BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0848 (moxR-3) DE:methanol dehydrogenase regulatory protein
(moxR-3)
(314 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75037 methanol dehydrogenase regulatory protein (moxr-3) P... 612 e-174
pir||B71126 hypothetical protein PH0776 - Pyrococcus horikoshii ... 567 e-161
pir||F71139 hypothetical protein PH0329 - Pyrococcus horikoshii ... 359 3e-98
pir||B75012 methanol dehydrogenase regulatory protein (moxr-1) P... 354 5e-97
gi|11500001 methanol dehydrogenase regulatory protein (moxR) [Ar... 350 1e-95
pir||B70947 probable moxR3 protein - Mycobacterium tuberculosis ... 344 8e-94
pir||T35917 probable regulatory protein - Streptomyces coelicolo... 337 1e-91
dbj|BAB04323.1| (AP001509) methanol dehydrogenase regulatory pro... 337 1e-91
pir||G71146 hypothetical protein PH0385 - Pyrococcus horikoshii ... 334 9e-91
pir||D75008 methanol dehydrogenase regulatory protein (moxr-2) P... 328 7e-89
gb|AAG18829.1| (AE004987) methanol dehydrogenase regulatory prot... 324 8e-88
pir||C69791 methanol dehydrogenase regulation homolog yeaC - Bac... 322 4e-87
pir||H72289 hypothetical protein TM1132 - Thermotoga maritima (s... 309 2e-83
pir||D72767 hypothetical protein APE0127 - Aeropyrum pernix (str... 307 1e-82
dbj|BAB04450.1| (AP001509) unknown conserved protein [Bacillus h... 305 6e-82
pir||D75460 MoxR-related protein - Deinococcus radiodurans (stra... 300 1e-80
pir||E70792 probable regulatory protein - Mycobacterium tubercul... 300 2e-80
pir||H70321 conserved hypothetical protein aq_240 - Aquifex aeol... 300 2e-80
pir||T34964 probable regulatory protein - Streptomyces coelicolo... 298 4e-80
emb|CAB90929.1| (AL355774) putative regulatory protein [Streptom... 298 5e-80
pir||F72606 probable methanol dehydrogenase regulator APE1317 - ... 295 5e-79
emb|CAC12049.1| (AL445065) regulatory protein moxR related prote... 287 1e-76
pir||B70874 probable moxR protein - Mycobacterium tuberculosis (... 286 3e-76
pir||C83106 conserved hypothetical protein PA4322 [imported] - P... 284 7e-76
pir||S75782 methanol dehydrogenase regulatory protein - Synechoc... 283 2e-75
pir||S74593 MorR protein - Synechocystis sp. (strain PCC 6803) >... 283 2e-75
pir||H70121 methanol dehydrogenase regulator (moxR) homolog - Ly... 282 3e-75
pir||G82635 methanol dehydrogenase regulatory protein XF1813 [im... 281 8e-75
pir||G83261 conserved hypothetical protein PA3070 [imported] - P... 277 2e-73
emb|CAB98184.1| (AJ276161) putative regulatory protein [Streptom... 275 4e-73
pir||H83287 conserved hypothetical protein PA2875 [imported] - P... 274 8e-73
emb|CAA65298.1| (X96434) moxR [Borrelia burgdorferi] >gi|2689172... 273 2e-72
pir||B75496 moxR protein - Deinococcus radiodurans (strain R1) >... 271 7e-72
pir||H82493 MoxR-related protein VCA0175 [imported] - Vibrio cho... 263 3e-69
gb|AAC46196.1| (AF002133) transcriptional regulator [Mycobacteri... 214 9e-55
pir||S43189 hypothetical protein - Pseudomonas aeruginosa >gi|46... 209 3e-53
gb|AAB91544.1| (AF017119) MoxR homolog [Allochromatium vinosum] 196 3e-49
gb|AAB62561.1| (AF006054) MoxR [Mycobacterium tuberculosis] 193 2e-48
dbj|BAA23276.1| (AB004097) ORF4 [Hyphomicrobium methylovorum] 146 3e-34
sp|P30621|MOXR_METEX MOXR PROTEIN (MXAR PROTEIN) >gi|1771259|emb... 143 3e-33
sp|P29901|MOXR_PARDE MOXR PROTEIN >gi|94691|pir||D41377 methanol... 127 1e-28
pir||E69109 conserved hypothetical protein MTH1814 - Methanobact... 74 2e-12
pir||C65178 hypothetical 57.4 kD protein in asnA-kup intergenic ... 69 6e-11
sp|P31473|YIEN_ECOLI HYPOTHETICAL 56.4 KD PROTEIN IN ASNA-KUP IN... 69 6e-11
>pir||C75037 methanol dehydrogenase regulatory protein (moxr-3) PAB0848 -
Pyrococcus abyssi (strain Orsay)
>gi|5458705|emb|CAB50192.1| (AJ248287) methanol
dehydrogenase regulatory protein (moxR-3) [Pyrococcus
abyssi]
Length = 314
Score = 612 bits (1562), Expect = e-174
Identities = 314/314 (100%), Positives = 314/314 (100%)
Query: 1 MNVQVKAQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALG 60
MNVQVKAQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALG
Sbjct: 1 MNVQVKAQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALG 60
Query: 61 LEFRRVQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLE 120
LEFRRVQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLE
Sbjct: 61 LEFRRVQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLE 120
Query: 121 AMQERQVTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEK 180
AMQERQVTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEK
Sbjct: 121 AMQERQVTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEK 180
Query: 181 EILKRRIERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIE 240
EILKRRIERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIE
Sbjct: 181 EILKRRIERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIE 240
Query: 241 VGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDI 300
VGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDI
Sbjct: 241 VGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDI 300
Query: 301 IKKILEKVPVPKFE 314
IKKILEKVPVPKFE
Sbjct: 301 IKKILEKVPVPKFE 314
>pir||B71126 hypothetical protein PH0776 - Pyrococcus horikoshii
>gi|3257185|dbj|BAA29868.1| (AP000003) 314aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 314
Score = 567 bits (1445), Expect = e-161
Identities = 282/314 (89%), Positives = 306/314 (96%)
Query: 1 MNVQVKAQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALG 60
M+VQ KAQ V+EEVKKAIVGKDNVLKL+LA++LADGHILIEDLPGLAKTLMAKSFAKALG
Sbjct: 1 MDVQKKAQMVIEEVKKAIVGKDNVLKLVLATILADGHILIEDLPGLAKTLMAKSFAKALG 60
Query: 61 LEFRRVQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLE 120
LEF+RVQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLE
Sbjct: 61 LEFKRVQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLE 120
Query: 121 AMQERQVTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEK 180
AMQERQVTIEG TY+LP+PFIVIATQNPIEQEGTYPLPEAQLDRFLVRLR+GYPSK+EEK
Sbjct: 121 AMQERQVTIEGVTYKLPKPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRMGYPSKDEEK 180
Query: 181 EILKRRIERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIE 240
EIL+RRIERK D+VEI TVLSP+D+L+MQRE+E+VYVSDAIIEYITSLVWATREDKR+IE
Sbjct: 181 EILRRRIERKQDEVEIETVLSPKDVLKMQREVEDVYVSDAIIEYITSLVWATREDKRDIE 240
Query: 241 VGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDI 300
+GVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVA+PALSHRIILKRELWY R+ QE +
Sbjct: 241 IGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAIPALSHRIILKRELWYTRVSQESV 300
Query: 301 IKKILEKVPVPKFE 314
I+KILE+VPVPKFE
Sbjct: 301 IEKILERVPVPKFE 314
>pir||F71139 hypothetical protein PH0329 - Pyrococcus horikoshii
>gi|3256720|dbj|BAA29403.1| (AP000002) 317aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 317
Score = 359 bits (911), Expect = 3e-98
Identities = 187/311 (60%), Positives = 239/311 (76%), Gaps = 5/311 (1%)
Query: 6 KAQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRR 65
+ +K++E + +G ++V++ +LA L +G+IL ED PGL KTL+AK+FAK LGL+F+R
Sbjct: 4 EVKKIIEAIGDIFIGHEDVIRKVLAVALVNGNILFEDYPGLGKTLLAKAFAKILGLKFKR 63
Query: 66 VQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQER 125
+QFTPDLLP+DI+G V+ + FE KGP+FTNILLADEINRAPPKTQSALLEAM+ER
Sbjct: 64 IQFTPDLLPADIIGTKVWKPEKGAFEVVKGPIFTNILLADEINRAPPKTQSALLEAMEER 123
Query: 126 QVTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYP-SKEEEKEILK 184
QVTIEG T++L RPF +IATQNP+E EGTYPLPEAQLDRFLVRL +GYP ++E+E EILK
Sbjct: 124 QVTIEGETFKLERPFFIIATQNPLELEGTYPLPEAQLDRFLVRLNIGYPRNEEDELEILK 183
Query: 185 RRIERKMDD--VEINTVLSPEDILRMQREIEE-VYVSDAIIEYITSLVWATREDKREIEV 241
R+ DD +I+ ++S ED +RMQ E+E V + D I+ YI LV RED+R IE
