BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0849 (PAB0849) DE:Hypothetical protein
(410 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75037 hypothetical protein PAB0849 - Pyrococcus abyssi (st... 816 0.0
pir||H71125 hypothetical protein PH0774 - Pyrococcus horikoshii ... 631 e-180
gb|AAG18828.1| (AE004987) Vng0222c [Halobacterium sp. NRC-1] 134 2e-30
pir||A70947 hypothetical protein Rv3163c - Mycobacterium tubercu... 90 4e-17
pir||A75012 conserved hypothetical protein PAB1277 - Pyrococcus ... 88 2e-16
pir||H71139 hypothetical protein PH0331 - Pyrococcus horikoshii ... 85 1e-15
dbj|BAB04451.1| (AP001509) unknown conserved protein in others [... 78 2e-13
pir||A71147 hypothetical protein PH0387 - Pyrococcus horikoshii ... 77 3e-13
dbj|BAB04324.1| (AP001509) unknown conserved protein [Bacillus h... 76 5e-13
pir||H72606 hypothetical protein APE1319 - Aeropyrum pernix (str... 75 1e-12
pir||S75346 hypothetical protein slr2013 - Synechocystis sp. (st... 72 1e-11
sp|P94475|YEAD_BACSU HYPOTHETICAL 30.5 KD PROTEIN IN GABP-GUAA I... 72 1e-11
pir||T35916 conserved hypothetical protein SC9B2.20c - Streptomy... 70 5e-11
>pir||D75037 hypothetical protein PAB0849 - Pyrococcus abyssi (strain Orsay)
>gi|5458706|emb|CAB50193.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 410
Score = 816 bits (2086), Expect = 0.0
Identities = 410/410 (100%), Positives = 410/410 (100%)
Query: 1 MKPTGKAYALMTIIWIITILSYFLIRWEGVALTIPFLMVFLLSTIFFKSSVGVEVKREIE 60
MKPTGKAYALMTIIWIITILSYFLIRWEGVALTIPFLMVFLLSTIFFKSSVGVEVKREIE
Sbjct: 1 MKPTGKAYALMTIIWIITILSYFLIRWEGVALTIPFLMVFLLSTIFFKSSVGVEVKREIE 60
Query: 61 RSRAIEGSIVEITLKIKPRANARAVLVQDLTPEGLEILGRNSWVLSLKEGEEVKLKYKVK 120
RSRAIEGSIVEITLKIKPRANARAVLVQDLTPEGLEILGRNSWVLSLKEGEEVKLKYKVK
Sbjct: 61 RSRAIEGSIVEITLKIKPRANARAVLVQDLTPEGLEILGRNSWVLSLKEGEEVKLKYKVK 120
Query: 121 VVRGHHEFLGVRISYRDPFGIFEEDRVVEIYDELIGIPRIEDVITPYSTKGTKITTGPLP 180
VVRGHHEFLGVRISYRDPFGIFEEDRVVEIYDELIGIPRIEDVITPYSTKGTKITTGPLP
Sbjct: 121 VVRGHHEFLGVRISYRDPFGIFEEDRVVEIYDELIGIPRIEDVITPYSTKGTKITTGPLP 180
Query: 181 SPRLGEGLEFHAVREYMPGDPMKIINWKATAKTGKIMVNEFESERKVDVVVVVDATYKGV 240
SPRLGEGLEFHAVREYMPGDPMKIINWKATAKTGKIMVNEFESERKVDVVVVVDATYKGV
Sbjct: 181 SPRLGEGLEFHAVREYMPGDPMKIINWKATAKTGKIMVNEFESERKVDVVVVVDATYKGV 240
Query: 241 DVFDHLMRAAASLLLDALENGTSFGLLISEAVPIWTKVDYGKRHFFKCIDVLSISRPDKN 300
