BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0847 (PAB0847) DE:Hypothetical protein
         (134 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75037 hypothetical protein PAB0847 - Pyrococcus abyssi (st...   263  6e-70
pir||C71126 hypothetical protein PH0777 - Pyrococcus horikoshii ...   115  2e-25

>pir||B75037 hypothetical protein PAB0847 - Pyrococcus abyssi (strain Orsay)
           >gi|5458704|emb|CAB50191.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 134
           
 Score =  263 bits (665), Expect = 6e-70
 Identities = 134/134 (100%), Positives = 134/134 (100%)

Query: 1   MRIKAKDAIPVLIAILALALGSYIARWILALIVAGILFAYSLEGWEPKLPNLNIRRERND 60
           MRIKAKDAIPVLIAILALALGSYIARWILALIVAGILFAYSLEGWEPKLPNLNIRRERND
Sbjct: 1   MRIKAKDAIPVLIAILALALGSYIARWILALIVAGILFAYSLEGWEPKLPNLNIRRERND 60

Query: 61  EVRRLSLIIKRTEFSETSRKIVIEHLKEAYRMIGINVNENPPKAIKLLQDDPSNFSRLDE 120
           EVRRLSLIIKRTEFSETSRKIVIEHLKEAYRMIGINVNENPPKAIKLLQDDPSNFSRLDE
Sbjct: 61  EVRRLSLIIKRTEFSETSRKIVIEHLKEAYRMIGINVNENPPKAIKLLQDDPSNFSRLDE 120

Query: 121 ILRMVEEDINERSG 134
           ILRMVEEDINERSG
Sbjct: 121 ILRMVEEDINERSG 134


>pir||C71126 hypothetical protein PH0777 - Pyrococcus horikoshii
           >gi|3257186|dbj|BAA29869.1| (AP000003) 135aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 135
           
 Score =  115 bits (285), Expect = 2e-25
 Identities = 57/131 (43%), Positives = 85/131 (64%), Gaps = 6/131 (4%)

Query: 3   IKAKDAIPVLIAILALALGSYIARWILALIVAGILFAYSLEGWEPKLPNLNIRRERNDEV 62
           +++K  IP++ A+ A+   +Y+ RWI AL+ A ILFAYSLEGWEPKLPN++ R    DE+
Sbjct: 1   MRSKYIIPLIFALGAVLFRNYLVRWISALLTAMILFAYSLEGWEPKLPNISFRTSMKDEI 60

Query: 63  RRLSLIIKRTEFSETSRKIVIEHLKEAYRMIGINVNENPPKAIKLLQDDPSNFSRLDEIL 122
            RL+ I+KR   S  SRKI++EH+++ Y ++G+   E+        + +  +   L+ IL
Sbjct: 61  ERLARIVKRANTSPISRKIILEHVRDIYNILGLEFREDE------FRWEGDSIRDLERIL 114

Query: 123 RMVEEDINERS 133
             VEEDIN RS
Sbjct: 115 TKVEEDINGRS 125


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.140    0.390 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46372811
Number of Sequences: 2977
Number of extensions: 1691563
Number of successful extensions: 9142
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9139
Number of HSP's gapped (non-prelim): 2
length of query: 134
length of database: 189,106,746
effective HSP length: 54
effective length of query: 80
effective length of database: 156,788,448
effective search space: 12543075840
effective search space used: 12543075840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)