Sbjct: 184 ARLRWGKDDPTSDISPIISREDFIRMQEEVERGVIIHDDILRYIVRLVRRIREDER-IEA 242
Query: 242 GVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDII 301
G SPRG LAL+KL++A A IEGR YVIPDDVK AV AL+HRI+LK E R E+II
Sbjct: 243 GPSPRGGLALMKLAKANAFIEGRSYVIPDDVKYFAVEALAHRIVLKPEYSLERGIAEEII 302
Query: 302 KKILEKVPVPK 312
+++LE+VPVPK
Sbjct: 303 REVLEEVPVPK 313
>pir||B75012 methanol dehydrogenase regulatory protein (moxr-1) PAB1276 -
Pyrococcus abyssi (strain Orsay)
>gi|5459050|emb|CAB50536.1| (AJ248288) methanol
dehydrogenase regulatory protein (moxR-1) [Pyrococcus
abyssi]
Length = 317
Score = 354 bits (900), Expect = 5e-97
Identities = 184/311 (59%), Positives = 237/311 (76%), Gaps = 5/311 (1%)
Query: 6 KAQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRR 65
+ ++V+ + + +GK V++ + A+ L +G++L ED PGL KTL+AK+FAK LGL +RR
Sbjct: 4 RIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRR 63
Query: 66 VQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQER 125
+QFTPDLLP+DI+G V+ + FE KGP+FTN+LLADEINRAPPKTQSALLEAM+ER
Sbjct: 64 IQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEER 123
Query: 126 QVTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYP-SKEEEKEILK 184
QVTIEG T++L +PF VIATQNP+E EGTYPLPEAQLDRFLVRL VGYP S++EE EILK
Sbjct: 124 QVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILK 183
Query: 185 RRIERKMDD--VEINTVLSPEDILRMQREIE-EVYVSDAIIEYITSLVWATREDKREIEV 241
R+ DD V++ VLS E+ L MQR +E EV V D I+ YI +V RED+R +E
Sbjct: 184 ARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDER-VEA 242
Query: 242 GVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDII 301
G SPRG+LAL+KLS+A A IEGRD+VIPDDVKA + ALSHRI+LK E R + +I+
Sbjct: 243 GPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIV 302
Query: 302 KKILEKVPVPK 312
++ + +VPVPK
Sbjct: 303 EEAVNEVPVPK 313
>gi|11500001 methanol dehydrogenase regulatory protein (moxR) [Archaeoglobus
fulgidus] >gi|7428883|pir||B69553 methanol dehydrogenase
regulatory protein (moxR) homolog - Archaeoglobus
fulgidus >gi|2650675|gb|AAB91247.1| (AE001108) methanol
dehydrogenase regulatory protein (moxR) [Archaeoglobus
fulgidus]
Length = 324
Score = 350 bits (889), Expect = 1e-95
Identities = 179/309 (57%), Positives = 238/309 (76%), Gaps = 6/309 (1%)
Query: 9 KVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQF 68
++++ V VG N+++ MLA+ L +G+IL ED PGL KTL+AK FA+ +G ++RRVQF
Sbjct: 15 RIVKAVCDVYVGDKNLVEKMLAAALTNGNILFEDYPGLGKTLLAKVFARVIGADYRRVQF 74
Query: 69 TPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVT 128
TPDLLPSDI+GV ++ FEF KGP+FTN+LLADEINR+PPKTQ+ALLEAM+E+Q+T
Sbjct: 75 TPDLLPSDIIGVKIWRGD--RFEFVKGPIFTNVLLADEINRSPPKTQAALLEAMEEKQIT 132
Query: 129 IEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYP-SKEEEKEILKRRI 187
+EG T+ L PF V+ATQNPIEQEGTYPLPEAQ+DRF++R+R GYP S EEE EIL+RRI
Sbjct: 133 VEGETFSLSMPFFVLATQNPIEQEGTYPLPEAQMDRFMLRMRPGYPESIEEEMEILRRRI 192
Query: 188 ERKMDD--VEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSP 245
+ DD ++ V+S E R+Q +E VYV +I++YI+ LV ATRE + +E+G SP
Sbjct: 193 SWRKDDPTEDVEPVVSLETFRRIQDAVEAVYVDKSILKYISELVRATREHEL-VELGSSP 251
Query: 246 RGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKIL 305
RG LALLKL+RA A ++GRD+VIPDDVK VAV AL+HR+ILK E +R E+++++IL
Sbjct: 252 RGGLALLKLARALAVMDGRDFVIPDDVKRVAVEALAHRVILKFEYAVEGLRAEEVVEEIL 311
Query: 306 EKVPVPKFE 314
V VPK+E
Sbjct: 312 NSVRVPKYE 320
>pir||B70947 probable moxR3 protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2827574|emb|CAA16629.1| (AL021646) moxR3
[Mycobacterium tuberculosis]
Length = 320
Score = 344 bits (873), Expect = 8e-94
Identities = 165/305 (54%), Positives = 231/305 (75%), Gaps = 1/305 (0%)
Query: 8 QKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQ 67
+ VL+E+++ +VGK + L L+L ++LA GH+LIEDLPGL KTL+A+SFA ALGL+F RVQ
Sbjct: 13 EAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTRVQ 72
Query: 68 FTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQV 127
FTPDLLP+D+LG +++ ++ FEF+ GP+FTN+LLADEINR PPKTQ+ALLEAM E QV
Sbjct: 73 FTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQV 132
Query: 128 TIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRI 187
+I+G T++L PFIV+AT NPIE EGTYPLPEAQLDRF +RL + Y S+ +E +L+RR+
Sbjct: 133 SIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRRRL 192
Query: 188 ERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRG 247
ER D +N V+ D+L M+ +E+V V + ++ Y+ SL ATR ++ VG SPR
Sbjct: 193 ERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHP-QVAVGASPRA 251
Query: 248 SLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEK 307
L L++LSRA A + GRDYVIP+DVK +A A++HRI L+ E+W +I D++ ++L +
Sbjct: 252 ELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLRR 311
Query: 308 VPVPK 312
+PVP+
Sbjct: 312 LPVPR 316
>pir||T35917 probable regulatory protein - Streptomyces coelicolor
>gi|4160330|emb|CAA22801.1| (AL035212) putative
regulatory protein [Streptomyces coelicolor A3(2)]
Length = 332
Score = 337 bits (855), Expect = 1e-91
Identities = 160/306 (52%), Positives = 229/306 (74%), Gaps = 1/306 (0%)
Query: 6 KAQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRR 65
+A VL E+ +A+VGK + L+ ++ ++LA GH+L+EDLPGL KTL+A+SFA LGL+FRR
Sbjct: 18 QAGAVLREIGRAVVGKPDALEHVMLAVLAGGHVLVEDLPGLGKTLLARSFATTLGLDFRR 77
Query: 66 VQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQER 125
+QFTPDLLPSD+ G +++Q++ E F GPVFT++LLADEINR PPKTQ+ALLEAM E
Sbjct: 78 IQFTPDLLPSDVTGTPLYDQRSGEMVFHPGPVFTHLLLADEINRTPPKTQAALLEAMAES 137
Query: 126 QVTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKR 185
QVT++G T L PF+VIAT NP+E EGTY LPEAQLDRF +R+R+GY + EE +L+
Sbjct: 138 QVTVDGETRPLADPFLVIATANPVEYEGTYSLPEAQLDRFQLRVRMGYLAAREELAMLRA 197
Query: 186 RIERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSP 245
RI+R + + + P+D++ + +E V + D ++EY +LV ATR D +I +G SP
Sbjct: 198 RIDRAAPEAVLERLAGPDDVVAWRAVVERVEIDDDLLEYAVALVGATR-DHPQISIGASP 256
Query: 246 RGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKIL 305
RG LAL++L+RA A ++GRDYV+P+DVK +AVPAL+HR+ L+ ELW + +D++++I+
Sbjct: 257 RGGLALVQLARARAVLDGRDYVVPEDVKGLAVPALAHRVSLRPELWVREMSTDDVLREIV 316
Query: 306 EKVPVP 311
+ V P
Sbjct: 317 DSVGTP 322
>dbj|BAB04323.1| (AP001509) methanol dehydrogenase regulatory protein [Bacillus
halodurans]
Length = 318
Score = 337 bits (854), Expect = 1e-91
Identities = 158/303 (52%), Positives = 232/303 (76%), Gaps = 2/303 (0%)
Query: 9 KVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQF 68
+V+E V++ +VGK ++L L ++ A GH+L+ED+PG+ KT++ K+ A++LG +F+R+QF
Sbjct: 10 RVIENVERVVVGKRQEIELSLVALFASGHVLLEDVPGVGKTMLVKAIARSLGADFKRIQF 69
Query: 69 TPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVT 128
TPDLLPSD+ GV+++NQKT +FEF+ GP+ N++LADEINR PKTQSALLEA++E VT
Sbjct: 70 TPDLLPSDVTGVSIYNQKTQQFEFRPGPIMANVVLADEINRTSPKTQSALLEALEEGSVT 129
Query: 129 IEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRIE 188
IEG + L +PF V+ATQNP+E GTYPLPEAQLDRFL RL++GYP +EE ++LK R+E
Sbjct: 130 IEGKSLVLSKPFFVMATQNPVEYAGTYPLPEAQLDRFLFRLQLGYPKPDEELDVLK-RLE 188
Query: 189 RKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRGS 248
+K E++ V+ E+++++Q EI++V+V D + YI +V TR+ ++ +E+GVSPRGS
Sbjct: 189 KKHPIQELSPVMETEEVIQLQEEIKDVFVEDNVKAYIVEIVNLTRKHQK-VELGVSPRGS 247
Query: 249 LALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEKV 308
+A++K ++AYA I+GRDYVIPDD+K +A ALSHR+IL E E+II +L++
Sbjct: 248 IAMMKAAQAYAMIQGRDYVIPDDIKTLAPFALSHRLILTAEAKMSGTDHEEIIHDVLQQA 307
Query: 309 PVP 311
VP
Sbjct: 308 KVP 310
>pir||G71146 hypothetical protein PH0385 - Pyrococcus horikoshii
>gi|3256777|dbj|BAA29460.1| (AP000002) 312aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 312
Score = 334 bits (847), Expect = 9e-91
Identities = 166/300 (55%), Positives = 232/300 (77%), Gaps = 3/300 (1%)