DVFDHLMRAAASLLLDALENGTSFGLLISEAVPIWTKVDYGKRHFFKCIDVLSISRPDKN
Sbjct: 241 DVFDHLMRAAASLLLDALENGTSFGLLISEAVPIWTKVDYGKRHFFKCIDVLSISRPDKN 300
Query: 301 NMIAYQVEHMARTKLPPRAQIIFISPLLTRESEEAIFTLYRLGYKIVTISPDPYSAREPR 360
NMIAYQVEHMARTKLPPRAQIIFISPLLTRESEEAIFTLYRLGYKIVTISPDPYSAREPR
Sbjct: 301 NMIAYQVEHMARTKLPPRAQIIFISPLLTRESEEAIFTLYRLGYKIVTISPDPYSAREPR 360
Query: 361 SREEELALRLLGLKRKARIRKVSEWTIVIDWNVKHPLKAAILSTFRGNVT 410
SREEELALRLLGLKRKARIRKVSEWTIVIDWNVKHPLKAAILSTFRGNVT
Sbjct: 361 SREEELALRLLGLKRKARIRKVSEWTIVIDWNVKHPLKAAILSTFRGNVT 410
>pir||H71125 hypothetical protein PH0774 - Pyrococcus horikoshii
>gi|3257183|dbj|BAA29866.1| (AP000003) 410aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 410
Score = 631 bits (1609), Expect = e-180
Identities = 296/409 (72%), Positives = 354/409 (86%)
Query: 1 MKPTGKAYALMTIIWIITILSYFLIRWEGVALTIPFLMVFLLSTIFFKSSVGVEVKREIE 60
MK TGKAY+L+TIIWII I SY L+RWEG+ LT+P L VFL S +FFK ++ V+V REI
Sbjct: 1 MKATGKAYSLLTIIWIIVISSYLLLRWEGIVLTLPVLFVFLFSALFFKPAIEVKVSREIR 60
Query: 61 RSRAIEGSIVEITLKIKPRANARAVLVQDLTPEGLEILGRNSWVLSLKEGEEVKLKYKVK 120
R R IEG EIT+++ AN +++ +QDLTP L+++ RN W+ SL+ EE +YKV+
Sbjct: 61 RHRLIEGEETEITIRVVSGANIKSLYIQDLTPPSLKVIDRNYWITSLRRSEERVFRYKVR 120
Query: 121 VVRGHHEFLGVRISYRDPFGIFEEDRVVEIYDELIGIPRIEDVITPYSTKGTKITTGPLP 180
V RG HEF GVRISYRDPFG+FEED +VE+YDE+IG+PRIE+V+TPYSTKGTKITTG LP
Sbjct: 121 VSRGKHEFPGVRISYRDPFGLFEEDYIVEVYDEIIGVPRIEEVVTPYSTKGTKITTGHLP 180
Query: 181 SPRLGEGLEFHAVREYMPGDPMKIINWKATAKTGKIMVNEFESERKVDVVVVVDATYKGV 240
SPRLGEGLEFHAVREY PGDPMK+INWKATAKTGKIM NEFESERKVDVV++VDATYKG
Sbjct: 181 SPRLGEGLEFHAVREYRPGDPMKVINWKATAKTGKIMANEFESERKVDVVLIVDATYKGK 240
Query: 241 DVFDHLMRAAASLLLDALENGTSFGLLISEAVPIWTKVDYGKRHFFKCIDVLSISRPDKN 300
+VFD+L+R AASLL+DALENGTSFGLLISEAVP+W KVDYGKRHFFKCIDVLS+S+PDKN
Sbjct: 241 EVFDYLIRVAASLLMDALENGTSFGLLISEAVPVWIKVDYGKRHFFKCIDVLSMSKPDKN 300
Query: 301 NMIAYQVEHMARTKLPPRAQIIFISPLLTRESEEAIFTLYRLGYKIVTISPDPYSAREPR 360
N+IAYQVEH+ART+LPPRAQIIFISPLLT+ESE+AIF LY+LGYKIV +SP+PYS REP+
Sbjct: 301 NLIAYQVEHLARTRLPPRAQIIFISPLLTQESEKAIFELYKLGYKIVVLSPNPYSLREPK 360
Query: 361 SREEELALRLLGLKRKARIRKVSEWTIVIDWNVKHPLKAAILSTFRGNV 409
S+EEE+A+R+L LKR ARI+KV EW IVIDWNV+ PLKA IL++ R +
Sbjct: 361 SKEEEIAIRILSLKRMARIKKVREWGIVIDWNVREPLKATILNSIRRRI 409
>gb|AAG18828.1| (AE004987) Vng0222c [Halobacterium sp. NRC-1]
