
length of query: 276
length of database: 189,106,746
effective HSP length: 53
effective length of query: 223
effective length of database: 157,386,935
effective search space: 35097286505
effective search space used: 35097286505
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 164 (68.3 bits)