Query: 12 EEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFTPD 71
EEV KA+VGKD+V++L+ ++LA+GH++IE +PG+AKT +AKSFA+ LGL+F R+Q TPD
Sbjct: 15 EEVHKAVVGKDDVIELLAIALLAEGHVMIEGVPGVAKTTIAKSFAQVLGLKFSRIQLTPD 74
Query: 72 LLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVTIEG 131
LLP+DILG ++Q ++ KKGP+F N++LADEINRA PKTQSALLEAMQERQVTIEG
Sbjct: 75 LLPADILGTVYYDQSDGLWKIKKGPIFANVVLADEINRAQPKTQSALLEAMQERQVTIEG 134
Query: 132 NTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRIERKM 191
T+ L +PF+VIAT+NPIE EG Y LPEAQ+DRF++ +++GYP++EEE E+L+++ ++
Sbjct: 135 RTFPLEKPFMVIATKNPIEFEGVYNLPEAQVDRFMLNIKIGYPTREEEVEMLRKKDRGEL 194
Query: 192 DDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRGSLAL 251
E+ + S E I+RM E++ V S+ ++ Y+ +V TR+D+R I VG SPR S L
Sbjct: 195 G--EVGRIFSREQIVRMINEVKRVKTSEEVLHYLYEIVNETRKDERLI-VGASPRASEHL 251
Query: 252 LKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEKVPVP 311
L S+A A +EGRDYVIPDDVK +AVP L+HR+++K E I+ EDI+++ILE+V VP
Sbjct: 252 LYASKAKAFLEGRDYVIPDDVKFLAVPVLAHRLLIKAEHEIEGIKGEDIVREILERVEVP 311
>pir||D75008 methanol dehydrogenase regulatory protein (moxr-2) PAB1296 -
Pyrococcus abyssi (strain Orsay)
>gi|5459020|emb|CAB50506.1| (AJ248288) methanol
dehydrogenase regulatory protein (moxR-2) [Pyrococcus
abyssi]
Length = 309
Score = 328 bits (831), Expect = 7e-89
Identities = 162/300 (54%), Positives = 228/300 (76%), Gaps = 3/300 (1%)
Query: 12 EEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFTPD 71
+E+ KA+VGKD+V++L+ ++L++GH++IE +PG+AKT +AK+FA+ALGL+F R+Q TPD
Sbjct: 12 KEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPD 71
Query: 72 LLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVTIEG 131
L P+DI+G ++Q ++ KKGP+F N++LADEINRA PKTQSALLEAMQERQVTIEG
Sbjct: 72 LFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEG 131
Query: 132 NTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRIERKM 191
TY+L RPF++IAT+NP+E EG Y LPEAQLDRF+++++VGYPSKEEE E+LKR+ +
Sbjct: 132 RTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKRKDKGLF 191
Query: 192 DDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRGSLAL 251
E V S + I++M V +SD ++EY+ ++ TR DKR + VG SPR + L
Sbjct: 192 S--EAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKR-LLVGASPRAAEHL 248
Query: 252 LKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEKVPVP 311
L S+A A +EGRDYVIPDD+K++AVP L+HR+++K E I E ++++IL KV VP
Sbjct: 249 LYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVEVP 308
>gb|AAG18829.1| (AE004987) methanol dehydrogenase regulatory protein; MoxR
[Halobacterium sp. NRC-1]
Length = 318
Score = 324 bits (822), Expect = 8e-88
Identities = 159/302 (52%), Positives = 217/302 (71%), Gaps = 1/302 (0%)
Query: 10 VLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFT 69
V++EV A++ L+ +L LADGH+L+ED+PG KTL A+S A ALGLEF RVQFT
Sbjct: 13 VVDEVAAAVIADREFLETVLVGFLADGHVLLEDVPGTGKTLTARSVATALGLEFSRVQFT 72
Query: 70 PDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVTI 129
PDLLP+D+LG +VFN+++ EFEF+ GPVF N++LADEINRAPPKTQ+ALLEAM+E QVTI
Sbjct: 73 PDLLPTDVLGTHVFNERSREFEFRPGPVFANVVLADEINRAPPKTQAALLEAMEEGQVTI 132
Query: 130 EGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRIER 189
+G T LP PF VIATQNP++QEGT+PLPEAQLDRF+V +GYP E+E+L RR R
Sbjct: 133 DGETMALPEPFFVIATQNPVDQEGTFPLPEAQLDRFVVSAAIGYPDAAGERELLARRASR 192
Query: 190 KMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRGSL 249
++ VL E + ++R E+V V + EY+ ++ ATRE R +EVGVSPRG+
Sbjct: 193 DARSPTVDAVLDDERVRALRRASEDVRVGSDLREYMVAVARATREHPR-VEVGVSPRGTQ 251
Query: 250 ALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEKVP 309
L + +RA A + GR+YV+P DVK +A L+HR++L + + + I++ +L++VP
Sbjct: 252 RLFEAARARAVVAGREYVVPADVKGLAGSVLAHRLVLTPDAAVENVAKGGIVEGVLDEVP 311
Query: 310 VP 311
VP
Sbjct: 312 VP 313
>pir||C69791 methanol dehydrogenase regulation homolog yeaC - Bacillus subtilis
>gi|1708641|gb|AAB62308.1| (U51115) YeaC [Bacillus
subtilis] >gi|2632946|emb|CAB12452.1| (Z99107) similar
to methanol dehydrogenase regulation [Bacillus subtilis]
Length = 320
Score = 322 bits (816), Expect = 4e-87
Identities = 155/301 (51%), Positives = 225/301 (74%), Gaps = 4/301 (1%)
Query: 12 EEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFTPD 71
E + + +VGK ++ L LA++LA GH+L+ED+PG+ KT+M ++ AK++G +F+R+QFTPD
Sbjct: 16 EHINRVMVGKRDIAILSLAALLAKGHVLLEDVPGVGKTMMVRALAKSIGADFKRIQFTPD 75
Query: 72 LLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVTIEG 131
LLPSD+ GV+++N KT+EFE++ GP+ NI+LADEINR PKTQSALLEAM+E VT++G
Sbjct: 76 LLPSDVTGVSIYNAKTMEFEYRPGPIMGNIVLADEINRTSPKTQSALLEAMEEGSVTVDG 135
Query: 132 NTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRIERKM 191
+T QL PF V+ATQNP+E EGTYPLPEAQLDRFL +LR+GYPS EE ++L ++ K
Sbjct: 136 HTMQLADPFFVMATQNPVEYEGTYPLPEAQLDRFLFKLRMGYPSFNEELDVLS--LQEKS 193
Query: 192 DDVE-INTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRGSLA 250
+E + V++ ED + +QRE++ V D+I EYI +V TR+ +++GVSPRGS+A
Sbjct: 194 HPIETLEPVIAKEDFIFLQREVQNVRADDSIKEYIVEIVQKTRQHP-SVQLGVSPRGSIA 252
Query: 251 LLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEKVPV 310
L+K ++AYA + RDYVIPDD++ +A L HR++L E + I+ E I+++I+ V V
Sbjct: 253 LMKAAQAYALLHHRDYVIPDDIQYLAPFTLPHRMMLHPEAKFEGIQAEAIVREIMSAVKV 312
Query: 311 P 311
P
Sbjct: 313 P 313
>pir||H72289 hypothetical protein TM1132 - Thermotoga maritima (strain MSB8)
>gi|4981679|gb|AAD36208.1|AE001771_1 (AE001771) moxR
protein, putative [Thermotoga maritima]
Length = 305
Score = 309 bits (784), Expect = 2e-83
Identities = 147/305 (48%), Positives = 231/305 (75%), Gaps = 2/305 (0%)
Query: 8 QKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQ 67
++V+ ++K I GK +++++A++LA GH+L+ED+PG+ KT++A++ A +LG++FRRVQ
Sbjct: 3 ERVINNIEKVIKGKREAIEVVVAALLAKGHVLMEDVPGVGKTMLARALALSLGVDFRRVQ 62
Query: 68 FTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQV 127
FTPDLLP+D+ G+ ++++K +F FKKGPVFT++LLADEINRA P+TQSALLEAM E QV
Sbjct: 63 FTPDLLPTDLTGLYIYDRKKEDFVFKKGPVFTDVLLADEINRATPRTQSALLEAMAEGQV 122
Query: 128 TIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRI 187
T++G T++L F VIATQNPIE EGT+PLPEAQLDRF++ +++GYP +E E ++L +
Sbjct: 123 TVDGVTHRLSERFFVIATQNPIEYEGTFPLPEAQLDRFMICVKMGYPDEEAEIQMLTSQ- 181
Query: 188 ERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRG 247
E++ ++ V++P+++ +Q+++ V+VSD + +YI + ATR + + +G+SPRG
Sbjct: 182 EKEHPISQLEPVMNPDELSELQKKVRNVFVSDEVKKYIVDIASATR-NHPSLLLGMSPRG 240
Query: 248 SLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEK 307
S+AL+ S A A ++GRD+ +PDDVK AV + HR+I E R ++EDI+++IL++
Sbjct: 241 SIALMHFSMALAFMDGRDFTLPDDVKRAAVYVIPHRVIQSAESKLKREKKEDIVREILDR 300
Query: 308 VPVPK 312
V V K
Sbjct: 301 VKVVK 305
>pir||D72767 hypothetical protein APE0127 - Aeropyrum pernix (strain K1)
>gi|5103517|dbj|BAA79038.1| (AP000058) 314aa long
hypothetical protein [Aeropyrum pernix]
Length = 314
Score = 307 bits (777), Expect = 1e-82
Identities = 152/303 (50%), Positives = 217/303 (71%), Gaps = 6/303 (1%)
Query: 9 KVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQF 68
+V EV + ++GK+ +KL LA+M+A GH+L+E +PG+AKT +AK+ A A GL F R+QF
Sbjct: 18 RVKREVARFVIGKEREVKLALATMIAKGHLLVEGVPGVAKTTLAKALAGAFGLRFSRIQF 77
Query: 69 TPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVT 128
TPD LPSD++G +V+ F F++GPVF N++LADE+NRA P+TQSA LEAMQE QVT
Sbjct: 78 TPDTLPSDVIGTHVYVGNG--FVFRRGPVFANVVLADEVNRANPRTQSAFLEAMQEGQVT 135
Query: 129 IEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRIE 188
+ G T++LP PFIV+AT NPIE EG YPLPEAQLDRF+ R+R+GYP++ EE +I+++ E
Sbjct: 136 VWGETHRLPSPFIVLATMNPIELEGVYPLPEAQLDRFMARIRLGYPTRVEEIKIIEKGDE 195
Query: 189 RKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRGS 248
++D+ + SPED+ R+Q +YV ++EYI +V TR + E+E+G SPR
Sbjct: 196 --VEDLNVEPAASPEDLKRLQDTARRIYVDRKLVEYIADIVRETRRIE-EVEIGASPRAG 252