Length = 420
Score = 134 bits (333), Expect = 2e-30
Identities = 103/381 (27%), Positives = 161/381 (42%), Gaps = 24/381 (6%)
Query: 43 STIFFKSSVGVEVKREIERSRAIEGSIVEITLKIKPRANARAVL-VQDLTPEGLEIL-GR 100
+T+F + + V+R + G V++TL + + L + D P+ L + G
Sbjct: 45 ATLFAPPAPSLSVERSVSEDAPAAGDEVDVTLTVTNDGSFLPDLRLIDGVPDTLAVADGT 104
Query: 101 NSWVLSLKEGEEVKLKYKVKVVRGHHEFLGVRISYRDPFGIFEEDRVVEIYDELIGIPRI 160
+L+ G+ + Y V+ RG HEF V + RD G E V L +P
Sbjct: 105 PRLATALRAGKSATVTYTVEATRGDHEFDPVAVIARDISGSHETRTTVPAATTLTCVPDF 164
Query: 161 EDVITPYSTKGTKITTGPLPSPRLGEGLEFHAVREYMPGDPMKIINWKATAKTGKIMVNE 220
+ + GP P+P G G+ FHA REY GDP+ ++W A+ G++ +
Sbjct: 165 PRLAAFPLRRQPTQRAGPTPTPTGGSGVAFHATREYRSGDPLSRVDWTRLARDGELATVQ 224
Query: 221 FESERKVDVVVVVD-------ATYKGVDVFDHLMRAAASLLLDALENGTSFGLLISEAVP 273
F +ER V VVD + G + ++ + AA + L+ G G+
Sbjct: 225 FRAERAATAVAVVDTRRVAHVSDADGTNAVEYGVEAAGGVASALLDAGNQVGVASLGPHW 284
Query: 274 IWTKVDYGKRH------FFKCIDVLSISRPDKNNMIAYQVEHMARTKLPPRAQIIFISPL 327
W G+ H C S+S PD+ + A V RT LP AQ++F SPL
Sbjct: 285 AWLAPGLGREHRARLEALLACDRGFSVSPPDRRFLSAL-VFRRLRTHLPDDAQVVFCSPL 343
Query: 328 LTRESEEAIFTLYRLGYKIVTISPDPYSAREPRSREEELALRLLGLKRKARIRKVSEWTI 387
+ + E + L G+ + +SPD A E L R G+ R R+R + ++
Sbjct: 344 VDDTAAEYVRRLEASGHPVTVVSPDVTGA-------ETLGQRFAGVARAVRVRSLRAASV 396
Query: 388 -VIDWNVKHPLKAAILSTFRG 407
VIDW L A+ RG
Sbjct: 397 RVIDWQAGDSLAVAVADAERG 417
>pir||A70947 hypothetical protein Rv3163c - Mycobacterium tuberculosis (strain
H37RV) >gi|2827573|emb|CAA16628.1| (AL021646)
hypothetical protein Rv3163c [Mycobacterium
tuberculosis]
Length = 423
Score = 90.1 bits (220), Expect = 4e-17
Identities = 92/391 (23%), Positives = 170/391 (42%), Gaps = 38/391 (9%)
Query: 26 RWEGVALTIPFLMVFLLSTIFFKSSVGV-EVKREIERSRAIEGSIVEITLKIKPRANARA 84
RW+ +A P L V L +I ++ V V +V + + R E V +T+ + + A
Sbjct: 36 RWQLIAFAAPLLGV--LCSISWQRPVPVIQVHGDPDSQRCFENEHVRVTVWVTTESVDAA 93
Query: 85 V-----LVQDLTPEGLEILGRNSWVLSL--KEGEEVKLKYKVKVVRGHHEFLGVRISYRD 137
V + + E LE + R + +S + ++ +V VV +G
Sbjct: 94 VELTVSALAGMQFEALESVSRRTTTVSAVAQRWGRYPIRARVAVVARGGLLMGA------ 147
Query: 138 PFGIFEEDRVVEIYDELIGIPRIEDVITPYSTKGTKITTGPLPSPRLGEGLEFHAVREYM 197
G + E++ P TP G + +G G+E+ +R Y+
Sbjct: 148 --GTVDAA-------EIVVFPLTPPQSTPLPQTELLDRLGAHLTRHVGPGVEYADIRPYV 198
Query: 198 PGDPMKIINWKATAKTGKIMVNEFESERKVDVVVVVDATYK----GVDVFDHLMRAAASL 253
PGD ++ +NW +A+ G++ V ++R DVVV++D + + + ++R AA +
Sbjct: 199 PGDQLRAVNWVVSARRGRLHVTRRLTDRAADVVVLIDMYRQPAGPATEATERVVRGAAQV 258
Query: 254 LLDALENGTSFGLL-ISEAVPIWTKVDYGKRHFFKCID-VLSISRPDKNNMIAYQVEHMA 311
+ AL NG G++ + P W D G+R F++ +D VL +N
Sbjct: 259 VQTALRNGDRAGIVALGGNRPRWLGADIGQRQFYRVLDTVLGAGEGFENTTGTL----AP 314
Query: 312 RTKLPPRAQIIFISPLLTRESEEAIFTLYRLGYKIVTISPDPYSAREPRSREEELALRLL 371
R +P A +I S LL E A+ L + G+ +V + D + + + + L +R+
Sbjct: 315 RAAVPAGAVVIAFSTLLDTEFALALIDLRKRGHVVVAV--DVLDSCPLQDQLDPLVVRMW 372
Query: 372 GLKRKARIRKVSEWTI-VIDWNVKHPLKAAI 401
L+R A R ++ + V+ W H L+ ++
Sbjct: 373 ALQRSAMYRDMATIGVDVLSWPADHSLQQSM 403
>pir||A75012 conserved hypothetical protein PAB1277 - Pyrococcus abyssi (strain
Orsay) >gi|5459049|emb|CAB50535.1| (AJ248288) pepX
related from Caldicellulosiruptor saccharolyticus
[Pyrococcus abyssi]
Length = 394
Score = 87.8 bits (214), Expect = 2e-16
Identities = 68/276 (24%), Positives = 125/276 (44%), Gaps = 21/276 (7%)
Query: 5 GKAYALMTIIWIITILSYFLIRWEGVALTIPFLMVFLLSTIFFKSSVGVEVKREIERSRA 64
G ++ L +W + + F G P L++ + + F + G V+RE+ + R
Sbjct: 3 GVSFFLTLFLWFVLLSVIF--GTPGKLALFPLLIIIV--GMIFDTPGGFTVEREVTKRRV 58
Query: 65 IEGSIVEITLKIKPRANARAVLVQDLTPEGLEILGRNSWVLSLKEGE-EVKLKYK-VKVV 122
G V + L+++ V++++ P E+ G ++ G+ E +Y V
Sbjct: 59 FVGEEVRVKLRVRVSKGIGIVILKENLPRAFEVKGSATFHFFTYPGKREFSFEYSFVPRR 118
Query: 123 RGHHEFLGVRIS-------YRDPFGIFEEDRVVEIYDELIGIPRIEDVITPYSTKGTKIT 175
+G ++ + + +G++ + + +L R+ Y K+
Sbjct: 119 KGEYDIPKTEVFAYHFMRLHPMRWGLYGNGEKILVIPKLSATSRLL-----YKRMAHKLL 173
Query: 176 TGPLPSPRLGEGLEFHAVREYMPGDPMKIINWKATAKTGKIMVNEFESERKVDVVVVVD- 234
S + +F +REY PGDP K INWKATA++GK++VNEFE E K +++ +D
Sbjct: 174 PQLSLSKTGPQSTDFLEIREYRPGDPFKAINWKATARSGKLLVNEFEREGKDTIMIFLDS 233
Query: 235 --ATYKGVDVFDHLMRAAASLLLDALENGTSFGLLI 268
+ +G VF+ + A SL + L+ G + GL I
Sbjct: 234 RISVLEGEKVFEKAISLAYSLAMVHLKKGDNVGLYI 269
>pir||H71139 hypothetical protein PH0331 - Pyrococcus horikoshii
>gi|3256722|dbj|BAA29405.1| (AP000002) 406aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 406
Score = 85.4 bits (208), Expect = 1e-15
Identities = 96/408 (23%), Positives = 179/408 (43%), Gaps = 42/408 (10%)
Query: 5 GKAYALMTIIWIITILSYFLIRWEGVALTIPFLMVFLLSTIFFKSSVGVEVKREIERSRA 64
G ++ + +W I + F + G P L+ L+ + F + EV+REIE+++