Query: 249 LALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEKV 308
+ +LKLSRA A + GRD+ PDDVK A AL HR+ L R+++ + E +++ +L+KV
Sbjct: 253 IHILKLSRALALMSGRDFATPDDVKEAARAALPHRLKL-RKVYISKHSSEGLVEDVLKKV 311
Query: 309 PVP 311
P P
Sbjct: 312 PPP 314
>dbj|BAB04450.1| (AP001509) unknown conserved protein [Bacillus halodurans]
Length = 308
Score = 305 bits (772), Expect = 6e-82
Identities = 145/308 (47%), Positives = 220/308 (71%), Gaps = 4/308 (1%)
Query: 8 QKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQ 67
Q++L+++ + I+G+ ++L+L + LA GH+L+E +PG+ KT M + A +F+RVQ
Sbjct: 2 QQLLQQMDQVIIGQQKNIRLLLTAFLAGGHVLLEGVPGIGKTKMVRELADLTDGDFKRVQ 61
Query: 68 FTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQV 127
FTPD++PSD+ G +FN K +F+ KGPVFTN+LLADEINR PP+TQ+ALLEAM+ERQV
Sbjct: 62 FTPDMMPSDVTGNVIFNSKDNDFQMVKGPVFTNLLLADEINRTPPRTQAALLEAMEERQV 121
Query: 128 TIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRI 187
TI+G TYQLP PF V+ATQNPIE EGTYPLPEAQLDRFL +L V YPS E E +I+K +
Sbjct: 122 TIQGETYQLPDPFFVVATQNPIEYEGTYPLPEAQLDRFLFKLEVTYPSLEAELQIVKGHV 181
Query: 188 E---RKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVS 244
+ ++ + + S ++ ++++++++V V D+++EY+ +++ TRED+R + G S
Sbjct: 182 PFFVEQGNETDGRSAFSLTELRKLRQQLQQVVVEDSLMEYMVTIIRKTREDQRVMN-GAS 240
Query: 245 PRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKI 304
PR +AL+ +RA+A ++GR +V PDD+K + VPAL HR+ L ++ + I++
Sbjct: 241 PRAGIALMMAARAWALLDGRQFVTPDDIKTITVPALRHRLQLTPQVELEGETSDHFIQET 300
Query: 305 LEKVPVPK 312
L VPVP+
Sbjct: 301 LASVPVPR 308
>pir||D75460 MoxR-related protein - Deinococcus radiodurans (strain R1)
>gi|6458637|gb|AAF10492.1|AE001944_3 (AE001944)
MoxR-related protein [Deinococcus radiodurans]
Length = 354
Score = 300 bits (760), Expect = 1e-80
Identities = 155/305 (50%), Positives = 215/305 (69%), Gaps = 2/305 (0%)
Query: 7 AQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRV 66
A +++ V + +VGK++V +L LA++LA GH+L+ED PG KT++A++ A +LGL+FRRV
Sbjct: 21 AAEIIANVARVLVGKEDVTRLALAAILAGGHVLLEDAPGTGKTVLARALAASLGLDFRRV 80
Query: 67 QFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQ 126
QFTPDLLPSD+ GV+VF T FEF GP+FT ILLADEINRA PKTQSALLEAM E Q
Sbjct: 81 QFTPDLLPSDVTGVSVFRPATGTFEFVPGPIFTGILLADEINRATPKTQSALLEAMGEGQ 140
Query: 127 VTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRR 186
V+ G T++LP+PF+VIATQNP+E EGTY LPEAQLDRFL+RL VGYPS E+E E+L R
Sbjct: 141 VSESGVTHRLPQPFVVIATQNPVEHEGTYRLPEAQLDRFLLRLSVGYPSLEQEVEMLARL 200
Query: 187 IERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPR 246
ER ++ V +P D+L Q ++++V VS + Y+ +L +R+ ++ +G PR
Sbjct: 201 QERHPLQ-DLRAVAAPADLLAAQAQVQQVTVSSDVRRYLAALAARSRQHP-QVTLGGGPR 258
Query: 247 GSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILE 306
SLAL +++A A +GR +V PDDV+ A L+HR+ L E + D+++++L
Sbjct: 259 ASLALQGVAQALAWTQGRTFVTPDDVQQAAPGVLAHRLSLGIEARMQGLSAADVVREVLA 318
Query: 307 KVPVP 311
PVP
Sbjct: 319 AEPVP 323
>pir||E70792 probable regulatory protein - Mycobacterium tuberculosis (strain
H37RV) >gi|2960116|emb|CAA18014.1| (AL022121) moxR2
[Mycobacterium tuberculosis]
Length = 358
Score = 300 bits (759), Expect = 2e-80
Identities = 153/302 (50%), Positives = 210/302 (68%), Gaps = 3/302 (0%)
Query: 13 EVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFTPDL 72
EV KA+VG+D V+ ++ ++L GH+L+E +PG+AKTL+ ++ + AL LEF+RVQFTPDL
Sbjct: 58 EVAKAVVGQDGVISGLVIALLCRGHVLLEGVPGVAKTLIVRAMSAALQLEFKRVQFTPDL 117
Query: 73 LPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVTIEGN 132
+P D+ G V++ +T EF F+ GPVFTN+LLADEINR PPKTQ+ALLEAM+ERQV++EG
Sbjct: 118 MPGDVTGSLVYDARTAEFVFRPGPVFTNLLLADEINRTPPKTQAALLEAMEERQVSVEGE 177
Query: 133 TYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRIE--RK 190
LP PFIV ATQNPIE EGTY LPEAQLDRFL++L V P+++ E IL R
Sbjct: 178 PKPLPNPFIVAATQNPIEYEGTYQLPEAQLDRFLLKLNVTLPARDSEIAILDRHAHGFDP 237
Query: 191 MDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRGSLA 250
D IN V P ++ + + V V++ ++ YI +V ATR +++GVSPRG+ A
Sbjct: 238 RDLSAINPVAGPAELAAGREAVRHVLVANEVLGYIVDIVGATRSSP-ALQLGVSPRGATA 296
Query: 251 LLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEKVPV 310
LL +R++A + GRDYV PDDVKA+A P L HR++L+ E + ++ IL VPV
Sbjct: 297 LLGTARSWAWLSGRDYVTPDDVKAMARPTLRHRVMLRPEAELEGATPDGVLDGILASVPV 356
Query: 311 PK 312
P+
Sbjct: 357 PR 358
>pir||H70321 conserved hypothetical protein aq_240 - Aquifex aeolicus
>gi|2982960|gb|AAC06575.1| (AE000680) hypothetical
protein [Aquifex aeolicus]
Length = 300
Score = 300 bits (759), Expect = 2e-80
Identities = 150/302 (49%), Positives = 211/302 (69%), Gaps = 7/302 (2%)
Query: 10 VLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFT 69
++ EV K I GK+ V+K L +L+ GH+LIED+PG KT +A + A+ LGL F R+QFT
Sbjct: 6 IISEVSKVIKGKEEVIKNSLVCLLSGGHLLIEDVPGTGKTTLALALARVLGLSFSRIQFT 65
Query: 70 PDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVTI 129
DLLPSDI GV+VFNQKT EFEFKKGP+F+N++LADEINR PK QSALLEAM E+QV++
Sbjct: 66 SDLLPSDITGVSVFNQKTREFEFKKGPIFSNVVLADEINRGTPKVQSALLEAMAEKQVSV 125
Query: 130 EGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRIER 189
+GNTY+LP PF VIATQNPIE GTYPLPEAQLDRF +++ +GYPS+E+E +I+ + I
Sbjct: 126 DGNTYKLPEPFFVIATQNPIEYYGTYPLPEAQLDRFTMKISMGYPSEEDEVQIV-QGINP 184
Query: 190 KMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRGSL 249
+N + SPE+++R E++E+YVS + +I ++ R I +GVS RG +
Sbjct: 185 MEKVSSLNVLSSPEEVIRTVNEVKEIYVSPEVARFIVNIGNEVRNHPSVI-LGVSTRGLI 243
Query: 250 ALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEKVP 309
L SRA A RD+V+P+DV + + HRI ++ ++ E ++K+++ +VP
Sbjct: 244 HLANASRALAYFRERDFVVPEDVLDLLKYVIPHRIKVRE-----GVKAEAVLKEVISRVP 298
Query: 310 VP 311
+P
Sbjct: 299 IP 300
>pir||T34964 probable regulatory protein - Streptomyces coelicolor
>gi|5689966|emb|CAB52003.1| (AL109663) putative
regulatory protein [Streptomyces coelicolor A3(2)]
Length = 337
Score = 298 bits (756), Expect = 4e-80
Identities = 147/305 (48%), Positives = 216/305 (70%), Gaps = 4/305 (1%)
Query: 8 QKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQ 67
++V V+ I GK V++L L +LA+GH+LIED+PG+ KT++AK+ A+++ RR+Q
Sbjct: 10 ERVRGSVEDVIEGKPEVVRLSLTVLLAEGHLLIEDVPGVGKTMLAKALARSIDCSVRRIQ 69
Query: 68 FTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQV 127
FTPDLLPSDI GV++++Q+ +FEFK G +F +++ DEINRA PKTQSALLE+M+ERQV
Sbjct: 70 FTPDLLPSDITGVSIWDQQRRDFEFKPGAIFAQVVIGDEINRASPKTQSALLESMEERQV 129
Query: 128 TIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILK-RR 186
TI+G TY+LP PF+V+ATQNP+E EGTYPLPEAQ DRF+ R+ +GYPS E E ++L
Sbjct: 130 TIDGQTYELPSPFMVVATQNPVEMEGTYPLPEAQRDRFMARVSIGYPSPEAELQMLDVHG 189
Query: 187 IERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPR 246
+DD++ V DIL++ + V+V+D + Y LV ATR ++ +G SPR
Sbjct: 190 GASPLDDLQ--PVAHAHDILKLIEAVRGVHVADPVRRYAVDLVAATRTHP-DLRLGASPR 246
Query: 247 GSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILE 306
+L LL+ ++A AA+ GRDY +PDDV+A+AV L+HR++ + R E ++++IL+
Sbjct: 247 ATLHLLRAAKASAALSGRDYALPDDVQALAVAVLAHRLLPTAQAQLNRRTAEQVVQEILQ 306
Query: 307 KVPVP 311
+ VP
Sbjct: 307 RTAVP 311
>emb|CAB90929.1| (AL355774) putative regulatory protein [Streptomyces coelicolor
A3(2)]
Length = 329
Score = 298 bits (755), Expect = 5e-80
Identities = 151/315 (47%), Positives = 213/315 (66%), Gaps = 5/315 (1%)
Query: 2 NVQVKAQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGL 61
N + + + E+ KA+VG+D + ++ ++L GH+L+E +PG+AKTL+ ++ A A L
Sbjct: 16 NARAALEALRAEIAKAVVGQDAAVTGLVVALLCRGHVLLEGVPGVAKTLLVRTLAAATEL 75
Query: 62 EFRRVQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEA 121
+ +RVQFTPDL+PSD+ G V++ +T EF F+ GPVFTN+LLADEINR PPKTQS+LLEA
Sbjct: 76 DTKRVQFTPDLMPSDVTGSLVYDARTTEFSFQPGPVFTNLLLADEINRTPPKTQSSLLEA 135
Query: 122 MQERQVTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKE 181