Sbjct: 6 GASFFVTLFLWFIVMSLIFGV--PGKLAVFPLLL--LIMGLLFDAPGDFEVEREIEKAQT 61
Query: 65 IEGSIVEITLKIKPRANARAVLVQDLTPEG-LEILGRN-SWVLSLKEGEEVKLKYKV-KV 121
G+ +E+ ++++ V+V++ P+ + G N + + +L YK+ +
Sbjct: 62 FVGNEIEVLVRVRVGRGIGLVMVRENIPKAFMTSSGSNVGYFFTYPGRRSFQLSYKLLPL 121
Query: 122 VRGHHEFLGVRIS-------YRDPFGIFEEDRVVEIYDELIGIPRIEDVITPYSTKGTKI 174
RG +E I + +G++ +E++ +P+I S + +
Sbjct: 122 KRGVYEIPKTEIISLHFLRIHPMKWGLYGG------VNEIVVLPKIGITRWVRSWRALES 175
Query: 175 TTGPLPSPRLG-EGLEFHAVREYMPGDPMKIINWKATAKTGKIMVNEFESERKVDVVVVV 233
+ G LEF +REY PGDP K+INWKATA+TGK++VNE+E E + +++ +
Sbjct: 176 QRSQISKSLSGVTTLEFKEIREYKPGDPFKVINWKATARTGKLLVNEYEKEGQDTIILFL 235
Query: 234 DATYKGVDV-------FDHLMRAAASLLLDALENGTSFGL-LISEAVPIWTKVDYGKRHF 285
DA G +V ++ + A +L + L G++ GL +I + + R
Sbjct: 236 DAR-MGEEVGSIVENPLEYGIELAYALSIYLLGRGSNVGLYIIGQGKMVTPSSSLSHRDT 294
Query: 286 FKCIDVLSISRPDKNNMIAYQVEHMARTKLPPRAQIIFISPLLTRESEEAIFTLYRLGYK 345
+ S R ++ A++ + K P+ II T E + + ++G
Sbjct: 295 ILKALIASEYRKEETFEEAFKKSAILLRKFNPKVVII------TNVIPEVVEEIKKIGKN 348
Query: 346 IVTISPDPYSAREPRSREEELALRLLGLKRKARIRKVSEWTIVIDWNV 393
T+ D + E L+ LK+ A RK+ VI W+V
Sbjct: 349 RNTLIVDV----SVYCKLSEDICPLINLKKLALYRKLG--ARVIPWDV 390
>dbj|BAB04451.1| (AP001509) unknown conserved protein in others [Bacillus
halodurans]
Length = 457
Score = 78.0 bits (189), Expect = 2e-13
Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 7/152 (4%)
Query: 123 RGHHEFLGVRISYRDPFGIFEEDRVVEIYDELIGIPRIEDVITPYSTKGTK-ITTGPLPS 181
RG++ F +RI + PFG++ + V I E+ P + V ++ + + G +
Sbjct: 147 RGNYPFSYLRIRLKGPFGLWMKQTKVSIEQEMKIFPDLSGVRGILASMQNQFMLEGKKVN 206
Query: 182 PRLGEGLEFHAVREYMPGDPMKIINWKATAKTGKIMVNEFESERKVDVVVVVD-ATYKGV 240
+ G E HA+REY+P D ++INWKATA+TG +M +EF ER V++++D G+
Sbjct: 207 RKERTGSELHAIREYIPDDDPRLINWKATARTGTLMTSEFRPERGKVVMLMLDCGRMMGI 266
Query: 241 DV-----FDHLMRAAASLLLDALENGTSFGLL 267
++ D + AA SL AL+ G G++
Sbjct: 267 ELNNRTKLDATIEAALSLAAVALKQGDKVGVI 298
>pir||A71147 hypothetical protein PH0387 - Pyrococcus horikoshii
>gi|3256779|dbj|BAA29462.1| (AP000002) 422aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 422
Score = 77.3 bits (187), Expect = 3e-13
Identities = 61/229 (26%), Positives = 108/229 (46%), Gaps = 10/229 (4%)
Query: 9 ALMTIIWIITILSYFLIRWEGVALTIPFLMVFLLSTIFFKSSVGVEVKREIERSRAIEGS 68
AL+T+I + + Y + L I F V VEVK R EG
Sbjct: 6 ALLTLIGVDLLYGYLSNNLASSLFAFLLFLYILHERINFNPKVDVEVKLP---ERLEEGK 62
Query: 69 IVEITLKIKPRANARAVLVQDLTPEGLEILGRNSWVLSLKEGEEVKLKYKVKVVRGHHEF 128
I E+ + ++ R + + ++ EG +++G V L GE++ +K VK + +
Sbjct: 63 ITEVNVVVRNRGSKG---ILEVKIEGEDLIGEAKRV-KLDSGEKL-VKLSVKPLNKGDKV 117
Query: 129 LGVRISYRDPFGIFEEDRVVEIYDELIGIPRIEDVITPYSTKGTKITTGPLPSPRLG-EG 187
L V+ + D ++ + V E + +P ++ + + + L ++G E
Sbjct: 118 LKVKALFEDELNLYYSE-VYEAEFSIQVLPSVDSIREAAREEVSIRMREALKKGKIGVES 176
Query: 188 LEFHAVREYMPGDPMKIINWKATAKTGKIMVNEFESERKVDVVVVVDAT 236
E + +REY+PGD ++ I+WKAT + K++V EF E + DV +V+DAT
Sbjct: 177 TELYGLREYLPGDDVRRIDWKATTRLRKLIVKEFMRESEGDVYIVLDAT 225
>dbj|BAB04324.1| (AP001509) unknown conserved protein [Bacillus halodurans]
Length = 385
Score = 76.5 bits (185), Expect = 5e-13
Identities = 63/254 (24%), Positives = 115/254 (44%), Gaps = 12/254 (4%)
Query: 20 LSYFLIRWEGVALTIPFLMVFLLSTIFFKSSVGVEVKREIERSRAIEGSIVEITLKIKPR 79
+S+FL + V +T+ L+VFL S G +V+R + + A G + +T+ ++ R
Sbjct: 37 VSWFLF-YSVVTVTVLTLIVFLFSF------QGFDVERSLSQKTAQAGGELTVTIYLRRR 89
Query: 80 ANARA--VLVQDLTPEGLEILGRNSWVLSLKEGEEVKLKYKVKVVR-GHHEFLGVRISYR 136
+ + V+DL P + + E +Y + +R G H F V + +
Sbjct: 90 SWRPFFYIRVKDLVPLSIGRTEGAGALFFFGLQREWSYQYVISNIRRGEHRFENVHLVFG 149
Query: 137 DPFGIFEEDRVVEIYDELIGIPRIEDVITPYSTKGTKITTGPLPSPRLGEGLEFHAVREY 196
D FG+ E++ V + ++ P + V + + G + + E VR+Y
Sbjct: 150 DLFGLIEKETTVPVESSVLIYPNVHHVKELPPIQNRTFSQGKRANRQQEEERSLAGVRDY 209
Query: 197 MPGDPMKIINWKATAKTGKIMVNEFESERKVDVVVVVDATYKGVD--VFDHLMRAAASLL 254
+PGD + I+WK +A+ K + EFES +VV DA + + F+ + AASL+
Sbjct: 210 VPGDRLSTIDWKQSARALKFVTKEFESYDGEGIVVAFDAYLETLSPTSFETAVELAASLM 269
Query: 255 LDALENGTSFGLLI 268
L+ S + +
Sbjct: 270 YKVLQQRPSLEVAV 283
>pir||H72606 hypothetical protein APE1319 - Aeropyrum pernix (strain K1)
>gi|5104996|dbj|BAA80310.1| (AP000061) 413aa long
hypothetical protein [Aeropyrum pernix]
Length = 413
Score = 75.3 bits (182), Expect = 1e-12
Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 19/220 (8%)
Query: 55 VKREIERSRAIEGSIVEITLKIK-PRANARAVLVQDLTPEGLEILGRNSWVLSLKEGEEV 113
V R +A+EGS V I +++ PR R +V+D P L ++G + G V
Sbjct: 59 VSRAAGHIKAVEGSRVRIAFRLEAPRGLPRGTVVRDSPPRRLAVIGEPEAPVEGGPGGVV 118
Query: 114 KLKYKVKVVRGHHEFLGVRISYRDPFGIFEEDRVVEIYDELIGIPRIEDVITPYSTKGTK 173
+ Y+ K G H + V + P G+ V + + L + +E +P + + +