M+ERQVT++G LP PF+V ATQNP+E EGTYPLPEAQLDRFL++L V P++++E +
Sbjct: 136 MEERQVTVDGTPRLLPEPFLVAATQNPVEYEGTYPLPEAQLDRFLLKLTVPLPTRQDEID 195
Query: 182 ILKRRI----ERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKR 237
+L R R + + V S D+ + E + VS I Y+ + ATRE
Sbjct: 196 VLTRHAAGFNPRDLRAAGVRPVASAADLEAARAEAAKTTVSPEITAYVVDICRATRESP- 254
Query: 238 EIEVGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQ 297
+ +GVSPRG+ ALL +RA+A + GRDYV PDDVKA+A+P L HR+ L+ E +
Sbjct: 255 SLTLGVSPRGATALLSTARAWAWLTGRDYVTPDDVKALALPTLRHRVQLRPEAEMEGVTA 314
Query: 298 EDIIKKILEKVPVPK 312
+ +I IL VPVP+
Sbjct: 315 DSVINAILAHVPVPR 329
>pir||F72606 probable methanol dehydrogenase regulator APE1317 - Aeropyrum
pernix (strain K1) >gi|5104994|dbj|BAA80308.1|
(AP000061) 306aa long hypothetical methanol
dehydrogenase regulator [Aeropyrum pernix]
Length = 306
Score = 295 bits (747), Expect = 5e-79
Identities = 148/303 (48%), Positives = 211/303 (68%), Gaps = 3/303 (0%)
Query: 9 KVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQF 68
++ EEV K IVGK+ ++L+LA++ A GH+L+E +PG+AKT MA++ A+A GL F R+QF
Sbjct: 7 RISEEVSKVIVGKEREIRLVLAALAARGHVLLEGVPGVAKTTMARAIARATGLRFSRIQF 66
Query: 69 TPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVT 128
TPD+LPSD++G V++Q+T EF F++GPVF N++LADE+NRA P+TQSA LEAMQE QVT
Sbjct: 67 TPDMLPSDVIGTMVYDQRTGEFVFRRGPVFANVVLADEVNRANPRTQSAFLEAMQEGQVT 126
Query: 129 IEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRIE 188
+ G T++LP PFIV+AT NPIE EG YPLPEAQLDRF+ R+ VG+PS EE EI+++
Sbjct: 127 VWGETHRLPSPFIVLATMNPIELEGVYPLPEAQLDRFMARVVVGHPSLEELVEIMEK--Y 184
Query: 189 RKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRGS 248
R + + + V PEDI+ Q + +V+V I YI +V T + + +G SPR +
Sbjct: 185 RSITEFPVEPVARPEDIVAAQEAVWKVHVDKNIKLYIARIVEETHKHP-GVSLGGSPRAA 243
Query: 249 LALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEKV 308
L+++ L+R A ++G YV PD VK A AL HR+IL E ++ E +++ +L V
Sbjct: 244 LSIMMLARGLALLDGLGYVTPDHVKEAARAALPHRLILTTEAKLEGLKPESVVEDVLSSV 303
Query: 309 PVP 311
P
Sbjct: 304 ETP 306
>emb|CAC12049.1| (AL445065) regulatory protein moxR related protein [Thermoplasma
acidophilum]
Length = 319
Score = 287 bits (727), Expect = 1e-76
Identities = 147/316 (46%), Positives = 214/316 (67%), Gaps = 10/316 (3%)
Query: 2 NVQVKAQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGL 61
N++ + E + K ++G +++ M ++L HIL+E +PGLAKT++A FA+ +
Sbjct: 9 NLRNTVISIEESIGKRVIGSRRIVRFMFIALLTGNHILMEGVPGLAKTMLANEFARHTRM 68
Query: 62 EFRRVQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEA 121
+FRR+QFTPD+LPSD+ G +FN ++ + EFK+GP+F N++LADEINR PPK QSALLEA
Sbjct: 69 KFRRIQFTPDMLPSDVTGTIMFNIESRKMEFKEGPIFANVILADEINRTPPKVQSALLEA 128
Query: 122 MQERQVTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKE 181
M+E QVTI G T+ LP+PF VIATQNPIEQEGT+PL EA +DRFL R + YPS+E+E
Sbjct: 129 MEETQVTIGGETHSLPKPFFVIATQNPIEQEGTFPLAEALMDRFLFRYYLEYPSREDELN 188
Query: 182 ILKRRIERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEV 241
IL K DD + VL P++I+ + +++ VY+S+ I +Y+ L+ TRE+ + +
Sbjct: 189 ILNS--IGKYDDPSL--VLMPDEIIEFRSQVDNVYISEEIKQYLVDLMRRTRENDL-VYL 243
Query: 242 GVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWY-----MRIR 296
G SPR + +K +RA A I GR YVIP+D+ +A L+HR+ILK E ++
Sbjct: 244 GASPRTTAKYMKAARANALISGRSYVIPEDITFMAFEILNHRLILKPEAIMDETDDPKLI 303
Query: 297 QEDIIKKILEKVPVPK 312
+ II ++L +VPVPK
Sbjct: 304 VKRIIDRVLSEVPVPK 319
>pir||B70874 probable moxR protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2791413|emb|CAA16007.1| (AL021184) moxR
[Mycobacterium tuberculosis]
Length = 377
Score = 286 bits (723), Expect = 3e-76
Identities = 144/313 (46%), Positives = 207/313 (66%), Gaps = 11/313 (3%)
Query: 8 QKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQ 67
++ + EVK+ IVG+D +++ ML +L+ GH+L+E +PG+AKTL ++FA+ +G F R+Q
Sbjct: 44 ERAIFEVKRIIVGQDQLVERMLVGLLSKGHVLLEGVPGVAKTLAVETFARVVGGTFSRIQ 103
Query: 68 FTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQV 127
FTPDL+P+DI+G ++ Q EF+ + GPV N LLADEINRAP K QSALLE MQER V
Sbjct: 104 FTPDLVPTDIIGTRIYRQGREEFDTELGPVVANFLLADEINRAPAKVQSALLEVMQERHV 163
Query: 128 TIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRI 187
+I G T+ +P PF+V+ATQNPIE EG YPLPEAQ DRFL ++ VGYPS EEE+EI+ R
Sbjct: 164 SIGGRTFPMPSPFLVMATQNPIEHEGVYPLPEAQRDRFLFKINVGYPSPEEEREIIYR-- 221
Query: 188 ERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATRED--------KREI 239
+ + +LS D+LR+Q +V A+++Y+ +V+ATR+ K +
Sbjct: 222 -MGVTPPQAKQILSTGDLLRLQEIAANNFVHHALVDYVVRVVFATRKPEQLGMNDVKSWV 280
Query: 240 EVGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQED 299
G SPR SL ++ +R+ A + GRDYVIP DV V L HR++L + I E
Sbjct: 281 AFGASPRASLGIIAAARSLALVRGRDYVIPQDVIEVIPDVLRHRLVLTYDALADEISPEI 340
Query: 300 IIKKILEKVPVPK 312
+I ++L+ V +P+
Sbjct: 341 VINRVLQTVALPQ 353
>pir||C83106 conserved hypothetical protein PA4322 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950546|gb|AAG07710.1|AE004848_9 (AE004848)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 335
Score = 284 bits (720), Expect = 7e-76
Identities = 138/311 (44%), Positives = 217/311 (69%), Gaps = 7/311 (2%)
Query: 7 AQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRV 66
AQ + E++KA++G+ V+ +L ++LA GH+L+E +PGL KTL+ ++ A+ F R+
Sbjct: 26 AQALRTELQKALIGQGAVIDDVLTALLAGGHVLVEGVPGLGKTLLVRALARCFDGGFARI 85
Query: 67 QFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQ 126
QFTPDL+PSD+ G V++ + +F+ +KGPVFT++LLADEINRAP KTQ+ALLE MQERQ
Sbjct: 86 QFTPDLMPSDVTGHAVYDLASEQFKLRKGPVFTHLLLADEINRAPAKTQAALLEVMQERQ 145
Query: 127 VTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRR 186
VT+EG +P+PF+V+ATQNPIEQEGTYPLPEA+LDRF+++LR+ YP+ E E++ L R+
Sbjct: 146 VTLEGRALPVPQPFMVLATQNPIEQEGTYPLPEAELDRFMLKLRIDYPA-EAEEQTLVRQ 204
Query: 187 IERK-----MDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEV 241
+ R +D + +L +D+L +QR ++ + D +++Y L TR + + +
Sbjct: 205 VTRSARSDMLDVANLRPLLKDKDVLALQRIASDLPIDDQVLDYAVRLARTTR-NWPGLAL 263
Query: 242 GVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDII 301
G PR S+AL++ RA A + G ++V+PDD+K A+ L HR+ L EL + + ++
Sbjct: 264 GAGPRASIALVRCGRARALLRGGEFVVPDDIKGCALAVLRHRVRLSPELDIEGLSVDQVL 323
Query: 302 KKILEKVPVPK 312
+++L++VP P+
Sbjct: 324 QQLLDQVPAPR 334
>pir||S75782 methanol dehydrogenase regulatory protein - Synechocystis sp.
(strain PCC 6803) >gi|1001272|dbj|BAA10517.1| (D64003)
MoxR [Synechocystis sp.]
Length = 303
Score = 283 bits (717), Expect = 2e-75
Identities = 142/300 (47%), Positives = 217/300 (72%), Gaps = 7/300 (2%)
Query: 12 EEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFTPD 71
+ + + IVGKD ++L+L ++L+ GH L+ED+PG+ KTL+AKS A+++ +F+RVQ TPD
Sbjct: 10 QNLSQTIVGKDEAIRLVLVALLSGGHALLEDVPGVGKTLLAKSLARSINGKFQRVQCTPD 69
Query: 72 LLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVTIEG 131
LLP+DI G N++N + EFEF GP F NILLADEINRA P+TQ+ALLE M+E+QVT++G
Sbjct: 70 LLPTDITGTNIWNPSSREFEFLPGPAFANILLADEINRATPRTQAALLEVMEEKQVTVDG 129
Query: 132 NTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRIERKM 191
T +P PF VIATQNPIE +GT+PLPEAQLDRF + L +GYPS+ EE ++L+R+ +
Sbjct: 130 ETRLVPHPFFVIATQNPIEYQGTFPLPEAQLDRFALSLSLGYPSEAEELKMLQRQQNPEA 189
Query: 192 DDV-EINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRGSLA 250
V ++ + +S E++ +Q+ + +V +++ + +Y+ LV A+R D+ ++ +GVSPRG+ A
Sbjct: 190 IAVGDLESCISLEEVEALQKAVRQVKLTEDLQQYLLRLVRASRTDE-DVTLGVSPRGTTA 248
Query: 251 LLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEKVPV 310
L + ++A+A +E RDY I DDVK VA L+HR+I + I++++L+ VP+
Sbjct: 249 LQRATQAFAFLEERDYAIDDDVKFVAPHVLAHRLIPASGK-----DPKAILQRLLDSVPI 303
>pir||S74593 MorR protein - Synechocystis sp. (strain PCC 6803)
>gi|1651818|dbj|BAA16745.1| (D90900) MorR protein
[Synechocystis sp.]