Sbjct: 119 EAWYEAKPSVGSHRWSEVEVYAESPGGL----AVASVRNSLPIL--LEAAPSPRALEEVR 172
Query: 174 ITTGPLP------SPRLGEGLEFHAVREYMPGDPMKIINWKATAKTGKIMVNEFESERKV 227
+ + + R G EF +REY PGD ++I+W +TA+ G ++V E E ++
Sbjct: 173 LRLAAMTGYSKPVNRRWPLGYEFLELREYQPGDDPRMIHWPSTARAGTLVVRETAMETRL 232
Query: 228 DVVVVVDATYK------GVDVFDHLMRAAASLLLDALENG 261
++ +V+DA+ + G DH R +L A E+G
Sbjct: 233 NLTIVLDASGEMWIGGPGASPIDHAARLTLALAALAWESG 272
>pir||S75346 hypothetical protein slr2013 - Synechocystis sp. (strain PCC 6803)
>gi|1652337|dbj|BAA17260.1| (D90904) hypothetical
protein [Synechocystis sp.]
Length = 435
Score = 72.2 bits (174), Expect = 1e-11
Identities = 66/275 (24%), Positives = 128/275 (46%), Gaps = 43/275 (15%)
Query: 144 EDRVVEIYDELIGIPRIEDVITPYSTKGTKITTGPLPSPR-LGEGLEFHAVREYMPGDPM 202
E V ++ +LIG+ + + + + TTG L R LG G EF +R+Y GD +
Sbjct: 153 EGETVTVHPDLIGLKSL-------TIRLAQATTGNLRQMRKLGLGTEFRELRDYQAGDDL 205
Query: 203 KIINWKATAKTGKIMVNEFESERKVDVVVVVD------ATYKGVDVFDHLMRAAASLLLD 256
+ ++WKA+A+ G ++ E ER+ V++++D A +G+ FD + + +L +
Sbjct: 206 RYLDWKASARRGIPLMRVLEPEREQTVIILLDRGRLMTAWVQGLQRFDWGLNTSLALAVA 265
Query: 257 ALENGTSFGL-LISEAVPIWTKVDYGKRHFFKCIDVLS-----ISRPDKNNMIAYQVEHM 310
AL G G+ + V W + G ++ K + LS + PD + I V+
Sbjct: 266 ALHRGDRLGIGVFDREVVSWLPPERGLQYLPKLLKTLSPLQPVLREPDYSAAIGKLVQQQ 325
Query: 311 ARTKLPPRAQIIFISPLL-TRESEEAIFTLYRLGYKIVTISPDPYSAREPR--------- 360
R RA ++ I+ L+ S+E + L +L + + P + R+P+
Sbjct: 326 TR-----RALVVCITDLIDPTASQELLTALTQLAPRYL---PFCVTLRDPQVDQLAHAPA 377
Query: 361 -----SREEELALRLLGLKRKARIRKVSEWTIVID 390
+ ++ +A+ LL ++ A ++ + +V+D
Sbjct: 378 TTVSGAYQQAVAINLLQQRQLALVKLKQKGVLVLD 412
>sp|P94475|YEAD_BACSU HYPOTHETICAL 30.5 KD PROTEIN IN GABP-GUAA INTERGENIC REGION
>gi|7474549|pir||D69791 conserved hypothetical protein
yeaD - Bacillus subtilis >gi|1708642|gb|AAB62309.1|
(U51115) yeaD [Bacillus subtilis]
>gi|2632947|emb|CAB12453.1| (Z99107) similar to
hypothetical proteins from B. subtilis [Bacillus
subtilis]
Length = 270
Score = 72.2 bits (174), Expect = 1e-11
Identities = 62/262 (23%), Positives = 110/262 (41%), Gaps = 10/262 (3%)
Query: 120 KVVRGHHEFLGVRISYRDPFGIFEEDRVVEIYDELIGIPRIEDVITPYSTKGTKITTGPL 179
+V RG H F VR+ D G+ E+ E+ D L P + + + +
Sbjct: 7 RVPRGEHHFHSVRVRTGDVLGLIEKTAFFELDDTLFVYPFYQRFSYQVNERHQEDGVSGS 66
Query: 180 PSPRLGEGLEFHAVREYMPGDPMKIINWKATAKTGKIMVNEFESERKVDVVVVVDATYKG 239