Length = 314
Score = 283 bits (716), Expect = 2e-75
Identities = 144/299 (48%), Positives = 213/299 (71%), Gaps = 5/299 (1%)
Query: 18 IVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFTPDLLPSDI 77
+VG+ ++++ +L ++LA GH++IE +PG KTL+ K A+++ +FRRVQ TPD+LPSD+
Sbjct: 17 LVGQPHLIQELLVALLAGGHVIIEGVPGTGKTLLVKLLAQSIQSQFRRVQLTPDMLPSDM 76
Query: 78 LGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVTIEGNTYQLP 137
+GVNVF+ F K+GPVFT ILLADEINR PPKTQSALLEAM+E+QVT++G+TY LP
Sbjct: 77 VGVNVFDFNQQAFSLKQGPVFTEILLADEINRTPPKTQSALLEAMEEQQVTLDGHTYALP 136
Query: 138 RPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEIL---KRRIERKMDDV 194
F V+ATQNP+E EGTYPLPEAQLDRFL +L V YP K++L ++ + D+
Sbjct: 137 PLFWVVATQNPLEFEGTYPLPEAQLDRFLFKLVVDYPPPAAAKQMLVNFQQGFHAQRQDL 196
Query: 195 E-INTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRGSLALLK 253
E + + + E+IL +R +E++ V + +++Y+ +LV TR +I +G SPR SL L+
Sbjct: 197 EQLTAIATVEEILASRRSVEDIAVDEKLLDYLLALVEKTRYHP-DILIGASPRASLRWLQ 255
Query: 254 LSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEKVPVPK 312
++A A + G++Y++PD++K VA P L HR+IL+ E I +++I ILE+ PVP+
Sbjct: 256 AAKADAWLNGQEYLLPDNLKTVAPPLLRHRLILRPEAQLDGIGIDEVITAILEQTPVPR 314
>pir||H70121 methanol dehydrogenase regulator (moxR) homolog - Lyme disease
spirochete >gi|2688061|gb|AAC66559.1| (AE001128)
methanol dehydrogenase regulator (moxR) [Borrelia
burgdorferi]
Length = 337
Score = 282 bits (715), Expect = 3e-75
Identities = 149/311 (47%), Positives = 212/311 (67%), Gaps = 8/311 (2%)
Query: 9 KVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQF 68
K EV ++G+ ++ +L +L DGH+L+E +PGLAKTL ++ + L LEF+R+QF
Sbjct: 27 KFRREVATRVLGQKEMIDAILMGLLTDGHVLLEGVPGLAKTLAIQTVSDVLDLEFKRIQF 86
Query: 69 TPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVT 128
TPDLLPSD+ G V+ T F+ +KGPVF+N++LADEINRAP K QSALLEAM ERQVT
Sbjct: 87 TPDLLPSDLTGNMVYKSATGTFKVRKGPVFSNVILADEINRAPAKVQSALLEAMGERQVT 146
Query: 129 IEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILK-RRI 187
+ T++LP PF V+ATQNPIEQEGTY LPE+QLDRFL+++ V YPS ++E +LK +
Sbjct: 147 LGDETHRLPDPFFVLATQNPIEQEGTYNLPESQLDRFLLKVNVHYPSVQDEVRLLKIFSV 206
Query: 188 ERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATRE-DKRE------IE 240
+ +++++++ V++ + ++R + V V D I+ YI +L+ A+RE DK+ IE
Sbjct: 207 DGRLENIKVAKVMNAYSLADIKRTVGRVKVDDKIMLYIVTLISASRERDKKTYPFAKYIE 266
Query: 241 VGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDI 300
G SPR SL+LLK +R A EGR +V+P+DVKAVA L HRI E + +DI
Sbjct: 267 FGASPRASLSLLKCARVNALYEGRIFVLPEDVKAVAYSVLRHRITPSYEAEVEEMSIDDI 326
Query: 301 IKKILEKVPVP 311
I+ +L V +P
Sbjct: 327 IRMLLSAVALP 337
>pir||G82635 methanol dehydrogenase regulatory protein XF1813 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9106890|gb|AAF84619.1|AE004002_9 (AE004002) methanol
dehydrogenase regulatory protein [Xylella fastidiosa]
Length = 317
Score = 281 bits (711), Expect = 8e-75
Identities = 134/287 (46%), Positives = 210/287 (72%), Gaps = 2/287 (0%)
Query: 3 VQVKAQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLE 62
+++ + +V ++GK+ ++L ++L+ GH+L+EDLPGL KT +A + A +LGL
Sbjct: 14 LRLSLDEAQNQVNTLLLGKEQEVRLAFVALLSGGHLLLEDLPGLGKTTLAHALASSLGLT 73
Query: 63 FRRVQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAM 122
FRRVQFT DLLP+D+LG++V+N +T +FEF GPVFT++LLADEINRAPP+TQSALLEAM
Sbjct: 74 FRRVQFTSDLLPADVLGISVYNTQTQQFEFHPGPVFTHVLLADEINRAPPRTQSALLEAM 133
Query: 123 QERQVTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEI 182
E+QVT++G T L PF VIATQNP++ GT+PLP++QLDRFL+RL +GYP+ E E+ +
Sbjct: 134 AEQQVTLDGITRSLSDPFFVIATQNPVDLYGTFPLPDSQLDRFLLRLSLGYPNAEAERTL 193
Query: 183 LKRRIERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVG 242
L R++ + L+ D++ +++ + V+VSDA+IEY+ +L+ +R+ + + VG
Sbjct: 194 LSGMDRRELLTHTLPR-LTEADVILLRKTVLGVHVSDALIEYVQALLLRSRQ-QSGVRVG 251
Query: 243 VSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRE 289
+SPR +ALL+ ++AYA + GR++V+P+D++ + V HR++ + E
Sbjct: 252 LSPRAGIALLRAAKAYALLSGREHVLPEDIQELFVSVAGHRLVPEAE 298
>pir||G83261 conserved hypothetical protein PA3070 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949177|gb|AAG06458.1|AE004731_6 (AE004731)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 326
Score = 277 bits (700), Expect = 2e-73
Identities = 143/301 (47%), Positives = 206/301 (67%), Gaps = 8/301 (2%)
Query: 18 IVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFTPDLLPSDI 77
I+G++ ++ +L ++LADGH+L+E PGLAKT K A+ L EF R+QFTPDLLP+DI
Sbjct: 25 ILGQEKLVDRLLIALLADGHLLVEGAPGLAKTKAIKDLAEGLEAEFHRIQFTPDLLPADI 84
Query: 78 LGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVTIEGNTYQLP 137
G ++ +T F F++GP+F +++LADEINRAP K QSALLEAM ERQV++ +TY LP
Sbjct: 85 TGTEIYRPETGTFVFQQGPIFHHLVLADEINRAPAKVQSALLEAMAERQVSVGRSTYDLP 144
Query: 138 RPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKR-RIERKMDDVEI 196
+ F+V+ATQNPIEQEGTYPLPEAQLDRFL+ +++GYP E+ IL++ R E +
Sbjct: 145 QLFLVMATQNPIEQEGTYPLPEAQLDRFLMHVKIGYPEASVERRILQQARGEALNGEARP 204
Query: 197 NTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKRE-------IEVGVSPRGSL 249
++ E I ++EI +Y++DA+ EY+ L+ ATR + I G SPRGS+
Sbjct: 205 ERRVTQETIFAARQEILGLYMADAVEEYLVQLIMATRTPAKHDAELAEWISYGASPRGSI 264
Query: 250 ALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEKVP 309
AL + +RA+A + GRD+V P+D++AV L HR+IL E I Q+ ++++IL+ V
Sbjct: 265 ALDRCARAHAWLGGRDFVSPEDIQAVLFDVLRHRLILTFEAEAAGIDQDRVVQRILDVVA 324
Query: 310 V 310
V
Sbjct: 325 V 325
>emb|CAB98184.1| (AJ276161) putative regulatory protein [Streptomyces sparsogenes]
Length = 335
Score = 275 bits (696), Expect = 4e-73
Identities = 140/301 (46%), Positives = 201/301 (66%), Gaps = 2/301 (0%)
Query: 12 EEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFTPD 71
+ +++ + GK + ++L L + ++GH+LIED+PG KT +A+ A +L ++ RVQFTPD
Sbjct: 32 DNIERVVKGKRDTVELALVCLFSEGHLLIEDVPGTGKTTLARCLAASLEADWHRVQFTPD 91
Query: 72 LLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVTIEG 131
LLPSDI GV V+ Q T FEF GPVF NI+L DEINRA PKTQSA+LE M+ERQVT +G
Sbjct: 92 LLPSDITGVTVYRQNTGTFEFLPGPVFANIVLGDEINRASPKTQSAMLEVMEERQVTADG 151
Query: 132 NTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRIERKM 191
+T+ +PRPF+VIATQN ++ GTYPLPEAQLDRFL+++ +GYP E +L +
Sbjct: 152 STHPVPRPFMVIATQNSVDMGGTYPLPEAQLDRFLMQVTLGYPDHASEVAVLSGAASQTS 211
Query: 192 DDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRGSLAL 251
+ ++ T+ + I + ++ V+ + +Y+ +V ATR E+ +G SPRGS+AL
Sbjct: 212 IE-QLPTIATGRHIAEFIQVARQIQVAPQLYDYLVRVVAATR-SLPEVRLGASPRGSVAL 269
Query: 252 LKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEKVPVP 311
L+ R AA +GR Y +P+DVKA+A P L+HR+IL E D+I + L VPVP
Sbjct: 270 LRAVRVRAASQGRTYALPEDVKALAGPVLAHRLILTPEAELSGRCGADVIAEALATVPVP 329
Query: 312 K 312
+
Sbjct: 330 Q 330
>pir||H83287 conserved hypothetical protein PA2875 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948964|gb|AAG06263.1|AE004713_12 (AE004713)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 305
Score = 274 bits (694), Expect = 8e-73
Identities = 140/274 (51%), Positives = 192/274 (69%), Gaps = 2/274 (0%)
Query: 11 LEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFTP 70
L+ V + ++GKD ++L LA +LA GH+LIEDLPG+ KT ++ + A+ LGL F+R+QFT
Sbjct: 9 LKAVDEILLGKDRQVRLALACLLARGHLLIEDLPGMGKTTLSHALARVLGLSFQRIQFTS 68
Query: 71 DLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVTIE 130
DLLP DILG +VF++ + +F F GP+F ++LADEINRA PK+QSALLEAM+E QVTIE
Sbjct: 69 DLLPGDILGTSVFDKDSGQFVFHPGPIFAELVLADEINRATPKSQSALLEAMEEGQVTIE 128
Query: 131 GNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRIERK 190
G T LP PF VIATQNP Q GT+ LPE+QLDRFL+RL +GYP + E+ +L R
Sbjct: 129 GATRPLPEPFFVIATQNPASQGGTFSLPESQLDRFLMRLSLGYPGRAAERSLLLGEARRD 188
Query: 191 MDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRGSLA 250
+ + +L + Q E+ ++ SDA+++Y+ LV ATR + +G+SPRGSLA
Sbjct: 189 LLP-RLEPLLDHAALAAFQAEVPKIRASDALVDYVLRLVEATR-TQPAFALGLSPRGSLA 246
Query: 251 LLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRI 284
LL +RA+A + GRDYVIP+DV+AV HR+
Sbjct: 247 LLAAARAWALLAGRDYVIPEDVQAVLPAVAGHRL 280
>emb|CAA65298.1| (X96434) moxR [Borrelia burgdorferi] >gi|2689172|emb|CAA06007.1|
(AJ003222) moxR [Borrelia burgdorferi]
Length = 329
Score = 273 bits (690), Expect = 2e-72
Identities = 147/311 (47%), Positives = 209/311 (66%), Gaps = 9/311 (2%)
Query: 9 KVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQF 68
K EV ++G+ ++ +L +L DGH+L+E +PGLAKTL ++ + L LEF+R+QF
Sbjct: 20 KFRREVATRVLGQKEMIDAILMGLLTDGHVLLEGVPGLAKTLAIQTVSDVLDLEFKRIQF 79
Query: 69 TPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVT 128
TPDLLPSD+ G V+ T F+ +KGPVF+N++LADEINRAP K QSALLEAM ERQVT
Sbjct: 80 TPDLLPSDLTGNMVYKSATGTFKVRKGPVFSNVILADEINRAPAKVQSALLEAMGERQVT 139
Query: 129 IEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILK-RRI 187
+ T++LP PF V+ATQNPIEQEGTY LPE+QLDRFL+++ V YPS ++E +LK +
Sbjct: 140 LGDETHRLPDPFFVLATQNPIEQEGTYNLPESQLDRFLLKVNVHYPSVQDEVRLLKIFSV 199
Query: 188 ERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATRE-DKRE------IE 240
+ +++++++ V++ + ++R + V V D I+ I + A+RE DK+ IE
Sbjct: 200 DGRLENIKVAKVMNAYSLADIKRTVGRVKVDDKIM-LICYFISASRERDKKTYPFAKYIE 258
Query: 241 VGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDI 300
G SPR SL+LLK +R A EGR +V+P+DVKAVA L HRI E + +DI
Sbjct: 259 FGASPRASLSLLKCARVNALYEGRIFVLPEDVKAVAYSVLRHRITPSYEAEVEEMSIDDI 318
Query: 301 IKKILEKVPVP 311
I+ +L V +P
Sbjct: 319 IRMLLSAVALP 329
>pir||B75496 moxR protein - Deinococcus radiodurans (strain R1)
>gi|6458321|gb|AAF10200.1|AE001920_3 (AE001920) moxR
protein [Deinococcus radiodurans]
Length = 320
Score = 271 bits (686), Expect = 7e-72
Identities = 144/303 (47%), Positives = 207/303 (67%), Gaps = 6/303 (1%)
Query: 9 KVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQF 68
+ LE++ + I+GK L+L +A +LA GH+LIED PG+ KT +A++ A+ LGL FRRVQF
Sbjct: 24 RALEQLDQVILGKPTQLRLAVACLLARGHLLIEDQPGVGKTTLAQALARTLGLGFRRVQF 83
Query: 69 TPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVT 128
T DLLP+D+LGV++++ + F ++ GP+F+ +LLADEINRA P+TQ ALLEAM+ERQV+
Sbjct: 84 TSDLLPADLLGVSIWDAASSTFRYQPGPIFSELLLADEINRATPRTQGALLEAMEERQVS 143
Query: 129 IEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRIE 188
G T LP PF VIATQNP GT PLPEAQLDRFL+ + +GYP E+ +L+
Sbjct: 144 EGGVTRPLPDPFFVIATQNPAAFVGTSPLPEAQLDRFLMTVTLGYPDARAERTLLETG-G 202
Query: 189 RKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRGS 248
R E+ VL +LR Q E++ V+ + A+++Y+ L ATRE + I G+SPR
Sbjct: 203 RGQSVRELPAVLDAPLLLRAQAEVDAVHAAPALLDYLQLLARATRE-QPAIASGLSPRAL 261
Query: 249 LALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEKV 308
LALL +RA+A + GRD V+P+DV+AV SHR++L+ R D+I+++L++
Sbjct: 262 LALLAAARAWAYLAGRDMVLPEDVQAVFPALASHRLVLRDP----AARPGDVIRRLLDET 317
Query: 309 PVP 311
P+P
Sbjct: 318 PIP 320
>pir||H82493 MoxR-related protein VCA0175 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9657565|gb|AAF96088.1| (AE004357)
MoxR-related protein [Vibrio cholerae]
Length = 318
Score = 263 bits (664), Expect = 3e-69
Identities = 137/309 (44%), Positives = 202/309 (65%), Gaps = 8/309 (2%)
Query: 8 QKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQ 67
Q + + + ++G+ + + +L ++LADGHIL+E PGLAKT KS A + +F R+Q
Sbjct: 7 QTLQHYLNQQVIGQTDFINQLLIALLADGHILVEGPPGLAKTRAVKSLADCIEGDFHRIQ 66
Query: 68 FTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQV 127
FTPDLLP+D+ G +V+ +T EF F+ GP+F ++LADEINRAP K Q+A+LEAM E+Q+
Sbjct: 67 FTPDLLPADLTGSDVYRPETGEFVFQSGPIFNALVLADEINRAPAKVQAAMLEAMAEKQI 126
Query: 128 TIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILK-RR 186
+ TY+LP F+V+ATQNPIEQEGTYPLPEAQLDRFL+ L V YP+ E+E IL+ R
Sbjct: 127 SAGRKTYRLPELFLVMATQNPIEQEGTYPLPEAQLDRFLLHLEVNYPNAEDELAILRLNR 186
Query: 187 IERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATRED-------KREI 239
E K +L+ + + ++E+ V++++AI Y+ LV ATR + +
Sbjct: 187 GEAKGQQAINKPLLTQQQVFSARQEVLNVHMAEAIENYLVRLVMATRHPANYDAKLAQWL 246
Query: 240 EVGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQED 299
+GVSPR ++AL + +RA+A ++GRD+V PDDV+ +A L HR++L + I
Sbjct: 247 TMGVSPRATIALDRCARAHAWLQGRDFVTPDDVQVMAFSVLRHRLLLSYQAQAEGIHPNK 306
Query: 300 IIKKILEKV 308
II +L V
Sbjct: 307 IISHLLSLV 315
>gb|AAC46196.1| (AF002133) transcriptional regulator [Mycobacterium avium]
Length = 309
Score = 214 bits (540), Expect = 9e-55
Identities = 101/178 (56%), Positives = 135/178 (75%)
Query: 8 QKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQ 67
++ + EVK+ IVG+D +++ ML +L+ GH+L+E +PG+AK+L ++FAK +G F R+Q
Sbjct: 46 ERAIFEVKRIIVGQDQLVERMLVGLLSKGHVLLEGVPGVAKSLAVETFAKVVGGTFARIQ 105
Query: 68 FTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQV 127
FTP +P+DI+G ++ Q EF+ + GPV N LLADEINRAP K QSALLE MQER V
Sbjct: 106 FTPRPVPTDIIGTRIYRQGKEEFDTELGPVVVNFLLADEINRAPAKVQSALLEVMQERHV 165
Query: 128 TIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKR 185
+I G T+ LP PF+V+ATQNPIE EG YPLPEAQ DRFL ++ VGYPS EEE+EI+ R
Sbjct: 166 SIGGKTFPLPNPFLVMATQNPIEHEGVYPLPEAQRDRFLFKINVGYPSPEEEREIIYR 223
>pir||S43189 hypothetical protein - Pseudomonas aeruginosa
>gi|469101|emb|CAA46565.1| (X65613) ORF2 [Pseudomonas
aeruginosa]
Length = 263
Score = 209 bits (527), Expect = 3e-53
Identities = 101/173 (58%), Positives = 133/173 (76%)
Query: 11 LEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFTP 70
L+ V + ++GKD ++L LA +LA GH+LIEDLPG+ KT ++ + A+ LGL F+R+QFT
Sbjct: 9 LKAVDEILLGKDRQVRLALACLLARGHLLIEDLPGMGKTTLSHALARWLGLSFQRIQFTS 68
Query: 71 DLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVTIE 130
DLLP DILG +VF++ + +F F GP+F ++LADEINRA PK+QSALLEAM+E QVTIE
Sbjct: 69 DLLPGDILGTSVFDKDSGQFVFHPGPIFAELVLADEINRATPKSQSALLEAMEEGQVTIE 128
Query: 131 GNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEIL 183
G T LP PF VIATQNP Q GT+ LPE+QLDRFL+RL +GYP + E+ +L
Sbjct: 129 GATRPLPEPFFVIATQNPASQGGTFSLPESQLDRFLMRLSLGYPGRAAERSLL 181
>gb|AAB91544.1| (AF017119) MoxR homolog [Allochromatium vinosum]
Length = 191
Score = 196 bits (493), Expect = 3e-49
Identities = 93/160 (58%), Positives = 121/160 (75%)
Query: 12 EEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFTPD 71
++V +AI+G+ +++ +L ++LADGH+L+E PGLAKT K A L +F R+QFTPD
Sbjct: 32 DQVGRAILGQHGLIERLLIALLADGHLLVEGAPGLAKTTAVKHLAAGLEGDFHRIQFTPD 91
Query: 72 LLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVTIEG 131
LLP+D+ G ++ F F +GP+F N+LLADE+NRAP K QSALLEAM ERQVT+
Sbjct: 92 LLPADLTGTEIYRPHDGSFRFDRGPIFHNLLLADEVNRAPAKVQSALLEAMGERQVTVGR 151
Query: 132 NTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRV 171
TY LP F+V+ATQNPIEQEGTYPLPEAQLDRFL+ +RV
Sbjct: 152 ETYPLPELFLVMATQNPIEQEGTYPLPEAQLDRFLLHVRV 191
>gb|AAB62561.1| (AF006054) MoxR [Mycobacterium tuberculosis]
Length = 211
Score = 193 bits (486), Expect = 2e-48
Identities = 90/161 (55%), Positives = 122/161 (74%)
Query: 15 KKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFTPDLLP 74
++ IVG+D +++ ML +L+ GH+L+E +PG+AK+L ++FA+ +G F R+QFTPDL+P
Sbjct: 50 QRIIVGQDQLVERMLVGLLSKGHVLLEGVPGVAKSLAVETFARVVGGTFSRIQFTPDLVP 109
Query: 75 SDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVTIEGNTY 134
+DI+G ++ Q EF+ + GPV N LLA EINRAP K QSALLE MQER V+I G T+
Sbjct: 110 TDIIGTRIYRQGREEFDTELGPVVANFLLAVEINRAPAKVQSALLEVMQERHVSIGGRTF 169
Query: 135 QLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPS 175
+P PF+V+ATQNPIE EG YPLPEAQ DRFL ++ VG PS
Sbjct: 170 PMPSPFLVMATQNPIEHEGVYPLPEAQRDRFLFKINVGIPS 210
>dbj|BAA23276.1| (AB004097) ORF4 [Hyphomicrobium methylovorum]
Length = 352
Score = 146 bits (365), Expect = 3e-34
Identities = 98/320 (30%), Positives = 169/320 (52%), Gaps = 31/320 (9%)
Query: 13 EVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFTPDL 72
EV +AIVG++ ++L++ ++ A GH+L+E G+ KT + ++ A ALG + RV+ T DL
Sbjct: 33 EVGRAIVGQERAIRLLVIAVFARGHVLLEGDVGVGKTTLLRAVAHALGGSYERVEGTIDL 92
Query: 73 LPSDILGVNVFNQKTLEFEFKKGPVF-----TNILLADEINRAPPKTQSALLEAMQERQV 127
+PSD++ N+ + + GPV ++ +EINRA P+ S LL M ER +
Sbjct: 93 MPSDMIYYTFLNEDG-KPRVEPGPVLRHGSDLSVFFFNEINRARPQVHSLLLRLMAERSI 151