+VR Y PGD ++WK +A+ ++M EFE R ++ +++D
Sbjct: 67 SPIHQHHSSVAASVRNYQPGDRFAALDWKTSARRSQLMTKEFEPSRSKNLFLLMDRF--S 124
Query: 240 VDVFDHLMRAAASLLLDALENGTSFGLLISEAVPIWTKVDYGKRHFFKCIDVLSISRPDK 299
D F+ ++ AS+L L+NG GL + G +HF + L+I+ D
Sbjct: 125 SDAFEEVVSVTASILHSVLKNGAGAGLASIGKEKNIFPIQEGDQHFKHMLRHLAIAHCDA 184
Query: 300 NNMIA-YQVEHMARTKLPPRAQIIFISPLLTRESEEAIFTLYRLGYKIVTISPDPYSARE 358
+ I+ Y E + + + Q++ +T + E + L +G VT+ E
Sbjct: 185 ADPISRYAREELGKPSVRQADQVV-----VTGQLTEDMLHLAEIGGGRVTVILAKEKDAE 239
Query: 359 PRSREEELALRLLGLKRKARIR 380
E + R+ +KR+ R+R
Sbjct: 240 LSQAENVMIERM--MKRQIRVR 259
>pir||T35916 conserved hypothetical protein SC9B2.20c - Streptomyces coelicolor
>gi|4160329|emb|CAA22800.1| (AL035212) conserved
hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 460
Score = 69.9 bits (168), Expect = 5e-11
Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Query: 177 GPLPSPRLGEGLEFHAVREYMPGDPMKIINWKATAKTGKIMVNEFESERKVDVVVVVDA- 235
G SP+ GEG+E V ++PG+ + I+W +T + G + ++ F +ER D V++VDA
Sbjct: 214 GEHASPQSGEGVEVIGVGPWVPGERQRRIHWPSTTRRGAVQLHRFAAERAADTVMLVDAF 273
Query: 236 -----TYKGVDVFDHLMRAAASLLLDALENGTSFGLLISEAVPIWTKVDYGKRHFFKCID 290
G+ D +RAAA L L G++ + W G F++ ++
Sbjct: 274 GDVVDPVTGLSSLDETVRAAAGLARAYLRTHDRVGVVSTGGTTRWLAPGTGDAAFYRIVE 333
Query: 291 VLSISRPDKNNMIAYQVEHMARTKLPPRAQIIFISPLLTRESEEAIFTLYRLGYKIVTIS 350
+ R D+ +E + LP A + +PL + + L G + V +
Sbjct: 334 SVLDVRKDR-GFGGDGLERVPSPALPEGALVYVFTPLSDARILQVLRDLQARGRRPVVVE 392
Query: 351 -PDPYSAREPRSREEELALRLLGLKRKA-RIRKVSEWTIVIDWNVKHPLKAAILSTFRGN 408
P EP L LRL +R A R V+ PL A+ G
Sbjct: 393 IPSGDPVVEPGDEAGGLGLRLWRAERDAMRFALRDSGVPVLRHTEGEPLDLALAPLLAGR 452
Query: 409 V 409
V
Sbjct: 453 V 453
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.407
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151245606
Number of Sequences: 2977
Number of extensions: 6298637
Number of successful extensions: 14191
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 14177
Number of HSP's gapped (non-prelim): 14
length of query: 410
length of database: 189,106,746
effective HSP length: 55
effective length of query: 355
effective length of database: 156,189,961
effective search space: 55447436155
effective search space used: 55447436155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)