Query: 128 TIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRI 187
T + P +V A +N IE+E T+ LP A DRFL+ + +G P+ +E + L
Sbjct: 152 TAFNTEHFFPH-VLVFADRNRIEREETFELPAAARDRFLMEVSIGSPTDDESRRAL--LF 208
Query: 188 ERKMDDVE------INTVLSPEDILRMQREIE-EVYVSDAIIEYITSLVWATRED----- 235
E + DV+ V+ I + + I+ V VS AI +Y L A R+
Sbjct: 209 ETRFHDVDQLIGALKEGVIDYRQINALAKIIQSSVVVSPAIEKYTLDLWKAVRDPAAANV 268
Query: 236 -------KREIEVGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKR 288
R + G SPRG L++ +R A + GR+ V+P+D++ + ++HRI L
Sbjct: 269 SIPGVDMTRLVAGGASPRGMSYLIRAARVSAWLAGREMVVPEDIRDIFYECMAHRIFLSP 328
Query: 289 ELWYMRIRQEDIIKKILEKV 308
+R+E++++ +++++
Sbjct: 329 ---VYELRREELVRSLIDQI 345
>sp|P30621|MOXR_METEX MOXR PROTEIN (MXAR PROTEIN) >gi|1771259|emb|CAA69191.1| (Y07864)
mxaR [Methylobacterium extorquens]
Length = 341
Score = 143 bits (356), Expect = 3e-33
Identities = 95/328 (28%), Positives = 171/328 (51%), Gaps = 27/328 (8%)
Query: 7 AQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRV 66
A + E+ KA+VG+D ++L+ ++ A GH+++E G+ KT + ++ A+ LG + RV
Sbjct: 18 AARFEREIAKAVVGQDRAIRLLTIAIFARGHVMLEGDVGVGKTTLLRAVARGLGGAYERV 77
Query: 67 QFTPDLLPSDILGVNVFNQKTLEFEFKKGPVF-----TNILLADEINRAPPKTQSALLEA 121
+ T D++P+D++ + + + + GPV ++ +EINRA P+ + LL
Sbjct: 78 EGTVDMMPTDLI-YHTYLGEDGRPRVEPGPVLRRAEDLSVFFFNEINRARPQVHALLLRI 136
Query: 122 MQERQVTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKE 181
M ER V+ Y+ P V A +N +E+E T+ LP A DRFL+ + + P ++
Sbjct: 137 MAERSVSAFNREYRFPN-LQVFADRNRVEREETFELPAAARDRFLMEIGMEAPRDAARRD 195
Query: 182 IL----KRRIERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVW------- 230
++ +R ++VE VL E I + I+ ++ IE +W
Sbjct: 196 LVFDPRFHDTDRLTEEVEAG-VLDFERIGTIASAIQHAISAEPAIEAYVVGLWEALVRPA 254
Query: 231 -----ATREDKREIEVGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRII 285
A R ++ G SPRG L++ +R A +EGRD+++P+D++AV ++HR+
Sbjct: 255 PPHPLARHRMDRLVQGGASPRGVAFLVRAARVRAWLEGRDWLVPEDIRAVFPEVMAHRVF 314
Query: 286 LKRELWYMRIRQ--EDIIKKILEKVPVP 311
L+ ++ MR + D+I+ + E VP P
Sbjct: 315 LE-PVYEMRRAEIVPDLIRAVFETVPAP 341
>sp|P29901|MOXR_PARDE MOXR PROTEIN >gi|94691|pir||D41377 methanol dehydrogenase
regulatory protein moxR [validated] - Paracoccus
denitrificans
Length = 339
Score = 127 bits (317), Expect = 1e-28
Identities = 98/322 (30%), Positives = 160/322 (49%), Gaps = 35/322 (10%)
Query: 18 IVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFTPDLLPSDI 77
++G+ ++L+L S L GH+L+ G KT + ++ A+ALG + RV+ T DLLP+D+
Sbjct: 23 VLGQARTIRLLLISALCRGHVLLAGDVGTGKTTLLRAMARALGGPYGRVEGTVDLLPTDL 82
Query: 78 LGVNVFNQKTLEFEFKKGPVFTN-----ILLADEINRAPPKTQSALLEAMQERQVTIEGN 132
+ + + + GPV + +EINRA P+ + LL M ER ++
Sbjct: 83 I-YSTHIAEDGRPRIEPGPVLEQGEDMAVFFFNEINRARPQVHALLLRLMAERSLSAFRR 141
Query: 133 TYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRIERKMD 192
Y+ P V A +N IE++ T+ LP A DRFL+ + V P+ E++ L E +
Sbjct: 142 EYRFPH-LQVFADRNQIERDETFELPAAARDRFLMEIAVDAPAAPEDRVALA--FEPRFH 198
Query: 193 DV-----EINTVLSPEDILR-MQREIEE-VYVSDAIIEYITSLVWATR------------ 233
D E+ + P L + ++ + S A+ Y+ L A R
Sbjct: 199 DTTALIAEVGQGILPYRGLNGLAAGVQSGTHASPALRRYVFDLCEALRNPASAGLALEGA 258
Query: 234 EDKREIEVGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYM 293
+ R I GVSPRG L++ +RA A +EGR+ V+P DV+AV P ++HRI L
Sbjct: 259 DAARLIRGGVSPRGMQHLVRAARACAWLEGREAVLPQDVRAVLAPVMAHRIFLSPA---Y 315
Query: 294 RIRQEDIIKKILE----KVPVP 311
R+E ++ +++ +PVP
Sbjct: 316 EPRREALVPALIDAAFATIPVP 337
>pir||E69109 conserved hypothetical protein MTH1814 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622947|gb|AAB86280.1| (AE000935) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 298
Score = 74.1 bits (179), Expect = 2e-12
Identities = 64/226 (28%), Positives = 105/226 (46%), Gaps = 33/226 (14%)
Query: 1 MNVQVKAQKVLEEVKKA--IVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKA 58
MN K K+ ++ I +D ++ L L+S L +L+E PG KTL+AK A+A
Sbjct: 1 MNTTEKLDKIDTSLRNVGYIPSRDIIITLFLSSELKKP-VLVEGPPGTGKTLLAKKTAEA 59
Query: 59 LGLEFRRVQFTPDLLPSDILGVNVFNQKTLEFE----------------FKKGPVFT--- 99
LG EF R+Q + I+G + ++ L E F K P+ +
Sbjct: 60 LGREFFRIQCYEGITFEQIVGEWNYQKQLLSLEKSRIHGSDEDVFREDYFIKRPLLSAFI 119
Query: 100 ----NILLADEINRAPPKTQSALLEAMQERQVTIEG-NTYQLPRPFIVIATQNPIEQEGT 154
++LL DEI++A + +S LL+A+ E+Q+T+ T+ L +V T N
Sbjct: 120 NEKPSLLLIDEIDKADEEVESFLLQALGEKQITVNDLGTFDLRNDIMVFLTSNSQRN--- 176
Query: 155 YPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRIERKMDDVEINTVL 200
L + DR L + + YP E E EI++ + + + TV+
Sbjct: 177 --LLDETRDRCLY-IHIDYPDPEREMEIVRAHVPSAPEGLIRETVM 219
>pir||C65178 hypothetical 57.4 kD protein in asnA-kup intergenic region -
Escherichia coli (strain K-12)
>gi|2367275|gb|AAC76769.1| (AE000451) putative
2-component regulator [Escherichia coli K12]
Length = 506
Score = 69.1 bits (166), Expect = 6e-11
Identities = 73/299 (24%), Positives = 132/299 (43%), Gaps = 34/299 (11%)
Query: 6 KAQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAK----SFAKALGL 61
+ ++ ++K + + + ++L L + L+ + + PG+AK+L+A+ +F A
Sbjct: 18 RISRLSSSLEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAF 77
Query: 62 EFRRVQFTPDLLPSDILG---VNVFNQKTLEFEFKKGPV-FTNILLADEINRAPPKTQSA 117
E+ +F+ P ++ G + + G + I+ DEI +A P +
Sbjct: 78 EYLMTRFST---PEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNT 134
Query: 118 LLEAMQERQVTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKE 177
LL A+ ERQ + ++P +V A+ E + + EA DR L+RL + K
Sbjct: 135 LLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSL---EALYDRMLIRL---WLDKV 188
Query: 178 EEKEILKRRIERKMDD----VEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATR 233
++K + + + D+ V ++ E+ R Q+EI E+ + D + E I L +
Sbjct: 189 QDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFML--RQQ 246
Query: 234 EDKREIEVGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWY 292
DK VS R ++L +A A GR V P D+ I+LK LWY
Sbjct: 247 LDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDL-----------ILLKDCLWY 294
>sp|P31473|YIEN_ECOLI HYPOTHETICAL 56.4 KD PROTEIN IN ASNA-KUP INTERGENIC REGION
Length = 498
Score = 69.1 bits (166), Expect = 6e-11
Identities = 73/299 (24%), Positives = 132/299 (43%), Gaps = 34/299 (11%)
Query: 6 KAQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAK----SFAKALGL 61
+ ++ ++K + + + ++L L + L+ + + PG+AK+L+A+ +F A
Sbjct: 10 RISRLSSSLEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAF 69
Query: 62 EFRRVQFTPDLLPSDILG---VNVFNQKTLEFEFKKGPV-FTNILLADEINRAPPKTQSA 117
E+ +F+ P ++ G + + G + I+ DEI +A P +
Sbjct: 70 EYLMTRFST---PEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNT 126
Query: 118 LLEAMQERQVTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKE 177
LL A+ ERQ + ++P +V A+ E + + EA DR L+RL + K
Sbjct: 127 LLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSL---EALYDRMLIRL---WLDKV 180
Query: 178 EEKEILKRRIERKMDD----VEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATR 233
++K + + + D+ V ++ E+ R Q+EI E+ + D + E I L +
Sbjct: 181 QDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFML--RQQ 238
Query: 234 EDKREIEVGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWY 292
DK VS R ++L +A A GR V P D+ I+LK LWY
Sbjct: 239 LDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDL-----------ILLKDCLWY 286
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.378
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108466597
Number of Sequences: 2977
Number of extensions: 4529929
Number of successful extensions: 13920
Number of sequences better than 1.0e-10: 44
Number of HSP's better than 0.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 13810
Number of HSP's gapped (non-prelim): 45
length of query: 314
length of database: 189,106,746
effective HSP length: 59
effective length of query: 255
effective length of database: 153,796,013
effective search space: 39217983315
effective search space used: 39217983315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)